BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13135
(996 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 338 bits (866), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 19/376 (5%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+W+Q R G +F P+++DP LCTH+IYAF + +H+L+ E ++ +F L
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGL 62
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ NP +K LLAIGGW FG+ F ++ FV +I FLR++ F+GLD+DWE
Sbjct: 63 KKM---NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWE 119
Query: 499 YPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP A D+ + L+++L AF+ EA+TSG+ RLLL+AAVPA + AGY+V +I
Sbjct: 120 YPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
++ LDF+N+M YDFHG WE+ GHNSPL + + L V+ + ++W+++G P KL
Sbjct: 180 AQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMPTYGRSFTL + +GAPA+G G PG +T E G ++YYEVC + +
Sbjct: 240 ILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI--- 296
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVF 734
+Q+VP+ ++D+QWVGFDD S K K+ +LK+ G GG M+W++D+DD + F
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG---------F 347
Query: 735 RMNQFVYESIEFLREH 750
NQ Y I+ LR+
Sbjct: 348 SCNQGRYPLIQTLRQE 363
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLA 781
F ++ FV +I FLR++ F+GLD+DWEYP A D+ + L+++L A
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANA 144
Query: 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHN 841
F+ EA+TSG+ RLLL+AAVPA + AGY+V +I++ LDF+N+M YDFHG WE+ GHN
Sbjct: 145 FQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHN 204
Query: 842 SPL 844
SPL
Sbjct: 205 SPL 207
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 158 YERIEQLKKANPKLKTLLAIG 178
Y+ LKK NPKLKTLLAIG
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIG 76
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 276 EMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPL 335
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C +YPL
Sbjct: 298 DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPL 356
Query: 336 IGAMREELN 344
I +R+EL+
Sbjct: 357 IQTLRQELS 365
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 828 YDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVD----LLLTAAVPAS 880
Y F G WE SP E TTL A ++Q++ LLL+AAVPA
Sbjct: 109 YSFDGLDLDWEYPGSQGSPAVDKERF--TTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 881 FEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ AGY+V +I++ LDF+N+M YDFHG WE+ GHNSPL
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY T+W+Q R G +F P+++DP LCTH+IYA +
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFA 38
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 338 bits (866), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 19/376 (5%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+W+Q R G +F P+++DP LCTH+IYAF + +H+L+ E ++ +F L
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGL 62
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ NP +K LLAIGGW FG+ F ++ FV +I FLR++ F+GLD+DWE
Sbjct: 63 KKM---NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWE 119
Query: 499 YPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP A D+ + L+++L AF+ EA+TSG+ RLLL+AAVPA + AGY+V +I
Sbjct: 120 YPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
++ LDF+N+M YDFHG WE+ GHNSPL + + L V+ + ++W+++G P KL
Sbjct: 180 AQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMPTYGRSFTL + +GAPA+G G PG +T E G ++YYEVC + +
Sbjct: 240 ILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI--- 296
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVF 734
+Q+VP+ ++D+QWVGFDD S K K+ +LK+ G GG M+W++D+DD + F
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG---------F 347
Query: 735 RMNQFVYESIEFLREH 750
NQ Y I+ LR+
Sbjct: 348 SCNQGRYPLIQTLRQE 363
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLA 781
F ++ FV +I FLR++ F+GLD+DWEYP A D+ + L+++L A
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANA 144
Query: 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHN 841
F+ EA+TSG+ RLLL+AAVPA + AGY+V +I++ LDF+N+M YDFHG WE+ GHN
Sbjct: 145 FQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHN 204
Query: 842 SPL 844
SPL
Sbjct: 205 SPL 207
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 158 YERIEQLKKANPKLKTLLAIG 178
Y+ LKK NPKLKTLLAIG
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIG 76
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 276 EMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPL 335
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C +YPL
Sbjct: 298 DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPL 356
Query: 336 IGAMREEL 343
I +R+EL
Sbjct: 357 IQTLRQEL 364
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 828 YDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVD----LLLTAAVPAS 880
Y F G WE SP E TTL A ++Q++ LLL+AAVPA
Sbjct: 109 YSFDGLDLDWEYPGSQGSPAVDKERF--TTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 881 FEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ AGY+V +I++ LDF+N+M YDFHG WE+ GHNSPL
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY T+W+Q R G +F P+++DP LCTH+IYA +
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFA 38
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 19/376 (5%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+W+Q R G +F P+++DP LCTH+IYAF + +H+L+ E ++ +F L
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGL 62
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ NP +K LLAIGGW FG+ F ++ FV +I FLR++ F+GLD+DWE
Sbjct: 63 KKM---NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWE 119
Query: 499 YPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP A D+ + L+++L AF+ EA+TSG+ RLLL+AAVPA + AGY+V +I
Sbjct: 120 YPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
++ LDF+N+M YDFHG WE+ GHNSPL + + L V+ + ++W+++G P KL
Sbjct: 180 AQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMPTYGRSFTL + +GAPA+G G PG +T E G ++YYEVC + +
Sbjct: 240 ILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI--- 296
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVF 734
+Q+VP+ ++D+QWVGFDD S K K+ +LK+ G GG M+W++D+DD + F
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG---------F 347
Query: 735 RMNQFVYESIEFLREH 750
NQ Y I+ LR+
Sbjct: 348 SCNQGRYPLIQTLRQE 363
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLA 781
F ++ FV +I FLR++ F+GLD+DWEYP A D+ + L+++L A
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANA 144
Query: 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHN 841
F+ EA+TSG+ RLLL+AAVPA + AGY+V +I++ LDF+N+M YDFHG WE+ GHN
Sbjct: 145 FQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHN 204
Query: 842 SPL 844
SPL
Sbjct: 205 SPL 207
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 158 YERIEQLKKANPKLKTLLAIG 178
Y+ LKK NPKLKTLLAIG
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIG 76
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 276 EMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPL 335
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C +YPL
Sbjct: 298 DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPL 356
Query: 336 IGAMREELN 344
I +R+EL+
Sbjct: 357 IQTLRQELS 365
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 828 YDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVD----LLLTAAVPAS 880
Y F G WE SP E TTL A ++Q++ LLL+AAVPA
Sbjct: 109 YSFDGLDLDWEYPGSQGSPAVDKERF--TTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 881 FEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ AGY+V +I++ LDF+N+M YDFHG WE+ GHNSPL
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY T+W+Q R G +F P+++DP LCTH+IYA +
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFA 38
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 19/376 (5%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+W+Q R G +F P+++DP LCTH+IYAF + +H+L+ E ++ +F L
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGL 62
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ NP +K LLAIGGW FG+ F ++ FV +I FLR++ F+GLD+DWE
Sbjct: 63 KKM---NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWE 119
Query: 499 YPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP A D+ + L+++L AF+ EA+TSG+ RLLL+AAVPA + AGY+V +I
Sbjct: 120 YPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
++ LDF+N+M YDFHG WE+ GHNSPL + + L V+ + ++W+++G P KL
Sbjct: 180 AQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMPTYGRSFTL + +GAPA+G G PG +T E G ++YYEVC + +
Sbjct: 240 ILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI--- 296
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVF 734
+Q+VP+ ++D+QWVGFDD S K K+ +LK+ G GG M+W++D+DD + F
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG---------F 347
Query: 735 RMNQFVYESIEFLREH 750
NQ Y I+ LR+
Sbjct: 348 SCNQGRYPLIQTLRQE 363
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLA 781
F ++ FV +I FLR++ F+GLD+DWEYP A D+ + L+++L A
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANA 144
Query: 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHN 841
F+ EA+TSG+ RLLL+AAVPA + AGY+V +I++ LDF+N+M YDFHG WE+ GHN
Sbjct: 145 FQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHN 204
Query: 842 SPL 844
SPL
Sbjct: 205 SPL 207
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 158 YERIEQLKKANPKLKTLLAIG 178
Y+ LKK NPKLKTLLAIG
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIG 76
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 276 EMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPL 335
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C +YPL
Sbjct: 298 DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPL 356
Query: 336 IGAMREELN 344
I +R+EL+
Sbjct: 357 IQTLRQELS 365
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 828 YDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVD----LLLTAAVPAS 880
Y F G WE SP E TTL A ++Q++ LLL+AAVPA
Sbjct: 109 YSFDGLDLDWEYPGSQGSPAVDKERF--TTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 881 FEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ AGY+V +I++ LDF+N+M YDFHG WE+ GHNSPL
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY T+W+Q R G +F P+++DP LCTH+IYA +
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFA 38
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 227/350 (64%), Gaps = 8/350 (2%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQ 440
CY T+W+Q RPG G+F P++I+P LCTH+IYAF ++++++T E ++ ++A
Sbjct: 5 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEIT---TIEWNDVTLYQAFNG 61
Query: 441 LREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP 500
L+ KN +K LLAIGGW FG+ PF + F+ I+FLR+++F+GLD DWEYP
Sbjct: 62 LKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 121
Query: 501 --RGA--DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISK 556
RG+ D+ + L++E+R AFE EAK +PRL++TAAV A I +GY++P++S+
Sbjct: 122 GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQ 181
Query: 557 YLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMI 616
YLD+I+VMTYD HG WE G NSPL T L V+Y W GAP EKL++
Sbjct: 182 YLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIV 241
Query: 617 GMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNE 676
G PTYG +F L +P+ IGAP SG G G Y E+G +YYE+C FL K+ T WD
Sbjct: 242 GFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFL-KNGATQGWDAP 300
Query: 677 QQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
Q+VP+AY+ + WVG+D+ +S +K WLK + +GG M+W++D+DD + F
Sbjct: 301 QEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTF 350
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 84/126 (66%), Gaps = 4/126 (3%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGA--DDRASYVNLLKEL 778
+ PF + F+ I+FLR+++F+GLD DWEYP RG+ D+ + L++E+
Sbjct: 82 TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEM 141
Query: 779 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQV 838
R AFE EAK +PRL++TAAV A I +GY++P++S+YLD+I+VMTYD HG WE
Sbjct: 142 REAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYT 201
Query: 839 GHNSPL 844
G NSPL
Sbjct: 202 GENSPL 207
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 260 RVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 319
+C L+NGA WD +VPY G+ WVG+D+ KS K WLK N +GGAMVW +D+
Sbjct: 284 EICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDL 343
Query: 320 DDFTGTVCGGDVKYPLIGAMREEL 343
DDFTGT C K+PLI +++ L
Sbjct: 344 DDFTGTFC-NQGKFPLISTLKKAL 366
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y++ CY+TNW+QYR +G+F P+DI P LCTH+I+AF ++ ++++ E ND T
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWNDVT------ 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ LK N +LKTLLAIG
Sbjct: 55 LYQAFNGLKNKNSQLKTLLAIG 76
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
L++TAAV A I +GY++P++S+YLD+I+VMTYD HG WE G NSPL
Sbjct: 157 LMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 207
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 223 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
CY T+W+Q RPG G+F P++I+P LCTH+IYA +
Sbjct: 5 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFA 38
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 337 bits (863), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 227/350 (64%), Gaps = 8/350 (2%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQ 440
CY T+W+Q RPG G+F P++I+P LCTH+IYAF ++++++T E ++ ++A
Sbjct: 9 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEIT---TIEWNDVTLYQAFNG 65
Query: 441 LREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP 500
L+ KN +K LLAIGGW FG+ PF + F+ I+FLR+++F+GLD DWEYP
Sbjct: 66 LKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 125
Query: 501 --RGA--DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISK 556
RG+ D+ + L++E+R AFE EAK +PRL++TAAV A I +GY++P++S+
Sbjct: 126 GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQ 185
Query: 557 YLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMI 616
YLD+I+VMTYD HG WE G NSPL T L V+Y W GAP EKL++
Sbjct: 186 YLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIV 245
Query: 617 GMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNE 676
G PTYG +F L +P+ IGAP SG G G Y E+G +YYE+C FL K+ T WD
