Query psy13135
Match_columns 996
No_of_seqs 735 out of 4059
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 1.2E-64 2.5E-69 580.2 34.5 344 379-732 1-349 (362)
2 cd02873 GH18_IDGF The IDGF's ( 100.0 1.6E-62 3.5E-67 567.0 33.2 337 378-725 1-397 (413)
3 cd02878 GH18_zymocin_alpha Zym 100.0 3E-58 6.5E-63 521.3 29.4 323 378-720 1-345 (345)
4 cd02879 GH18_plant_chitinase_c 100.0 7.3E-58 1.6E-62 508.2 29.4 289 377-724 3-297 (299)
5 KOG2806|consensus 100.0 6E-58 1.3E-62 530.2 29.2 344 377-725 52-402 (432)
6 COG3325 ChiA Chitinase [Carboh 100.0 1.5E-57 3.2E-62 497.7 28.2 344 372-720 33-423 (441)
7 smart00636 Glyco_18 Glycosyl h 100.0 4.3E-57 9.3E-62 512.5 31.0 329 378-720 1-334 (334)
8 cd06548 GH18_chitinase The GH1 100.0 2.7E-56 5.9E-61 501.9 29.6 293 379-720 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 7.5E-51 1.6E-55 462.9 24.9 334 377-720 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 3.8E-48 8.2E-53 435.3 22.1 291 378-722 4-312 (318)
11 cd02873 GH18_IDGF The IDGF's ( 100.0 3.7E-46 8.1E-51 430.9 20.1 243 98-343 1-413 (413)
12 cd02875 GH18_chitobiase Chitob 100.0 2.7E-44 5.8E-49 408.0 27.6 293 376-725 35-344 (358)
13 cd02874 GH18_CFLE_spore_hydrol 100.0 3.6E-44 7.7E-49 402.7 23.4 293 378-723 3-308 (313)
14 cd02872 GH18_chitolectin_chito 100.0 3.9E-44 8.5E-49 410.6 20.8 240 99-343 1-362 (362)
15 cd06549 GH18_trifunctional GH1 100.0 4.1E-40 8.9E-45 366.1 21.5 289 378-723 1-296 (298)
16 cd06545 GH18_3CO4_chitinase Th 100.0 1.4E-39 3.1E-44 354.1 24.1 241 379-722 1-244 (253)
17 KOG2806|consensus 100.0 1.3E-40 2.7E-45 385.9 16.1 247 93-343 48-420 (432)
18 cd06548 GH18_chitinase The GH1 100.0 4.4E-37 9.6E-42 346.1 18.1 215 99-320 1-322 (322)
19 COG3325 ChiA Chitinase [Carboh 100.0 9.3E-37 2E-41 334.5 15.5 241 92-344 33-437 (441)
20 cd02878 GH18_zymocin_alpha Zym 100.0 1.2E-36 2.7E-41 344.8 15.9 211 98-320 1-345 (345)
21 cd02879 GH18_plant_chitinase_c 100.0 4.5E-36 9.8E-41 333.7 17.8 209 97-324 3-297 (299)
22 cd00598 GH18_chitinase-like Th 100.0 1.1E-32 2.4E-37 291.7 21.7 175 379-567 1-177 (210)
23 smart00636 Glyco_18 Glycosyl h 100.0 6.5E-33 1.4E-37 314.7 19.2 214 98-320 1-334 (334)
24 cd06546 GH18_CTS3_chitinase GH 100.0 1.5E-30 3.3E-35 282.1 24.0 205 378-620 1-217 (256)
25 PF00704 Glyco_hydro_18: Glyco 100.0 7.3E-30 1.6E-34 290.6 17.2 222 97-320 1-343 (343)
26 cd06544 GH18_narbonin Narbonin 100.0 3.2E-29 6.9E-34 270.0 20.3 201 396-625 13-221 (253)
27 cd02871 GH18_chitinase_D-like 100.0 9.3E-28 2E-32 268.7 23.7 217 377-621 1-248 (312)
28 COG3858 Predicted glycosyl hyd 100.0 4.2E-28 9.1E-33 266.0 15.6 239 447-723 160-413 (423)
29 cd02875 GH18_chitobiase Chitob 99.9 5.8E-26 1.3E-30 258.2 10.8 140 729-895 90-235 (358)
30 cd02876 GH18_SI-CLP Stabilin-1 99.9 4.9E-26 1.1E-30 256.2 10.0 148 716-895 74-231 (318)
31 cd06549 GH18_trifunctional GH1 99.9 5.7E-24 1.2E-28 236.8 10.4 135 725-895 78-212 (298)
32 cd02874 GH18_CFLE_spore_hydrol 99.9 4.4E-24 9.6E-29 240.0 8.6 161 701-895 51-220 (313)
33 cd06545 GH18_3CO4_chitinase Th 99.9 1.1E-23 2.3E-28 229.6 11.1 162 702-901 53-216 (253)
34 KOG2091|consensus 99.9 7.1E-22 1.5E-26 206.7 14.8 289 376-719 78-383 (392)
35 cd06542 GH18_EndoS-like Endo-b 99.8 2.6E-20 5.6E-25 203.4 19.6 200 378-622 2-207 (255)
36 cd02877 GH18_hevamine_XipI_cla 99.8 2.6E-18 5.7E-23 188.0 19.8 185 402-621 21-229 (280)
37 COG3858 Predicted glycosyl hyd 99.8 3.1E-19 6.7E-24 196.5 12.3 138 726-895 182-324 (423)
38 cd06543 GH18_PF-ChiA-like PF-C 99.7 2.2E-17 4.8E-22 181.9 14.0 152 403-571 23-184 (294)
39 COG3469 Chitinase [Carbohydrat 99.7 5.1E-16 1.1E-20 158.6 16.3 231 367-619 16-265 (332)
40 cd06546 GH18_CTS3_chitinase GH 99.7 7.3E-17 1.6E-21 175.3 10.5 104 98-205 1-126 (256)
41 cd06544 GH18_narbonin Narbonin 99.6 7.4E-16 1.6E-20 166.5 11.6 124 734-895 96-219 (253)
42 cd00598 GH18_chitinase-like Th 99.6 6.2E-16 1.3E-20 163.7 9.8 123 699-829 53-177 (210)
43 cd02871 GH18_chitinase_D-like 99.5 1E-14 2.3E-19 163.6 10.1 126 695-834 60-199 (312)
44 cd06542 GH18_EndoS-like Endo-b 99.5 3.3E-14 7.2E-19 155.3 7.6 116 703-832 59-180 (255)
45 cd06543 GH18_PF-ChiA-like PF-C 99.3 6.7E-12 1.4E-16 138.7 7.4 122 696-833 55-184 (294)
46 cd02877 GH18_hevamine_XipI_cla 99.2 4E-11 8.7E-16 131.6 10.6 119 696-831 60-191 (280)
47 PF01607 CBM_14: Chitin bindin 98.9 9.3E-10 2E-14 89.6 2.5 47 939-985 7-53 (53)
48 KOG2091|consensus 98.8 1.5E-09 3.3E-14 115.0 3.3 145 714-886 146-299 (392)
49 KOG4701|consensus 98.8 1.4E-07 3.1E-12 102.1 15.7 104 447-567 103-217 (568)
50 smart00494 ChtBD2 Chitin-bindi 98.7 2.1E-08 4.6E-13 82.3 5.2 54 930-986 2-55 (56)
51 COG3469 Chitinase [Carbohydrat 98.0 1.9E-05 4.1E-10 82.1 8.2 169 691-886 80-264 (332)
52 cd06547 GH85_ENGase Endo-beta- 97.9 9.4E-05 2E-09 83.8 12.4 157 438-626 51-216 (339)
53 cd06547 GH85_ENGase Endo-beta- 97.6 7E-05 1.5E-09 84.8 5.6 84 702-785 53-138 (339)
54 PF03644 Glyco_hydro_85: Glyco 97.3 0.00085 1.8E-08 75.2 9.2 155 438-624 47-209 (311)
55 PF02638 DUF187: Glycosyl hydr 97.2 0.0039 8.5E-08 70.1 13.1 129 469-622 134-298 (311)
56 PF11340 DUF3142: Protein of u 96.4 0.035 7.5E-07 56.5 11.4 85 470-566 22-107 (181)
57 PF11340 DUF3142: Protein of u 95.6 0.019 4.2E-07 58.3 5.4 78 738-828 24-107 (181)
58 PF02638 DUF187: Glycosyl hydr 95.3 0.034 7.5E-07 62.6 7.1 95 731-830 134-263 (311)
59 PF13200 DUF4015: Putative gly 95.3 0.46 1E-05 53.3 15.8 87 476-569 124-229 (316)
60 PF03644 Glyco_hydro_85: Glyco 94.6 0.017 3.7E-07 64.9 2.1 83 702-784 49-133 (311)
61 PF13200 DUF4015: Putative gly 93.7 0.4 8.7E-06 53.8 10.5 129 688-833 81-231 (316)
62 KOG2331|consensus 91.9 0.75 1.6E-05 52.2 9.2 80 443-523 121-201 (526)
63 PF14883 GHL13: Hypothetical g 88.5 14 0.0003 40.8 15.1 191 405-621 30-263 (294)
64 cd02810 DHOD_DHPD_FMN Dihydroo 82.2 10 0.00022 42.2 11.1 106 433-565 84-197 (289)
65 PF03427 CBM_19: Carbohydrate 78.7 2.9 6.2E-05 34.9 3.7 22 948-969 35-56 (61)
66 TIGR01370 cysRS possible cyste 78.1 14 0.0003 41.8 10.2 86 436-524 85-204 (315)
67 KOG2331|consensus 68.7 5.5 0.00012 45.5 4.1 102 680-785 100-201 (526)
68 COG1306 Uncharacterized conser 68.4 13 0.00028 40.7 6.6 84 477-570 197-300 (400)
69 COG1649 Uncharacterized protei 66.1 8.5 0.00018 44.8 5.1 93 731-831 179-310 (418)
70 PF14871 GHL6: Hypothetical gl 60.9 32 0.00069 33.7 7.4 34 464-497 99-132 (132)
71 COG1649 Uncharacterized protei 59.7 18 0.00039 42.2 6.3 92 470-567 180-308 (418)
72 cd02930 DCR_FMN 2,4-dienoyl-Co 59.2 1.4E+02 0.003 34.3 13.5 65 431-497 75-158 (353)
73 PLN02495 oxidoreductase, actin 56.0 93 0.002 36.3 11.3 54 433-502 99-153 (385)
74 cd04733 OYE_like_2_FMN Old yel 55.9 41 0.00089 38.4 8.4 25 474-499 148-172 (338)
75 COG1306 Uncharacterized conser 55.0 14 0.00029 40.6 3.9 82 742-833 200-301 (400)
76 TIGR02402 trehalose_TreZ malto 53.5 68 0.0015 39.3 10.2 50 472-524 220-269 (542)
77 cd04740 DHOD_1B_like Dihydroor 51.9 75 0.0016 35.4 9.6 71 433-520 76-153 (296)
78 PRK14581 hmsF outer membrane N 51.5 1.9E+02 0.0041 36.3 13.5 195 404-621 346-611 (672)
79 KOG1552|consensus 50.7 28 0.0006 37.9 5.5 21 946-966 201-221 (258)
80 PRK07259 dihydroorotate dehydr 48.7 91 0.002 34.9 9.6 70 434-520 79-156 (301)
81 PRK08318 dihydropyrimidine deh 48.1 1.1E+02 0.0024 36.1 10.6 71 435-520 87-167 (420)
82 PF13199 Glyco_hydro_66: Glyco 47.9 41 0.00088 41.1 6.9 54 468-521 237-300 (559)
83 cd02801 DUS_like_FMN Dihydrour 45.6 68 0.0015 34.1 7.7 61 444-520 51-122 (231)
84 PF14885 GHL15: Hypothetical g 44.8 31 0.00067 30.7 3.9 44 455-498 32-76 (79)
85 PRK12568 glycogen branching en 44.5 55 0.0012 41.3 7.5 57 468-524 380-453 (730)
86 cd04735 OYE_like_4_FMN Old yel 42.0 80 0.0017 36.3 8.0 90 473-568 142-259 (353)
87 cd02940 DHPD_FMN Dihydropyrimi 40.6 1.7E+02 0.0037 32.8 10.1 83 434-541 86-178 (299)
88 PRK10605 N-ethylmaleimide redu 40.6 1.1E+02 0.0024 35.4 8.8 25 473-498 157-181 (362)
89 cd02803 OYE_like_FMN_family Ol 40.3 71 0.0015 36.1 7.2 23 475-498 141-163 (327)
90 cd02931 ER_like_FMN Enoate red 40.2 68 0.0015 37.4 7.1 24 473-497 148-171 (382)
91 COG1908 FrhD Coenzyme F420-red 40.0 26 0.00057 33.4 2.8 76 705-786 50-125 (132)
92 TIGR01037 pyrD_sub1_fam dihydr 39.5 2.4E+02 0.0052 31.4 11.2 100 435-564 79-189 (300)
93 PF02057 Glyco_hydro_59: Glyco 38.8 59 0.0013 40.1 6.3 84 434-524 114-201 (669)
94 PRK13523 NADPH dehydrogenase N 38.2 76 0.0016 36.3 6.9 66 431-498 79-164 (337)
95 PLN02411 12-oxophytodienoate r 37.9 71 0.0015 37.4 6.8 24 474-498 164-187 (391)
96 cd02932 OYE_YqiM_FMN Old yello 37.8 93 0.002 35.5 7.6 24 473-497 152-175 (336)
97 cd04734 OYE_like_3_FMN Old yel 36.6 1.3E+02 0.0027 34.6 8.4 24 473-497 139-162 (343)
98 PF13199 Glyco_hydro_66: Glyco 36.5 31 0.00068 42.0 3.6 53 731-783 238-300 (559)
99 PRK12313 glycogen branching en 36.1 78 0.0017 39.6 7.1 55 469-524 282-353 (633)
100 TIGR02102 pullulan_Gpos pullul 35.7 1.8E+02 0.0039 38.7 10.4 46 470-522 616-661 (1111)
101 PF02055 Glyco_hydro_30: O-Gly 35.2 2.4E+02 0.0051 34.2 10.7 132 434-567 155-312 (496)
102 PRK12568 glycogen branching en 35.1 39 0.00084 42.6 4.1 57 730-786 380-453 (730)
103 cd04747 OYE_like_5_FMN Old yel 34.1 2.4E+02 0.0053 32.6 10.2 62 474-540 143-220 (361)
104 PRK07565 dihydroorotate dehydr 32.6 2.1E+02 0.0045 32.7 9.3 71 433-520 88-164 (334)
105 PRK10550 tRNA-dihydrouridine s 32.5 1.5E+02 0.0034 33.4 8.1 94 447-564 62-168 (312)
106 cd02929 TMADH_HD_FMN Trimethyl 32.3 1.1E+02 0.0023 35.6 7.0 26 473-499 148-173 (370)
107 COG4724 Endo-beta-N-acetylgluc 31.1 87 0.0019 35.9 5.5 78 437-518 131-217 (553)
108 cd04741 DHOD_1A_like Dihydroor 30.1 3E+02 0.0065 30.8 9.9 83 433-541 75-167 (294)
109 PRK14582 pgaB outer membrane N 30.0 1.6E+02 0.0035 36.9 8.2 130 470-621 439-611 (671)
110 PF14488 DUF4434: Domain of un 29.7 6.1E+02 0.013 25.8 12.3 83 432-523 64-151 (166)
111 PRK02506 dihydroorotate dehydr 29.1 2.6E+02 0.0057 31.5 9.3 72 433-520 78-156 (310)
112 PRK14706 glycogen branching en 29.0 1.7E+02 0.0037 36.6 8.3 55 469-523 279-348 (639)
113 COG1902 NemA NADH:flavin oxido 28.4 1.1E+02 0.0024 35.4 6.1 90 474-568 148-262 (363)
114 PRK05402 glycogen branching en 28.3 1.4E+02 0.003 38.1 7.5 56 468-523 376-448 (726)
115 PF00724 Oxidored_FMN: NADH:fl 27.8 1.8E+02 0.0038 33.3 7.7 23 475-498 149-171 (341)
116 TIGR01515 branching_enzym alph 27.2 1.5E+02 0.0032 36.9 7.4 55 469-524 268-340 (613)
117 PLN02960 alpha-amylase 26.9 1.6E+02 0.0035 37.8 7.5 55 468-523 528-601 (897)
118 PLN02877 alpha-amylase/limit d 26.4 3E+02 0.0066 36.0 9.9 29 471-499 534-562 (970)
119 PF00834 Ribul_P_3_epim: Ribul 26.4 1.4E+02 0.0029 31.6 5.9 66 481-567 72-137 (201)
120 TIGR02104 pulA_typeI pullulana 26.2 1.8E+02 0.0039 36.2 7.9 48 469-523 292-339 (605)
121 PRK14706 glycogen branching en 25.8 69 0.0015 40.0 4.1 56 730-786 278-349 (639)
122 TIGR00742 yjbN tRNA dihydrouri 25.3 2.3E+02 0.005 32.2 7.9 60 445-520 52-122 (318)
123 COG5309 Exo-beta-1,3-glucanase 25.3 1.9E+02 0.0042 31.7 6.7 60 436-495 219-279 (305)
124 PF14587 Glyco_hydr_30_2: O-Gl 24.9 2.5E+02 0.0054 32.6 8.0 55 471-525 150-218 (384)
125 PRK12313 glycogen branching en 24.5 67 0.0015 40.1 3.8 56 730-786 281-353 (633)
126 KOG4701|consensus 24.1 73 0.0016 36.2 3.4 67 751-830 150-218 (568)
127 PRK11815 tRNA-dihydrouridine s 21.9 2.1E+02 0.0045 32.7 6.8 58 447-520 64-132 (333)
128 cd04739 DHOD_like Dihydroorota 21.6 4.6E+02 0.01 29.8 9.5 71 433-520 86-162 (325)
129 PF10566 Glyco_hydro_97: Glyco 21.5 1.3E+02 0.0028 33.4 4.8 103 695-829 73-175 (273)
130 PF00150 Cellulase: Cellulase 21.2 4.1E+02 0.0089 28.6 8.9 126 432-567 61-202 (281)
131 cd02803 OYE_like_FMN_family Ol 21.0 1.1E+02 0.0023 34.7 4.3 15 746-760 149-163 (327)
132 smart00733 Mterf Mitochondrial 21.0 74 0.0016 21.4 1.9 22 287-309 9-30 (31)
133 TIGR02103 pullul_strch alpha-1 20.5 75 0.0016 41.1 3.0 56 730-796 468-523 (898)
134 PRK14705 glycogen branching en 20.3 2.3E+02 0.005 38.1 7.4 54 469-523 877-948 (1224)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.2e-64 Score=580.16 Aligned_cols=344 Identities=56% Similarity=1.043 Sum_probs=314.8
Q ss_pred EEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCC-eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCC
Q psy13135 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDH-KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGW 457 (996)
Q Consensus 379 vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~-~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~ 457 (996)
|||||++|+.+|++.+.|.+++|+.++||||+|+|+.++.+ ++...+...+...+.++++.+||++||++|||||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG~ 80 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGGW 80 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcCC
Confidence 68999999999999899999999999999999999999864 45544443334677899999999999999999999999
Q ss_pred CCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC----ccCHHHHHHHHHHHHHHHHhhhcccCCCceE
Q psy13135 458 AFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----ADDRASYVNLLKELRLAFEGEAKTSGEPRLL 533 (996)
Q Consensus 458 ~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~----~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~ 533 (996)
+.++..|+.++++++.|++||+++++++++|+|||||||||+|.. ++|+++|+.||++||++|++.+ ++++
T Consensus 81 ~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~~~ 155 (362)
T cd02872 81 NFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PRLL 155 (362)
T ss_pred CCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cCeE
Confidence 977778999999999999999999999999999999999999974 4789999999999999998763 2589
Q ss_pred EEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCC
Q psy13135 534 LTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEK 613 (996)
Q Consensus 534 Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~K 613 (996)
||+++|+....+...||+++|.+++|+|+||+||+|++|...+||++||++...........+++.+|++|++.|+|++|
T Consensus 156 ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~K 235 (362)
T cd02872 156 LTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEK 235 (362)
T ss_pred EEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHH
Confidence 99999998766666899999999999999999999999999999999999866544444567899999999999999999
Q ss_pred eeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceEeeCCeEEeecc
Q psy13135 614 LMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVGFDD 693 (996)
Q Consensus 614 LvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~~~~wv~ydd 693 (996)
|+||||+|||.|++.++.+..+|+|+.|++.+|.++.+.|.++|.|||+.+ ..+++..||+.+++||+|++++||+|||
T Consensus 236 lvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~~~v~ydd 314 (362)
T cd02872 236 LVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGNQWVGYDD 314 (362)
T ss_pred eEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECCEEEEeCC
Confidence 999999999999999888888999999999999999999999999999988 7789999999999999999999999999
Q ss_pred cchhhhhchhhhhcCCcceeeeeccCCCCCCcccccccc
Q psy13135 694 ERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGN 732 (996)
Q Consensus 694 ~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~ 732 (996)
++|++.|+++++++++||+++|++++||+.|. |+.
