RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13131
         (148 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 81  NDKLAHWQYFVAGSFSGITTAAITAPGERIKCLLQIQ----SNETAKVYSGPVDVVRKLV 136
           +  L+  + F+AG  +   +    AP ER+K LLQ+Q         K Y G +D V ++ 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 137 RQHGV 141
           ++ G 
Sbjct: 61  KEQGF 65



 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 30  STFDCFTKIVRNESAVGLYKGMGAPITGVAPIFALSFLGY 69
            T DC+ KI ++E     +KG  + +       A   + Y
Sbjct: 251 GTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLY 289


>d1pgl22 b.121.4.2 (2:183-370) Comovirus coat proteins (VP37 and
           VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
          Length = 188

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 10/61 (16%)

Query: 68  GYGAGKKVLTNENNDKLAHWQYFVAG----------SFSGITTAAITAPGERIKCLLQIQ 117
           G GA   +L N  N  L+ W+YFV             +   T +   A G      +  +
Sbjct: 38  GAGAKSAILMNMPNAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFE 97

Query: 118 S 118
           +
Sbjct: 98  A 98


>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and
           VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
          Length = 187

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 68  GYGAGKKVLTNENNDKLAHWQYFVAG----------SFSGITTAAITAPGERIKCLLQIQ 117
           G GA +  L N  N  ++ W+YF              +   T   + A G         +
Sbjct: 38  GAGATQAFLANMPNSWISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFGFYE 97

Query: 118 S 118
           S
Sbjct: 98  S 98


>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
           5661]}
          Length = 236

 Score = 24.7 bits (53), Expect = 5.8
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 42  ESAVGLYKGMGAPITGVAPIFALSFLGYGAGKKVLTNENNDKLAHWQYFVAGSFSGITTA 101
            S + L +   A +  +  I ++ FL      + + +  N +    ++    S   +T  
Sbjct: 155 LSGLQLVEASDAVVVEMVSILSIPFLK---AAEKIHSTANSRYKDIKFISLLSDDALTEE 211

Query: 102 AITAPGERI 110
                    
Sbjct: 212 NCGDSKNYT 220


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 24.6 bits (53), Expect = 6.2
 Identities = 2/18 (11%), Positives = 4/18 (22%)

Query: 25  YNIFWSTFDCFTKIVRNE 42
               + T   +   V   
Sbjct: 342 VQAQFGTLQEYFDAVHQA 359


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 23.9 bits (51), Expect = 9.9
 Identities = 4/19 (21%), Positives = 8/19 (42%)

Query: 24  EYNIFWSTFDCFTKIVRNE 42
             N+ +ST  C+   +   
Sbjct: 294 RVNVLYSTPACYLWELNKA 312


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,984
Number of extensions: 22100
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)