Sbjct: 246 GFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFL-KNGATQGWDAP 304
Query: 677 QQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
Q+VP+AY+ + WVG+D+ +S +K WLK + +GG M+W++D+DD + F
Sbjct: 305 QEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTF 354
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 84/126 (66%), Gaps = 4/126 (3%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGA--DDRASYVNLLKEL 778
+ PF + F+ I+FLR+++F+GLD DWEYP RG+ D+ + L++E+
Sbjct: 86 TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEM 145
Query: 779 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQV 838
R AFE EAK +PRL++TAAV A I +GY++P++S+YLD+I+VMTYD HG WE
Sbjct: 146 REAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYT 205
Query: 839 GHNSPL 844
G NSPL
Sbjct: 206 GENSPL 211
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 260 RVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 319
+C L+NGA WD +VPY G+ WVG+D+ KS K WLK N +GGAMVW +D+
Sbjct: 288 EICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDL 347
Query: 320 DDFTGTVCGGDVKYPLIGAMREEL 343
DDFTGT C K+PLI +++ L
Sbjct: 348 DDFTGTFC-NQGKFPLISTLKKAL 370
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y++ CY+TNW+QYR +G+F P+DI P LCTH+I+AF ++ ++++ E ND V
Sbjct: 5 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWND------VT 58
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ LK N +LKTLLAIG
Sbjct: 59 LYQAFNGLKNKNSQLKTLLAIG 80
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
L++TAAV A I +GY++P++S+YLD+I+VMTYD HG WE G NSPL
Sbjct: 161 LMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 211
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 223 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
CY T+W+Q RPG G+F P++I+P LCTH+IYA +
Sbjct: 9 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFA 42
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 336 bits (862), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 19/376 (5%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+W+Q R G +F P+++DP LCTH+IYAF + +H+L+ E ++ +F L
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFNGL 62
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ NP +K LLAIGGW FG+ F ++ FV +I FLR++ F+GLD+DWE
Sbjct: 63 KKM---NPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWE 119
Query: 499 YPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP A D+ + L+++L AF+ EA+TSG+ RLLL+AAVPA + AGY+V +I
Sbjct: 120 YPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
++ LDF+N+M YDFHG WE+ GHNSPL + + L V+ + ++W+++G P KL
Sbjct: 180 AQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMPTYGRSFTL + +GAPA+G G PG +T E G ++YYEVC + +
Sbjct: 240 ILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI--- 296
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVF 734
+Q+VP+ ++D+QWVGFDD S K K+ +LK+ G GG M+W++D+DD + F
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAG---------F 347
Query: 735 RMNQFVYESIEFLREH 750
NQ Y I+ LR+
Sbjct: 348 SCNQGRYPLIQTLRQE 363
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLA 781
F ++ FV +I FLR++ F+GLD+DWEYP A D+ + L+++L A
Sbjct: 85 FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANA 144
Query: 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHN 841
F+ EA+TSG+ RLLL+AAVPA + AGY+V +I++ LDF+N+M YDFHG WE+ GHN
Sbjct: 145 FQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHN 204
Query: 842 SPL 844
SPL
Sbjct: 205 SPL 207
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 6/81 (7%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 158 YERIEQLKKANPKLKTLLAIG 178
Y+ LKK NPKLKTLLAIG
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIG 76
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 276 EMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPL 335
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C +YPL
Sbjct: 298 DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQGRYPL 356
Query: 336 IGAMREELN 344
I +R+EL+
Sbjct: 357 IQTLRQELS 365
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 828 YDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVD----LLLTAAVPAS 880
Y F G WE SP E TTL A ++Q++ LLL+AAVPA
Sbjct: 109 YSFDGLDLDWEYPGSQGSPAVDKERF--TTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 881 FEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ AGY+V +I++ LDF+N+M YDFHG WE+ GHNSPL
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY T+W+Q R G +F P+++DP LCTH+IYA +
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFA 38
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 941 HPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDW 978
+P+ + + +Y C R CP+ LVF+ C W
Sbjct: 407 YPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 218/352 (61%), Gaps = 8/352 (2%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSW++ RP G F P NIDP LCTH+IYAF ++++++T +++ + +EAL
Sbjct: 3 LMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRD---YEAL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L++KN ++K LLAIGGW FG PF + F+ I FLR++ F+GL++DW+
Sbjct: 60 NGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQ 119
Query: 499 YP--RGA--DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
YP RG+ D+ + L+KE+R AFE E+ PRLLLT+ + I +GY +PE+
Sbjct: 120 YPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPEL 179
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
S+ LD+I VMTYD H + G NSPL L V+ W GA EKL
Sbjct: 180 SQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKL 239
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++G P YG +F L DP+K IGAP G PGKYT E+G ++YYEVC FL + T VWD
Sbjct: 240 IVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL-NEGATEVWD 298
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
Q+VP+AY+ ++WVG+D+ RS K+K WLK++ GG ++W +DMDD S F
Sbjct: 299 APQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSF 350
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 725 PFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGA--DDRASYVNLLKELRL 780
PF + F+ I FLR++ F+GL++DW+YP RG+ D+ + L+KE+R
Sbjct: 84 PFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRK 143
Query: 781 AFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGH 840
AFE E+ PRLLLT+ + I +GY +PE+S+ LD+I VMTYD H + G
Sbjct: 144 AFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGE 203
Query: 841 NSPL--KPLEVLLITTLSIPGATSYQK 865
NSPL P ++ L++ SY K
Sbjct: 204 NSPLYKSPYDIGKSADLNVDSIISYWK 230
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
VC L GA VWD +VPY G++WVG+D+ +S + K WLKDN GGA+VW +DMD
Sbjct: 285 VCTFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMD 344
Query: 321 DFTGTVCGGDVKYPLIGAMREELN 344
DF+G+ C +PL ++ +LN
Sbjct: 345 DFSGSFC-HQRHFPLTSTLKGDLN 367
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+W++ R G F+P +I+P LCTH+I+AF ++ ++ ++ + +D
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEI-TYTHEQDLRD---- 55
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
YE + LK N +LKTLLAIG
Sbjct: 56 -YEALNGLKDKNTELKTLLAIG 76
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSW++ RP G F P NIDP LCTH+IYA +
Sbjct: 3 LMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFA 38
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL--KPLEANV 928
LLLT+ + I +GY +PE+S+ LD+I VMTYD H + G NSPL P +
Sbjct: 157 LLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGK 216
Query: 929 VSCEEEDGHISYHPDKA 945
+ D ISY D
Sbjct: 217 SADLNVDSIISYWKDHG 233
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 303 bits (775), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 223/350 (63%), Gaps = 15/350 (4%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY T+WSQ R GKF PENIDP LC+H+IY+F +++++K+ + K+K E ++ +
Sbjct: 4 LVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVII---KDKSEVMLYQTI 60
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ KNP +KILL+IGG+ FGS F + + +F+ I FLR H F+GLDV W
Sbjct: 61 NSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWI 120
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP ++ + L+ EL AF+ + S + RLLLTA V A + I Y V +++K L
Sbjct: 121 YPDQKEN-THFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDL 179
Query: 559 DFINVMTYDFHGQWERQV--GHNSPLKPL---EGATSYQKKLTVEYSAKEWVKQGAPKEK 613
DFIN++++DFHG WE+ + GHNSPL G +SY VEY+ W+ +G P EK
Sbjct: 180 DFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSY---YNVEYAVGYWIHKGMPSEK 236
Query: 614 LMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVW 673
+++G+PTYG SFTL + +GAPASG G G T +GF++YYE+C FLK T +
Sbjct: 237 VVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEICQFLKGAKITRLQ 295
Query: 674 DNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
D QQVP+A K +QWVG+DD +S++ K+ +LK GG MIWS+DMDD +
Sbjct: 296 D--QQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFT 343
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 644 EPGKYTAEA--GFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVGFDDERSLKMKM 701
EPGK+T E F+ + + F +N ++ ++ +V + SLK K
Sbjct: 17 EPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEVML---------YQTINSLKTKN 67
Query: 702 DWLK-EDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 760
LK GG + S F + + +F+ I FLR H F+GLDV W
Sbjct: 68 PKLKILLSIGGYLFGS-------KGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWI 120
Query: 761 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 820
YP ++ + L+ EL AF+ + S + RLLLTA V A + I Y V +++K L
Sbjct: 121 YPDQKEN-THFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDL 179
Query: 821 DFINVMTYDFHGQWERQV--GHNSPL 844
DFIN++++DFHG WE+ + GHNSPL
Sbjct: 180 DFINLLSFDFHGSWEKPLITGHNSPL 205
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L+ GA + +VPY V G+QWVG+DD KS+ K+ +LK+ GGAM+W++DMD
Sbjct: 282 ICQFLK-GAKITRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMD 340
Query: 321 DFTGTVCGGDVKYPLIGAMREELNGI 346
DFTG C YPL+ A++ L +
Sbjct: 341 DFTGKSCNQG-PYPLVQAVKRSLGSL 365
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKD-GKV 155
Y++VCY+TNWSQ R + GKF PE+I+P LC+H+I++F ++ K+ KD +V
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVI-------IKDKSEV 54
Query: 156 GLYERIEQLKKANPKLKTLLAIG 178
LY+ I LK NPKLK LL+IG
Sbjct: 55 MLYQTINSLKTKNPKLKILLSIG 77
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 860 ATSYQKKLTVD----LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQV 915
A ++QK T LLLTA V A + I Y V +++K LDFIN++++DFHG WE+ +
Sbjct: 138 AEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPL 197
Query: 916 --GHNSPL 921
GHNSPL
Sbjct: 198 ITGHNSPL 205
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALST 257
+ CY T+WSQ R GKF PENIDP LC+H+IY+ ++
Sbjct: 4 LVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFAS 40
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 217/349 (62%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP +K LL++GGW FG F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G RLLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL G + + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPL--FRGNSDASSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRSFTL +K D+GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTALVKEMKAEFARE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G RLLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NPKLKTLL++G
Sbjct: 55 LYDTLNTLKNRNPKLKTLLSVG 76
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 293 bits (750), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 221/349 (63%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP++K LL++GGW FG F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G +LLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL + E A+S + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGQEDASS--RFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+G+SFTL +K D+GAP SG G PG++T E G ++YYE+CDFL+ T D Q
Sbjct: 236 IPTFGKSFTLAS-SKTDVGAPVSGPGIPGQFTKEKGILAYYEICDFLQGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTTLVKEMKAEFIRE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G +LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L+ + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLQGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NP LKTLL++G
Sbjct: 55 LYDTLNTLKNRNPNLKTLLSVG 76
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 293 bits (750), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 219/349 (62%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP++K LL++GGW FGS F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G +LLL+AAVPA AI GYD+ +IS++L
Sbjct: 120 YP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W VGH+SPL G + + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGGWRGTVGHHSPL--FRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRS+TL +K D+GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGTLAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 782
S F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F
Sbjct: 82 SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GWRDKRHLTTLVKEMKAEF 140
Query: 783 EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNS 842
EA+ +G +LLL+AAVPA AI GYD+ +IS++LDFI+++TYDFHG W VGH+S
Sbjct: 141 VREAQ-AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHS 199
Query: 843 PL 844
PL
Sbjct: 200 PL 201
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAIKDVL 358
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NP LKTLL++G
Sbjct: 55 LYDTLNTLKNRNPNLKTLLSVG 76
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAVPA AI GYD+ +IS++LDFI+++TYDFHG W VGH+SPL
Sbjct: 148 TEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 292 bits (748), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 216/349 (61%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP +K LL++GGW FG F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G RLLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL G + + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPL--FRGNSDASSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRSFTL +K D GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSFTLAS-SKTDGGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTALVKEMKAEFARE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G RLLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NPKLKTLL++G