T Consensus 315 ~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~----cg~ 349 (362)
T cd02872 315 EESIALKVQYLKSKGLGGAMVWSIDLDDFRGT----CGQ 349 (362)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeecCcCCCc----cCC
Confidence 99999999999999999999999999999998 986
No 2
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.6e-62 Score=567.04 Aligned_cols=337 Identities=28% Similarity=0.560 Sum_probs=287.8
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCC--CcEEEEEEEEeeCCeeEe--CCCcchhhhhHHHHHHHHHHhCCCceEEEE
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKL--CTHVIYAFGTLKDHKLTL--NEDKEKDEAGKFEALMQLREKNPDIKILLA 453 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~--cTHIiyafa~v~~~~~~~--~~~~~~~~~~~~~~~~~lk~~np~lKvllS 453 (996)
+|||||++|+.+|.+.++|.|++||+.+ ||||+|+|+.+++.+..+ .+...+.+.+.++++.+||++||++|||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 5899999999999999999999999876 999999999999764333 233223345779999999999999999999
Q ss_pred EcCCCCC-----CcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC--------------------------
Q psy13135 454 IGGWAFG-----STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-------------------------- 502 (996)
Q Consensus 454 IGG~~~~-----s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-------------------------- 502 (996)
||||+.+ +..|+.++++++.|++||+++++||++|+|||||||||||..
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 9999853 457999999999999999999999999999999999999962
Q ss_pred ----ccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCC--Cc
Q psy13135 503 ----ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER--QV 576 (996)
Q Consensus 503 ----~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~--~~ 576 (996)
++|+++|+.||++||++|++. +++|++++++.... ...||+++|+++|||||||+|||||+|.. .+
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~~-------~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~ 232 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRPD-------GLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEEA 232 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhccc-------CcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCcc
Confidence 358999999999999999764 36889988654222 23589999999999999999999999864 58
Q ss_pred CCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeccccceeeeEecCCCC-CC--CCCCCCCCCCCCcccccCc
Q psy13135 577 GHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTK-FD--IGAPASGGGEPGKYTAEAG 653 (996)
Q Consensus 577 g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~-~~--~g~p~~g~g~~g~~t~~~G 653 (996)
+|++||++.... ...++++.+|++|++.|+|++|||||||||||.|++.++.. .. ..+++.|++.+|+++.++|
T Consensus 233 ~~~apL~~~~~~---~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g 309 (413)
T cd02873 233 DYTAPIYELYER---NPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPG 309 (413)
T ss_pred CcCCccCCCccc---cccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCc
Confidence 999999975421 34579999999999999999999999999999999987643 22 2356788888999999999
Q ss_pred ceeehhhhccccCC--------CceEEEcCCCC-cceEeeC-------CeEEeecccchhhhhchhhhhcCCcceeeeec
Q psy13135 654 FMSYYEVCDFLKKD--------NTTLVWDNEQQ-VPFAYKD-------DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSV 717 (996)
Q Consensus 654 ~lsy~ei~~~l~~~--------~~~~~wD~~~~-~py~~~~-------~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l 717 (996)
.++|.|||+.+... .++..||+..+ .+|+|.. ++||+|||++|++.|++|+++++|||+|+|++
T Consensus 310 ~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l 389 (413)
T cd02873 310 LLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDL 389 (413)
T ss_pred cccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEee
Confidence 99999999977642 24567898776 4899842 47999999999999999999999999999999
Q ss_pred cCCCCCCc
Q psy13135 718 DMDDLSTP 725 (996)
Q Consensus 718 ~~Dd~sg~ 725 (996)
++||++|.
T Consensus 390 ~~DD~~g~ 397 (413)
T cd02873 390 SLDDFRGQ 397 (413)
T ss_pred ecCcCCCC
Confidence 99999998
No 3
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=3e-58 Score=521.29 Aligned_cols=323 Identities=28% Similarity=0.580 Sum_probs=274.1
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCC-eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcC
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDH-KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGG 456 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~-~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG 456 (996)
|+||||++|+.+|++ ..|.|++||+++||||+|+|+.++++ .+.... ..+.+.++.++| ++||||||||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~~-----~~~~~~~~~~~k----~lkvllsiGG 70 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDVSS-----VQEQFSDFKKLK----GVKKILSFGG 70 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEeecc-----cHHHHHHHHhhc----CcEEEEEEeC
Confidence 589999999999986 48999999999999999999999864 444321 234456666554 3999999999
Q ss_pred CCCCCc-----chhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC----------ccCHHHHHHHHHHHHHHHH
Q psy13135 457 WAFGST-----PFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG----------ADDRASYVNLLKELRLAFE 521 (996)
Q Consensus 457 ~~~~s~-----~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~----------~~d~~~f~~llkeLr~~l~ 521 (996)
|+.++. .|+.++ ++++|++||+++++++++|+|||||||||||.. ++|+++|+.||++||++|+
T Consensus 71 ~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~ 149 (345)
T cd02878 71 WDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLP 149 (345)
T ss_pred CCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 986443 488888 999999999999999999999999999999963 3589999999999999996
Q ss_pred hhhcccCCCceEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccc-cccccHHHH
Q psy13135 522 GEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSY-QKKLTVEYS 600 (996)
Q Consensus 522 ~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~-~~~~~v~~~ 600 (996)
+ +++||+++|+..... ..||+++|.+++||||||+|||||+|+..++|++|..+....... ....+++.+
T Consensus 150 ~--------~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 220 (345)
T cd02878 150 S--------GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDA 220 (345)
T ss_pred c--------CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHH
Confidence 4 268999999875543 479999999999999999999999999888888875543221111 122358889
Q ss_pred HHHHHHcCCCCCCeeeccccceeeeEecCCCCCCCCCCCCCCC---CCCcccccCcceeehhhhccc-cCCCceEEEcCC
Q psy13135 601 AKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGG---EPGKYTAEAGFMSYYEVCDFL-KKDNTTLVWDNE 676 (996)
Q Consensus 601 v~~~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g---~~g~~t~~~G~lsy~ei~~~l-~~~~~~~~wD~~ 676 (996)
|+.|++.|+|++||+||||+|||.|++.++.++.+++|+.|++ .+|+++...|++.|.|||..+ ...+++..||+.
T Consensus 221 v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~ 300 (345)
T cd02878 221 LSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTD 300 (345)
T ss_pred HHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecC
Confidence 9999999999999999999999999999999999999998875 467778888888899999854 456789999999
Q ss_pred CCcceE-eeCCeEEeecccchhhhhchhhhhcCCcceeeeeccCC
Q psy13135 677 QQVPFA-YKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720 (996)
Q Consensus 677 ~~~py~-~~~~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~D 720 (996)
+++||. |.+++||+|||++|++.|++|+++++|||+|+|++++|
T Consensus 301 ~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 301 SDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 999986 66789999999999999999999999999999999976
No 4
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=7.3e-58 Score=508.17 Aligned_cols=289 Identities=36% Similarity=0.681 Sum_probs=252.9
Q ss_pred eeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHH-HHHHHhCCCceEEEEEc
Q psy13135 377 IDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL-MQLREKNPDIKILLAIG 455 (996)
Q Consensus 377 ~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~-~~lk~~np~lKvllSIG 455 (996)
.+++|||++|+ +.|.|++||+++||||+|+|+.+++++..+.... .....+..+ ..+|+++|++|+|||||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~~~lkvlisiG 74 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISP--SDESEFSTFTETVKRKNPSVKTLLSIG 74 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeecc--ccHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 57899999998 3699999999999999999999987543222111 122333344 47899999999999999
Q ss_pred CCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEE
Q psy13135 456 GWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLT 535 (996)
Q Consensus 456 G~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Ls 535 (996)
||+.++..|+.+++++++|++||+++++|+++|+|||||||||||..++|+++|+.||++||++|+.+++..++++++||
T Consensus 75 G~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls 154 (299)
T cd02879 75 GGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLT 154 (299)
T ss_pred CCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence 99977789999999999999999999999999999999999999988889999999999999999987766666779999
Q ss_pred EeecCchhh----hhcCCChhhhhccccEEEEeeccCCCCCCC-CcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCC
Q psy13135 536 AAVPASFEA----IAAGYDVPEISKYLDFINVMTYDFHGQWER-QVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAP 610 (996)
Q Consensus 536 vavp~~~~~----~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~-~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp 610 (996)
+++|+.... ...+||+++|.++|||||||+||+||+|+. .++|++||++.. ..++++.+|++|++.|+|
T Consensus 155 ~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~------~~~~~~~~v~~~~~~g~p 228 (299)
T cd02879 155 AAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN------SNVSTDYGIKSWIKAGVP 228 (299)
T ss_pred eecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCC------CCCCHHHHHHHHHHcCCC
Confidence 999986554 345799999999999999999999999986 578889998643 246899999999999999
Q ss_pred CCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceEeeCCeEEe
Q psy13135 611 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVG 690 (996)
Q Consensus 611 ~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~~~~wv~ 690 (996)
++|||||||+|||.|++ ||+.++++|.|.+++||+
T Consensus 229 ~~KlvlGvp~YGr~~~~---------------------------------------------~D~~~~~~y~~~~~~wi~ 263 (299)
T cd02879 229 AKKLVLGLPLYGRAWTL---------------------------------------------YDTTTVSSYVYAGTTWIG 263 (299)
T ss_pred HHHEEEEeccccccccc---------------------------------------------cCCCcceEEEEECCEEEE
Confidence 99999999999999963 788888899999999999
Q ss_pred ecccchhhhhchhhhhcCCcceeeeeccCCCCCC
Q psy13135 691 FDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLST 724 (996)
Q Consensus 691 ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg 724 (996)
|||++|++.|++|+++++|||+|+|++++||..+
T Consensus 264 ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 264 YDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred eCCHHHHHHHHHHHHhCCCCeEEEEEeecCCccc
Confidence 9999999999999999999999999999998754
No 5
>KOG2806|consensus
Probab=100.00 E-value=6e-58 Score=530.25 Aligned_cols=344 Identities=32% Similarity=0.596 Sum_probs=299.2
Q ss_pred eeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcC
Q psy13135 377 IDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGG 456 (996)
Q Consensus 377 ~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG 456 (996)
..++||+..|..++.+.+.+.+.++++.+|||+||||+.++.++........ ....+.+....+|++||++|+||||||
T Consensus 52 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~-~~~~f~~~~~~~k~~n~~vK~llSIGG 130 (432)
T KOG2806|consen 52 QNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR-TMNRFSSYNQTAKSSNPTVKVMISIGG 130 (432)
T ss_pred ccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch-hhhhhHHHHHHHHhhCCCceEEEEecC
Confidence 4566777777766655457889999999999999999999955444333221 244677888899999999999999999
Q ss_pred CCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCC-CccCHHHHHHHHHHHHHHHHhhhcccCCCceEEE
Q psy13135 457 WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR-GADDRASYVNLLKELRLAFEGEAKTSGEPRLLLT 535 (996)
Q Consensus 457 ~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~-~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Ls 535 (996)
|..++..|+.+++|++.|+.||+++++||++|+|||||||||||. ...|+.+|..|++|||++|.++.+...++.++|+
T Consensus 131 ~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~ 210 (432)
T KOG2806|consen 131 SHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLE 210 (432)
T ss_pred CCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceee
Confidence 954578899999999999999999999999999999999999996 5789999999999999999999887777765666
Q ss_pred EeecCchh-hhhcCCChhhhhccccEEEEeeccCCCCCCC--CcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCC
Q psy13135 536 AAVPASFE-AIAAGYDVPEISKYLDFINVMTYDFHGQWER--QVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKE 612 (996)
Q Consensus 536 vavp~~~~-~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~--~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~ 612 (996)
.++.+... ....+||+++|.+++||||||+|||||+|+. .+|++|||+.... .....+|++.+|++|++.|.|++
T Consensus 211 ~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~--~~~~~~Nvd~~~ky~~~~~~~~~ 288 (432)
T KOG2806|consen 211 AVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPS--MTNPKMNVDSLLKYWTEKGLPPS 288 (432)
T ss_pred eccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCc--ccccCcchhhhHHHHhhcCCCch
Confidence 66655533 6678999999999999999999999999998 8999999997543 23356799999999999999999
Q ss_pred CeeeccccceeeeEecCCCCCCCCCCCCCCCCCCc-ccccCcceeehhhhccccCCCceEEEcCCCCcceEee--CCeEE
Q psy13135 613 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGK-YTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYK--DDQWV 689 (996)
Q Consensus 613 KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~-~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~--~~~wv 689 (996)
||+||||+|||.|++++.... .+.+..+.+.++. .+...|+++|.|||+.+.+.+ ...||+.+++||+|+ +++||
T Consensus 289 Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~~Y~~~~~~~~wv 366 (432)
T KOG2806|consen 289 KLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQTPYLYNIPYDQWV 366 (432)
T ss_pred heEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCceeeeEEecCCCeEE
Confidence 999999999999999987766 7888888888876 677889999999999655434 789999999999999 99999
Q ss_pred eecccchhhhhchhhhhcCCcceeeeeccCCCCCCc
Q psy13135 690 GFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTP 725 (996)
Q Consensus 690 ~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~ 725 (996)
+|||++|++.|++|+++++|||+++|++++||+.+.
T Consensus 367 tyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~ 402 (432)
T KOG2806|consen 367 TYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGS 402 (432)
T ss_pred ecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc
Confidence 999999999999999999999999999999999987
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-57 Score=497.69 Aligned_cols=344 Identities=31% Similarity=0.594 Sum_probs=275.2
Q ss_pred CCCcceeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeE------e--------------CCCcchhh
Q psy13135 372 PAPIKIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLT------L--------------NEDKEKDE 431 (996)
Q Consensus 372 p~p~~~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~------~--------------~~~~~~~~ 431 (996)
..+..+|||+||++|+++.+ ..|.|.+||++++|||+|||+.+..++-. . .+......
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~ 110 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPL 110 (441)
T ss_pred CCCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccc
Confidence 34557899999999999976 58999999999999999999999854311 0 00011114
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC---------
Q psy13135 432 AGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--------- 502 (996)
Q Consensus 432 ~~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~--------- 502 (996)
.+.+..+..||+++|++|+++|||||+. |..|+.++.+.+.|++|++++++||++|+|||||||||||.+
T Consensus 111 ~G~~~~L~~lk~~~~d~k~l~SIGGWs~-S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~ 189 (441)
T COG3325 111 KGHFGALFDLKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGR 189 (441)
T ss_pred cchHHHHHHHhhhCCCceEEEeeccccc-CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCC
Confidence 5789999999999999999999999995 789999999999999999999999999999999999999974
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCC
Q psy13135 503 ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 582 (996)
Q Consensus 503 ~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL 582 (996)
+.+.++|+.||++||++|..++.++|| +|.||+|.|+....+. +.+..++.++|||||||||||||.|...+|||+||
T Consensus 190 ~~d~~ny~~Ll~eLR~~LD~a~~edgr-~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~L 267 (441)
T COG3325 190 PKDKANYVLLLQELRKKLDKAGVEDGR-HYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAAL 267 (441)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCc-eEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccccccccccccc
Confidence 468999999999999999999988886 6999999999988776 88999999999999999999999999999999999
Q ss_pred CCCCCCcccc-------ccccHHHHHHHHHHcCCCCCCeeeccccceeeeEecCCCCCC-CCCCCCCCC----CCCcccc
Q psy13135 583 KPLEGATSYQ-------KKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFD-IGAPASGGG----EPGKYTA 650 (996)
Q Consensus 583 ~~~~~~~~~~-------~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~~~-~g~p~~g~g----~~g~~t~ 650 (996)
+..+...... ........++.....++||+|||||+|+|||+|..++..... .+.+..+.. ..|.+-.