Sbjct: 55 LYDTLNTLKNRNPKLKTLLSVG 76
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 218/349 (62%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP +K LL++GGW FG F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G +LLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL + E A+S + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS--RFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRSFTL +K D+GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTTLVKEMKAEFIRE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G +LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I+ F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NPKLKTLL++G
Sbjct: 55 LYDTLNTLKNRNPKLKTLLSVG 76
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFA 38
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 291 bits (746), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 215/349 (61%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP +K LL++GGW FG F + F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G +LLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL G + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPL--FAGNEDASSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRSFTL +K D+GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F + F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTTLVKEMKAEFIRE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G +LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NPKLKTLL++G
Sbjct: 55 LYDTLNTLKNRNPKLKTLLSVG 76
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 215/349 (61%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP +K LL++GGW FG F + F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G RLLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL G + + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPL--FRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRSFTL +K D GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSFTLAS-SKTDGGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 785
F + F+ FLR H F+GLD+ W YP G D+ L+KE++ F E
Sbjct: 85 FSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKRHLTALVKEMKAEFARE 143
Query: 786 AKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
A+ +G RLLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 144 AQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAVKDVL 358
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NPKLKTLL++G
Sbjct: 55 LYDTLNTLKNRNPKLKTLLSVG 76
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 216/349 (61%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP++K LL++GGW FGS F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ L+KE++ F EA+ +G +LLL+AAV A AI GYD+ +IS++L
Sbjct: 120 YP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W VGH+SPL G + + + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGGWRGTVGHHSPL--FRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRS+TL + +GAP SG G PG++T E G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSYTLASSST-RVGAPISGPGIPGQFTKEKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 782
S F ++ F+ FLR H F+GLD+ W YP G D+ L+KE++ F
Sbjct: 82 SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GWRDKRHLTTLVKEMKAEF 140
Query: 783 EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNS 842
EA+ +G +LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W VGH+S
Sbjct: 141 VREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHS 199
Query: 843 PL 844
PL
Sbjct: 200 PL 201
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAIKDVL 358
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND T
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVT------ 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NP LKTLL++G
Sbjct: 55 LYDTLNTLKNRNPNLKTLLSVG 76
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W VGH+SPL
Sbjct: 148 TEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 220/349 (63%), Gaps = 11/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ IDP LCTHVIY+F + ++++ + E ++ ++ L
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI---DTWEWNDVTLYDTL 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP++K LL++GGW +GS F ++ F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
+P G D+ L+KE++ F EA+ +G +LLL+AAV A AI GYD+ +IS++L
Sbjct: 120 WP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIG 617
DFI+++TYDFHG W + VGH+SPL + E A+S + +Y+ ++ GAP KL++G
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS--RFSNADYAVSYMLRLGAPANKLVMG 235
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQ 677
+PT+GRS+TL +K D+GAP SG G PG++T G ++YYE+CDFL T D Q
Sbjct: 236 IPTFGRSYTLAS-SKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLHGATTHRFRD--Q 292
Query: 678 QVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
QVP+A K +QWV +DD+ S+K K +LK G M+W++D+DD F
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTF 341
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 2/122 (1%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 782
S F ++ F+ FLR H F+GLD+ W +P G D+ L+KE++ F
Sbjct: 82 SQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWP-GWRDKRHLTTLVKEMKAEF 140
Query: 783 EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNS 842
EA+ +G +LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+S
Sbjct: 141 VREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHS 199
Query: 843 PL 844
PL
Sbjct: 200 PL 201
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ L + + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+D
Sbjct: 277 ICDFLHGATTHRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT CG ++ +PL A+++ L
Sbjct: 336 DFRGTFCGQNLTFPLTSAIKDVL 358
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VT 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY+ + LK NP LKTLL++G
Sbjct: 55 LYDTLNTLKNRNPNLKTLLSVG 76
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 868 TVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
T LLL+AAV A AI GYD+ +IS++LDFI+++TYDFHG W + VGH+SPL
Sbjct: 148 TEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPL 201
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ IDP LCTHVIY+ +
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFA 38
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 286 bits (732), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 216/348 (62%), Gaps = 8/348 (2%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY TSWSQ R G G P+ +D LCTH+IY+F + + + + E ++ + L
Sbjct: 3 LVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHI---DTWEWNDVTLYGML 59
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L+ +NP++K LL++GGW FGS F ++ N F+ FLR H F+GLD+ W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 558
YP G D+ + L+KE++ F EA+ G+ +LLL+AA+ A I + YD+ +IS++L
Sbjct: 120 YP-GRRDKQHFTTLIKEMKAEFIKEAQ-PGKKQLLLSAALSAGKVTIDSSYDIAKISQHL 177
Query: 559 DFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGM 618
DFI++MTYDFHG W GH+SPL + S + +Y+ ++ GAP KL++G+
Sbjct: 178 DFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGI 237
Query: 619 PTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQ 678
PT+GRSFTL ++ +GAP SG G PG++T EAG ++YYE+CDFL+ + QQ
Sbjct: 238 PTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLRGATVHRILG--QQ 294
Query: 679 VPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF 726
VP+A K +QWVG+DD+ S+K K+ +LK+ G M+W++D+DD F
Sbjct: 295 VPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 342
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 782
S F ++ N F+ FLR H F+GLD+ W YP G D+ + L+KE++ F
Sbjct: 82 SQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYP-GRRDKQHFTTLIKEMKAEF 140
Query: 783 EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNS 842
EA+ G+ +LLL+AA+ A I + YD+ +IS++LDFI++MTYDFHG W GH+S
Sbjct: 141 IKEAQ-PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHS 199
Query: 843 PL 844
PL
Sbjct: 200 PL 201
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+C+ LR GA +VPY G+QWVG+DD++S++ K+ +LKD GAMVW +D+D
Sbjct: 278 ICDFLR-GATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLD 336
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF G+ CG D+++PL A+++ L
Sbjct: 337 DFQGSFCGQDLRFPLTNAIKDAL 359
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
Y++VCYYT+WSQYR G P+ ++ LCTHII++F + + ++E ND T
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWNDVT------ 54
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
LY + LK NP LKTLL++G
Sbjct: 55 LYGMLNTLKNRNPNLKTLLSVG 76
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
LLL+AA+ A I + YD+ +IS++LDFI++MTYDFHG W GH+SPL
Sbjct: 151 LLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPL 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALS 256
+ CY TSWSQ R G G P+ +D LCTH+IY+ +
Sbjct: 3 LVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFA 38
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 20/336 (5%)
Query: 393 AGKFGPENIDPKLCTHVIYAFGTL--KDHKLTLNEDKEKDEAGKFEALMQ-LREKNPDIK 449
A +F +ID L TH+ AF L + +++T++ + KF Q ++ +NP +K
Sbjct: 13 ASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQP----KFSTFTQTVQRRNPSVK 68
Query: 450 ILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASY 509
LL+IGG T + + N F+ SI R + F+GLD+DWEYP A + ++
Sbjct: 69 TLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATEMTNF 128
Query: 510 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFH 569
LL+E R A EA +SG+PRLLL AAV S + Y V ++ LD++N+M YDF+
Sbjct: 129 GTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFY 188
Query: 570 G-QWERQVGHNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTL 627
G W R G + L P S + + W++ G P +K ++G P YG ++ L
Sbjct: 189 GPGWSRVTGPPAALFDPSNAGPS------GDAGTRSWIQAGLPAKKAVLGFPYYGYAWRL 242
Query: 628 VDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQ 687
+ AP +G + G + Y ++ F+ + T V+++ + Y
Sbjct: 243 TNANSHSYYAPTTGAA-----ISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTN 297
Query: 688 WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
W+G+DD +S+ K+ + K+ G G W V DD S
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNS 333
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 724 TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFE 783
T + + N F+ SI R + F+GLD+DWEYP A + ++ LL+E R A
Sbjct: 81 TAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATEMTNFGTLLREWRSAVV 140
Query: 784 GEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG-QWERQVG 839
EA +SG+PRLLL AAV S + Y V ++ LD++N+M YDF+G W R G
Sbjct: 141 AEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWSRVTG 197
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 264 MLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 323
++ NGA V++ + Y G W+G+DD +SI K+ + K G G W V DD +
Sbjct: 274 IVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNS 333
Query: 324 G 324
G
Sbjct: 334 G 334
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG-QWERQVG 916
LLL AAV S + Y V ++ LD++N+M YDF+G W R G
Sbjct: 151 LLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWSRVTG 197
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 162/327 (49%), Gaps = 17/327 (5%)
Query: 399 ENIDPKLCTHVIYAFGTL--KDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGG 456
NID L TH+ AF L + ++L ++ + + D +F + +Q KNP +K L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQ-DSFRQFTSTVQ--RKNPSVKTFLSIAG 74
Query: 457 WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKEL 516
ST + + F+ SI R+ F+GLD+DWEYP A D + LL E
Sbjct: 75 GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAADMTNLGTLLNEW 134
Query: 517 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG-QW--E 573
R A EA+ SG LLLTAAV S Y V +++ LD+IN+M YDF+G W
Sbjct: 135 RTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGPNWSPS 194
Query: 574 RQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKF 633
+ H P+ ++ W++ G P +KL++G+P YG ++ LV+
Sbjct: 195 QTNSHAQLFDPVN-------HVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIH 247
Query: 634 DIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVGFDD 693
+ APA+G G + G M+Y + D++ + T V++ + Y W+ +DD
Sbjct: 248 GLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDD 305
Query: 694 ERSLKMKMDWLKEDGYGGIMIWSVDMD 720
++++ K++++K G G W V D
Sbjct: 306 TQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 55/94 (58%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTA 798
F+ SI R+ F+GLD+DWEYP A D + LL E R A EA+ SG LLLTA
Sbjct: 95 FIDSSIRLARQLGFHGLDLDWEYPLSAADMTNLGTLLNEWRTAINTEARNSGRAALLLTA 154
Query: 799 AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 832
AV S Y V +++ LD+IN+M YDF+G
Sbjct: 155 AVSNSPRVNGLNYPVESLARNLDWINLMAYDFYG 188
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 909
LLLTAAV S Y V +++ LD+IN+M YDF+G
Sbjct: 150 LLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYG 188
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 233 PGAGKFGPENIDPKLCTHVIYALSTPRRVCE-MLRNGAGYVWDDEMKVPYLVHGDQWVGF 291
P AGK +D T+ R+ + ++ + A V++ + Y G W+ +
Sbjct: 252 PAAGKSNVGAVDDGSMTY--------NRIRDYIVESRATTVYNATIVGDYCYSGSNWISY 303
Query: 292 DDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
DD +++R K+N++K G G W V D
Sbjct: 304 DDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 17/327 (5%)
Query: 399 ENIDPKLCTHVIYAFGTL--KDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGG 456
NID L TH+ AF L + ++L ++ + + D +F + +Q KNP +K L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQ-DSFRQFTSTVQ--RKNPSVKTFLSIAG 74
Query: 457 WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKEL 516
ST + + F+ SI R+ F+GLD+DW+YP A D + LL E
Sbjct: 75 GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAADMTNLGTLLNEW 134
Query: 517 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG-QW--E 573
R A EA+ SG LLLTAAV S Y V +++ LD+IN+M YDF+G W
Sbjct: 135 RTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGPNWSPS 194
Query: 574 RQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKF 633
+ H P+ ++ W++ G P +KL++G+P YG ++ LV+
Sbjct: 195 QTNSHAQLFDPVN-------HVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIH 247
Query: 634 DIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVGFDD 693