T Consensus 268 y~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a 347 (441)
T COG3325 268 YGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEA 347 (441)
T ss_pred ccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccc
Confidence 9533322211 112222355666678899999999999999999987765421 111111111 1122211
Q ss_pred cCcceee---hhhh-ccccCCCceEEEcCCCCcceEeeC--CeEEeecccchhhhhchhhhhcCCcceeeeeccCC
Q psy13135 651 EAGFMSY---YEVC-DFLKKDNTTLVWDNEQQVPFAYKD--DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720 (996)
Q Consensus 651 ~~G~lsy---~ei~-~~l~~~~~~~~wD~~~~~py~~~~--~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~D 720 (996)
..+.-.| +.+- .....+++.+.||+.+++||+|+. +.||+|||++|++.|.+|++.++|||+|+|.+.+|
T Consensus 348 ~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD 423 (441)
T COG3325 348 GNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423 (441)
T ss_pred cccCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC
Confidence 1121222 2332 234456788999999999999974 68999999999999999999999999999999988
No 7
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=4.3e-57 Score=512.46 Aligned_cols=329 Identities=42% Similarity=0.833 Sum_probs=291.8
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCC-eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcC
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDH-KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGG 456 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~-~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG 456 (996)
+++|||++|+.++ ..|.+++++.++||||+|+|+.++++ ++.+.+.. .+.+.+..+..+|+++|++|||++|||
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~l~~~~~~~kvl~svgg 75 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDGTVTIGDEW--ADIGNFGQLKALKKKNPGLKVLLSIGG 75 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCCCEeeCCcc--hhhhhHHHHHHHHHhCCCCEEEEEEeC
Confidence 5899999999765 46999999999999999999999864 44444322 122456779999999999999999999
Q ss_pred CCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc-cCHHHHHHHHHHHHHHHHhhhcccCCCceEEE
Q psy13135 457 WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA-DDRASYVNLLKELRLAFEGEAKTSGEPRLLLT 535 (996)
Q Consensus 457 ~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~-~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Ls 535 (996)
|.. +..|+.++++++.|++||+++++++++|+|||||||||+|... .++.+|+.||++||++|++... . .++++||
T Consensus 76 ~~~-s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~ls 152 (334)
T smart00636 76 WTE-SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYLLT 152 (334)
T ss_pred CCC-CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceEEE
Confidence 985 6789999999999999999999999999999999999999753 6889999999999999987522 1 3469999
Q ss_pred EeecCchhhhhcCCC-hhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCe
Q psy13135 536 AAVPASFEAIAAGYD-VPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614 (996)
Q Consensus 536 vavp~~~~~~~~~yd-~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~KL 614 (996)
+++|+........|+ +.+|.+++|+|+||+||+|++|+..+|++|||++..... ...+++.+|+.|++.|+|++||
T Consensus 153 i~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~---~~~~v~~~v~~~~~~gvp~~Kl 229 (334)
T smart00636 153 IAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP---EKYNVDYAVKYYLCKGVPPSKL 229 (334)
T ss_pred EEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC---CCccHHHHHHHHHHcCCCHHHe
Confidence 999997666555689 699999999999999999999999999999999765432 3568999999999999999999
Q ss_pred eeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceEee-C-CeEEeec
Q psy13135 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYK-D-DQWVGFD 692 (996)
Q Consensus 615 vLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~-~-~~wv~yd 692 (996)
+||||+||+.|++.++.+..+++|..|++.+|+++.+.|.++|.|||+.+ ++...||+.+++||.|+ + .+||+||
T Consensus 230 vlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~~~~~~v~yd 306 (334)
T smart00636 230 VLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNPGTGQWVSYD 306 (334)
T ss_pred EEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEECCCCEEEEcC
Confidence 99999999999999988888999999999999999999999999999876 78999999999999997 4 4899999
Q ss_pred ccchhhhhchhhhhcCCcceeeeeccCC
Q psy13135 693 DERSLKMKMDWLKEDGYGGIMIWSVDMD 720 (996)
Q Consensus 693 d~~Sl~~K~~~~k~~~lgGi~vW~l~~D 720 (996)
|++|++.|+++++++++||+++|++++|
T Consensus 307 d~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 307 DPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 9999999999999999999999999986
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.7e-56 Score=501.91 Aligned_cols=293 Identities=36% Similarity=0.732 Sum_probs=257.3
Q ss_pred EEEEecccCCcCCCCCCCCCC-CCCCCCCcEEEEEEEEeeCCeeEeCCC-----------------cchhhhhHHHHHHH
Q psy13135 379 IFCYMTSWSQARPGAGKFGPE-NIDPKLCTHVIYAFGTLKDHKLTLNED-----------------KEKDEAGKFEALMQ 440 (996)
Q Consensus 379 vvcYy~~W~~~r~~~~~~~~~-~i~~~~cTHIiyafa~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 440 (996)
|+|||++|+.+|++ +.+. +||+++||||+|||+.+++++.....+ ......+.++++..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 68999999999964 4555 799999999999999999655443321 11224578899999
Q ss_pred HHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC---------ccCHHHHHH
Q psy13135 441 LREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG---------ADDRASYVN 511 (996)
Q Consensus 441 lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~---------~~d~~~f~~ 511 (996)
||+++|++|||+|||||+. +..|+.++++++.|++||+++++|+++|+|||||||||||.. ++++.+|+.
T Consensus 78 lk~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ 156 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTL 156 (322)
T ss_pred HHHhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHH
Confidence 9999999999999999984 678999999999999999999999999999999999999975 578999999
Q ss_pred HHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccc
Q psy13135 512 LLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSY 591 (996)
Q Consensus 512 llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~ 591 (996)
||++||++|++.+...++ +++||+++|+...... .+++++|.++||+||||+|||||+|+..+||+|||++.....
T Consensus 157 ll~~Lr~~l~~~~~~~~~-~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~-- 232 (322)
T cd06548 157 LLKELREALDALGAETGR-KYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADP-- 232 (322)
T ss_pred HHHHHHHHHHHhhhccCC-ceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCC--
Confidence 999999999987654443 5899999999876543 688999999999999999999999999999999998755322
Q ss_pred cccccHHHHHHHHHHcCCCCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceE
Q psy13135 592 QKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTL 671 (996)
Q Consensus 592 ~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~ 671 (996)
....+++.+|+.|++.|+|++|||||||+|||.|++ ++.
T Consensus 233 ~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------------~~~ 271 (322)
T cd06548 233 PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------------YTR 271 (322)
T ss_pred CCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------------cEE
Confidence 245789999999999999999999999999999953 467
Q ss_pred EEcCCCCcceEeeC--CeEEeecccchhhhhchhhhhcCCcceeeeeccCC
Q psy13135 672 VWDNEQQVPFAYKD--DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720 (996)
Q Consensus 672 ~wD~~~~~py~~~~--~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~D 720 (996)
.||+.+++||+|++ ++||+|||++|++.|++|+++++|||+|+|++++|
T Consensus 272 ~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 272 YWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred EEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 89999999999987 89999999999999999999999999999999986
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=7.5e-51 Score=462.92 Aligned_cols=334 Identities=39% Similarity=0.800 Sum_probs=281.9
Q ss_pred eeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeC----CCcchhhhhHHHHHHHHHHhCCCceEEE
Q psy13135 377 IDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLN----EDKEKDEAGKFEALMQLREKNPDIKILL 452 (996)
Q Consensus 377 ~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~----~~~~~~~~~~~~~~~~lk~~np~lKvll 452 (996)
++|+|||++|+.++++ .|.+++++.++||||+|+|+.++.++.... ..........++.+..+|+++|++||||
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 4799999999988765 688999999999999999999996543321 1122235677888999999999999999
Q ss_pred EEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc---cCHHHHHHHHHHHHHHHHhhhcccCC
Q psy13135 453 AIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA---DDRASYVNLLKELRLAFEGEAKTSGE 529 (996)
Q Consensus 453 SIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~---~d~~~f~~llkeLr~~l~~~~~~~~~ 529 (996)
|||||..++..|+.++++++.|++|+++++++|++|+|||||||||+|... +++.+|..||++||++|++.+...
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~-- 156 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG-- 156 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--
Confidence 999998543489999999999999999999999999999999999999753 589999999999999999865432
Q ss_pred CceEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy13135 530 PRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGA 609 (996)
Q Consensus 530 ~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gv 609 (996)
++++||+++|+...... .+++++|.+++|||+||+||+|++|+..+++++||+..... ....+++.+++.|+..|+
T Consensus 157 ~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 157 KGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWD---SNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp STSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTS---GTSSSHHHHHHHHHHTTS
T ss_pred ceeEEeecccccccccc-ccccccccccccccccccccCCCCcccccccccccccCCcc---CCCceeeeehhhhccccC
Confidence 24899999999876444 45999999999999999999999999999999999865532 245789999999999999
Q ss_pred CCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceEeeC--Ce
Q psy13135 610 PKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKD--DQ 687 (996)
Q Consensus 610 p~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~~--~~ 687 (996)
|++||+||||+||+.|++.+........+.. ..++..+...|.+.|.++|..+...++...||+.++++|.+.. ++
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~ 310 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKH 310 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCccc--ccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCe
Confidence 9999999999999999998876554444332 2345567788999999999998778899999999999999987 79
Q ss_pred EEeecccchhhhhchhhhhcCCcceeeeeccCC
Q psy13135 688 WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720 (996)
Q Consensus 688 wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~D 720 (996)
||+|||++|++.|+++++++||||+++|++++|
T Consensus 311 ~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 311 WISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999999986
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=3.8e-48 Score=435.33 Aligned_cols=291 Identities=22% Similarity=0.423 Sum_probs=238.1
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCe--eEeCCCcchhhhhHHHHHHHHHHhCCCceEE--EE
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHK--LTLNEDKEKDEAGKFEALMQLREKNPDIKIL--LA 453 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~--~~~~~~~~~~~~~~~~~~~~lk~~np~lKvl--lS 453 (996)
+++|||++|+.+ .|.+.+++.++||||+|+|+.+++.+ +.+.+. .+.+. ..+..+|+++|++||| ++
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~-~~~~~---~~~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGT-HDIDK---GWIEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeecC-cchhh---HHHHHHHhhCCCcEEEeEEE
Confidence 579999999764 48889999999999999999998533 323221 11111 2466889999999999 77
Q ss_pred EcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEe-eeCCCC---ccCHHHHHHHHHHHHHHHHhhhcccCC
Q psy13135 454 IGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD-WEYPRG---ADDRASYVNLLKELRLAFEGEAKTSGE 529 (996)
Q Consensus 454 IGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDID-wE~P~~---~~d~~~f~~llkeLr~~l~~~~~~~~~ 529 (996)
+|||+. ..|+.++++++.|++||+++++|+++|+||||||| ||||.. ++++.+|+.||++||++|++.+
T Consensus 75 ~gg~~~--~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~----- 147 (318)
T cd02876 75 FEGWSY--QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN----- 147 (318)
T ss_pred ECCCCH--HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC-----
Confidence 899973 46999999999999999999999999999999999 999964 3589999999999999998653
Q ss_pred CceEEEEeecCchh-----hhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHH
Q psy13135 530 PRLLLTAAVPASFE-----AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEW 604 (996)
Q Consensus 530 ~~~~Lsvavp~~~~-----~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~ 604 (996)
+.|++++|+... ....+||+++|++++|||+|||||+||+ ..+|++|||+ +++.++++|
T Consensus 148 --~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~------------~v~~~v~~~ 211 (318)
T cd02876 148 --LKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS------------WVRSCLELL 211 (318)
T ss_pred --CEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH------------HHHHHHHHH
Confidence 577777776432 1234689999999999999999999997 7789999986 588899999
Q ss_pred HHcC-CCCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcc-eE
Q psy13135 605 VKQG-APKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVP-FA 682 (996)
Q Consensus 605 l~~G-vp~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~p-y~ 682 (996)
++.| +|++|||||||+|||.|++.+ .+. .+++.+.+++++..+++..||++++.+ |.
T Consensus 212 ~~~~~vp~~KlvlGip~YG~~w~~~~-----~~~----------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 270 (318)
T cd02876 212 LPESGKKRAKILLGLNFYGNDYTLPG-----GGG----------------AITGSEYLKLLKSNKPKLQWDEKSAEHFFE 270 (318)
T ss_pred HhcCCCCHHHeEEeccccccccccCC-----CCc----------------eeehHHHHHHHHhcCCCceeccCCCcceEE
Confidence 9987 999999999999999998643 011 122334445555567889999996665 78
Q ss_pred eeC---CeEEeecccchhhhhchhhhhcCCcceeeeeccCCCC
Q psy13135 683 YKD---DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDL 722 (996)
Q Consensus 683 ~~~---~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~ 722 (996)
|.+ ++||+|||++|++.|+++++++++ |+|+|++|+++.
T Consensus 271 y~~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 271 YKNKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred EecCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCch
Confidence 865 689999999999999999999999 999999998753
No 11
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=3.7e-46 Score=430.93 Aligned_cols=243 Identities=26% Similarity=0.468 Sum_probs=186.5
Q ss_pred eEEEEEecccccccCCCccCCCCCCCCc--ceEEEEEEEEeeCCCeEeecCCCccccccchhhHHHHHHHHhCCCceEEE
Q psy13135 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLL 175 (996)
Q Consensus 98 ~~vCYy~~wa~~r~g~~~~~~~~i~~~l--CTHiiy~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvll 175 (996)
+|||||++||+||+|.++|.|++||+.+ ||||||||++|++++.... ..+++.+...+.|++|.+||++||+|||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIK-SLNEDLDLDKSHYRAITSLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEE-ecCcccchhhhHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999999999987 9999999999998653322 223333333578999999999999999999
Q ss_pred EecCCCcc----------ce------------eccc----ccCCcccccccccCCc------------------------
Q psy13135 176 AIGKLSLE----------EL------------NGIP----RANNAKDVDWAKVAGN------------------------ 205 (996)
Q Consensus 176 avGG~~~~----------~~------------~~~~----~~fDG~dldWeyP~~~------------------------ 205 (996)
|||||+.+ .| ++++ |+|||||||||||+..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 99999642 22 2222 9999999999999631
Q ss_pred -------h------hhhhhcCC---C---------c------------c--ccceeeec-----ccCCC--CC-CCCCCC
Q psy13135 206 -------V------EVETVTKP---A---------P------------I--KIDIFCYM-----TSWSQ--AR-PGAGKF 238 (996)
Q Consensus 206 -------~------~~~~~~~~---~---------~------------i--~~d~i~~m-----~~w~~--~~-~~apl~ 238 (996)
+ .+++++.. . | | .||||||| +.|.. .+ |+|||+
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~ 239 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIY 239 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchhccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccC
Confidence 1 23444321 1 1 1 19999999 67754 46 999999
Q ss_pred CCCCCCCCcce---------------eEE---------EeeCCh------------------------------hhhhHh
Q psy13135 239 GPENIDPKLCT---------------HVI---------YALSTP------------------------------RRVCEM 264 (996)
Q Consensus 239 ~~~~~~~~~~~---------------kl~---------~~l~~~------------------------------~eiC~~ 264 (996)
........+++ ||+ |+|.++ +|||.+
T Consensus 240 ~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~~ 319 (413)
T cd02873 240 ELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICSK 319 (413)
T ss_pred CCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHHHh
Confidence 75422111111 665 665310 799987
Q ss_pred hhc---------CCeEEEcCCCc-eeeEEe-------CCEEEEcCChhHHHHHHHHHHhcCCeeEEEEeccCCCCCCccc
Q psy13135 265 LRN---------GAGYVWDDEMK-VPYLVH-------GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVC 327 (996)
Q Consensus 265 ~~~---------~~~~~~d~~~~-~py~~~-------~~~Wv~ydd~~s~~~K~~~~~~~~lgG~~~w~~d~DDf~g~~C 327 (996)
++. .|+..||++.+ .||+|+ .++||||||++||+.|++|++++||||+|+|++++|||+|. |
T Consensus 320 ~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~-c 398 (413)
T cd02873 320 LPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQ-C 398 (413)
T ss_pred hccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCC-c
Confidence 754 25677898877 599995 25899999999999999999999999999999999999997 8
Q ss_pred CCCCCchhhHHHHhhh
Q psy13135 328 GGDVKYPLIGAMREEL 343 (996)
Q Consensus 328 g~~~~~pll~~i~~~~ 343 (996)
+++ +||||++|+..|
T Consensus 399 ~~~-~~pll~~i~~~~ 413 (413)
T cd02873 399 TGD-KFPILRSAKYRL 413 (413)
T ss_pred CCC-CChHHHHHHhhC
Confidence 654 899999998754
No 12
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=2.7e-44 Score=408.01 Aligned_cols=293 Identities=25% Similarity=0.416 Sum_probs=232.8
Q ss_pred ceeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEc
Q psy13135 376 KIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIG 455 (996)
Q Consensus 376 ~~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIG 455 (996)
++.|+||...- ..-..++++++|||... + .. + ..+....+++ ++||+++ |
T Consensus 35 ~~~~~~~~~~~---------~~~~~~~~~~~tti~~~------~------~~---~----~~~~~~A~~~-~v~v~~~-~ 84 (358)
T cd02875 35 RFEFLVFSVNS---------TNYPNYDWSKVTTIAIF------G------DI---D----DELLCYAHSK-GVRLVLK-G 84 (358)
T ss_pred ceEEEEEEeCC---------CcCcccccccceEEEec------C------CC---C----HHHHHHHHHc-CCEEEEE-C
Confidence 46899999652 22356789999999864 1 11 1 2444444444 9999987 3
Q ss_pred CCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC--ccCHHHHHHHHHHHHHHHHhhhcccCCCceE
Q psy13135 456 GWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--ADDRASYVNLLKELRLAFEGEAKTSGEPRLL 533 (996)
Q Consensus 456 G~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~--~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~ 533 (996)
+.. ...+++++.|++||+++++++++|||||||||||||.. +.++++|+.||++||++|++.+ ++++
T Consensus 85 ~~~------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~ 153 (358)
T cd02875 85 DVP------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQ 153 (358)
T ss_pred ccC------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcE
Confidence 221 23578999999999999999999999999999999974 5689999999999999998764 2479
Q ss_pred EEEeecCchhhhhc-CCChhhhhccccEEEEeeccCCCC-CCC--CcCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy13135 534 LTAAVPASFEAIAA-GYDVPEISKYLDFINVMTYDFHGQ-WER--QVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGA 609 (996)
Q Consensus 534 Lsvavp~~~~~~~~-~yd~~~l~~~vD~vnvMtYD~~g~-w~~--~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gv 609 (996)
||+++|..+..... .||+++|++++|||+|||||+|++ |+. .+|+++|+. +++.+++.|+..|+
T Consensus 154 Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------------~v~~~v~~~~~~gv 221 (358)
T cd02875 154 ISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------------QTLSGYNNFTKLGI 221 (358)
T ss_pred EEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------------hHHHHHHHHHHcCC
Confidence 99999876554443 499999999999999999999985 752 577888764 57889999999999
Q ss_pred CCCCeeeccccceeeeEecCCCCC-----CCCCCCCCCCCCCcccc-cCcceeehhhhccccCCCceEEEcCCCCcceE-
Q psy13135 610 PKEKLMIGMPTYGRSFTLVDPTKF-----DIGAPASGGGEPGKYTA-EAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFA- 682 (996)
Q Consensus 610 p~~KLvLGlp~YG~~~~l~~~~~~-----~~g~p~~g~g~~g~~t~-~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~- 682 (996)
|++|||||||+|||.|++.++... ..+.|..|.+ ++. ..+.++|.|||+.++..+++..||+.+++||.
T Consensus 222 p~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~~----~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~ 297 (358)
T cd02875 222 DPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGAN----CSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYN 297 (358)
T ss_pred CHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCCCC----CcCCCCCccCHHHHHHHHhcCCCceeeccccccceEE
Confidence 999999999999999998665411 1223333221 122 23578999999988877788999999999987
Q ss_pred eeC---C-eEEeecccchhhhhchhhhhcCCcceeeeeccCCCCCCc
Q psy13135 683 YKD---D-QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTP 725 (996)
Q Consensus 683 ~~~---~-~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~ 725 (996)
|.+ . +||||||++|++.|+++++++||||+++|++|+||+++.
T Consensus 298 y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~ 344 (358)
T cd02875 298 YKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGL 344 (358)
T ss_pred EecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeccccccCCC
Confidence 432 2 699999999999999999999999999999999999876
No 13
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=3.6e-44 Score=402.73 Aligned_cols=293 Identities=25% Similarity=0.418 Sum_probs=237.4
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCC
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGW 457 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~ 457 (996)
.|+|||++|.... |....-..+++|||++.++.+.+++. +.... ..++....+++ ++|||++||||
T Consensus 3 ~~~g~~~~~~~~~-----~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~~~-------~~~~~~~a~~~-~~kv~~~i~~~ 68 (313)
T cd02874 3 EVLGYYTPRNGSD-----YESLRANAPYLTYIAPFWYGVDADGT-LTGLP-------DERLIEAAKRR-GVKPLLVITNL 68 (313)
T ss_pred eEEEEEecCCCch-----HHHHHHhcCCCCEEEEEEEEEcCCCC-CCCCC-------CHHHHHHHHHC-CCeEEEEEecC
Confidence 5899999998741 33333456899999999999986543 21111 13455554555 99999999999
Q ss_pred C---CCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEE
Q psy13135 458 A---FGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 534 (996)
Q Consensus 458 ~---~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~L 534 (996)
. +++..|+.++++++.|++||+++++++++|+|||||||||+|. .+++.+|+.||++||++|++.+ ++|
T Consensus 69 ~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~fl~~lr~~l~~~~-------~~l 140 (313)
T cd02874 69 TNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP-PEDREAYTQFLRELSDRLHPAG-------YTL 140 (313)
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHHHHHHHHHhhhcC-------cEE
Confidence 7 5667899999999999999999999999999999999999985 6789999999999999998643 678
Q ss_pred EEeecCchh-----hhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy13135 535 TAAVPASFE-----AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGA 609 (996)
Q Consensus 535 svavp~~~~-----~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gv 609 (996)
++++++... .....||+++|++++|+|+||+||+|++|. .+|+++|+. .++..+++++ .|+
T Consensus 141 sv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~~~------------~~~~~~~~~~-~gv 206 (313)
T cd02874 141 STAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAPIG------------WVERVLQYAV-TQI 206 (313)
T ss_pred EEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCC-CCCccCChH------------HHHHHHHHHH-hcC
Confidence 888766432 223578999999999999999999999874 578888764 3556666554 899
Q ss_pred CCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceE-eeC---
Q psy13135 610 PKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFA-YKD--- 685 (996)
Q Consensus 610 p~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~-~~~--- 685 (996)
|++||+||||+|||.|++.++. . ...+.++|.++|+++...+++..||+.+++||. |.+
T Consensus 207 p~~KlvlGip~YG~~w~~~~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g 269 (313)
T cd02874 207 PREKILLGIPLYGYDWTLPYKK----------G-------GKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQG 269 (313)
T ss_pred CHHHEEEeecccccccccCCCC----------C-------cCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCC
Confidence 9999999999999999875411 0 123567888999998888999999999999975 432
Q ss_pred -CeEEeecccchhhhhchhhhhcCCcceeeeeccCCCCC
Q psy13135 686 -DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723 (996)
Q Consensus 686 -~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~s 723 (996)
.+||+|||++|++.|+++++++|+||+++|++++||.+
T Consensus 270 ~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 270 RRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred CEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 37999999999999999999999999999999999863
No 14
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=3.9e-44 Score=410.60 Aligned_cols=240 Identities=43% Similarity=0.834 Sum_probs=194.3
Q ss_pred EEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCC-CeEeecCCCccccccchhhHHHHHHHHhCCCceEEEEe
Q psy13135 99 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKG-KLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 177 (996)
Q Consensus 99 ~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllav 177 (996)
|||||++|+.||+|.++|.+++||+++||||||+|+.++.+ .+...+ ++.+...+.+++|..||++||+|||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~---~~~d~~~~~~~~~~~lk~~~p~lkvlisi 77 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILD---EWNDIDLGLYERFNALKEKNPNLKTLLAI 77 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecC---chhhhhhhHHHHHHHHHhhCCCceEEEEE
Confidence 69999999999999999999999999999999999999876 444333 22233457899999999999999999999
Q ss_pred cCCCcc-----ce------------eccc----ccCCcccccccccCC-----ch------hhhhhc----CC--C----
Q psy13135 178 GKLSLE-----EL------------NGIP----RANNAKDVDWAKVAG-----NV------EVETVT----KP--A---- 215 (996)
Q Consensus 178 GG~~~~-----~~------------~~~~----~~fDG~dldWeyP~~-----~~------~~~~~~----~~--~---- 215 (996)
|||+.+ .| ++++ |+|||+|||||||+. .+ .+++++ .. .
T Consensus 78 GG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls 157 (362)
T cd02872 78 GGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLT 157 (362)
T ss_pred cCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEE
Confidence 999754 12 2222 999999999999974 11 122221 11 1
Q ss_pred ---c--------------c--ccceeeec-----ccCCCCC-CCCCCCCCCCCC---CCcc------------e---eEE
Q psy13135 216 ---P--------------I--KIDIFCYM-----TSWSQAR-PGAGKFGPENID---PKLC------------T---HVI 252 (996)
Q Consensus 216 ---~--------------i--~~d~i~~m-----~~w~~~~-~~apl~~~~~~~---~~~~------------~---kl~ 252 (996)
| + .+|||+|| +.|...+ |+|||+..+.+. ..++ + ||+
T Consensus 158 ~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~Klv 237 (362)
T cd02872 158 AAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLV 237 (362)
T ss_pred EEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeE
Confidence 0 1 19999999 7798888 999999866531 1111 1 666
Q ss_pred ---------EeeCCh---------------------------hhhhHhhhcCCeEEEcCCCceeeEEeCCEEEEcCChhH
Q psy13135 253 ---------YALSTP---------------------------RRVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKS 296 (996)
Q Consensus 253 ---------~~l~~~---------------------------~eiC~~~~~~~~~~~d~~~~~py~~~~~~Wv~ydd~~s 296 (996)
|++.++ .|||+.++.+|+..||+.+++||++++++||+|||++|
T Consensus 238 lGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~D~~~~~~y~~~~~~~v~ydd~~S 317 (362)
T cd02872 238 LGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFLKSGWTVVWDDEQKVPYAYKGNQWVGYDDEES 317 (362)
T ss_pred eccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhhcCCcEEEEeCCcceeEEEECCEEEEeCCHHH
Confidence 666421 78999776679999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeccCCCCCCcccCCCCCchhhHHHHhhh
Q psy13135 297 IRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 343 (996)
Q Consensus 297 ~~~K~~~~~~~~lgG~~~w~~d~DDf~g~~Cg~~~~~pll~~i~~~~ 343 (996)
|+.|++|++++||||+|+|+|++|||+|. ||.+ +||||++|+++|
T Consensus 318 i~~K~~~~~~~~lgGv~iW~l~~DD~~g~-cg~~-~~pLl~~i~~~~ 362 (362)
T cd02872 318 IALKVQYLKSKGLGGAMVWSIDLDDFRGT-CGQG-KYPLLNAINRAL 362 (362)
T ss_pred HHHHHHHHHhCCCceEEEEeeecCcCCCc-cCCC-CCcHHHHHHHhC
Confidence 99999999999999999999999999997 9975 899999999864
No 15
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=4.1e-40 Score=366.12 Aligned_cols=289 Identities=19% Similarity=0.313 Sum_probs=225.2
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEee--CCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEc
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK--DHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIG 455 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~--~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIG 455 (996)
.++|||+.|... .+.........+|||+..|+.+. ++.+.... +.+....+..+|+++|-++++.+++
T Consensus 1 ~~l~~~~~w~~~-----s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~-----d~~~~~~~~~~k~~~~~l~~~~~~~ 70 (298)
T cd06549 1 IALAFYTPWDDA-----SFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV-----DPQGVAIIAAAKAHPKVLPLVQNIS 70 (298)
T ss_pred CeeEEEecCChh-----hHHHHHHhhccCCEEeceeEEEecCCCceeccC-----ChHHHHHHHHHHcCCceeEEEEecC
Confidence 378999999653 23334445678999999999996 34443322 2223344567777888889999999
Q ss_pred CCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEE
Q psy13135 456 GWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLT 535 (996)
Q Consensus 456 G~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Ls 535 (996)
|+.+++..|+.++++++.|++||+++++++++|+|||||||||++. ++++++|+.||++||++|++.+ +.|+
T Consensus 71 ~~~~~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~-~~d~~~~~~fl~eL~~~l~~~~-------~~ls 142 (298)
T cd06549 71 GGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP-ADDLPKYVAFLSELRRRLPAQG-------KQLT 142 (298)
T ss_pred CCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC-hhHHHHHHHHHHHHHHHhhhcC-------cEEE
Confidence 8876667799999999999999999999999999999999999985 6799999999999999998653 6899
Q ss_pred EeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCee
Q psy13135 536 AAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLM 615 (996)
Q Consensus 536 vavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~KLv 615 (996)
+++|+.. ..||+++|++++|+|+||+||+|+++ ++++|+++.. .++..+.+ +..|+|++||+
T Consensus 143 v~v~~~~----~~~d~~~l~~~~D~v~lMtYD~~~~~----~~~gp~a~~~---------~~~~~~~~-~~~~vp~~Klv 204 (298)
T cd06549 143 VTVPADE----ADWNLKALARNADKLILMAYDEHYQG----GAPGPIASQD---------WFESNLAQ-AVKKLPPEKLI 204 (298)
T ss_pred EEecCCC----CCCCHHHHHHhCCEEEEEEeccCCCC----CCCCCCCChh---------hHHHHHHH-HHhCCCHHHEE
Confidence 9998763 35899999999999999999999875 3556666533 23334433 34789999999
Q ss_pred eccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcc-eEeeC----CeEEe
Q psy13135 616 IGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVP-FAYKD----DQWVG 690 (996)
Q Consensus 616 LGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~p-y~~~~----~~wv~ 690 (996)
||||+|||.|++... + ..++..+...++...+....||+.+..| |.|.+ .++||
T Consensus 205 lGip~YG~~w~~~~~------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw 263 (298)
T cd06549 205 VALGSYGYDWTKGGN------------T---------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVW 263 (298)
T ss_pred EEecccCccccCCCC------------C---------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEE
Confidence 999999999986321 0 0122334444455556778888877666 56642 27999
Q ss_pred ecccchhhhhchhhhhcCCcceeeeeccCCCCC
Q psy13135 691 FDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723 (996)
Q Consensus 691 ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~s 723 (996)
|+|.+|++.|++++++++++|+++|++|++|.+
T Consensus 264 ~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 264 MLDAVTLFNQLKAVQRLGPAGVALWRLGSEDPG 296 (298)
T ss_pred eccHHHHHHHHHHHHHcCCCcEEEEeccCCCCC
Confidence 999999999999999999999999999999753
No 16
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.4e-39 Score=354.14 Aligned_cols=241 Identities=27% Similarity=0.489 Sum_probs=196.6
Q ss_pred EEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCC-eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCC
Q psy13135 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDH-KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGW 457 (996)
Q Consensus 379 vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~-~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~ 457 (996)
|+|||++|+.+. ..+++++..+||||+|+|+.++++ ++...... ..+..+.+..+ .+++|||+|||||
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~~-----~~~~~~~~~~~-~~~~kvl~sigg~ 69 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTLNANPVR-----SELNSVVNAAH-AHNVKILISLAGG 69 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeEEecCcH-----HHHHHHHHHHH-hCCCEEEEEEcCC
Confidence 689999998753 368999999999999999999854 55543221 12333333332 2499999999998
Q ss_pred CCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEe
Q psy13135 458 AFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAA 537 (996)
Q Consensus 458 ~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsva 537 (996)
.. ..|..++++++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++.+ ++||++
T Consensus 70 ~~--~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~-------~~lt~a 138 (253)
T cd06545 70 SP--PEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEG-------KLLTAA 138 (253)
T ss_pred CC--CcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcC-------cEEEEE
Confidence 74 347779999999999999999999999999999999999643 7899999999999998643 689999
Q ss_pred ecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCC-CcCCCCCCCCCCCCccccccccHHHHHHHHHHcCC-CCCCee
Q psy13135 538 VPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER-QVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGA-PKEKLM 615 (996)
Q Consensus 538 vp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~-~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gv-p~~KLv 615 (996)
+++... .+...++.+++|||+||+||+||+|.. .+|+++|+. .++..+++|+..|+ |++||+
T Consensus 139 v~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------------~~~~~v~~~~~~g~ip~~Klv 202 (253)
T cd06545 139 VSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------------DAVNDLNYWNERGLASKDKLV 202 (253)
T ss_pred ccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------------hHHHHHHHHHHcCCCCHHHEE
Confidence 887532 223467889999999999999999964 577777764 46788999999998 999999
Q ss_pred eccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcceEeeCCeEEeecccc
Q psy13135 616 IGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDDQWVGFDDER 695 (996)
Q Consensus 616 LGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~py~~~~~~wv~ydd~~ 695 (996)
||||+|||.| +|+...
T Consensus 203 lGlp~YG~~w----------------------------------------------------------------~~~~~~ 218 (253)
T cd06545 203 LGLPFYGYGF----------------------------------------------------------------YYNGIP 218 (253)
T ss_pred EEeCCccccc----------------------------------------------------------------cCCCHH
Confidence 9999999988 245556
Q ss_pred hhhhhchhhhhcCCcceeeeeccCCCC
Q psy13135 696 SLKMKMDWLKEDGYGGIMIWSVDMDDL 722 (996)
Q Consensus 696 Sl~~K~~~~k~~~lgGi~vW~l~~Dd~ 722 (996)
++..|.+++++. +||+|+|++++|..
T Consensus 219 ~~~~~~~~~~~~-~gG~~~w~~~~d~~ 244 (253)
T cd06545 219 TIRNKVAFAKQN-YGGVMIWELSQDAS 244 (253)
T ss_pred HHHHHHHHHHHh-cCeEEEEeccCCCC
Confidence 789999999999 99999999999863
No 17
>KOG2806|consensus
Probab=100.00 E-value=1.3e-40 Score=385.86 Aligned_cols=247 Identities=24% Similarity=0.444 Sum_probs=193.9
Q ss_pred CCCCceEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCeEeecCCCccccccchhhHHHHHHHHhCCCce
Q psy13135 93 DDSKYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLK 172 (996)
Q Consensus 93 ~~~~~~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lK 172 (996)
......++||+..|++||.+.+.+.++++++.+|||+||||+.++.++...+..+- ..+..++....+|++||+||
T Consensus 48 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~----~~~~f~~~~~~~k~~n~~vK 123 (432)
T KOG2806|consen 48 EFTAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR----TMNRFSSYNQTAKSSNPTVK 123 (432)
T ss_pred cccCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch----hhhhhHHHHHHHHhhCCCce
Confidence 33457899999999999999989999999999999999999999977654443321 12457899999999999999
Q ss_pred EEEEecCCCc-c----ce------------eccc----ccCCcccccccccC--Cch------hhhhhcC----------
Q psy13135 173 TLLAIGKLSL-E----EL------------NGIP----RANNAKDVDWAKVA--GNV------EVETVTK---------- 213 (996)
Q Consensus 173 vllavGG~~~-~----~~------------~~~~----~~fDG~dldWeyP~--~~~------~~~~~~~---------- 213 (996)
+|||||||+. . .| |++. |+|||+||+||||. ..+ .++|+|.
T Consensus 124 ~llSIGG~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~ 203 (432)
T KOG2806|consen 124 VMISIGGSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSP 203 (432)
T ss_pred EEEEecCCCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999942 2 22 3333 99999999999994 333 2333321
Q ss_pred -CC----------c---------c-----ccceeeec-----ccCCC--CC-CCCCCCCCCC-CCCCcc-----------
Q psy13135 214 -PA----------P---------I-----KIDIFCYM-----TSWSQ--AR-PGAGKFGPEN-IDPKLC----------- 248 (996)
Q Consensus 214 -~~----------~---------i-----~~d~i~~m-----~~w~~--~~-~~apl~~~~~-~~~~~~----------- 248 (996)
+. + | .+|||||| |+|+. .| |+||||+... ....+|
T Consensus 204 ~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~ 283 (432)
T KOG2806|consen 204 DTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEK 283 (432)
T ss_pred CccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhc
Confidence 00 0 1 29999999 89999 67 9999998753 111111
Q ss_pred ----eeEE---------EeeCCh---------------------------hhhhHhhhcCCeEEEcCCCceeeEEe--CC
Q psy13135 249 ----THVI---------YALSTP---------------------------RRVCEMLRNGAGYVWDDEMKVPYLVH--GD 286 (996)
Q Consensus 249 ----~kl~---------~~l~~~---------------------------~eiC~~~~~~~~~~~d~~~~~py~~~--~~ 286 (996)
-||+ |+|.+. +|||+.+.+-...+||+++++||+++ ++
T Consensus 284 ~~~~~Kl~~gip~yg~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~~~~~d~~~~~~Y~~~~~~~ 363 (432)
T KOG2806|consen 284 GLPPSKLVLALPFYGRSWQLLEDSRSSAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTGVTHWDEETQTPYLYNIPYD 363 (432)
T ss_pred CCCchheEEEEecceehhhhcCCcCCCCCccCCCcccCccccccCceeeHHHHHHHhcccCCceecCCceeeeEEecCCC
Confidence 1554 444441 89999654434788999999999999 99
Q ss_pred EEEEcCChhHHHHHHHHHHhcCCeeEEEEeccCCCCCCcccCCCCCchhhHHHHhhh
Q psy13135 287 QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 343 (996)
Q Consensus 287 ~Wv~ydd~~s~~~K~~~~~~~~lgG~~~w~~d~DDf~g~~Cg~~~~~pll~~i~~~~ 343 (996)
+||+|||++||++|++||+++||||||||+||+|||+|++|+...++|++.++.+.+
T Consensus 364 ~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~ 420 (432)
T KOG2806|consen 364 QWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKN 420 (432)
T ss_pred eEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeeccccc
Confidence 999999999999999999999999999999999999998776435899999888765
No 18
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=4.4e-37 Score=346.07 Aligned_cols=215 Identities=27% Similarity=0.501 Sum_probs=161.9
Q ss_pred EEEEEecccccccCCCccCCC-CCCCCcceEEEEEEEEeeCCCeEeecCC--------------CccccccchhhHHHHH
Q psy13135 99 VVCYYTNWSQYRTKIGKFQPE-DIEPDLCTHIIFAFGWLKKGKLSSFESN--------------DETKDGKVGLYERIEQ 163 (996)
Q Consensus 99 ~vCYy~~wa~~r~g~~~~~~~-~i~~~lCTHiiy~f~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 163 (996)
|||||++|+.||++ +.++ +||+.+||||||||+.++.++....... ....+...+.+++|..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 68999999999974 4666 7999999999999999997654332110 0112234678999999
Q ss_pred HHHhCCCceEEEEecCCCcc----ce------------eccc----ccCCcccccccccCCc----------h------h
Q psy13135 164 LKKANPKLKTLLAIGKLSLE----EL------------NGIP----RANNAKDVDWAKVAGN----------V------E 207 (996)
Q Consensus 164 lK~~~p~lKvllavGG~~~~----~~------------~~~~----~~fDG~dldWeyP~~~----------~------~ 207 (996)
||++||+||||||||||+.. .| ++++ |+|||||||||||+.. + .
T Consensus 78 lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999999755 22 2222 9999999999999741 1 1
Q ss_pred hhhhcC---C--------C------c-------------c--ccceeeec-----ccCCCCC-CCCCCCCCCCCC-CCcc
Q psy13135 208 VETVTK---P--------A------P-------------I--KIDIFCYM-----TSWSQAR-PGAGKFGPENID-PKLC 248 (996)
Q Consensus 208 ~~~~~~---~--------~------~-------------i--~~d~i~~m-----~~w~~~~-~~apl~~~~~~~-~~~~ 248 (996)
+++++. . . | | .||||||| |.|+..+ ||||||..+.+. ...+
T Consensus 158 l~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~~~~~ 237 (322)
T cd06548 158 LKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPGGYS 237 (322)
T ss_pred HHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 233321 1 1 1 1 19999999 8899889 999999876431 1111
Q ss_pred ---------------eeEEEeeCChhhhhHhhhcCCeEEEcCCCceeeEEeC--CEEEEcCChhHHHHHHHHHHhcCCee
Q psy13135 249 ---------------THVIYALSTPRRVCEMLRNGAGYVWDDEMKVPYLVHG--DQWVGFDDEKSIRYKMNWLKDNGYGG 311 (996)
Q Consensus 249 ---------------~kl~~~l~~~~eiC~~~~~~~~~~~d~~~~~py~~~~--~~Wv~ydd~~s~~~K~~~~~~~~lgG 311 (996)
-||+..|.-.-.-+. .++..||+++++||++++ ++||+|||++||+.|++|++++||||
T Consensus 238 v~~~v~~~~~~gvp~~KlvlGip~YGr~~~----~~~~~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgG 313 (322)
T cd06548 238 VDAAVNYYLSAGVPPEKLVLGVPFYGRGWT----GYTRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGG 313 (322)
T ss_pred HHHHHHHHHHcCCCHHHeEEEecccccccC----CcEEEEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCcc
Confidence 177744422100011 178899999999999998 99999999999999999999999999
Q ss_pred EEEEeccCC
Q psy13135 312 AMVWTVDMD 320 (996)
Q Consensus 312 ~~~w~~d~D 320 (996)
+|+|++++|
T Consensus 314 v~~W~l~~D 322 (322)
T cd06548 314 VMFWELSGD 322 (322)
T ss_pred EEEEeccCC
Confidence 999999997
No 19
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-37 Score=334.46 Aligned_cols=241 Identities=29% Similarity=0.522 Sum_probs=182.2
Q ss_pred cCCCCceEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCe----------Eeec-------CCCcccccc
Q psy13135 92 KDDSKYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKL----------SSFE-------SNDETKDGK 154 (996)
Q Consensus 92 ~~~~~~~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~----------~~~~-------~~~~~~~~~ 154 (996)
.....+|||+||++|++|-. +.|.|.|||....|||+|||+.|+.++- .... ..|.|.+.-
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~ 110 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPL 110 (441)
T ss_pred CCCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccc
Confidence 35566899999999999987 7899999999999999999999986431 0000 123344335
Q ss_pred chhhHHHHHHHHhCCCceEEEEecCCCcc----ce------------eccc----ccCCcccccccccCCch--------
Q psy13135 155 VGLYERIEQLKKANPKLKTLLAIGKLSLE----EL------------NGIP----RANNAKDVDWAKVAGNV-------- 206 (996)
Q Consensus 155 ~~~~~~~~~lK~~~p~lKvllavGG~~~~----~~------------~~~~----~~fDG~dldWeyP~~~~-------- 206 (996)
+|+|..+..||+++|+||+++|||||+.. .| |+++ |+|||+|||||||++..