+ APA+G G + G M+Y + D++ + T V++ + Y W+ +DD
Sbjct: 248 GLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDD 305
Query: 694 ERSLKMKMDWLKEDGYGGIMIWSVDMD 720
++++ K++++K G G W V D
Sbjct: 306 TQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 55/94 (58%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTA 798
F+ SI R+ F+GLD+DW+YP A D + LL E R A EA+ SG LLLTA
Sbjct: 95 FIDSSIRLARQLGFHGLDLDWQYPLSAADMTNLGTLLNEWRTAINTEARNSGRAALLLTA 154
Query: 799 AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 832
AV S Y V +++ LD+IN+M YDF+G
Sbjct: 155 AVSNSPRVNGLNYPVESLARNLDWINLMAYDFYG 188
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 909
LLLTAAV S Y V +++ LD+IN+M YDF+G
Sbjct: 150 LLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYG 188
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 233 PGAGKFGPENIDPKLCTHVIYALSTPRRVCE-MLRNGAGYVWDDEMKVPYLVHGDQWVGF 291
P AGK +D T+ R+ + ++ + A V++ + Y G W+ +
Sbjct: 252 PAAGKSNVGAVDDGSMTY--------NRIRDYIVESRATTVYNATIVGDYCYSGSNWISY 303
Query: 292 DDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
DD +++R K+N++K G G W V D
Sbjct: 304 DDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 158/305 (51%), Gaps = 21/305 (6%)
Query: 432 AGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFN 491
AG L +L++ NP++K ++++GGW + S F ++ F +++FLR++ F+
Sbjct: 107 AGNINQLNKLKQTNPNLKTIISVGGWTW-SNRFSDVAATAATREVFANSAVDFLRKYNFD 165
Query: 492 GLDVDWEYP---------RGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWEYP + +D+ +Y LL ++R + G+ + LLT A AS
Sbjct: 166 GVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGK-KYLLTIASGAS- 223
Query: 543 EAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLK--PLEGATSY--QKKLTVE 598
AA ++ +I+ +D+IN+MTYDF+G W++ HN+PL P A V
Sbjct: 224 ATYAANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVA 283
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
A+ + G P KL++G+P YGR + +GG G T EAG +Y
Sbjct: 284 AGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFY 341
Query: 659 EV-CDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIW 715
++ +++ K+ T W++ +VP+ Y + +++ +DD S+ K ++K G GG M W
Sbjct: 342 DLEANYINKNGYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFW 401
Query: 716 SVDMD 720
+ D
Sbjct: 402 ELSGD 406
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 24/249 (9%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP---------RGADDRASYVN 773
S F ++ F +++FLR++ F+G+D+DWEYP + +D+ +Y
Sbjct: 135 SNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTL 194
Query: 774 LLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ 833
LL ++R + G+ + LLT A AS AA ++ +I+ +D+IN+MTYDF+G
Sbjct: 195 LLSKIREKLDAAGAVDGK-KYLLTIASGAS-ATYAANTELAKIAAIVDWINIMTYDFNGA 252
Query: 834 WERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAA-----GY 888
W++ HN+PL + +P A ++ L A VPA+ + G+
Sbjct: 253 WQKISAHNAPLNYDPA--ASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGW 310
Query: 889 DVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEANVVSCEEEDGHISYHPDKADCT 948
D + + G WE + LEAN ++ ++G+ Y D A
Sbjct: 311 DGCAQAGNGQYQTCTGGSSVGTWE---AGSFDFYDLEANYIN---KNGYTRYWNDTAKVP 364
Query: 949 HYYMCEGER 957
+ Y +R
Sbjct: 365 YLYNASNKR 373
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 266 RNGAGYVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+NG W+D KVPYL + +++ +DD +S+ YK ++K G GGAM W + D
Sbjct: 350 KNGYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 49/126 (38%)
Query: 96 KYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG--------------------- 134
Y++V YY +W+ Y + DI+P THI +AF
Sbjct: 11 SYKIVGYYPSWAAYGR---NYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTW 67
Query: 135 ----------------------WLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLK 172
W+ GK + ++ D+ G + ++ +LK+ NP LK
Sbjct: 68 TCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNI---NQLNKLKQTNPNLK 124
Query: 173 TLLAIG 178
T++++G
Sbjct: 125 TIISVG 130
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 154/351 (43%), Gaps = 45/351 (12%)
Query: 395 KFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKD----------------EAGKFEAL 438
F P ++ HV+Y+F L+ + D D G + L
Sbjct: 36 NFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQL 95
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
+L++ N +KI+L+IGGW + ST F F ++EF+++ F+G+DVDWE
Sbjct: 96 YKLKKANRSLKIMLSIGGWTW-STNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWE 154
Query: 499 YPRGADDRASYVNLLKELRLAFEGEAKTSGEP-RLLLTAAVPASFEAIAAGYDV---PEI 554
YP D + V LL+ +R + + T L+ A PA + Y+V ++
Sbjct: 155 YPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAG----PSHYNVLKLAQL 210
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLE---GATSYQKKLTVEYSAKEWVKQGAPK 611
LD IN+M YD+ G W+ GH + L P +T + K V+ ++ G P
Sbjct: 211 GSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVD----AYIAAGVPA 266
Query: 612 EKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTL 671
K+++GMP YGR+F D G P S GE G + E+G Y L K T+
Sbjct: 267 SKIILGMPIYGRAFVGTDGP----GKPYSTIGE-GSW--ESGIWDY----KVLPKAGATV 315
Query: 672 VWDNEQQVPFAYKDDQ--WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+ D+ ++Y + +D ++ K+ + K G GG M W D
Sbjct: 316 ITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 664 LKKDNTTLVWDNEQQVPFAYKDDQW--VGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
L+ D T D + Y DD W +G + +K K + IM+ S+
Sbjct: 57 LRVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIML-SIGGWT 115
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLA 781
ST F F ++EF+++ F+G+DVDWEYP D + V LL+ +R
Sbjct: 116 WSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQE 175
Query: 782 FEGEAKTSGEP-RLLLTAAVPASFEAIAAGYDV---PEISKYLDFINVMTYDFHGQWERQ 837
+ + T L+ A PA + Y+V ++ LD IN+M YD+ G W+
Sbjct: 176 LDSYSATYANGYHFQLSIAAPAG----PSHYNVLKLAQLGSVLDNINLMAYDYAGSWDSV 231
Query: 838 VGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPAS 880
GH + L P + S P +T + K VD + A VPAS
Sbjct: 232 SGHQTNLYP-------STSNPSSTPFSTKAAVDAYIAAGVPAS 267
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 100 VCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLK----------KGKLSSFESNDE 149
Y+TNW Y FQP D++ H++++F L+ L S+D
Sbjct: 24 AVYFTNWGIYGRN---FQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDS 80
Query: 150 TKDGKVGLYERIEQL---KKANPKLKTLLAIG 178
D Y ++QL KKAN LK +L+IG
Sbjct: 81 WNDIGTNAYGCVKQLYKLKKANRSLKIMLSIG 112
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEAN 927
+ ++ LD IN+M YD+ G W+ GH + L P +N
Sbjct: 207 LAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSN 244
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 32/308 (10%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 251 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 308
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 309 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 367
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPL-----KPLEGATSYQKKL 595
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L KP T+Y
Sbjct: 368 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKP---DTAY---- 418
Query: 596 TVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFM 655
T + QG K+++G YGR +T V+ + +I + G P K T E G +
Sbjct: 419 TTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIV 477
Query: 656 SYYEVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIM 713
Y ++ +D + P+ +K + FDD RS++ K ++ + GG+
Sbjct: 478 DYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLF 537
Query: 714 IWSVDMDD 721
W +D D+
Sbjct: 538 SWEIDADN 545
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 277 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 335
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 336 VLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 392
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 393 YGAFDLKNLGHQTAL 407
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 259 RRVCEMLRNGA-GYVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMV 314
R++ +G Y +D + PY+ GD + FDD +S++ K ++ D GG
Sbjct: 480 RQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVLDKQLGGLFS 538
Query: 315 WTVDMDD 321
W +D D+
Sbjct: 539 WEIDADN 545
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 168/370 (45%), Gaps = 34/370 (9%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK-DHKLTLNE---DKEK------- 429
Y +W+ G P+++ TH++YAF ++ ++ L++ D +K
Sbjct: 7 VYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKW 63
Query: 430 DEAGK-----FEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEF 484
DE G + + L++ N ++K LL+IGGW + S FK +F S++
Sbjct: 64 DEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLKL 122
Query: 485 LREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLLTAAVPASFE 543
+++ F+G+D+DWEYP +V LLK R A + AK + LLT A PA +
Sbjct: 123 MKDLGFDGIDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ 182
Query: 544 AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKE 603
+ E+ KYLDF N+M YDF G W++ GH S + P + + + K+
Sbjct: 183 NYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-STTKPESTPFSSDKAVKD 240
Query: 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDF 663
++K G P K+++GMP YGR+F D G E G + + +V +
Sbjct: 241 YIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTE- 299
Query: 664 LKKDNTTLVWDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
L+ + +D ++ +Y D + K +++ ++G GG M W D
Sbjct: 300 LEDIAASYSYDKNKRYLISY--------DTVKIAGKKAEYITKNGMGGGMWWESSSD--K 349
Query: 724 TPFKELTGNV 733
T + L G V
Sbjct: 350 TGNESLVGTV 359
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLL 796
+F S++ +++ F+G+D+DWEYP +V LLK R A + AK + LL
Sbjct: 114 KFADTSLKLMKDLGFDGIDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLL 173
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLS 856
T A PA + + E+ KYLDF N+M YDF G W++ GH S + P + +
Sbjct: 174 TIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-------STT 225
Query: 857 IPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFH----GQWE 912
P +T + V + A VPA+ I G +P + + + F+ G WE
Sbjct: 226 KPESTPFSSDKAVKDYIKAGVPAN--KIVLG--MPLYGRAFASTDGIGTSFNGVGGGSWE 281
Query: 913 RQVGHNSPLKPLEANVVSCEEEDGHISYHPDKADCTHY 950
V + A V E+ SY +K Y
Sbjct: 282 NGVWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISY 319
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSS 143
+R V Y+ NW+ Y P+D++ D THI++AF W K
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 144 FESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
+ DE + G +++ LKK N LKTLL+IG
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIG 94
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIASQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPLKPLEVLLITTLSIPG---ATSYQKKLTVDLLLTAAV-PASFEAIA 885
+G ++ + +GH T L+ P T+Y V+ LLT V P
Sbjct: 370 YGAFDLKNLGHQ-----------TALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGT 418
Query: 886 AGY-----DVPEISKYLDFINVMTYDFHGQWERQV 915
A Y V + F T G WE +
Sbjct: 419 AMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGI 453
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 259 RRVCEMLRNGA-GYVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMV 314
R++ +G Y +D + PY+ GD + FDD +S++ K ++ D GG
Sbjct: 457 RQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 315 WTVDMDD 321
W +D D+
Sbjct: 516 WEIDADN 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIASQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPLKPLEVLLITTLSIPG---ATSYQKKLTVDLLLTAAV-PASFEAIA 885
+G ++ + +GH T L+ P T+Y V+ LLT V P
Sbjct: 370 YGAFDLKNLGHQ-----------TALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGT 418
Query: 886 AGY-----DVPEISKYLDFINVMTYDFHGQWERQV 915
A Y V + F T G WE +
Sbjct: 419 AMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGI 453
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 259 RRVCEMLRNGA-GYVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMV 314
R++ +G Y +D + PY+ GD + FDD +S++ K ++ D GG
Sbjct: 457 RQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 315 WTVDMDD 321
W +D D+
Sbjct: 516 WEIDADN 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSTETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKF-N 491
G + LM L+++NPD+KI+ +IGGW S PF + R + FV +FL+ KF +
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGWTL-SDPFYDFVDKKNR-DTFVASVKKFLKTWKFYD 287
Query: 492 GLDVDWEYPRG----------ADDRASYVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPA 540
G+D+DWE+P G +D +Y+ L++ELR+ E EA+T LT+A+
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETG--RTYELTSAIGV 345
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL------KPLE-------- 586
++ I D + +Y+D+I MTYDF+G W GH + L +P +
Sbjct: 346 GYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDE 404
Query: 587 -GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP-TKFDIGAPASGG-- 642
G T + + + QG P KL++G YGR + V P T D P +G
Sbjct: 405 NGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTAT 464
Query: 643 ----GEPGKYTAEAGFMSYYEVCDFLKKDNTTLV------WDNEQQVPFAYK--DDQWVG 690
G + E G + Y + F+ N T + +D + + P+ + + +
Sbjct: 465 GKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELIT 524
Query: 691 FDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
FDD RS+ K ++ K G G+ W +D D+
Sbjct: 525 FDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRG----------ADDRAS 770
LS PF + R + FV +FL+ KF +G+D+DWE+P G +D +
Sbjct: 256 LSDPFYDFVDKKNR-DTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPA 314
Query: 771 YVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829
Y+ L++ELR+ E EA+T LT+A+ ++ I D + +Y+D+I MTYD
Sbjct: 315 YIALMRELRVMLDELEAETG--RTYELTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYD 371
Query: 830 FHGQWERQVGHNSPL 844
F+G W GH + L
Sbjct: 372 FYGGWNNVPGHQTAL 386
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 873 LTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
LT+A+ ++ I D + +Y+D+I MTYDF+G W GH + L
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTAL 386
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 267 NGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 324
NG Y +D + + P++ + + + FDD +S+ K N+ K G G W +D D+
Sbjct: 499 NGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN--- 555