T Consensus 111 ~G~~~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~ 190 (441)
T COG3325 111 KGHFGALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRP 190 (441)
T ss_pred cchHHHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCc
Confidence 78999999999999999999999999766 33 4444 99999999999998432
Q ss_pred --------hhhhhcCC---------C--------c--------c-------ccceeeec-----ccCCCCC-CCCCCCCC
Q psy13135 207 --------EVETVTKP---------A--------P--------I-------KIDIFCYM-----TSWSQAR-PGAGKFGP 240 (996)
Q Consensus 207 --------~~~~~~~~---------~--------~--------i-------~~d~i~~m-----~~w~~~~-~~apl~~~ 240 (996)
.+++||++ | | + -|||||+| |.|...+ ||||||+.
T Consensus 191 ~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~ 270 (441)
T COG3325 191 KDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGT 270 (441)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhhcccHHHHHHHHhhhheeeeecccccccccccccccccC
Confidence 34555442 1 1 1 19999999 9999999 99999986
Q ss_pred CCCCCCcc-------------------------eeEE-----E----------ee---CChhhhhH--------------
Q psy13135 241 ENIDPKLC-------------------------THVI-----Y----------AL---STPRRVCE-------------- 263 (996)
Q Consensus 241 ~~~~~~~~-------------------------~kl~-----~----------~l---~~~~eiC~-------------- 263 (996)
+.+....+ .||+ | .+ ...++-|.
T Consensus 271 ~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n~ 350 (441)
T COG3325 271 PKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNG 350 (441)
T ss_pred CCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccccc
Confidence 65521100 1555 1 11 11111111
Q ss_pred ---h-----h------hcCCeEEEcCCCceeeEEeC--CEEEEcCChhHHHHHHHHHHhcCCeeEEEEeccCCCCCCccc
Q psy13135 264 ---M-----L------RNGAGYVWDDEMKVPYLVHG--DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVC 327 (996)
Q Consensus 264 ---~-----~------~~~~~~~~d~~~~~py~~~~--~~Wv~ydd~~s~~~K~~~~~~~~lgG~~~w~~d~DDf~g~~C 327 (996)
. + +.++.+.||+++++||.|.. +++|||||++||+.|++||+++||||+|+|.++.| .
T Consensus 351 ~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD-~----- 424 (441)
T COG3325 351 DKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD-E----- 424 (441)
T ss_pred CccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC-c-----
Confidence 0 0 23478899999999999975 78999999999999999999999999999999988 1
Q ss_pred CCCCCchhhHHHHhhhc
Q psy13135 328 GGDVKYPLIGAMREELN 344 (996)
Q Consensus 328 g~~~~~pll~~i~~~~~ 344 (996)
..-||+++++.+.
T Consensus 425 ----n~~llna~~~~l~ 437 (441)
T COG3325 425 ----NGVLLNAVNEGLG 437 (441)
T ss_pred ----chhHHHHhhcccC
Confidence 3458999998763
No 20
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.2e-36 Score=344.81 Aligned_cols=211 Identities=18% Similarity=0.380 Sum_probs=157.8
Q ss_pred eEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCeEeecCCCccccccchhhHHHHHHHHhCCCceEEEEe
Q psy13135 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 177 (996)
Q Consensus 98 ~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllav 177 (996)
|+||||++|+.||++ .+|.|++||+.+||||||+|+.++.+...... + ..+.+.+|.+||+ |||||||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~--~-----~~~~~~~~~~~k~----lkvllsi 68 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDVS--S-----VQEQFSDFKKLKG----VKKILSF 68 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEeec--c-----cHHHHHHHHhhcC----cEEEEEE
Confidence 589999999999997 59999999999999999999999876322221 1 1246788887764 9999999
Q ss_pred cCCCccc----------e-----------eccc----ccCCcccccccccCC---------c--h------hhhhhcCC-
Q psy13135 178 GKLSLEE----------L-----------NGIP----RANNAKDVDWAKVAG---------N--V------EVETVTKP- 214 (996)
Q Consensus 178 GG~~~~~----------~-----------~~~~----~~fDG~dldWeyP~~---------~--~------~~~~~~~~- 214 (996)
|||+.+. | ++++ |+|||||||||||+. . + .++++|..
T Consensus 69 GG~~~s~~~~~~~~f~~~~~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l 148 (345)
T cd02878 69 GGWDFSTSPSTYQIFRDAVKPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKL 148 (345)
T ss_pred eCCCCCCCCccchhhHhhcCHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 9997531 1 1221 999999999999963 1 1 24444321
Q ss_pred --C-------c-------------c--ccceeeec-----ccCCCCC-CCCCCCCCC-----CCCCC-----------cc
Q psy13135 215 --A-------P-------------I--KIDIFCYM-----TSWSQAR-PGAGKFGPE-----NIDPK-----------LC 248 (996)
Q Consensus 215 --~-------~-------------i--~~d~i~~m-----~~w~~~~-~~apl~~~~-----~~~~~-----------~~ 248 (996)
. | + .||||||| |.|+..+ |++|..... ..... ..
T Consensus 149 ~~~~~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~G 228 (345)
T cd02878 149 PSGKSLSIAAPASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAG 228 (345)
T ss_pred CcCcEEEEEcCCChhhhcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcC
Confidence 1 1 1 19999999 8899887 777632211 00000 01
Q ss_pred e---eEE---------EeeCCh------------------------------hhhhHhh--hcCCeEEEcCCCceeeE-E
Q psy13135 249 T---HVI---------YALSTP------------------------------RRVCEML--RNGAGYVWDDEMKVPYL-V 283 (996)
Q Consensus 249 ~---kl~---------~~l~~~------------------------------~eiC~~~--~~~~~~~~d~~~~~py~-~ 283 (996)
+ ||+ |+|.++ +|||..+ +.+|+..||+++++||. +
T Consensus 229 vp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~~~~~y~~~ 308 (345)
T cd02878 229 VPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTDSDSDILVY 308 (345)
T ss_pred CCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecCCCccEEEE
Confidence 1 666 776631 6888754 34689999999999987 6
Q ss_pred eCCEEEEcCChhHHHHHHHHHHhcCCeeEEEEeccCC
Q psy13135 284 HGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320 (996)
Q Consensus 284 ~~~~Wv~ydd~~s~~~K~~~~~~~~lgG~~~w~~d~D 320 (996)
.++|||+|||++||+.|++|++++||||+|+|+||+|
T Consensus 309 ~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 309 DDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 6789999999999999999999999999999999997
No 21
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=4.5e-36 Score=333.67 Aligned_cols=209 Identities=26% Similarity=0.489 Sum_probs=154.4
Q ss_pred ceEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCeEeecCCCccccccchhhHHHH-HHHHhCCCceEEE
Q psy13135 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIE-QLKKANPKLKTLL 175 (996)
Q Consensus 97 ~~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvll 175 (996)
-+++|||.+|+ ++|.|++||+.+||||||+|+.+++++...... +. ....+.+|. .||+++|+||+||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~-~~----~~~~~~~~~~~~k~~~~~lkvli 71 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVIS-PS----DESEFSTFTETVKRKNPSVKTLL 71 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeec-cc----cHHHHHHHHHHHHHhCCCCeEEE
Confidence 36799999998 589999999999999999999998754221111 11 112456665 7999999999999
Q ss_pred EecCCCcc-----ce------------eccc----ccCCcccccccccCCc-h------hhhhhcC-----------CC-
Q psy13135 176 AIGKLSLE-----EL------------NGIP----RANNAKDVDWAKVAGN-V------EVETVTK-----------PA- 215 (996)
Q Consensus 176 avGG~~~~-----~~------------~~~~----~~fDG~dldWeyP~~~-~------~~~~~~~-----------~~- 215 (996)
|||||+.+ .| ++++ |+|||+|||||||... + .+++++. ..
T Consensus 72 siGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~ 151 (299)
T cd02879 72 SIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPL 151 (299)
T ss_pred EEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcE
Confidence 99999863 22 2222 9999999999999743 2 1222210 00
Q ss_pred ---------c---------------c--ccceeeec-----ccCCCCC--CCCCCCCCCCCC-CC--------cce---e
Q psy13135 216 ---------P---------------I--KIDIFCYM-----TSWSQAR--PGAGKFGPENID-PK--------LCT---H 250 (996)
Q Consensus 216 ---------~---------------i--~~d~i~~m-----~~w~~~~--~~apl~~~~~~~-~~--------~~~---k 250 (996)
+ | .||||||| |+|+..+ |+||||..+... .. ..+ |
T Consensus 152 ~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~K 231 (299)
T cd02879 152 LLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKK 231 (299)
T ss_pred EEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 0 1 19999999 8898755 889999754320 00 011 6
Q ss_pred EEEeeCChhhhhHhhhcCCeEEEcCCCceeeEEeCCEEEEcCChhHHHHHHHHHHhcCCeeEEEEeccCCCCCC
Q psy13135 251 VIYALSTPRRVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 324 (996)
Q Consensus 251 l~~~l~~~~eiC~~~~~~~~~~~d~~~~~py~~~~~~Wv~ydd~~s~~~K~~~~~~~~lgG~~~w~~d~DDf~g 324 (996)
|+..+.- .-.+|+. ||+.++.||++++++||+|||++||+.|++|++++||||+|+|++++||+.+
T Consensus 232 lvlGvp~-------YGr~~~~-~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 232 LVLGLPL-------YGRAWTL-YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred EEEEecc-------ccccccc-cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCccc
Confidence 6644421 1112433 8999999999999999999999999999999999999999999999999876
No 22
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=1.1e-32 Score=291.70 Aligned_cols=175 Identities=42% Similarity=0.791 Sum_probs=145.4
Q ss_pred EEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCCC
Q psy13135 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWA 458 (996)
Q Consensus 379 vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~~ 458 (996)
++|||.+|+.++.+ .+..++.++||||+|+|+.++.++....... .........+..+++++|++|||+|||||.
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~g~kv~~sigg~~ 75 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLSLCTHIIYAFAEISSDGSLNLFGD-KSEEPLKGALEELASKKPGLKVLISIGGWT 75 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcccCCEEEEeeEEECCCCCEecccC-cccHHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 58999999987632 2788999999999999999986543332111 113345677888888889999999999998
Q ss_pred CCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCcc--CHHHHHHHHHHHHHHHHhhhcccCCCceEEEE
Q psy13135 459 FGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGAD--DRASYVNLLKELRLAFEGEAKTSGEPRLLLTA 536 (996)
Q Consensus 459 ~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~--d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsv 536 (996)
.+ ..+ .++++++.|++|++++++++++|+|||||||||+|.... ++.+|+.||++||++|++. +++||+
T Consensus 76 ~~-~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~-------~~~ls~ 146 (210)
T cd00598 76 DS-SPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA-------NYLLTI 146 (210)
T ss_pred CC-CCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc-------CcEEEE
Confidence 53 334 889999999999999999999999999999999997544 5899999999999999764 379999
Q ss_pred eecCchhhhhcCCChhhhhccccEEEEeecc
Q psy13135 537 AVPASFEAIAAGYDVPEISKYLDFINVMTYD 567 (996)
Q Consensus 537 avp~~~~~~~~~yd~~~l~~~vD~vnvMtYD 567 (996)
++|+.......+|++.++.+++|||+||+||
T Consensus 147 a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 147 AVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 9999876654458999999999999999999
No 23
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=6.5e-33 Score=314.65 Aligned_cols=214 Identities=34% Similarity=0.664 Sum_probs=164.4
Q ss_pred eEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCeEeecCCCccccccchhhHHHHHHHHhCCCceEEEEe
Q psy13135 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 177 (996)
Q Consensus 98 ~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllav 177 (996)
++||||++|+.+| ..|.+++|+..+||||||+|+.++.++...+. +...+ .+.+.+|..||++||++|||++|
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~--~~~~~--~~~~~~~~~l~~~~~~~kvl~sv 73 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDGTVTIG--DEWAD--IGNFGQLKALKKKNPGLKVLLSI 73 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCCCEeeC--Ccchh--hhhHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999876 47999999999999999999999875432222 22222 14688999999999999999999
Q ss_pred cCCCcc----ce------------eccc----ccCCcccccccccCC--ch------hhhhhc---C------CC-----
Q psy13135 178 GKLSLE----EL------------NGIP----RANNAKDVDWAKVAG--NV------EVETVT---K------PA----- 215 (996)
Q Consensus 178 GG~~~~----~~------------~~~~----~~fDG~dldWeyP~~--~~------~~~~~~---~------~~----- 215 (996)
|||+.. .| ++++ |+|||+|||||||.. .+ .+++++ . +.
T Consensus 74 gg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi 153 (334)
T smart00636 74 GGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTI 153 (334)
T ss_pred eCCCCCcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEE
Confidence 999763 22 2222 999999999999976 22 122221 1 01
Q ss_pred ---c-----------cc-----cceeeec-----ccCCCCC-CCCCCCCCCCCCCCcc------------e---eEE---
Q psy13135 216 ---P-----------IK-----IDIFCYM-----TSWSQAR-PGAGKFGPENIDPKLC------------T---HVI--- 252 (996)
Q Consensus 216 ---~-----------i~-----~d~i~~m-----~~w~~~~-~~apl~~~~~~~~~~~------------~---kl~--- 252 (996)
+ +. +|||+|| ++|...+ |+|||+....+....+ + ||+
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGi 233 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGI 233 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEee
Confidence 0 12 8999999 7798888 9999997654211111 1 665
Q ss_pred ------EeeCCh---------------------------hhhhHhhhcCCeEEEcCCCceeeEEe-CC-EEEEcCChhHH
Q psy13135 253 ------YALSTP---------------------------RRVCEMLRNGAGYVWDDEMKVPYLVH-GD-QWVGFDDEKSI 297 (996)
Q Consensus 253 ------~~l~~~---------------------------~eiC~~~~~~~~~~~d~~~~~py~~~-~~-~Wv~ydd~~s~ 297 (996)
|++.++ .|||+.+ +|+..||+++++||+|+ ++ +||+|||++||
T Consensus 234 p~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~--~~~~~~d~~~~~~y~~~~~~~~~v~ydd~~Si 311 (334)
T smart00636 234 PFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL--GATVVWDDTAKAPYAYNPGTGQWVSYDDPRSI 311 (334)
T ss_pred ccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc--CcEEEEcCCCceeEEEECCCCEEEEcCCHHHH
Confidence 555311 7899865 89999999999999998 44 99999999999
Q ss_pred HHHHHHHHhcCCeeEEEEeccCC
Q psy13135 298 RYKMNWLKDNGYGGAMVWTVDMD 320 (996)
Q Consensus 298 ~~K~~~~~~~~lgG~~~w~~d~D 320 (996)
+.|++|++++||||+|+|+|++|
T Consensus 312 ~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 312 KAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHhCCCCeEEEEeecCC
Confidence 99999999999999999999987
No 24
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=1.5e-30 Score=282.07 Aligned_cols=205 Identities=24% Similarity=0.327 Sum_probs=154.1
Q ss_pred eEEEEecccCCcCCCCCC-CCCCCCCCCCCcEEEEEEEEeeC-CeeEeCCCcch--hhhhHHHHHHHHHHhCCCceEEEE
Q psy13135 378 DIFCYMTSWSQARPGAGK-FGPENIDPKLCTHVIYAFGTLKD-HKLTLNEDKEK--DEAGKFEALMQLREKNPDIKILLA 453 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~-~~~~~i~~~~cTHIiyafa~v~~-~~~~~~~~~~~--~~~~~~~~~~~lk~~np~lKvllS 453 (996)
|+||||++|..+++.... +.+..++..+||||||+|+.++. +++.+.+.... .....++.+..+| ++++|||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~--~~g~KVllS 78 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQ--SSGVKVMGM 78 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHH--hCCCEEEEE
Confidence 689999999877654333 33446788999999999999985 45555443211 1235566677675 469999999
Q ss_pred EcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceE
Q psy13135 454 IGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLL 533 (996)
Q Consensus 454 IGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~ 533 (996)
||||+.+ .|+.++++++.|++|++++++++++|+|||||||||||. +..+|+.|+++||++|.+ +++
T Consensus 79 iGG~~~~--~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~--------~~~ 145 (256)
T cd06546 79 LGGAAPG--SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGP--------DFI 145 (256)
T ss_pred ECCCCCC--CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCC--------CcE
Confidence 9999843 388888999999999999999999999999999999985 457999999999999842 378
Q ss_pred EEEeecCch----hhhhcCCChhhhh----ccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHH
Q psy13135 534 LTAAVPASF----EAIAAGYDVPEIS----KYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWV 605 (996)
Q Consensus 534 Lsvavp~~~----~~~~~~yd~~~l~----~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l 605 (996)
||++.++.. .....++++.++. .++||+|+|.||.+|.-. +. .....|+
T Consensus 146 lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~----------------------~~-~~~~~~~ 202 (256)
T cd06546 146 ITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS----------------------SP-SDYDAIV 202 (256)
T ss_pred EEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc----------------------CH-HHHHHHH
Confidence 998865431 1112356777665 499999999999765310 00 1233467
Q ss_pred HcCCCCCCeeecccc
Q psy13135 606 KQGAPKEKLMIGMPT 620 (996)
Q Consensus 606 ~~Gvp~~KLvLGlp~ 620 (996)
..|+|++||+||+|.