Query: 325 TVCGGDVKYPLIGAMREELNG 345
GD+ + AM E + G
Sbjct: 556 ----GDI----LNAMHEGMAG 568
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 168/370 (45%), Gaps = 34/370 (9%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK-DHKLTLNE---DKEK------- 429
Y +W+ G P+++ TH++YAF ++ ++ L++ D +K
Sbjct: 7 VYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKW 63
Query: 430 DEAGK-----FEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEF 484
DE G + + L++ N ++K LL+IGGW + S FK +F S++
Sbjct: 64 DEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLKL 122
Query: 485 LREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLLTAAVPASFE 543
+++ F+G+D+DW+YP +V LLK R A + AK + LLT A PA +
Sbjct: 123 MKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ 182
Query: 544 AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKE 603
+ E+ KYLDF N+M YDF G W++ GH S + P + + + K+
Sbjct: 183 NYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-STTKPESTPFSSDKAVKD 240
Query: 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDF 663
++K G P K+++GMP YGR+F D G E G + + +V +
Sbjct: 241 YIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTE- 299
Query: 664 LKKDNTTLVWDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
L+ + +D ++ +Y D + K +++ ++G GG M W D
Sbjct: 300 LEDIAASYSYDKNKRYLISY--------DTVKIAGKKAEYITKNGMGGGMWWESSSD--K 349
Query: 724 TPFKELTGNV 733
T + L G V
Sbjct: 350 TGNESLVGTV 359
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLL 796
+F S++ +++ F+G+D+DW+YP +V LLK R A + AK + LL
Sbjct: 114 KFADTSLKLMKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLL 173
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLS 856
T A PA + + E+ KYLDF N+M YDF G W++ GH S + P + +
Sbjct: 174 TIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-------STT 225
Query: 857 IPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFH----GQWE 912
P +T + V + A VPA+ I G +P + + + F+ G WE
Sbjct: 226 KPESTPFSSDKAVKDYIKAGVPAN--KIVLG--MPLYGRAFASTDGIGTSFNGVGGGSWE 281
Query: 913 RQVGHNSPLKPLEANVVSCEEEDGHISYHPDKADCTHY 950
V + A V E+ SY +K Y
Sbjct: 282 NGVWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISY 319
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSS 143
+R V Y+ NW+ Y P+D++ D THI++AF W K
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 144 FESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
+ DE + G +++ LKK N LKTLL+IG
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIG 94
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 168/370 (45%), Gaps = 34/370 (9%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK-DHKLTLNE---DKEK------- 429
Y +W+ G P+++ TH++YAF ++ ++ L++ D +K
Sbjct: 7 VYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKW 63
Query: 430 DEAGK-----FEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEF 484
DE G + + L++ N ++K LL+IGGW + S FK +F S++
Sbjct: 64 DEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLKL 122
Query: 485 LREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLLTAAVPASFE 543
+++ F+G+D++WEYP +V LLK R A + AK + LLT A PA +
Sbjct: 123 MKDLGFDGIDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQ 182
Query: 544 AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKE 603
+ E+ KYLDF N+M YDF G W++ GH S + P + + + K+
Sbjct: 183 NYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-STTKPESTPFSSDKAVKD 240
Query: 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDF 663
++K G P K+++GMP YGR+F D G E G + + +V +
Sbjct: 241 YIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTE- 299
Query: 664 LKKDNTTLVWDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
L+ + +D ++ +Y D + K +++ ++G GG M W D
Sbjct: 300 LEDIAASYSYDKNKRYLISY--------DTVKIAGKKAEYITKNGMGGGMWWESSSD--K 349
Query: 724 TPFKELTGNV 733
T + L G V
Sbjct: 350 TGNESLVGTV 359
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLL 796
+F S++ +++ F+G+D++WEYP +V LLK R A + AK + LL
Sbjct: 114 KFADTSLKLMKDLGFDGIDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLL 173
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLS 856
T A PA + + E+ KYLDF N+M YDF G W++ GH S + P + +
Sbjct: 174 TIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFP-------STT 225
Query: 857 IPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFH----GQWE 912
P +T + V + A VPA+ I G +P + + + F+ G WE
Sbjct: 226 KPESTPFSSDKAVKDYIKAGVPAN--KIVLG--MPLYGRAFASTDGIGTSFNGVGGGSWE 281
Query: 913 RQVGHNSPLKPLEANVVSCEEEDGHISYHPDKADCTHY 950
V + A V E+ SY +K Y
Sbjct: 282 NGVWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISY 319
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSS 143
+R V Y+ NW+ Y P+D++ D THI++AF W K
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYP 59
Query: 144 FESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
+ DE + G +++ LKK N LKTLL+IG
Sbjct: 60 GDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIG 94
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DW++P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DW++P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M++DF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M++DF
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSFDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 47/331 (14%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKF-N 491
G + LM L+++NPD+KI+ +IGGW S PF + R + FV +FL+ KF +
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGWTL-SDPFYDFVDKKNR-DTFVASVKKFLKTWKFYD 287
Query: 492 GLDVDWEYPRG----------ADDRASYVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPA 540
G+D+DW +P G +D +Y+ L++ELR+ E EA+T LT+A+
Sbjct: 288 GVDIDWMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETG--RTYELTSAIGV 345
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL------KPLE-------- 586
++ I D + +Y+D+I MTYDF+G W GH + L +P +
Sbjct: 346 GYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDE 404
Query: 587 -GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP-TKFDIGAPASGG-- 642
G T + + + QG P KL++G YGR + V P T D P +G
Sbjct: 405 NGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTAT 464
Query: 643 ----GEPGKYTAEAGFMSYYEVCDFLKKDNTTLV------WDNEQQVPFAYKDD--QWVG 690
G + E G + Y + F+ N T + +D + + P+ + + +
Sbjct: 465 GKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELIT 524
Query: 691 FDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
FDD RS+ K ++ K G G+ W +D D+
Sbjct: 525 FDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRG----------ADDRAS 770
LS PF + R + FV +FL+ KF +G+D+DW +P G +D +
Sbjct: 256 LSDPFYDFVDKKNR-DTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPA 314
Query: 771 YVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829
Y+ L++ELR+ E EA+T LT+A+ ++ I D + +Y+D+I MTYD
Sbjct: 315 YIALMRELRVMLDELEAETG--RTYELTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYD 371
Query: 830 FHGQWERQVGHNSPL 844
F+G W GH + L
Sbjct: 372 FYGGWNNVPGHQTAL 386
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 873 LTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
LT+A+ ++ I D + +Y+D+I MTYDF+G W GH + L
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTAL 386
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 267 NGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 324
NG Y +D + + P++ + + + FDD +S+ K N+ K G G W +D D+
Sbjct: 499 NGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN--- 555
Query: 325 TVCGGDVKYPLIGAMREELNG 345
GD+ + AM E + G
Sbjct: 556 ----GDI----LNAMHEGMAG 568
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DW +P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIASQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DW +P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 259 RRVCEMLRNGA-GYVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMV 314
R++ +G Y +D + PY+ GD + FDD +S++ K ++ D GG
Sbjct: 457 RQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFS 515
Query: 315 WTVDMDD 321
W +D D+
Sbjct: 516 WEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+ WE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+YDF+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+ WE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+YDF
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYDF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 26/305 (8%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FN 491
G F LM L++ +PD+KIL +IGGW S PF G+ + ++FV EFL+ K F+
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTL-SDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 492 GLDVDWEYPRGA---------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 542
G+D+DWE+P G D +YV L+KELR + + +G + LT+A+ A
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 543 EAI-AAGYDVPEISKYLDFINVMTYDFHGQWE-RQVGHNSPLK--PLEGATSYQKKLTVE 598
+ I Y+V + S +D I +M+Y F+G ++ + +GH + L + T+Y T
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAY----TTV 398
Query: 599 YSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 658
+ QG K+++G YGR +T V+ + +I + G P K T E G + Y
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYR 457
Query: 659 EVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWS 716
++ +D + P+ +K + FDD RS++ K ++ + GG+ W
Sbjct: 458 QIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWE 517
Query: 717 VDMDD 721
+D D+
Sbjct: 518 IDADN 522
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRGA---------DDRASY 771
LS PF G+ + ++FV EFL+ KF +G+D+DWE+P G D +Y
Sbjct: 254 LSDPF-FFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETY 312
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDF 830
V L+KELR + + +G + LT+A+ A + I Y+V + S +D I +M+Y F
Sbjct: 313 VLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAYNVAQNS--MDHIFLMSYAF 369
Query: 831 HGQWE-RQVGHNSPL 844
+G ++ + +GH + L
Sbjct: 370 YGAFDLKNLGHQTAL 384
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 271 YVWDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
Y +D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 470 YTYDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 47/331 (14%)
Query: 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKF-N 491
G + LM L+++NPD+KI+ +IGG S PF + R + FV +FL+ KF +
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGGTL-SDPFYDFVDKKNR-DTFVASVKKFLKTWKFYD 287
Query: 492 GLDVDWEYPRG----------ADDRASYVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPA 540
G+D+DWE+P G +D +Y+ L++ELR+ E EA+T LT+A+
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETG--RTYELTSAIGV 345
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL------KPLE-------- 586
++ I D + +Y+D+I MTYDF+G W GH + L +P +
Sbjct: 346 GYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDE 404
Query: 587 -GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP-TKFDIGAPASGG-- 642
G T + + + QG P KL++G YGR + V P T D P +G
Sbjct: 405 NGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTAT 464
Query: 643 ----GEPGKYTAEAGFMSYYEVCDFLKKDNTTLV------WDNEQQVPFAYK--DDQWVG 690
G + E G + Y + F+ N T + +D + + P+ + + +
Sbjct: 465 GKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELIT 524
Query: 691 FDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
FDD RS+ K ++ K G G+ W +D D+
Sbjct: 525 FDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 16/144 (11%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKF-NGLDVDWEYPRG------- 764
+I S+ LS PF + R + FV +FL+ KF +G+D+DWE+P G
Sbjct: 247 IIPSIGGGTLSDPFYDFVDKKNR-DTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADK 305
Query: 765 ---ADDRASYVNLLKELRLAF-EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYL 820
+D +Y+ L++ELR+ E EA+T LT+A+ ++ I D + +Y+
Sbjct: 306 GDPVNDGPAYIALMRELRVMLDELEAETG--RTYELTSAIGVGYDKIED-VDYADAVQYM 362
Query: 821 DFINVMTYDFHGQWERQVGHNSPL 844
D+I MTYDF+G W GH + L
Sbjct: 363 DYIFAMTYDFYGGWNNVPGHQTAL 386
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 873 LTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
LT+A+ ++ I D + +Y+D+I MTYDF+G W GH + L
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTAL 386
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 267 NGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 324
NG Y +D + + P++ + + + FDD +S+ K N+ K G G W +D D+
Sbjct: 499 NGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN--- 555
Query: 325 TVCGGDVKYPLIGAMREELNG 345
GD+ + AM E + G
Sbjct: 556 ----GDI----LNAMHEGMAG 568
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 40/346 (11%)
Query: 398 PENIDPKLCTHVIYAFGTLKDHKLTLN-----------------EDKEKDEAGKFEALMQ 440
P+++ + THV+YAF ++ + D + G + L
Sbjct: 61 PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYL 120
Query: 441 LREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP 500
L+++N ++K+LL+IGGW + + + R N F +++ L++ F+GLD+DWEYP
Sbjct: 121 LKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKN-FAKTAVKLLQDLGFDGLDIDWEYP 179
Query: 501 RGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLD 559
+V LLKE+R A + A +G LLT A PA + I + + ++ + LD
Sbjct: 180 ENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQLD 238
Query: 560 FINVMTYDFHGQWERQVGH-----NSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
F N+M YD+ G + GH N PL + Q L + Y A G P K+
Sbjct: 239 FWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDL-YRAG-----GVPANKI 292
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMP YGRSF D G P +G G+ G + E G Y + ++ ++ D
Sbjct: 293 VLGMPLYGRSFANTDGP----GKPYNGVGQ-GSW--ENGVWDYKALPQAGATEH--VLPD 343
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+ + + +D+ + +K ++K G GG M W D
Sbjct: 344 IMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLL 796
F +++ L++ F+GLD+DWEYP +V LLKE+R A + A +G LL
Sbjct: 155 NFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLL 214
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLS 856
T A PA + I + + ++ + LDF N+M YD+ G + GH + + S
Sbjct: 215 TVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGH-------QANVYNDTS 266
Query: 857 IPGATSYQKKLTVDLLLTAAVPAS 880
P +T + + +DL VPA+
Sbjct: 267 NPLSTPFNTQTALDLYRAGGVPAN 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 92 KDDSKYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG--------------WLK 137
+ S YR V Y+ NW+ Y P+D+ + TH+++AF W