T Consensus 203 ~~~~~~~Kv~iGlpa 217 (256)
T cd06546 203 AQGWDPERIVIGLLT 217 (256)
T ss_pred HcCCCcccEEEEEec
Confidence 779999999999984
No 25
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.96 E-value=7.3e-30 Score=290.58 Aligned_cols=222 Identities=29% Similarity=0.624 Sum_probs=165.0
Q ss_pred ceEEEEEecccccccCCCccCCCCCCCCcceEEEEEEEEeeCCCeEeec-CCCccccccchhhHHHHHHHHhCCCceEEE
Q psy13135 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFE-SNDETKDGKVGLYERIEQLKKANPKLKTLL 175 (996)
Q Consensus 97 ~~~vCYy~~wa~~r~g~~~~~~~~i~~~lCTHiiy~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lK~~~p~lKvll 175 (996)
++|||||.+|+.+|++ .|.+++|+...||||+|+|+.++.+...... ......+.....++.+..+|+++|++||||
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 5899999999999987 8999999999999999999999976533221 001111234568999999999999999999
Q ss_pred EecCCCccc-----e------------ecc---c-ccCCcccccccccCCc----h------hhhhh----cC------C
Q psy13135 176 AIGKLSLEE-----L------------NGI---P-RANNAKDVDWAKVAGN----V------EVETV----TK------P 214 (996)
Q Consensus 176 avGG~~~~~-----~------------~~~---~-~~fDG~dldWeyP~~~----~------~~~~~----~~------~ 214 (996)
|||||..+. + +++ + |+|||+|||||+|... . .+++| +. .
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhcccccccce
Confidence 999995442 1 111 2 9999999999999764 2 12222 22 1
Q ss_pred C------c-------------c--ccceeeec-----ccCCCCC-CCCCCCCCCCCC---------------CCcceeEE
Q psy13135 215 A------P-------------I--KIDIFCYM-----TSWSQAR-PGAGKFGPENID---------------PKLCTHVI 252 (996)
Q Consensus 215 ~------~-------------i--~~d~i~~m-----~~w~~~~-~~apl~~~~~~~---------------~~~~~kl~ 252 (996)
. | + .||||+|| ++|+..+ |++||+....+. +...-||+
T Consensus 159 ~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p~~Kl~ 238 (343)
T PF00704_consen 159 YILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVPPSKLV 238 (343)
T ss_dssp SEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTSTGGGEE
T ss_pred eEEeeccccccccccccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhccccCChhhee
Confidence 1 1 1 19999999 6788877 999999776410 00111555
Q ss_pred ---------EeeCCh-------------------------hhhhHhh-hcCCeEEEcCCCceeeEEeC--CEEEEcCChh
Q psy13135 253 ---------YALSTP-------------------------RRVCEML-RNGAGYVWDDEMKVPYLVHG--DQWVGFDDEK 295 (996)
Q Consensus 253 ---------~~l~~~-------------------------~eiC~~~-~~~~~~~~d~~~~~py~~~~--~~Wv~ydd~~ 295 (996)
|++.+. .|+|..+ +.++...||+..++||.+.+ ++||+|||++
T Consensus 239 lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~i~~e~~~ 318 (343)
T PF00704_consen 239 LGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKHWISYEDPR 318 (343)
T ss_dssp EEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTEEEEE--HH
T ss_pred ecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCeEEEeCCHH
Confidence 333321 7899877 45688999999999999998 7999999999
Q ss_pred HHHHHHHHHHhcCCeeEEEEeccCC
Q psy13135 296 SIRYKMNWLKDNGYGGAMVWTVDMD 320 (996)
Q Consensus 296 s~~~K~~~~~~~~lgG~~~w~~d~D 320 (996)
|++.|++|++++||||+|+|+|++|
T Consensus 319 Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 319 SIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp HHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred HHHHHHHHHHhCCCCEEEEEecCCC
Confidence 9999999999999999999999988
No 26
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.96 E-value=3.2e-29 Score=270.01 Aligned_cols=201 Identities=16% Similarity=0.220 Sum_probs=145.1
Q ss_pred CCCCCCCCCC--CcEEEEEEEE-eeCC----eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCCCCCC-cchhhc
Q psy13135 396 FGPENIDPKL--CTHVIYAFGT-LKDH----KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGWAFGS-TPFKEL 467 (996)
Q Consensus 396 ~~~~~i~~~~--cTHIiyafa~-v~~~----~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~~~~s-~~fs~~ 467 (996)
..+++||.++ ||||||||+. .+.. +..+. ...+.+...++++..||+++|++|||||||||+.++ ..+...
T Consensus 13 ~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~ 91 (253)
T cd06544 13 VTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFN-PYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDP 91 (253)
T ss_pred ccccccCCCCCeeEEEEEEeeeecccccCCCCCccc-cccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCc
Confidence 3678999888 9999999994 3221 11111 111224456789999999999999999999999653 222233
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhc
Q psy13135 468 TGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA 547 (996)
Q Consensus 468 ~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~ 547 (996)
.+....|++||+++++||++|||||||||||||. .++.+|+.||++||++|++.+ +++.+++.+..... .
T Consensus 92 ~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~-------~lt~a~vap~~~~~-~ 161 (253)
T cd06544 92 SNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG-------VIKVASIAPSEDAE-Q 161 (253)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC-------CeEEEEecCCcccc-c
Confidence 3444556778999999999999999999999984 689999999999999998642 44444444433222 3
Q ss_pred CCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeccccceeee
Q psy13135 548 GYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSF 625 (996)
Q Consensus 548 ~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~ 625 (996)
.+.++.+.+++|+|++|+||+++.+... . ..........|. .++|++||++|+|++++.|
T Consensus 162 ~~y~~~~~~~~d~id~~~~qfy~~~~~~------------~-----~~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 162 SHYLALYNAYGDYIDYVNYQFYNYGVPT------------T-----VAKYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred cccHHHHHHhhCceeEEEhhhhCCCCCC------------C-----HHHHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 4558889999999999999999864311 0 001223344554 4699999999999998665
No 27
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=9.3e-28 Score=268.68 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=153.0
Q ss_pred eeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCe-eEeC-----CCcchhhhhHHHHHHHHHHhCCCceE
Q psy13135 377 IDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHK-LTLN-----EDKEKDEAGKFEALMQLREKNPDIKI 450 (996)
Q Consensus 377 ~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~-~~~~-----~~~~~~~~~~~~~~~~lk~~np~lKv 450 (996)
++++|||++|+.++++.. +..+. .++.||||+|+|+.+.++. ..+. .........+.+.+..+|++ ++||
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~-~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KV 76 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDD-VPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKV 76 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCccc-CCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEE
Confidence 478999999999886543 34444 4599999999999998532 2211 11111234566777777765 8999
Q ss_pred EEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc----cCHHHHHHHHHHHHHHHHhhhcc
Q psy13135 451 LLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA----DDRASYVNLLKELRLAFEGEAKT 526 (996)
Q Consensus 451 llSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~----~d~~~f~~llkeLr~~l~~~~~~ 526 (996)
|||||||.. +. .+++++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||++|.+
T Consensus 77 llSiGG~~~-~~----~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~---- 147 (312)
T cd02871 77 LISIGGANG-HV----DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP---- 147 (312)
T ss_pred EEEEeCCCC-cc----ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC----
Confidence 999999873 22 4778899999999999999999999999999998643 4779999999999998853
Q ss_pred cCCCceEEEEeecCchhh--------hhcCC--ChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCcccccccc
Q psy13135 527 SGEPRLLLTAAVPASFEA--------IAAGY--DVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT 596 (996)
Q Consensus 527 ~~~~~~~Lsvavp~~~~~--------~~~~y--d~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~ 596 (996)
+++||+|+.+.... ....| .+.++.+++||||||+||.++.+.. . +..... ...+
T Consensus 148 ----~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~----~-~~~~~~------~~~~ 212 (312)
T cd02871 148 ----NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGC----D-GQSYSQ------GTAD 212 (312)
T ss_pred ----CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcccc----c-ccCCcc------chhH
Confidence 48999996543211 11223 3678889999999999998765311 0 011000 1112
Q ss_pred HHHHHHHHHHcC-----------CCCCCeeeccccc
Q psy13135 597 VEYSAKEWVKQG-----------APKEKLMIGMPTY 621 (996)
Q Consensus 597 v~~~v~~~l~~G-----------vp~~KLvLGlp~Y 621 (996)
...++..++..| +|++||+||+|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 213 FLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 333333444455 8999999999964
No 28
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.95 E-value=4.2e-28 Score=266.01 Aligned_cols=239 Identities=31% Similarity=0.494 Sum_probs=185.7
Q ss_pred CceEEEEE--cC---CCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHH
Q psy13135 447 DIKILLAI--GG---WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFE 521 (996)
Q Consensus 447 ~lKvllSI--GG---~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~ 521 (996)
++|.++.+ ++ .+++++.++.++.++..++++++++++.++.+|+.|+.||+|.- .+.|++.|..|+|++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v-~~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENV-GPGDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhC-CHHHHHHHHHHHHHHHHHhc
Confidence 56666555 33 23445557899999999999999999999999999999999965 48899999999999999998
Q ss_pred hhhcccCCCceEEEEeecCchh-----hhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCcccccccc
Q psy13135 522 GEAKTSGEPRLLLTAAVPASFE-----AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT 596 (996)
Q Consensus 522 ~~~~~~~~~~~~Lsvavp~~~~-----~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~ 596 (996)
+.+ +.+++||++... .+...||+..+++++|||.||+||.|..| |.+.|.++..+.. -.
T Consensus 239 ~~G-------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g----G~PG~vA~i~~vr-----~~ 302 (423)
T COG3858 239 SGG-------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG----GPPGPVASIGWVR-----KV 302 (423)
T ss_pred cCC-------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC----CCCCcccCchhHh-----hh
Confidence 764 789999998642 24457899999999999999999999887 4555555544321 13
Q ss_pred HHHHHHHHHHcCCCCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCC
Q psy13135 597 VEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNE 676 (996)
Q Consensus 597 v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~ 676 (996)
+++++. -+|++||+||+|+||++|.+..... |. ..+ . ++..+-..+....++++.||..
T Consensus 303 ieya~T-----~iP~~Kv~mGip~YGYDW~~~y~~~---g~-----------~~~-a-~~~~~~i~ia~~y~A~Iq~D~~ 361 (423)
T COG3858 303 IEYALT-----VIPAEKVMMGIPLYGYDWTLPYDPL---GY-----------LAR-A-ISPDEAIDIANRYNATIQYDAT 361 (423)
T ss_pred hhhhhe-----ecchHHeEEccccccccccCCCCCC---cc-----------eee-e-cCcchhhhhhcccCCccCcCcc
Confidence 444443 4999999999999999998743210 00 001 1 3333433344556688999999
Q ss_pred CCcceEee----C-CeEEeecccchhhhhchhhhhcCCcceeeeeccCCCCC
Q psy13135 677 QQVPFAYK----D-DQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723 (996)
Q Consensus 677 ~~~py~~~----~-~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~s 723 (996)
+++||.|. + .++|||+|.+|+..|++++|++|+.|+.+|.|+.++.+
T Consensus 362 ~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 362 SQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred ccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 99997753 2 57999999999999999999999999999999998764
No 29
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.93 E-value=5.8e-26 Score=258.18 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=122.0
Q ss_pred ccccccccchhhhhhHHHhhhccccccccccCCCCC--ccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHH
Q psy13135 729 LTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEA 806 (996)
Q Consensus 729 lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~--~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~ 806 (996)
.+.++.+|++||+++++++++|||||||||||||.. ++|+++|+.||++||++|++.+ ++++||+++|+....
T Consensus 90 ~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~Lsvav~~~p~~ 164 (358)
T cd02875 90 QISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQISFDVAWSPSC 164 (358)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEecCccc
Confidence 478999999999999999999999999999999963 5789999999999999998653 468999999876544
Q ss_pred Hhc-CCChhhhhccccEEEccccccCCC-CCC--CcCCCCCCCccccccccccCCCCCcccchHHHHHHHHHcCCCCcce
Q psy13135 807 IAA-GYDVPEISKYLDFINVMTYDFHGQ-WER--QVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFE 882 (996)
Q Consensus 807 ~~~-~~d~~~l~~~vD~inlMtYD~~g~-w~~--~~g~~spl~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~gvP~~Ki 882 (996)
... .||+++|+++||||||||||+|++ |+. .+||+||+.++ +.+|+.|+..|||++||
T Consensus 165 ~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v------------------~~~v~~~~~~gvp~~KL 226 (358)
T cd02875 165 IDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQT------------------LSGYNNFTKLGIDPKKL 226 (358)
T ss_pred ccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhH------------------HHHHHHHHHcCCCHHHe
Confidence 433 499999999999999999999985 763 57888887654 48899999999999999
Q ss_pred eeccCCCCCcccc
Q psy13135 883 AIAAGYDVPEISK 895 (996)
Q Consensus 883 ~lgigy~~p~ygr 895 (996)
+||+ |+|||
T Consensus 227 vLGi----p~YGr 235 (358)
T cd02875 227 VMGL----PWYGY 235 (358)
T ss_pred EEEe----CCCCC
Confidence 9999 99998
No 30
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.93 E-value=4.9e-26 Score=256.16 Aligned_cols=148 Identities=17% Similarity=0.288 Sum_probs=126.9
Q ss_pred eccCCCCCCccccccccccccchhhhhhHHHhhhccccccccc-cCCCCC---ccChHHHHHHHHHHHHHHhhcccccCC
Q psy13135 716 SVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD-WEYPRG---ADDRASYVNLLKELRLAFEGEAKTSGE 791 (996)
Q Consensus 716 ~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiD-wE~p~~---~~d~~~~~~fl~elr~~l~~~~~~~~~ 791 (996)
++++.+. +.|+.+++++.+|++||+++++|+++||||||||| ||+|.. ++|+++|+.||+|||++|++.
T Consensus 74 ~~gg~~~-~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~------ 146 (318)
T cd02876 74 LFEGWSY-QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA------ 146 (318)
T ss_pred EECCCCH-HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc------
Confidence 4454433 35899999999999999999999999999999999 999954 369999999999999999853
Q ss_pred CceeEEEecCCCHHH-----HhcCCChhhhhccccEEEccccccCCCCCCCcCCCCCCCccccccccccCCCCCcccchH
Q psy13135 792 PRLLLTAAVPASFEA-----IAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQKK 866 (996)
Q Consensus 792 ~~~~lt~avp~~~~~-----~~~~~d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~~~~~~~p~~~~~~~~ 866 (996)
+++|++++|+.... +-..||+++|+++||||||||||+||+ ..+||+|||++..
T Consensus 147 -~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~~v~------------------ 205 (318)
T cd02876 147 -NLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLSWVR------------------ 205 (318)
T ss_pred -CCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcHHHH------------------
Confidence 36788888764321 224689999999999999999999998 7899999998764
Q ss_pred HHHHHHHHcC-CCCcceeeccCCCCCcccc
Q psy13135 867 LTVDLLLTAA-VPASFEAIAAGYDVPEISK 895 (996)
Q Consensus 867 ~~v~~~~~~g-vP~~Ki~lgigy~~p~ygr 895 (996)
.+|++++..| +|++||+||+ |+|||
T Consensus 206 ~~v~~~~~~~~vp~~KlvlGi----p~YG~ 231 (318)
T cd02876 206 SCLELLLPESGKKRAKILLGL----NFYGN 231 (318)
T ss_pred HHHHHHHhcCCCCHHHeEEec----ccccc
Confidence 8899999887 9999999999 99998
No 31
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.90 E-value=5.7e-24 Score=236.83 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=116.3
Q ss_pred ccccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCH
Q psy13135 725 PFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 804 (996)
Q Consensus 725 ~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~ 804 (996)
.|+.+++++.+|++||+++++++++|+|||||||||++ .++|+++|+.||++||++|++. +++||++||+..
T Consensus 78 ~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~-~~~d~~~~~~fl~eL~~~l~~~-------~~~lsv~v~~~~ 149 (298)
T cd06549 78 NIARLLADPSARAKFIANIAAYLERNQADGIVLDFEEL-PADDLPKYVAFLSELRRRLPAQ-------GKQLTVTVPADE 149 (298)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCC-ChhHHHHHHHHHHHHHHHhhhc-------CcEEEEEecCCC
Confidence 48899999999999999999999999999999999998 7889999999999999999853 479999999864
Q ss_pred HHHhcCCChhhhhccccEEEccccccCCCCCCCcCCCCCCCccccccccccCCCCCcccchHHHHHHHHHcCCCCcceee
Q psy13135 805 EAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAI 884 (996)
Q Consensus 805 ~~~~~~~d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~gvP~~Ki~l 884 (996)
..||+++|+++||+|+|||||+|++|+ .+||.+|+.+. +..+. ++..|+|++||+|
T Consensus 150 ----~~~d~~~l~~~~D~v~lMtYD~~~~~~-~~gp~a~~~~~------------------~~~~~-~~~~~vp~~Klvl 205 (298)
T cd06549 150 ----ADWNLKALARNADKLILMAYDEHYQGG-APGPIASQDWF------------------ESNLA-QAVKKLPPEKLIV 205 (298)
T ss_pred ----CCCCHHHHHHhCCEEEEEEeccCCCCC-CCCCCCChhhH------------------HHHHH-HHHhCCCHHHEEE
Confidence 358999999999999999999999864 34555554443 24454 4568899999999
Q ss_pred ccCCCCCcccc
Q psy13135 885 AAGYDVPEISK 895 (996)
Q Consensus 885 gigy~~p~ygr 895 (996)
|+ |+|||
T Consensus 206 Gi----p~YG~ 212 (298)
T cd06549 206 AL----GSYGY 212 (298)
T ss_pred Ee----cccCc
Confidence 99 99998
No 32
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.90 E-value=4.4e-24 Score=240.02 Aligned_cols=161 Identities=20% Similarity=0.323 Sum_probs=129.4
Q ss_pred chhhhhcCCcceeeeeccCCC---C-CCccccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHH
Q psy13135 701 MDWLKEDGYGGIMIWSVDMDD---L-STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLK 776 (996)
Q Consensus 701 ~~~~k~~~lgGi~vW~l~~Dd---~-sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~ 776 (996)
+..++++++.-+ -+++.++ + +..|+.+++++.+|++||+++++++++|+|||||||||++ .++++++|+.||+
T Consensus 51 ~~~a~~~~~kv~--~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~-~~~d~~~~~~fl~ 127 (313)
T cd02874 51 IEAAKRRGVKPL--LVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENV-PPEDREAYTQFLR 127 (313)
T ss_pred HHHHHHCCCeEE--EEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccC-CHHHHHHHHHHHH
Confidence 344556655443 2444433 2 2356888999999999999999999999999999999998 6789999999999
Q ss_pred HHHHHHhhcccccCCCceeEEEecCCCHH-----HHhcCCChhhhhccccEEEccccccCCCCCCCcCCCCCCCcccccc
Q psy13135 777 ELRLAFEGEAKTSGEPRLLLTAAVPASFE-----AIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLL 851 (996)
Q Consensus 777 elr~~l~~~~~~~~~~~~~lt~avp~~~~-----~~~~~~d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~ 851 (996)
+||.+|++. +++|++++++... .+...||+++|+++||||||||||+||+|+ .+||+||+.+.+
T Consensus 128 ~lr~~l~~~-------~~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~~~~~~--- 196 (313)
T cd02874 128 ELSDRLHPA-------GYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAPIGWVE--- 196 (313)
T ss_pred HHHHHhhhc-------CcEEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCC-CCCccCChHHHH---
Confidence 999999743 4788888776432 233579999999999999999999999974 678988887653
Q ss_pred ccccCCCCCcccchHHHHHHHHHcCCCCcceeeccCCCCCcccc
Q psy13135 852 ITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEISK 895 (996)
Q Consensus 852 ~~~~~~p~~~~~~~~~~v~~~~~~gvP~~Ki~lgigy~~p~ygr 895 (996)
..++ ++.+|+|++||+||+ |+|||
T Consensus 197 ---------------~~~~-~~~~gvp~~KlvlGi----p~YG~ 220 (313)
T cd02874 197 ---------------RVLQ-YAVTQIPREKILLGI----PLYGY 220 (313)
T ss_pred ---------------HHHH-HHHhcCCHHHEEEee----ccccc
Confidence 4444 555899999999999 99998
No 33
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.90 E-value=1.1e-23 Score=229.59 Aligned_cols=162 Identities=21% Similarity=0.285 Sum_probs=128.4
Q ss_pred hhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHH
Q psy13135 702 DWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLA 781 (996)
Q Consensus 702 ~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~ 781 (996)
..+++.++. .+-+++++..+ .|..++.++.+|++||+++++++++|+|||||||||+|... +++|+.|+++||++
T Consensus 53 ~~~~~~~~k--vl~sigg~~~~-~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~ 127 (253)
T cd06545 53 NAAHAHNVK--ILISLAGGSPP-EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHhCCCE--EEEEEcCCCCC-cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHH
Confidence 344444432 23456655443 35668899999999999999999999999999999999533 89999999999999
Q ss_pred HhhcccccCCCceeEEEecCCCHHHHhcCCChhhhhccccEEEccccccCCCCCC-CcCCCCCCCccccccccccCCCCC
Q psy13135 782 FEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER-QVGHNSPLKPLEVLLITTLSIPGA 860 (996)
Q Consensus 782 l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~~~l~~~vD~inlMtYD~~g~w~~-~~g~~spl~~~~~~~~~~~~~p~~ 860 (996)
|++. +++||+++++... .+...++.++||||||||||+||+|.. .+||+||+.+.