Sbjct: 38 RASSGYRSVVYFVNWAIYGRN---HNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 138 KGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
K +S +T + G +++ LKK N LK LL+IG
Sbjct: 95 IEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIG 135
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEANVVS 930
LLT A PA + I + + ++ + LDF N+M YD+ G + GH + + +N +S
Sbjct: 212 FLLTVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLS 270
Query: 931 C 931
Sbjct: 271 T 271
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 40/346 (11%)
Query: 398 PENIDPKLCTHVIYAFGTLKDHKLTLN-----------------EDKEKDEAGKFEALMQ 440
P+++ + THV+YAF ++ + D + G + L
Sbjct: 23 PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYL 82
Query: 441 LREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP 500
L+++N ++K+LL+IGGW + + + R N F +++ L++ F+GLD+DWEYP
Sbjct: 83 LKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKN-FAKTAVKLLQDLGFDGLDIDWEYP 141
Query: 501 RGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLD 559
+V LL+E+R A + A +G LLT A PA + I + ++ + LD
Sbjct: 142 ENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKV-LHLKDMDQQLD 200
Query: 560 FINVMTYDFHGQWERQVGH-----NSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
F N+M YD+ G + GH N PL + Q L + Y A G P K+
Sbjct: 201 FWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDL-YRAG-----GVPANKI 254
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++GMP YGRSF D G P +G G+ + E G Y + ++ ++ D
Sbjct: 255 VLGMPLYGRSFANTDGP----GKPYNGVGQG---SWENGVWDYKALPQAGATEH--VLPD 305
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+ + + +D+ + +K ++K G GG M W D
Sbjct: 306 IMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG-EAKTSGEPRLLL 796
F +++ L++ F+GLD+DWEYP +V LL+E+R A + A +G LL
Sbjct: 117 NFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLL 176
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLS 856
T A PA + I + ++ + LDF N+M YD+ G + GH + + S
Sbjct: 177 TVASPAGPDKIKV-LHLKDMDQQLDFWNLMAYDYAGSFSSLSGH-------QANVYNDTS 228
Query: 857 IPGATSYQKKLTVDLLLTAAVPAS 880
P +T + + +DL VPA+
Sbjct: 229 NPLSTPFNTQTALDLYRAGGVPAN 252
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 95 SKYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG--------------WLKKGK 140
S YR V Y+ NW+ Y P+D+ + TH+++AF W K
Sbjct: 3 SGYRSVVYFVNWAIYGRN---HNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEK 59
Query: 141 LSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
+S +T + G +++ LKK N LK LL+IG
Sbjct: 60 HYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIG 97
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 871 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEANVVS 930
LLT A PA + I + + ++ + LDF N+M YD+ G + GH + + +N +S
Sbjct: 174 FLLTVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLS 232
Query: 931 C 931
Sbjct: 233 T 233
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D+DWEYP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D+DWEYP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 169/391 (43%), Gaps = 61/391 (15%)
Query: 362 GNVEVETVTKPAPIKIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKL 421
GN+ +T+T C+M + +Q GP D + G D +
Sbjct: 47 GNINNQTLT----------CFMANKAQGT------GPNGSDGAGDAWADFGMGYAADKSV 90
Query: 422 TLNEDK-EKDEAGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYE 480
+ D ++ AG F L QL+ KNP +K+++++GGW + S F + + V
Sbjct: 91 SGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTW-SKNFSKAAATEASRQKLVSS 149
Query: 481 SIEFLREHK----------------FNGLDVDWEYP--------RGAD---DRASYVNLL 513
I+ + F+G+D+DWE+P G D DRA++ LL
Sbjct: 150 CIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALL 209
Query: 514 KELRLAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDFHGQW 572
E R + T+ + + +L+A +PA+ I A G+D P K LDF ++ YD HG W
Sbjct: 210 AEFRKQLDAYGSTNNK-KYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAW 268
Query: 573 ERQV-GHNSPL--KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVD 629
+ GH + L P + + KK + + + K+++ G ++L +G+ YGR +T
Sbjct: 269 NPTLTGHQANLYDDPAD-PRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGA- 326
Query: 630 PTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWV 689
PA+ G PG Y + E D LK T +D + Y QW
Sbjct: 327 -KNVSPWGPAT-DGAPGTYE------TANEDYDKLKTLGTDH-YDAATGSAWRYDGTQWW 377
Query: 690 GFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+D+ + K K D++ G GG M W + D
Sbjct: 378 SYDNIATTKQKTDYIVSKGLGGGMWWELSGD 408
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 752 FNGLDVDWEYP--------RGAD---DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAV 800
F+G+D+DWE+P G D DRA++ LL E R + T+ + + +L+A +
Sbjct: 175 FDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNK-KYVLSAFL 233
Query: 801 PASFEAI-AAGYDVPEISKYLDFINVMTYDFHGQWERQV-GHNSPL 844
PA+ I A G+D P K LDF ++ YD HG W + GH + L
Sbjct: 234 PANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANL 279
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 872 LLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDFHGQWERQV-GHNSPL 921
+L+A +PA+ I A G+D P K LDF ++ YD HG W + GH + L
Sbjct: 228 VLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANL 279
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 41/120 (34%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIE----PDLCTHIIFAFGWLKKGKLSSFESN----- 147
YR V Y+ W Y FQ + ++ THI ++FG + L+ F +N
Sbjct: 9 YRNVGYFAQWGVYGRA---FQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGT 65
Query: 148 ---------------------DETKDGK--------VGLYERIEQLKKANPKLKTLLAIG 178
D++ GK G + +++QLK NPKLK ++++G
Sbjct: 66 GPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLG 125
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 285 GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 343
G QW +D+ + + K +++ G GG M W + GD L+GAM ++
Sbjct: 373 GTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELS----------GDRNGELVGAMSDKF 421
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D+DWEYP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D+DWEYP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 86
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D+DWEYP+
Sbjct: 87 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQ 146
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 147 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 205
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 206 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 265
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 266 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 313
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 314 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 373
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 374 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 408
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D+DWEYP+ A+ ++ L+E+R + T G P
Sbjct: 121 KFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 179
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 180 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 229
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 335 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 386
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 387 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 420
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 198 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 229
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D+DW+YP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D+DW+YP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVDIDWQYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D++WEYP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D++WEYP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVDINWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+D++WEYP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+D++WEYP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVDINWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 165/395 (41%), Gaps = 85/395 (21%)
Query: 396 FGPENIDP---KLCTHVIYAFGTLKDH-----KLTLNEDKEKDEAGKFEALMQLREKNPD 447
F NI P K TH+ ++F + + N+ K +D + AL + NP
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTAL---KAHNPS 87
Query: 448 IKILLAIGGWAFGS------TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR 501
++I+ +IGGW + + + +F + ++++ F+G+++DWEYP+
Sbjct: 88 LRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQ 147
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGE---PRLLLTAAVPASFEAIAAGYDVPEISKYL 558
A+ ++ L+E+R + T G P L A +F + +I L
Sbjct: 148 AAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 559 DFINVMTYDFHGQWERQVGHNSPL-KPLEGATSYQK---------------------KLT 596
D+IN+MTYD G WE+ H + L G T Y LT
Sbjct: 207 DYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 597 VEYSAKE-WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAG-- 653
V+ + ++ + +G P K+++G+P YGR+F V GG G+Y++ +
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS------------GGNGGQYSSHSTPG 314
Query: 654 ------------------------FMSYYEVCDFLKKD-NTTLVWDNEQQVPFAY--KDD 686
SY ++ L+ + +W+++ + P+ Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNG 374
Query: 687 QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
+V +DD S K K ++K+ GG+M W + D+
Sbjct: 375 LFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE---PRL 794
+F + ++++ F+G+++DWEYP+ A+ ++ L+E+R + T G P
Sbjct: 122 KFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDG-FIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 795 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
L A +F + +I LD+IN+MTYD G WE+ H + L
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 244 DPKLCTHVIYALSTPRRVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRY 299
DP++ ++ R++ +ML+ GY +W+D+ K PYL H +V +DD +S +Y
Sbjct: 336 DPRIASY--------RQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKY 387
Query: 300 KMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKY 333
K ++K GG M W + D+ G + +Y
Sbjct: 388 KAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRY 421
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 890 VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
+ +I LD+IN+MTYD G WE+ H + L
Sbjct: 199 LAQIVAPLDYINLMTYDLAGPWEKVTNHQAAL 230
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 176/402 (43%), Gaps = 60/402 (14%)
Query: 378 DIFCYMTSWSQARPGAGKF-GPE-NIDPKLCTHVIYAFGTLKDHKL---TLNEDKEKDEA 432
++ CY S S R G GK P+ I + C+H++Y + L+ L ++NE+ + +
Sbjct: 3 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 62
Query: 433 GKFEALMQLREKNPDIKILLAIGGWA-----FGSTPFKELTGNVFRMNQFVYESIEFLRE 487
+F + L+ K P +K+LL++GG + L G R F+ + E ++
Sbjct: 63 -QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKT 121
Query: 488 HKFNGLDVDWEYPRGADDRASYVNL---LKELRLAFEGEAKTSGEPRL---LLTAAVPAS 541
+ F+GLD+ +++P+ R + +L K ++ F G+ L TA V
Sbjct: 122 YGFDGLDLAYQFPKNKP-RKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDV 180
Query: 542 FEAIAAG-----------------YDVPEISKYLDFINVMTYDFH--GQWERQVGHNSPL 582
+++ A +D+P ++ +DF+N+ T+DF + + +++P+
Sbjct: 181 KDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 583 KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPA--- 639
+G+ L ++ + W+ QG P K+ +G+ TYG ++ L + + G P
Sbjct: 241 YHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLE-GVPVVPE 299
Query: 640 -SGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQV-----------PFAYK--D 685
SG G + + G +SY E+C L + NE + AY+ D
Sbjct: 300 TSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVD 359
Query: 686 DQ-----WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDL 722
Q WV +DD S K + + GG+ ++ + DD
Sbjct: 360 GQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDF 401
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 99 VVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
+VCYY + S R +GK D+E L C+H+++ + L+ L ++ N E D
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMN-ENLDIYKH 62
Query: 157 LYERIEQLKKANPKLKTLLAIG 178
+ + LK+ P LK LL++G
Sbjct: 63 QFSEVTSLKRKYPHLKVLLSVG 84
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 288 WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 343
WV +DD S K + + GG ++ + DDF G C GD KYP++ A++ L
Sbjct: 367 WVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQ-CSGD-KYPILRAIKYRL 420
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 169/384 (44%), Gaps = 69/384 (17%)
Query: 399 ENIDPKLCTHVIYAFG------------TLKD----HKLTLNEDKEKDEAGKFEALMQLR 442
+ +D + TH+ Y+FG LKD H++ L+ + D + L LR
Sbjct: 47 DKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQAD----LQKLPALR 102
Query: 443 EKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP-R 501
++NPD+K+LL++GGW G+ F F+ + + ++++ +G+D+DWE+P
Sbjct: 103 KQNPDLKVLLSVGGW--GARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVN 160
Query: 502 GA--------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPE 553
GA DR ++ LLK LR A GE K L+T AV A+ E+ + DV
Sbjct: 161 GAWGLVASQPADRDNFTALLKSLREAV-GEQK-------LVTIAVGANAESPKSWVDVKA 212
Query: 554 ISKYLDFINVMTYD--FHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPK 611
++ L++IN+ TYD + Q+ ++S P A K + ++ ++ G
Sbjct: 213 VAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAAD---KYSADFVVNNYLAAGLKP 269
Query: 612 EKLMIGMPTYGR----------SFTLVDPTKFDIGAPASGGGEPGKYT------AEAGFM 655
+ +G+ YGR +T D + P G + + ++ ++
Sbjct: 270 SQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYV 329
Query: 656 SYYEVCDFLKKD---NTTLVWDNEQQVPFAYKDDQ------WVGFDDERSLKMKMDWLKE 706
Y ++ L D T WD+E +VP+ + +++ RS+ +K D++K
Sbjct: 330 KYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKA 389
Query: 707 DGYGGIMIWSVDMDDLSTPFKELT 730
G G W DD + ++L
Sbjct: 390 KGLAGAXFWEYGADDQNQLARQLA 413
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 17/100 (17%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYP-RGA--------DDRASYVNLLKELRLAFEGEAKTS 789
F+ + + ++++ +G+D+DWE+P GA DR ++ LLK LR A GE K
Sbjct: 135 FIRSAQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAV-GEQK-- 191
Query: 790 GEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829
L+T AV A+ E+ + DV ++ L++IN+ TYD