T Consensus 128 l~~~-------~~~lt~av~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~------------- 183 (253)
T cd06545 128 LKKE-------GKLLTAAVSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDA------------- 183 (253)
T ss_pred Hhhc-------CcEEEEEccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhH-------------
Confidence 9743 4689999987542 223467889999999999999999964 57888887654
Q ss_pred cccchHHHHHHHHHcCC-CCcceeeccCCCCCcccccccccc
Q psy13135 861 TSYQKKLTVDLLLTAAV-PASFEAIAAGYDVPEISKYLDFIN 901 (996)
Q Consensus 861 ~~~~~~~~v~~~~~~gv-P~~Ki~lgigy~~p~ygr~~~~~~ 901 (996)
+.+++.|+..|+ |++||+||+ |+|||-+.+.+
T Consensus 184 -----~~~v~~~~~~g~ip~~KlvlGl----p~YG~~w~~~~ 216 (253)
T cd06545 184 -----VNDLNYWNERGLASKDKLVLGL----PFYGYGFYYNG 216 (253)
T ss_pred -----HHHHHHHHHcCCCCHHHEEEEe----CCccccccCCC
Confidence 378999999998 999999999 99998554433
No 34
>KOG2091|consensus
Probab=99.87 E-value=7.1e-22 Score=206.74 Aligned_cols=289 Identities=21% Similarity=0.343 Sum_probs=216.8
Q ss_pred ceeEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCC--eeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEE
Q psy13135 376 KIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDH--KLTLNEDKEKDEAGKFEALMQLREKNPDIKILLA 453 (996)
Q Consensus 376 ~~~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~--~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllS 453 (996)
+..+++|.+.|+.. -|....|-.+++|||...|+.+... .+.+.+. -+.+++ .+.++|+++++++++.=
T Consensus 78 ~~~vLayVTPWNs~-----Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~-hdid~g---wiralRk~~~~l~ivPR 148 (392)
T KOG2091|consen 78 GGTVLAYVTPWNSH-----GYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGK-HDIDPG---WIRALRKSGKDLHIVPR 148 (392)
T ss_pred CCceEEEecCcCcc-----chhHHHHHhcccceecchheeehhcCcceEEeec-ccCChH---HHHHHHHhCCCceeece
Confidence 45899999999974 4889999999999999999988632 2333322 223444 45578899999998743
Q ss_pred --EcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCC--CCccCHHHHHHHHHHHHHHHHhhhcccCC
Q psy13135 454 --IGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGADDRASYVNLLKELRLAFEGEAKTSGE 529 (996)
Q Consensus 454 --IGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P--~~~~d~~~f~~llkeLr~~l~~~~~~~~~ 529 (996)
+-.|+ +..+..++.+++.|++..+.+++++++++|||+.|+--.. ....+ .....|++.|.++|++.
T Consensus 149 ~~fd~~~--~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d-~~al~~v~hl~k~Lhkq------ 219 (392)
T KOG2091|consen 149 FYFDEFT--SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIAD-KDALELVEHLGKALHKQ------ 219 (392)
T ss_pred ehhhhcc--chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHh------
Confidence 34444 6789999999999999999999999999999999975311 01123 23456778888888754
Q ss_pred CceEEEEeecCchhhhh------cCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHH
Q psy13135 530 PRLLLTAAVPASFEAIA------AGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKE 603 (996)
Q Consensus 530 ~~~~Lsvavp~~~~~~~------~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~ 603 (996)
++.+..++|+..+.-. ..-++..|...+|.+.+|||||.+. ..+|+++|+. .++.++..
T Consensus 220 -~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~------------wi~~~l~~ 284 (392)
T KOG2091|consen 220 -ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLE------------WIRHCLHH 284 (392)
T ss_pred -heEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCHH------------HHHHHHHH
Confidence 3677777777322111 1225788999999999999999874 4567788775 56666666
Q ss_pred HHHcCCCCCCeeeccccceeeeEecCCCCCCCCCCCCCCCCCCcccccCcceeehhhhccccCCCceEEEcCCCCcc-eE
Q psy13135 604 WVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVP-FA 682 (996)
Q Consensus 604 ~l~~Gvp~~KLvLGlp~YG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~G~lsy~ei~~~l~~~~~~~~wD~~~~~p-y~ 682 (996)
..-...-+.||.+||.|||..|.+.+ -.+.++.....++++.......||+++++. +.
T Consensus 285 l~~~s~~r~KiLlGlNFYG~d~~~gd---------------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~ 343 (392)
T KOG2091|consen 285 LGGSSAKRPKILLGLNFYGNDFNLGD---------------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFE 343 (392)
T ss_pred hCCccccccceeEeeeccccccccCC---------------------CCCceeHHHHHHHHhccCcceeeccccchhhee
Confidence 43333446899999999999997521 013366667788888889999999999997 45
Q ss_pred ee----CCeEEeecccchhhhhchhhhhcCCcceeeeeccC
Q psy13135 683 YK----DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDM 719 (996)
Q Consensus 683 ~~----~~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~ 719 (996)
|+ +++-|.|.+..||..+++.+++.|. ||.+|.+|+
T Consensus 344 ~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~Gq 383 (392)
T KOG2091|consen 344 YKRNDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQ 383 (392)
T ss_pred eeccCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccC
Confidence 65 3688999999999999999999998 889999985
No 35
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.85 E-value=2.6e-20 Score=203.41 Aligned_cols=200 Identities=20% Similarity=0.177 Sum_probs=140.9
Q ss_pred eEEEEecccCCcCCCCCCCCCCCCCCCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHHHHhCCCceEEEEEcCC
Q psy13135 378 DIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQLREKNPDIKILLAIGGW 457 (996)
Q Consensus 378 ~vvcYy~~W~~~r~~~~~~~~~~i~~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~lk~~np~lKvllSIGG~ 457 (996)
+.+|||.+|+... ......+.++| +.+++|+..++.++...... .........+.+..++++ ++|||+|||||
T Consensus 2 ~~~~y~~~~~~~~-~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~---~~~~~~~~~~~i~~l~~k--G~KVl~sigg~ 74 (255)
T cd06542 2 ISFGYFEVWDDKG-ASLQESLLNLP-DSVDMVSLFAANINLDAATA---VQFLLTNKETYIRPLQAK--GTKVLLSILGN 74 (255)
T ss_pred eEEEEEEecCCcC-cccccccccCC-CcceEEEEcccccCcccccc---hhhhhHHHHHHHHHHhhC--CCEEEEEECCC
Confidence 5789999998643 22344566776 67888887443333221100 000122334555566555 89999999998
Q ss_pred CCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC------ccCHHHHHHHHHHHHHHHHhhhcccCCCc
Q psy13135 458 AFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG------ADDRASYVNLLKELRLAFEGEAKTSGEPR 531 (996)
Q Consensus 458 ~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~------~~d~~~f~~llkeLr~~l~~~~~~~~~~~ 531 (996)
..+ ..| ....+++.|++|++++++++++|||||||||||+|.. ..+..+|..||++||++|.+. +
T Consensus 75 ~~~-~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~-------~ 145 (255)
T cd06542 75 HLG-AGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPT-------D 145 (255)
T ss_pred CCC-CCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcC-------C
Confidence 853 344 3456788999999999999999999999999999864 247899999999999999642 3
Q ss_pred eEEEEeecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCC
Q psy13135 532 LLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPK 611 (996)
Q Consensus 532 ~~Lsvavp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~ 611 (996)
++|++++++..... +.+++.+++||+++|+||-++. ..+. .. .-...|+|+
T Consensus 146 kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~---~~-------------------~~~~~g~~~ 196 (255)
T cd06542 146 KLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR---NW-------------------NTNSPKIPP 196 (255)
T ss_pred cEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCc---cCCc---cc-------------------ccccCCCCH
Confidence 68999888754321 6789999999999999985432 1100 00 011358999
Q ss_pred CCeeeccccce
Q psy13135 612 EKLMIGMPTYG 622 (996)
Q Consensus 612 ~KLvLGlp~YG 622 (996)
+|+++|+++++
T Consensus 197 ~k~i~~~~~~~ 207 (255)
T cd06542 197 EKMVYTESFEE 207 (255)
T ss_pred HHceeeeeeec
Confidence 99999999885
No 36
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.79 E-value=2.6e-18 Score=187.96 Aligned_cols=185 Identities=21% Similarity=0.245 Sum_probs=124.6
Q ss_pred CCCCCcEEEEEEEEeeCC----eeEeCCCcch----hhhhHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHH
Q psy13135 402 DPKLCTHVIYAFGTLKDH----KLTLNEDKEK----DEAGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFR 473 (996)
Q Consensus 402 ~~~~cTHIiyafa~v~~~----~~~~~~~~~~----~~~~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~ 473 (996)
+...++-|+.+|+..-++ .+.+.+.-.. .-..+.+.+..++++ ++|||||||||+. +..| ++++.
T Consensus 21 ~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIGG~~~-~~~~----~s~~~ 93 (280)
T cd02877 21 DTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIGGAGG-SYSL----SSDAD 93 (280)
T ss_pred CCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEccCCCC-CcCC----CCHHH
Confidence 445688899999877643 1222111111 012456667766654 9999999999984 4333 78889
Q ss_pred HHHHHHHHHHHHH------------hCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCc
Q psy13135 474 MNQFVYESIEFLR------------EHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPAS 541 (996)
Q Consensus 474 r~~fi~siv~~l~------------~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~ 541 (996)
|+.|++++.++.. +++|||||||||+|.. .+|..|+++||+.+.+.. .++++||+|.++.
T Consensus 94 a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~----~~~~~LTaAPq~~ 165 (280)
T cd02877 94 AKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDP----SKKYYLTAAPQCP 165 (280)
T ss_pred HHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhccc----CCceEEEeccccC
Confidence 9999999988752 5679999999999863 689999999999997532 1358999997764
Q ss_pred hhhhhcCCChhhhhc-cccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCC---CCeeec
Q psy13135 542 FEAIAAGYDVPEISK-YLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPK---EKLMIG 617 (996)
Q Consensus 542 ~~~~~~~yd~~~l~~-~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~---~KLvLG 617 (996)
.. ..+....|.. ++|||+||+||..+- ... . . .........+.|... ++. .||+||
T Consensus 166 ~~---d~~~~~~i~~~~~D~i~vqfYn~~~c-------~~~-~---~-----~~~~~~~~~~~w~~~-~~~~~~~kv~lG 225 (280)
T cd02877 166 YP---DASLGDAIATGLFDFIFVQFYNNPCC-------SYA-S---G-----NASGFNFNWDTWTSW-AKATSNAKVFLG 225 (280)
T ss_pred Cc---chhHHHHHccCccCEEEEEEecCccc-------ccc-c---c-----ccchhhhHHHHHHHh-cccCCCceEEEe
Confidence 22 2244455654 999999999995321 000 0 0 011223455667765 555 899999
Q ss_pred cccc
Q psy13135 618 MPTY 621 (996)
Q Consensus 618 lp~Y 621 (996)
||..
T Consensus 226 lpas 229 (280)
T cd02877 226 LPAS 229 (280)
T ss_pred cccC
Confidence 9955
No 37
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.79 E-value=3.1e-19 Score=196.53 Aligned_cols=138 Identities=23% Similarity=0.354 Sum_probs=120.1
Q ss_pred cccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHH
Q psy13135 726 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFE 805 (996)
Q Consensus 726 f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~ 805 (996)
++.++.++..|+++|+++++.++++|+.||+||||.. .+.|++.|+.|+|++|++|++ .++.+|+||||+..
T Consensus 182 a~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v-~~~DR~~yt~flR~~r~~l~~-------~G~~~siAvaakt~ 253 (423)
T COG3858 182 AQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENV-GPGDRELYTDFLRQVRDALHS-------GGYTVSIAVAAKTS 253 (423)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhC-CHHHHHHHHHHHHHHHHHhcc-------CCeEEEEEecCCCC
Confidence 4788999999999999999999999999999999988 899999999999999999984 45999999999763
Q ss_pred H-----HhcCCChhhhhccccEEEccccccCCCCCCCcCCCCCCCccccccccccCCCCCcccchHHHHHHHHHcCCCCc
Q psy13135 806 A-----IAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPAS 880 (996)
Q Consensus 806 ~-----~~~~~d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~gvP~~ 880 (996)
. |-..||+.++++++|||.|||||.|++| ..+|+.||+.|++ ..+ .|...-+|++
T Consensus 254 ~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~~vr------------------~~i-eya~T~iP~~ 313 (423)
T COG3858 254 DLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG-GPPGPVASIGWVR------------------KVI-EYALTVIPAE 313 (423)
T ss_pred CCcCccccchhhhhhhceeeeEEEEEEeccCcCC-CCCCcccCchhHh------------------hhh-hhhheecchH
Confidence 3 3357999999999999999999999998 5577777777763 444 4555579999
Q ss_pred ceeeccCCCCCcccc
Q psy13135 881 FEAIAAGYDVPEISK 895 (996)
Q Consensus 881 Ki~lgigy~~p~ygr 895 (996)
||+||+ |+||+
T Consensus 314 Kv~mGi----p~YGY 324 (423)
T COG3858 314 KVMMGI----PLYGY 324 (423)
T ss_pred HeEEcc----ccccc
Confidence 999999 88884
No 38
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.73 E-value=2.2e-17 Score=181.94 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=117.3
Q ss_pred CCCCcEEEEEEEEeeCC-eeEeCCCcch-hhhhHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHH
Q psy13135 403 PKLCTHVIYAFGTLKDH-KLTLNEDKEK-DEAGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYE 480 (996)
Q Consensus 403 ~~~cTHIiyafa~v~~~-~~~~~~~~~~-~~~~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~s 480 (996)
...|+||++||+...++ +......... ......+.+..||++ ++||+||||||.. +. +..+...|++|+++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g-~~----~~~~~~~~~~~~~a 95 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG-TP----LATSCTSADQLAAA 95 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC-Cc----cccCcccHHHHHHH
Confidence 36799999999988743 3222221111 134567788899987 6899999999983 22 33367789999999
Q ss_pred HHHHHHhCCcceEEEeeeCCCCccC---HHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhh-cCCChhhhhc
Q psy13135 481 SIEFLREHKFNGLDVDWEYPRGADD---RASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIA-AGYDVPEISK 556 (996)
Q Consensus 481 iv~~l~~ygfDGIDIDwE~P~~~~d---~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~-~~yd~~~l~~ 556 (996)
+.+++++|+|||||||||+|. ..+ .+++..+|++|++++ +.+.|++++|..+..+. .++++.+.++
T Consensus 96 ~~~~i~~y~~dgiDfDiE~~~-~~d~~~~~~~~~al~~Lq~~~---------p~l~vs~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEGGA-LTDTAAIDRRAQALALLQKEY---------PDLKISFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred HHHHHHHhCCCeEEEeccCCc-cccchhHHHHHHHHHHHHHHC---------CCcEEEEecCCCCCCCChhHHHHHHHHH
Confidence 999999999999999999986 444 378888889888776 24789999988765554 5677888888
Q ss_pred ----cccEEEEeeccCCCC
Q psy13135 557 ----YLDFINVMTYDFHGQ 571 (996)
Q Consensus 557 ----~vD~vnvMtYD~~g~ 571 (996)
.+|+||||+|||++.
T Consensus 166 ~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 166 ANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HcCCCcceeeeeeecCCCC
Confidence 899999999999864
No 39
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=5.1e-16 Score=158.58 Aligned_cols=231 Identities=21% Similarity=0.293 Sum_probs=145.6
Q ss_pred ccccCCCCcceeEEEEecccCCcCCC-CCCCCCCCCC----CCCCcEEEEEEEEeeCCeeEeCCCcchhhhhHHHHHHHH
Q psy13135 367 ETVTKPAPIKIDIFCYMTSWSQARPG-AGKFGPENID----PKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEALMQL 441 (996)
Q Consensus 367 ~~~~~p~p~~~~vvcYy~~W~~~r~~-~~~~~~~~i~----~~~cTHIiyafa~v~~~~~~~~~~~~~~~~~~~~~~~~l 441 (996)
..+..|.+.++++||||++|...... ...-...+|. +..++.+..+|..-.+ .+-..-...+.+.++..++.+|
T Consensus 16 aasvm~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g-~iptf~P~~~~daeFr~~v~aL 94 (332)
T COG3469 16 AASVMPDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAG-DIPTFKPYNDPDAEFRAQVGAL 94 (332)
T ss_pred hHhhccccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCC-CCcccCcCCCCHHHHHHHHHHh
Confidence 34456677777999999999753211 1111223332 2445666667754443 2222222223466777888888
Q ss_pred HHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC--ccCHHHHHHHHHHHHHH
Q psy13135 442 REKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--ADDRASYVNLLKELRLA 519 (996)
Q Consensus 442 k~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~--~~d~~~f~~llkeLr~~ 519 (996)
.++ +.-|+||+||.. +. -.+ +....+.|+++|+.++++|||||+|||.|.... .+.......++|.+|+.