Sbjct: 192 -----LVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYD 226
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 273 WDDEMKVPYL-VHGDQW-----VGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
WDDE KVP+L V + + +++ +S+ K +++K G GA W DD
Sbjct: 350 WDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 147/339 (43%), Gaps = 32/339 (9%)
Query: 427 KEKDEAGKFEALMQLREK----NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESI 482
++ AG L +L++K + + +IGGW+ S+ F L N FV +
Sbjct: 187 QQNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVV 245
Query: 483 EF-LREHKFNGLDVDWEYPRGADDRA---------SYVNLLKELRLAFEGEAKTSGEPRL 532
+F +R F+ +D+DWEYP G D +YV L+KELR A + S R
Sbjct: 246 DFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSN--RX 303
Query: 533 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ-WERQVGHNSPL-KPLEGATS 590
++ A + ++ LD I +M+YDF G W +GH++ L P +
Sbjct: 304 EISIACSGVXAXLKKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQ 363
Query: 591 YQKKLTVEYSAKEWVKQ--GAPKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GG 643
L+ E +A +++ G P E + +G YGRS D T ++ PA G G
Sbjct: 364 ELFDLSAE-AAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 644 EPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKD--DQWVGFDDERSLKMKM 701
P + +M E + K+ L+ D F + + ++ D R++K K
Sbjct: 423 APEFFDIVXNYMD-AEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKG 481
Query: 702 DWLKEDGYGGIMIWSVDMDD--LSTPFKELTGNVFRMNQ 738
++ ++ GG+ WS D D L+ +E G V NQ
Sbjct: 482 EYAAKNKLGGVFSWSGDQDCGLLANAAREGLGYVADSNQ 520
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEF-LREHKFNGLDVDWEYPRGADDRA-- 769
+ +S+ LS+ F L N FV ++F +R F+ +D+DWEYP G D
Sbjct: 214 LAFSIGGWSLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 770 -------SYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDF 822
+YV L+KELR A + S R ++ A + ++ LD
Sbjct: 274 SSDXDGENYVLLIKELRSALDSRFGYSN--RXEISIACSGVXAXLKKSNIDQLVANGLDN 331
Query: 823 INVMTYDFHGQ-WERQVGHNSPL 844
I +M+YDF G W +GH++ L
Sbjct: 332 IYLMSYDFFGTIWADYIGHHTNL 354
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 146/339 (43%), Gaps = 32/339 (9%)
Query: 427 KEKDEAGKFEALMQLREK----NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESI 482
++ AG L +L+ K + + +IGGW+ S+ F L N FV +
Sbjct: 187 QQNRAAGLLGGLRELQXKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVV 245
Query: 483 EF-LREHKFNGLDVDWEYPRGADDRA---------SYVNLLKELRLAFEGEAKTSGEPRL 532
+F +R F+ +D+DWEYP G D +YV L+KELR A + S R
Sbjct: 246 DFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSN--RX 303
Query: 533 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ-WERQVGHNSPL-KPLEGATS 590
++ A + ++ LD I +M+YDF G W +GH++ L P +
Sbjct: 304 EISIACSGVXAXLKXSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQ 363
Query: 591 YQKKLTVEYSAKEWVKQ--GAPKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GG 643
L+ E +A +++ G P EK+ +G YGRS D T ++ PA G G
Sbjct: 364 ELFDLSAE-AAIDYLHNELGIPMEKIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 644 EPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKD--DQWVGFDDERSLKMKM 701
P + +M E + K+ L+ D F + + ++ D R++ K
Sbjct: 423 APEFFDIVXNYMD-AEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKG 481
Query: 702 DWLKEDGYGGIMIWSVDMDD--LSTPFKELTGNVFRMNQ 738
++ ++ GG+ WS D D L+ +E G V NQ
Sbjct: 482 EYAAKNKLGGVFSWSGDQDCGLLANAAREGLGYVADSNQ 520
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEF-LREHKFNGLDVDWEYPRGADDRA-- 769
+ +S+ LS+ F L N FV ++F +R F+ +D+DWEYP G D
Sbjct: 214 LAFSIGGWSLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 770 -------SYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDF 822
+YV L+KELR A + S R ++ A + ++ LD
Sbjct: 274 SSDXDGENYVLLIKELRSALDSRFGYSN--RXEISIACSGVXAXLKXSNIDQLVANGLDN 331
Query: 823 INVMTYDFHGQ-WERQVGHNSPL 844
I +M+YDF G W +GH++ L
Sbjct: 332 IYLMSYDFFGTIWADYIGHHTNL 354
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 144/341 (42%), Gaps = 36/341 (10%)
Query: 427 KEKDEAGKFEALMQLREK----NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESI 482
++ AG L +L++K + + +IGGW+ S+ F L N FV +
Sbjct: 187 QQNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVV 245
Query: 483 EF-LREHKFNGLDVDWEYPRGADDRA---------SYVNLLKELRLAFEGEAKTSGEPRL 532
+F +R F+ +D+DWEYP G D +YV L+KELR A + S R
Sbjct: 246 DFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSN--RX 303
Query: 533 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ-WERQVGHN----SPLKPLEG 587
++ A + ++ LD I +M+YDF G W +GH+ SP P E
Sbjct: 304 EISIACSGVXAXLKKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQ 363
Query: 588 AT-SYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG--- 641
+ ++Y E G P E + +G YGRS D T ++ PA G
Sbjct: 364 ELFDLSAEAAIDYLHNEL---GIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTME 420
Query: 642 GGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKD--DQWVGFDDERSLKM 699
G P + +M E + K+ L+ D F + + ++ D R++K
Sbjct: 421 NGAPEFFDIVKNYMD-AEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQ 479
Query: 700 KMDWLKEDGYGGIMIWSVDMDD--LSTPFKELTGNVFRMNQ 738
K ++ ++ GG+ WS D D L+ +E G V NQ
Sbjct: 480 KGEYAAKNKLGGVFSWSGDQDCGLLANAAREGLGYVADSNQ 520
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEF-LREHKFNGLDVDWEYPRGADDRA-- 769
+ +S+ LS+ F L N FV ++F +R F+ +D+DWEYP G D
Sbjct: 214 LAFSIGGWSLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 770 -------SYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDF 822
+YV L+KELR A + S R ++ A + ++ LD
Sbjct: 274 SSDKDGENYVLLIKELRSALDSRFGYSN--RXEISIACSGVXAXLKKSNIDQLVANGLDN 331
Query: 823 INVMTYDFHGQ-WERQVGHNSPL 844
I +M+YDF G W +GH++ L
Sbjct: 332 IYLMSYDFFGTIWADYIGHHTNL 354
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 32/339 (9%)
Query: 427 KEKDEAGKFEALMQLREK----NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESI 482
++ AG L +L++K + + +IGGW+ S+ F L N FV +
Sbjct: 187 QQNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVV 245
Query: 483 EF-LREHKFNGLDVDWEYPRGADDRA---------SYVNLLKELRLAFEGEAKTSGEPRL 532
+F +R F+ +D+DWEYP G D +YV L+ ELR A + S R
Sbjct: 246 DFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSN--RX 303
Query: 533 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ-WERQVGHNSPL-KPLEGATS 590
++ A + ++ LD I +M+YDF G W +GH++ L P +
Sbjct: 304 EISIACSGVXAXLKXSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQ 363
Query: 591 YQKKLTVEYSAKEWVKQ--GAPKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GG 643
L+ E +A +++ G P E + +G YGRS D T ++ PA G G
Sbjct: 364 ELFDLSAE-AAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENG 422
Query: 644 EPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKD--DQWVGFDDERSLKMKM 701
P + +M E + K+ L+ D F + + ++ D R++K K
Sbjct: 423 APEFFDIVKNYMD-AEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKG 481
Query: 702 DWLKEDGYGGIMIWSVDMDD--LSTPFKELTGNVFRMNQ 738
++ ++ GG+ WS D D L+ +E G V NQ
Sbjct: 482 EYAAKNKLGGVFSWSGDQDCGLLANAAREGLGYVADSNQ 520
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEF-LREHKFNGLDVDWEYPRGADDRA-- 769
+ +S+ LS+ F L N FV ++F +R F+ +D+DWEYP G D
Sbjct: 214 LAFSIGGWSLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNI 273
Query: 770 -------SYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDF 822
+YV L+ ELR A + S R ++ A + ++ LD
Sbjct: 274 SSDXDGENYVLLIXELRSALDSRFGYSN--RXEISIACSGVXAXLKXSNIDQLVANGLDN 331
Query: 823 INVMTYDFHGQ-WERQVGHNSPL 844
I +M+YDF G W +GH++ L
Sbjct: 332 IYLMSYDFFGTIWADYIGHHTNL 354
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 58/332 (17%)
Query: 424 NEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIE 483
N++K K G F L E + +++ L+IGGW+ S F E+ + FV E I+
Sbjct: 189 NQEKAKGLLGGFRLL---HEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFV-EGIK 243
Query: 484 --FLREHKFNGLDVDWEYP--------RGADDRASYVNLLKELRLAFEGEAK-----TSG 528
F R F+ LD+DWEYP DD A++ L++++ A K +S
Sbjct: 244 DFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSA 303
Query: 529 EPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL--KPLE 586
+P + A +PA +A G IN+MTYDF + ++ H++ + P +
Sbjct: 304 DPAKIDAANIPALMDAGVTG------------INLMTYDFFTLGDGKLSHHTNIYRDPSD 351
Query: 587 GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPG 646
+ Y V + E K+ PK + IG Y R+ T + S G
Sbjct: 352 VYSKYSIDDAVTHLIDE--KKVDPK-AIFIGYAGYTRNAKNATITT----SIPSEEALKG 404
Query: 647 KYTAEAGFMSYYE---------VCDFLK------KDNTTLVWDNEQQVPFAYKDDQ--WV 689
YT + +E +C ++ ++ LV D + + Y + ++
Sbjct: 405 TYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFI 464
Query: 690 GFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
D RS++ K ++K+ G GG+ IWS D D+
Sbjct: 465 SLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIE--FLREHKFNGLDVDWEY--------PRGADDRASY 771
+S F E+ + FV E I+ F R F+ LD+DWEY P DD A++
Sbjct: 221 MSGLFSEIAKDEILRTNFV-EGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANF 279
Query: 772 VNLLKELRLAFEGEAK-----TSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVM 826
L++++ A K +S +P + A +PA +A G IN+M
Sbjct: 280 AILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTG------------INLM 327
Query: 827 TYDFHGQWERQVGHNSPL 844
TYDF + ++ H++ +
Sbjct: 328 TYDFFTLGDGKLSHHTNI 345
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 266 RNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
RNG V D K YL ++ D +S+R K ++KD G GG +W+ D D+
Sbjct: 439 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 92 KDDSKYRVVCYYTNWSQYRTKI 113
+DD + V+CY+T+WSQY +I
Sbjct: 67 EDDDDFNVLCYFTDWSQYDPRI 88
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 58/332 (17%)
Query: 424 NEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIE 483
N++K K G F L E + +++ L+IGGW+ S F E+ + FV E I+
Sbjct: 217 NQEKAKGLLGGFRLL---HEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFV-EGIK 271
Query: 484 --FLREHKFNGLDVDWEYP--------RGADDRASYVNLLKELRLAFEGEAK-----TSG 528
F R F+ LD+DWEYP DD A++ L++++ A K +S
Sbjct: 272 DFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSA 331
Query: 529 EPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL--KPLE 586
+P + A +PA +A G IN+MTYDF + ++ H++ + P +
Sbjct: 332 DPAKIDAANIPALMDAGVTG------------INLMTYDFFTLGDGKLSHHTNIYRDPSD 379
Query: 587 GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPG 646
+ Y V + E K+ PK + IG Y R+ T + S G
Sbjct: 380 VYSKYSIDDAVTHLIDE--KKVDPK-AIFIGYAGYTRNAKNATITT----SIPSEEALKG 432
Query: 647 KYTAEAGFMSYYE---------VCDFLK------KDNTTLVWDNEQQVPFAYKDDQ--WV 689
YT + +E +C ++ ++ LV D + + Y + ++
Sbjct: 433 TYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFI 492
Query: 690 GFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
D RS++ K ++K+ G GG+ IWS D D+
Sbjct: 493 SLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIE--FLREHKFNGLDVDWEY--------PRGADDRASY 771
+S F E+ + FV E I+ F R F+ LD+DWEY P DD A++
Sbjct: 249 MSGLFSEIAKDEILRTNFV-EGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANF 307
Query: 772 VNLLKELRLAFEGEAK-----TSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVM 826
L++++ A K +S +P + A +PA +A G IN+M
Sbjct: 308 AILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTG------------INLM 355
Query: 827 TYDFHGQWERQVGHNSPL 844
TYDF + ++ H++ +
Sbjct: 356 TYDFFTLGDGKLSHHTNI 373
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 266 RNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
RNG V D K YL ++ D +S+R K ++KD G GG +W+ D D+
Sbjct: 467 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 92 KDDSKYRVVCYYTNWSQYRTKI 113
+DD + V+CY+T+WSQY +I
Sbjct: 95 EDDDDFNVLCYFTDWSQYDPRI 116
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 47/238 (19%)
Query: 490 FNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFE---AIA 546
+ G+ +D+E AD R + L++LR + +LT AVPA
Sbjct: 112 YGGVTIDFEQVSAAD-RDLFTGFLRQLRDRLQAGG-------YVLTIAVPAKTSDNIPWL 163
Query: 547 AGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVK 606
GYD I ++++ +M YD W P+ P+ + + T+E++ +
Sbjct: 164 RGYDYGGIGAVVNYMFIMAYD----WHHAGSEPGPVAPIT-----EIRRTIEFTIAQ--- 211
Query: 607 QGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKK 666
P K++IG+P YG +D P +PG A +S + +
Sbjct: 212 --VPSRKIIIGVPLYG----------YDWIIPY----QPGTV---ASAISNQNAIERAMR 252
Query: 667 DNTTLVWDNEQQVPFAYKDDQW-----VGFDDERSLKMKMDWLKEDGYGGIMIWSVDM 719
+ + E Q PF DQ V F+ RS+ KM ++E I W + +
Sbjct: 253 YQAPIQYSAEYQSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTL 310
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 752 FNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFE---AIA 808
+ G+ +D+E AD R + L++LR + +LT AVPA
Sbjct: 112 YGGVTIDFEQVSAAD-RDLFTGFLRQLRDRLQAGG-------YVLTIAVPAKTSDNIPWL 163
Query: 809 AGYDVPEISKYLDFINVMTYDFH 831
GYD I ++++ +M YD+H
Sbjct: 164 RGYDYGGIGAVVNYMFIMAYDWH 186
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 401 IDPKLCTHVIYAFGTLK-DHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWAF 459
I+ K TH+ +F +K D L +N +++ E++ + K+ ++KIL+++ +
Sbjct: 24 IEWKYLTHINASFARVKADGTLNINPVRKR-----IESVRETAHKH-NVKILISLAKNSP 77
Query: 460 GSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDW-EYPRGADDRASYVNLLKELRL 518
G F + + + + I F +E+K +G D+D+ EY + S + + L L
Sbjct: 78 GE--FTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNWDKNFPSLLVFARGLYL 135
Query: 519 AFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGH 578
A E L T AV + + E +Y D+IN+ +YD ++ V H
Sbjct: 136 A--------KEKNXLXTCAVNSRWLNYGT-----EWEQYFDYINLXSYDRGAFTDKPVQH 182
Query: 579 NSPLKPLEGATSYQKKLTVEYSAKEWVKQ-GAPKEKLMIGMPTYGRSF 625
S + K L K W +Q A K K++ G+P YG S+
Sbjct: 183 AS-------YDDFVKDL------KYWNEQCRASKSKIVGGLPFYGYSW 217
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 738 QFVYESIEFLREHKFNGLDVDW-EYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 796
+ + + I F +E+K +G D+D+ EY + S + + L LA E L
Sbjct: 92 ELIQQIIAFTKEYKLDGFDIDYEEYDNWDKNFPSLLVFARGLYLA--------KEKNXLX 143
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNS 842
T AV + + E +Y D+IN+ +YD ++ V H S
Sbjct: 144 TCAVNSRWLNYGT-----EWEQYFDYINLXSYDRGAFTDKPVQHAS 184
>pdb|3MRY|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
From Momordica Balsamina With 6-Aminopurine At 2.0a
Resolution
Length = 246
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 505 DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDFINV 563
D +SY +K+LR A K P LL + + + + YD I+ +D NV
Sbjct: 10 DPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNV 69
Query: 564 MTYDFHGQWERQVGHNSPLKPLEGA---TSYQKKLTVEYSA---KEWVKQGAPKEKLMIG 617
+ HN P L S ++K+T+ YS + + G P+EK+ IG
Sbjct: 70 YIMGYLA-LTTSYFHNEPAADLASQYVFRSARRKITLPYSGNYDRLQIAAGKPREKIPIG 128
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+P + + + +D A A + TAEA Y E
Sbjct: 129 LPALDTAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|1MOM|A Chain A, Crystal Structure Of Momordin, A Type I Ribosome
Inactivating Protein From The Seeds Of Momordica
Charantia
Length = 246
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDF 560
GAD R SY +K+LR A K P LL + + + + YD I+ LD
Sbjct: 8 GADPR-SYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNYDGKTITVALDV 66
Query: 561 INVMTYDFHGQWERQVGHNSPLKPLEGATSY-----QKKLTVEYSA---KEWVKQGAPKE 612
NV + N P L A+ Y ++K+T+ YS + + G P+E
Sbjct: 67 TNVYIMGYLADTTSYF-FNEPAAEL--ASQYVFRDARRKITLPYSGNYERLQIAAGKPRE 123
Query: 613 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
K+ IG+P + + + +D A A + TAEA Y E
Sbjct: 124 KIPIGLPALDSAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|1AHA|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHB|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHC|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
Length = 246
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 502 GADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDF 560
GAD R SY +K+LR A K P LL + + + + YD I+ +D
Sbjct: 8 GADPR-SYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNYDGKTITVAVDV 66
Query: 561 INVMTYDFHGQWERQVGHNSPLKPLEGATSY-----QKKLTVEYSA---KEWVKQGAPKE 612
NV + N P L A+ Y ++K+T+ YS + + G P+E
Sbjct: 67 TNVYIMGYLADTTSYF-FNEPAAEL--ASQYVFRDARRKITLPYSGNYERLQIAAGKPRE 123
Query: 613 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
K+ IG+P + + + +D A A + TAEA Y E
Sbjct: 124 KIPIGLPALDSAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 406 CTHVIYAFGTLKDH--KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWAFGSTP 463
TH+I A L + +TLN+D E K +K++ +GG A GS
Sbjct: 42 VTHIIIAAFHLNEDPGHITLNDDPPDHEMYNPLWAEVPVLKRSGVKVMGMLGGAAQGS-- 99
Query: 464 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
++ L G+ + ++ + +R H+ +GLD+D E
Sbjct: 100 YRCLDGDQEKFERYYQPLLAMVRRHQLDGLDLDVE 134
>pdb|1NAR|A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 436 EALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLRE-------H 488
E + L+ ++P++K++++IGG +TPF NV+ N ES++ + + +
Sbjct: 66 EKVKNLKRRHPEVKVVISIGGRGV-NTPFDPAEENVWVSN--AKESLKLIIQKYSDDSGN 122
Query: 489 KFNGLDVDWEYPRGADDRASYV-NLLKELR 517
+G+D+ +E+ R + A+ + L+ EL+
Sbjct: 123 LIDGIDIHYEHIRSDEPFATLMGQLITELK 152
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 477 FVYESIEFLREHKFNGLDVDWEYP--RGADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 534
FV E I + + F+GLD+D E AD++ + LK+++ + + K ++
Sbjct: 103 FVNEIIRLVDTYGFDGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDGK-----NFMI 157
Query: 535 TAAVPASFEAIAAGYD--VPEISKYLDFINVMTYDFHGQ--WERQVGHNSPLKPLEGATS 590
T A + + Y + + Y DFIN Y+ G W+ S L ++
Sbjct: 158 TMAPEFPYLTSSGKYAPYINNLDSYYDFINPQYYNQGGDGFWD------SDLNMWISQSN 211
Query: 591 YQKKLTVEYSAKEWVKQGA------PKEKLMIGMPT 620
+KK Y + + G P K +IG+P+
Sbjct: 212 DEKKEDFLYGLTQRLVTGTDGFIKIPASKFVIGLPS 247
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYP--RGADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 796
FV E I + + F+GLD+D E AD++ + LK+++ + + K ++
Sbjct: 103 FVNEIIRLVDTYGFDGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDGK-----NFMI 157
Query: 797 TAAVPASFEAIAAGYD--VPEISKYLDFINVMTYDFHGQ--WERQVG-----HNSPLKPL 847
T A + + Y + + Y DFIN Y+ G W+ + N K
Sbjct: 158 TMAPEFPYLTSSGKYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKED 217
Query: 848 EVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAAGY 888
+ +T + G + K ++ +P++ +A A GY
Sbjct: 218 FLYGLTQRLVTGTDGFIKIPASKFVI--GLPSNNDAAATGY 256
>pdb|3MY6|A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome
Inactivating Protein With 7-Methylguanine At 2.65 A
Resolution
Length = 246
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 505 DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDFINV 563
D +SY +K+LR A K P LL + + + + YD I+ +D NV
Sbjct: 10 DPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNV 69
Query: 564 MTYDFHGQWERQVGHNSPLKPLEGA---TSYQKKLTVEYSA---KEWVKQGAPKEKLMIG 617
+ N P L S ++K+T+ YS + + G P+EK+ IG
Sbjct: 70 YIMGYLA-LTTSYFFNEPAADLASQYVFRSARRKITLPYSGNYERLQIAAGKPREKIPIG 128
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+P + + + +D A A + TAEA Y E
Sbjct: 129 LPALDTAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|3N1D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Ribose At 1.7a Resolution
Length = 246
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 505 DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDFINV 563
D +SY +K+LR A K P LL + + + + YD I+ +D NV
Sbjct: 10 DPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNV 69
Query: 564 MTYDFHGQWERQVGHNSPLKPLEGA---TSYQKKLTVEYSA---KEWVKQGAPKEKLMIG 617
+ N P L S ++K+T+ YS + + G P+EK+ IG
Sbjct: 70 YIMGYLA-LTTSYFFNEPAADLASQYVFRSARRKITLPYSGNYERLQIAAGKPREKIPIG 128
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+P + + + +D A A + TAEA Y E
Sbjct: 129 LPALDTAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|3MRW|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
From Momordica Balsamina At 1.7 A Resolution
pdb|3N31|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Fucose At 2.1a Resolution
pdb|3N3X|A Chain A, Crystal Structure Of The Complex Formed Between Type I
Ribosome Inactivating Protein And Hexapeptide
Ser-Asp-Asp-Asp-Met-Gly At 1.7 A Resolution
pdb|3N5D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Glucose At 1.9a Resolution
pdb|3NFM|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Fructose At 2.5a Resolution
pdb|3N1N|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Guanine At 2.2a Resolution
pdb|3NJS|A Chain A, Crystal Structure Of The Complex Formed Between Typei
Ribosome Inactivating Protein And Lactose At 2.1a
Resolution
pdb|3N2D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Hexapeptide
Ser-Asp-Asp-Asp-Met-Gly At 2.2 A Resolution
pdb|3NX9|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
In Complex With Maltose At 1.7a Resolution
pdb|3Q4P|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With 7n-Methyl
-8-Hydroguanosine-5-P-Diphosphate At 1.8 A Resolution
pdb|3QJI|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein With 7-Methylguanosine Triphosphate At 1.75a
Resolution
pdb|3RL9|A Chain A, Crystal Structure Of The Complex Of Type I Rip With The
Hydrolyzed Product Of Datp, Adenine At 1.9 A Resolution
pdb|3S9Q|A Chain A, Crystal Structure Of Native Type 1 Ribosome Inactivating
Protein From Momordica Balsamina At 1.67 A Resolution
pdb|3SJ6|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein From Momordica Balsamina With
5-(Hydroxymethyl)oxalane-2,3,4- Triol At 1.6 A
Resolution
pdb|3U6T|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With Kanamycin At 1.85 A
pdb|3U8F|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With Mycolic Acid At 1.8
A Resolution
pdb|3U6Z|A Chain A, Crystal Structure Of The Complex Formed Between Type 1
Ribosome Inactivating Protein And Adenine At 1.7a
Resolution
pdb|3U70|A Chain A, Crystal Structure Of Type 1 Ribosome Inactivating Protein
Complexed With Adenine In Low Ionic Solvent
pdb|3V14|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein Complexed With Trehalose At 1.70 A
Resolution
pdb|3V2K|A Chain A, Crystal Structure Of Ribosome Inactivating Protein From
Momordica Balsamina Complexed With The Product Of Rna
Substrate Adenosine Triphosphate At 2.0 A Resolution
pdb|4DWM|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With N-Acetylglucosamine At 1.62 A
Resolution
pdb|4EMF|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With
7n-Methyl-8-Hydroguanosine-5-P-Diphosphate At 1.77 A
pdb|4EMR|A Chain A, Crystal Structure Determination Of Type1 Ribosome
Inactivating Protein Complexed With
7-Methylguanosine-Triphosphate At 1.75a
pdb|4F9N|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein From Momordica Balsamina With
N7-Methylated Guanine At 2.65 A Resolution
pdb|4FPZ|A Chain A, Crystal Structure Of Ribosome Inactivating Protein (Rip)
From Momordica Balsamina With Uracil At 1.7 Angstrom
Resolution
pdb|4G2X|A Chain A, Crystal Structure Of Cytidine Bound Ribosome Inactivating
Protein From Momordica Balsamina At 1.78 Angstrom
Resolution
pdb|4FXA|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With N-Acetyl Arginine
At 1.7 Angstrom Resolution
pdb|4FZ9|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With Disaccharide,
N-Acetylglucosamine (Beta-1, 4) Mannose At 1.7 A
Resolution
pdb|4GUW|A Chain A, Crystal Structure Of Type 1 Ribosome Inactivating Protein
From Momordica Balsamina With Lipopolysaccharide At 1.6
Angstrom Resolution
pdb|4H0Z|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With N-Acetyl Muramic
Acid At 2.0 Angstrom Resolution
pdb|4HOA|A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome
Inactivating Protein From Momordica Balsamina With
B-D-Galactopyranosyl-(1-4)-D- Glucose At 2.0 A
Resolution
pdb|4I47|A Chain A, Crystal Structure Of The Ribosome Inactivating Protein
Complexed With Methylated Guanine
Length = 246
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 505 DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDFINV 563
D +SY +K+LR A K P LL + + + + YD I+ +D NV
Sbjct: 10 DPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNV 69
Query: 564 MTYDFHGQWERQVGHNSPLKPLEGA---TSYQKKLTVEYSA---KEWVKQGAPKEKLMIG 617
+ N P L S ++K+T+ YS + + G P+EK+ IG
Sbjct: 70 YIMGYLA-LTTSYFFNEPAADLASQYVFRSARRKITLPYSGNYERLQIAAGKPREKIPIG 128
Query: 618 MPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+P + + + +D A A + TAEA Y E
Sbjct: 129 LPALDTAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|1MRG|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-Inactivating Proteins
Length = 263
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 502 GADDRASYVNLLKELRLAFEGEAKT----------SGEPRLLLTAAVPASFEAIAAGYDV 551
GAD R SY +K+LR A K SG R LL + I DV
Sbjct: 8 GADPR-SYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNRDGKTITVAVDV 66
Query: 552 PEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSY-----QKKLTVEYSA---KE 603
I + +Y F N P L A+ Y ++K+T+ YS +
Sbjct: 67 TNIYIMGYLADTTSYFF----------NEPAAEL--ASQYVFRDARRKITLPYSGDYERL 114
Query: 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+ G P+EK+ IG+P + + + +D A A + TAEA Y E
Sbjct: 115 QIAAGKPREKIPIGLPALDSAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 807
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 132 AFGWLKKGKLSSFESNDETKDGKVGLYERIEQL-KKANPKLKTLLAIGKLSLEELNGIPR 190
A G+ KKG S FE E D +G R EQ+ KK P L + I + + E G+ R
Sbjct: 436 AMGFAKKGDFSYFE---EIHDTCIGC-RRCEQVCKKEIPILNVIEKIAQKQIAEEKGLMR 491
Query: 191 ANNAKDVDWAKVAGNVEVETVTKPAPIKI 219
A + D A + + T P I I
Sbjct: 492 AGRGQVSDAEIRAEGLNLVMGTTPGIIAI 520
>pdb|1F8Q|A Chain A, Crystal Structure Of Alpha-momorcharin In
Acetonitrile-water Mixture
pdb|1MRI|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-Inactivating Proteins
pdb|1MRH|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-inactivating Proteins
Length = 263
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 502 GADDRASYVNLLKELRLAFEGEAKT----------SGEPRLLLTAAVPASFEAIAAGYDV 551
GAD R SY +K+LR A K SG R LL + I DV
Sbjct: 8 GADPR-SYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNRDGKTITVAVDV 66
Query: 552 PEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSY-----QKKLTVEYSA---KE 603
+ + +Y F N P L A+ Y ++K+T+ YS +
Sbjct: 67 TNVYIMGYLADTTSYFF----------NEPAAEL--ASQYVFRDARRKITLPYSGDYERL 114
Query: 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 659
+ G P+EK+ IG+P + + + +D A A + TAEA Y E
Sbjct: 115 QIAAGKPREKIPIGLPALDSAISTL--LHYDSTAAAGALLVLIQTTAEAARFKYIE 168
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 639 ASGGGEPGKYTAEAGFMS---YYEVCDFLKKDNTTLVWD-NEQQVPFAYKDDQWVGFDDE 694
A G PG + EAG S + + + + + ++ E A+++ +W GFDD
Sbjct: 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146
Query: 695 RSLKMKMDWLKEDGYGGIMIWSVDMDDLSTP 725
++K+K D Y GI +VD L P
Sbjct: 147 VTIKLK------DIYEGIEEENVDHVILDLP 171
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 639 ASGGGEPGKYTAEAGFMS---YYEVCDFLKKDNTTLVWD-NEQQVPFAYKDDQWVGFDDE 694
A G PG + EAG S + + + + + ++ E A+++ +W GFDD
Sbjct: 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146
Query: 695 RSLKMKMDWLKEDGYGGIMIWSVDMDDLSTP 725
++K+K D Y GI +VD L P
Sbjct: 147 VTIKLK------DIYEGIEEENVDHVILDLP 171
>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial Protein
With Chitin-Binding Function
Length = 74
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 947 CTHYYMCEGERKHHMPCPSNLVFNPKENVCDWP 979
C +Y C CP L +N VCDWP
Sbjct: 24 CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWP 56
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 135 WLKKG-KLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGKLSLEELNGIPRANN 193
W ++G ++ SN + DG L QL + + LE N P
Sbjct: 1932 WRRQGVQVLVSTSNASSLDGARSLITEATQLGPVGGVFNLAMVLRDAVLE--NQTP--EF 1987
Query: 194 AKDVDWAKVAGNVEVETVTKPAPIKIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIY 253
+DV K +G ++ VT+ A ++D F +S S R AG+ + +
Sbjct: 1988 FQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQ-----------ANYGF 2036
Query: 254 ALSTPRRVCEMLRN 267
A S R+CE R+
Sbjct: 2037 ANSAMERICEKRRH 2050
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,360,204
Number of Sequences: 62578
Number of extensions: 1537727
Number of successful extensions: 3956
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 366
length of query: 996
length of database: 14,973,337
effective HSP length: 108
effective length of query: 888
effective length of database: 8,214,913
effective search space: 7294842744
effective search space used: 7294842744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)