T Consensus 95 nae--GkavllsLGGAd-gh---IeL--~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~h 166 (332)
T COG3469 95 NAE--GKAVLLSLGGAD-GH---IEL--KAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDH 166 (332)
T ss_pred hcc--CcEEEEEccCcc-ce---EEe--ccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHH
Confidence 776 788999999965 22 112 222368999999999999999999999995431 34445778899999998
Q ss_pred HHhhhcccCCCceEEEEeecCchhhhhcCC--ChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccH
Q psy13135 520 FEGEAKTSGEPRLLLTAAVPASFEAIAAGY--DVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTV 597 (996)
Q Consensus 520 l~~~~~~~~~~~~~Lsvavp~~~~~~~~~y--d~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v 597 (996)
.+..++ +++||++.-.+.-.-...| -+.+|..+.|||+++-|+.-|.-...+..++++... ...+
T Consensus 167 yk~~Gk-----~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~--------nd~~ 233 (332)
T COG3469 167 YKNQGK-----NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQN--------NDMV 233 (332)
T ss_pred HHhcCC-----ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccc--------cHHH
Confidence 887764 6899998655422211223 367899999999999999776533333344444321 1122
Q ss_pred HHHHHHHHH----------cCCCCCCeeeccc
Q psy13135 598 EYSAKEWVK----------QGAPKEKLMIGMP 619 (996)
Q Consensus 598 ~~~v~~~l~----------~Gvp~~KLvLGlp 619 (996)
....-+++. ..+|.+|+++|+|
T Consensus 234 kesfly~~~~slanGtr~f~~ipa~k~aiGLP 265 (332)
T COG3469 234 KESFLYYLTFSLANGTRGFEKIPADKFAIGLP 265 (332)
T ss_pred HHhHHHHhhhhhhcCcccceecccceeEEecC
Confidence 233223321 1378999999998
No 40
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.68 E-value=7.3e-17 Score=175.33 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=74.5
Q ss_pred eEEEEEecccccccCCCccCCC-CCCCCcceEEEEEEEEeeCCCeEeecCCCcccc--ccchhhHHHHHHHHhCCCceEE
Q psy13135 98 RVVCYYTNWSQYRTKIGKFQPE-DIEPDLCTHIIFAFGWLKKGKLSSFESNDETKD--GKVGLYERIEQLKKANPKLKTL 174 (996)
Q Consensus 98 ~~vCYy~~wa~~r~g~~~~~~~-~i~~~lCTHiiy~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lK~~~p~lKvl 174 (996)
|+||||++|..++++.....|+ .++...||||||+|+.++.++...+. +.+.+ ....+++.|..+|+ |++|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~--d~~~~~~~~~~~~~~i~~~~~--~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLN--DHPPDHPRFTTLWTELAILQS--SGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEEC--CCCCCcchhhHHHHHHHHHHh--CCCEEE
Confidence 6899999998887765554444 66788999999999999875432222 22211 11246777877774 689999
Q ss_pred EEecCCCcc---ce------------eccc----ccCCcccccccccCCc
Q psy13135 175 LAIGKLSLE---EL------------NGIP----RANNAKDVDWAKVAGN 205 (996)
Q Consensus 175 lavGG~~~~---~~------------~~~~----~~fDG~dldWeyP~~~ 205 (996)
||||||..+ .| ++++ |+|||+|||||||...
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~ 126 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSL 126 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCH
Confidence 999999755 22 1121 9999999999999754
No 41
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.64 E-value=7.4e-16 Score=166.48 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=91.2
Q ss_pred cccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCCh
Q psy13135 734 FRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDV 813 (996)
Q Consensus 734 ~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~ 813 (996)
..|++||+|+++||++||||||||||||| +.|+++|+.||++||++|++. ++++.+++.+..... ..+.+
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~~--~~d~~~f~~ll~~l~~~l~~~-------~~lt~a~vap~~~~~-~~~y~ 165 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEHF--PADPDTFVECIGQLITELKNN-------GVIKVASIAPSEDAE-QSHYL 165 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeecccC--CcCHHHHHHHHHHHHHHhhhc-------CCeEEEEecCCcccc-ccccH
Confidence 34566799999999999999999999999 578999999999999999753 245555555543332 34558
Q ss_pred hhhhccccEEEccccccCCCCCCCcCCCCCCCccccccccccCCCCCcccchHHHHHHHHHcCCCCcceeeccCCCCCcc
Q psy13135 814 PEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEI 893 (996)
Q Consensus 814 ~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~gvP~~Ki~lgigy~~p~y 893 (996)
+.+.+++|+|++|+||+++.+... .. ..+ ....+.+ ..++|++||++|+ |.+
T Consensus 166 ~~~~~~~d~id~~~~qfy~~~~~~--------~~-------------~~~--~~~~~~~-~~~~p~~Kv~lGl----~a~ 217 (253)
T cd06544 166 ALYNAYGDYIDYVNYQFYNYGVPT--------TV-------------AKY--VEFYDEV-ANNYPGKKVLASF----STD 217 (253)
T ss_pred HHHHHhhCceeEEEhhhhCCCCCC--------CH-------------HHH--HHHHHHH-HhCCCcccEEEEE----ecC
Confidence 889999999999999999875210 00 001 1222223 3579999999999 777
Q ss_pred cc
Q psy13135 894 SK 895 (996)
Q Consensus 894 gr 895 (996)
++
T Consensus 218 ~~ 219 (253)
T cd06544 218 GE 219 (253)
T ss_pred CC
Confidence 64
No 42
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.63 E-value=6.2e-16 Score=163.70 Aligned_cols=123 Identities=41% Similarity=0.685 Sum_probs=99.3
Q ss_pred hhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCcc--ChHHHHHHHH
Q psy13135 699 MKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGAD--DRASYVNLLK 776 (996)
Q Consensus 699 ~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~--d~~~~~~fl~ 776 (996)
..++.+++..-|--.+-++++......+ .+++++..|++|++++++++++|+|||||||||+|.... ++++|+.||+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 3444455442233344566666555444 778999999999999999999999999999999995443 5999999999
Q ss_pred HHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCChhhhhccccEEEccccc
Q psy13135 777 ELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829 (996)
Q Consensus 777 elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~~~l~~~vD~inlMtYD 829 (996)
+||++|++. +++||+++|+........|+++++.+++||||+|+||
T Consensus 132 ~lr~~l~~~-------~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 132 ELRSALGAA-------NYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred HHHHHhccc-------CcEEEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 999999642 5899999999877654459999999999999999999
No 43
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.55 E-value=1e-14 Score=163.57 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=95.3
Q ss_pred chhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCc----cChHH
Q psy13135 695 RSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA----DDRAS 770 (996)
Q Consensus 695 ~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~----~d~~~ 770 (996)
..+...++.++++|+ ..+.++|+...+. .+.++..|++|++++++++++|+|||||||||+|... +++++
T Consensus 60 ~~~~~~i~~~q~~G~--KVllSiGG~~~~~----~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~ 133 (312)
T cd02871 60 AEFKADIKALQAKGK--KVLISIGGANGHV----DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITN 133 (312)
T ss_pred HHHHHHHHHHHHCCC--EEEEEEeCCCCcc----ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHH
Confidence 345666667776654 4456788765432 2677789999999999999999999999999999543 48899
Q ss_pred HHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHH--------HhcCC--ChhhhhccccEEEccccccCCCC
Q psy13135 771 YVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEA--------IAAGY--DVPEISKYLDFINVMTYDFHGQW 834 (996)
Q Consensus 771 ~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~--------~~~~~--d~~~l~~~vD~inlMtYD~~g~w 834 (996)
|+.|||+||++|. ++++||+|..+.... ....| .++++.+++||||+|+||.++.+
T Consensus 134 ~~~~lk~lr~~~~--------~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~ 199 (312)
T cd02871 134 LISALKQLKDHYG--------PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG 199 (312)
T ss_pred HHHHHHHHHHHcC--------CCeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc
Confidence 9999999999984 368999996432111 11223 37788899999999999998754
No 44
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.49 E-value=3.3e-14 Score=155.35 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=89.8
Q ss_pred hhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCC------ccChHHHHHHHH
Q psy13135 703 WLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG------ADDRASYVNLLK 776 (996)
Q Consensus 703 ~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~------~~d~~~~~~fl~ 776 (996)
.++++|+ -.+.+++++.....| ....+++.|++|++++++++++|||||||||||++.. +.++++|+.|++
T Consensus 59 ~l~~kG~--KVl~sigg~~~~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~ 135 (255)
T cd06542 59 PLQAKGT--KVLLSILGNHLGAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIK 135 (255)
T ss_pred HHhhCCC--EEEEEECCCCCCCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHH
Confidence 3444444 233467776655554 2245667899999999999999999999999999964 248899999999
Q ss_pred HHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCChhhhhccccEEEccccccCC
Q psy13135 777 ELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 832 (996)
Q Consensus 777 elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~~~l~~~vD~inlMtYD~~g 832 (996)
+||++|.+ .+++|++++++..... +.+++.+++||+++|+||.++
T Consensus 136 ~Lr~~~~~-------~~kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~ 180 (255)
T cd06542 136 ELRKYMGP-------TDKLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSS 180 (255)
T ss_pred HHHHHhCc-------CCcEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCC
Confidence 99999952 3579999988754322 789999999999999998643
No 45
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.26 E-value=6.7e-12 Score=138.69 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=93.4
Q ss_pred hhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCccCh---HHHH
Q psy13135 696 SLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDR---ASYV 772 (996)
Q Consensus 696 Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~---~~~~ 772 (996)
.+...+..+|+.| |-.+-++|+..... | ......|++|++++.+++++|+|||||||||++. .+|+ +++.
T Consensus 55 ~~~~~i~~lk~~G--~kViiS~GG~~g~~-~---~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-~~d~~~~~~~~ 127 (294)
T cd06543 55 WIKSDIAALRAAG--GDVIVSFGGASGTP-L---ATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-LTDTAAIDRRA 127 (294)
T ss_pred hHHHHHHHHHHcC--CeEEEEecCCCCCc-c---ccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-cccchhHHHHH
Confidence 3455666777776 44556888765432 3 3355679999999999999999999999999984 5554 7888
Q ss_pred HHHHHHHHHHhhcccccCCCceeEEEecCCCHHHHh-cCCChhhhhc----cccEEEccccccCCC
Q psy13135 773 NLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIA-AGYDVPEISK----YLDFINVMTYDFHGQ 833 (996)
Q Consensus 773 ~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~-~~~d~~~l~~----~vD~inlMtYD~~g~ 833 (996)
..|++|++++ +.+.|++++|..+..+. .++++-+.++ .+|+||||||||+++
T Consensus 128 ~al~~Lq~~~---------p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 128 QALALLQKEY---------PDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHHHHHC---------CCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeeeeecCCCC
Confidence 8888888776 35789999887554443 4567888888 999999999999874
No 46
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.21 E-value=4e-11 Score=131.64 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=88.9
Q ss_pred hhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHh------------hhccccccccccCCCC
Q psy13135 696 SLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFL------------REHKFNGLDVDWEYPR 763 (996)
Q Consensus 696 Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l------------~~~~~DGvdiDwE~p~ 763 (996)
.+.+-++..+..|+. .+.+||+...+.. ..+.+.|+.|++++.+++ .+++|||||||||+|.
T Consensus 60 ~~~~dI~~cq~~G~K--VlLSIGG~~~~~~----~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~ 133 (280)
T cd02877 60 QLGADIKHCQSKGKK--VLLSIGGAGGSYS----LSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGS 133 (280)
T ss_pred hHHHHHHHHHHCCCE--EEEEccCCCCCcC----CCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCC
Confidence 566677777777653 3468888766545 367788999999998765 2678999999999994
Q ss_pred CccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCChhhhhc-cccEEEccccccC
Q psy13135 764 GADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISK-YLDFINVMTYDFH 831 (996)
Q Consensus 764 ~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~~~l~~-~vD~inlMtYD~~ 831 (996)
. .+|..|+++||+.+++.. .++++||+|.++... ..+....|.. ++||||||+||..
T Consensus 134 ~----~~~~~l~~~LR~~~~~~~----~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~ 191 (280)
T cd02877 134 P----ENYDALAKRLRSLFASDP----SKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNP 191 (280)
T ss_pred c----cCHHHHHHHHHHHhhccc----CCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCc
Confidence 3 689999999999997532 357999999665321 2244455654 9999999999963
No 47
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=98.87 E-value=9.3e-10 Score=89.57 Aligned_cols=47 Identities=34% Similarity=0.815 Sum_probs=36.0
Q ss_pred ccCCCCCCCcceeEcCCCeeeeccCCCCccccCCCCccCCCCCCCCC
Q psy13135 939 SYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETC 985 (996)
Q Consensus 939 ~~~p~~~~C~~fy~C~~g~~~~~~Cp~gl~fn~~~~~Cd~p~~v~~C 985 (996)
++++++.+|++||+|.+|.+++++||+||+||+..+.|+++++|..|
T Consensus 7 ~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 7 GFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp EEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred eeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 68899999999999999999999999999999999999999995456
No 48
>KOG2091|consensus
Probab=98.84 E-value=1.5e-09 Score=115.03 Aligned_cols=145 Identities=19% Similarity=0.271 Sum_probs=106.7
Q ss_pred eeeccCCCCCC-ccccccccccccchhhhhhHHHhhhccccccccc-cCCCCC-ccChHHHHHHHHHHHHHHhhcccccC
Q psy13135 714 IWSVDMDDLST-PFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD-WEYPRG-ADDRASYVNLLKELRLAFEGEAKTSG 790 (996)
Q Consensus 714 vW~l~~Dd~sg-~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiD-wE~p~~-~~d~~~~~~fl~elr~~l~~~~~~~~ 790 (996)
+=.+-+|++.+ .|++++.++.-|++.++-+++++++++|||+-|+ |....+ -.| .-...|++.|-++|+++
T Consensus 146 vPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d-~~al~~v~hl~k~Lhkq----- 219 (392)
T KOG2091|consen 146 VPRFYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIAD-KDALELVEHLGKALHKQ----- 219 (392)
T ss_pred eceehhhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHh-----
Confidence 34555677755 5778899999999999999999999999999999 764422 233 33445788888888843
Q ss_pred CCceeEEEecCCCHHHHhc------CCChhhhhccccEEEccccccCCCCCCCcCCCCCCCccccccccccCCCCCcccc
Q psy13135 791 EPRLLLTAAVPASFEAIAA------GYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQ 864 (996)
Q Consensus 791 ~~~~~lt~avp~~~~~~~~------~~d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl~~~~~~~~~~~~~p~~~~~~ 864 (996)
++++...+||-...... .-+.+.|....|.+.||||||.+. ..+|++||+.|..
T Consensus 220 --~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~wi~---------------- 279 (392)
T KOG2091|consen 220 --ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLEWIR---------------- 279 (392)
T ss_pred --heEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCHHHHH----------------
Confidence 46777777773221111 236889999999999999999764 4688999998875
Q ss_pred hHHHHHHHHHcCCCCcceeecc
Q psy13135 865 KKLTVDLLLTAAVPASFEAIAA 886 (996)
Q Consensus 865 ~~~~v~~~~~~gvP~~Ki~lgi 886 (996)
.++....-...-+.||.||+
T Consensus 280 --~~l~~l~~~s~~r~KiLlGl 299 (392)
T KOG2091|consen 280 --HCLHHLGGSSAKRPKILLGL 299 (392)
T ss_pred --HHHHHhCCccccccceeEee
Confidence 55554444445568999999
No 49
>KOG4701|consensus
Probab=98.77 E-value=1.4e-07 Score=102.11 Aligned_cols=104 Identities=24% Similarity=0.433 Sum_probs=75.5
Q ss_pred CceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhC----------CcceEEEeeeCCCCccCHHHHHHHHHHH
Q psy13135 447 DIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREH----------KFNGLDVDWEYPRGADDRASYVNLLKEL 516 (996)
Q Consensus 447 ~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~y----------gfDGIDIDwE~P~~~~d~~~f~~llkeL 516 (996)
++||||++||.. |+. .+++++..+.|++.+-+....- =+||+|||.|. .....|..|.+.|
T Consensus 103 GiKVlLSLGG~~-GnY----s~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~----g~~~~ysaLA~~L 173 (568)
T KOG4701|consen 103 GIKVLLSLGGYN-GNY----SLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK----GTNTAYSALAKRL 173 (568)
T ss_pred CeEEEEeccCcc-cce----eeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec----CCcchHHHHHHHH
Confidence 999999999966 332 4566667789999888765431 27999999993 3456799999999
Q ss_pred HHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhhh-hccccEEEEeecc
Q psy13135 517 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI-SKYLDFINVMTYD 567 (996)
Q Consensus 517 r~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l-~~~vD~vnvMtYD 567 (996)
|..|...+ +++.|+.|..++.....-+ ..| .+-+||+.|+.|+
T Consensus 174 ~~~Fa~~~-----r~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYN 217 (568)
T KOG4701|consen 174 LEIFASDP-----RRYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYN 217 (568)
T ss_pred HHHHccCC-----ceEEeccCCCCCCCchhhh---hhhhccccceEEEEeec
Confidence 99997654 3589999977653322111 222 2458999999998
No 50
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.69 E-value=2.1e-08 Score=82.30 Aligned_cols=54 Identities=39% Similarity=0.947 Sum_probs=48.0
Q ss_pred CCCCCCCCcccCCCCCCCcceeEcCCCeeeeccCCCCccccCCCCccCCCCCCCCCC
Q psy13135 930 SCEEEDGHISYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETCL 986 (996)
Q Consensus 930 ~C~~~~~~~~~~p~~~~C~~fy~C~~g~~~~~~Cp~gl~fn~~~~~Cd~p~~v~~C~ 986 (996)
.|+... .+++|++.+|++||+|.+|.++.+.||.|++||+..+.|+++.++. |.
T Consensus 2 ~C~~~~--~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~-C~ 55 (56)
T smart00494 2 ECPGRG--DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG-CG 55 (56)
T ss_pred cCCCCC--CccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC-CC
Confidence 466633 3689999999999999999999999999999999999999999885 75
No 51
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=1.9e-05 Score=82.12 Aligned_cols=169 Identities=22% Similarity=0.298 Sum_probs=105.8
Q ss_pred eccc-chhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCC--ccC
Q psy13135 691 FDDE-RSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--ADD 767 (996)
Q Consensus 691 ydd~-~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~--~~d 767 (996)
|.++ ...++.+..+..+| -..+.+||+-|..-. +.. ...+.|+.+|++++++|||||+|||-|.... .+.
T Consensus 80 ~~~~daeFr~~v~aLnaeG--kavllsLGGAdghIe----L~~-~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dn 152 (332)
T COG3469 80 YNDPDAEFRAQVGALNAEG--KAVLLSLGGADGHIE----LKA-GQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADN 152 (332)
T ss_pred CCCCHHHHHHHHHHhhccC--cEEEEEccCccceEE----ecc-chHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCC
Confidence 4444 44666666555443 345678887765333 222 2267899999999999999999999997631 223
Q ss_pred hHHHHHHHHHHHHHHhhcccccCCCceeEEEecC-CCHHHHhcCC--ChhhhhccccEEEccccccCCCCCCCcCCCCCC
Q psy13135 768 RASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVP-ASFEAIAAGY--DVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844 (996)
Q Consensus 768 ~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp-~~~~~~~~~~--d~~~l~~~vD~inlMtYD~~g~w~~~~g~~spl 844 (996)
..-....+|.+|+.-+.++ +++.||+|.- |....+ ..| -+.+|..+.|||+..-|..-|.....+-.++++
T Consensus 153 q~v~p~alk~vk~hyk~~G-----k~f~itMAPEfPYl~~~-gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi 226 (332)
T COG3469 153 QTVIPAALKAVKDHYKNQG-----KNFFITMAPEFPYLQGW-GAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWI 226 (332)
T ss_pred eeehHHHHHHHHHHHHhcC-----CceEEEecCCCceecCC-cccchHHHHHhhHHhhhhHHHhcCCCCCCCcCcccccc
Confidence 3345667888888777665 5789999853 111111 122 378899999999999999876532233333444
Q ss_pred CccccccccccCCCCCcccchHHHHHHHHH----------cCCCCcceeecc
Q psy13135 845 KPLEVLLITTLSIPGATSYQKKLTVDLLLT----------AAVPASFEAIAA 886 (996)
Q Consensus 845 ~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~----------~gvP~~Ki~lgi 886 (996)
.... -.+.+.-.+|+. .-+|++|+.+|+
T Consensus 227 ~q~n--------------d~~kesfly~~~~slanGtr~f~~ipa~k~aiGL 264 (332)
T COG3469 227 AQNN--------------DMVKESFLYYLTFSLANGTRGFEKIPADKFAIGL 264 (332)
T ss_pred cccc--------------HHHHHhHHHHhhhhhhcCcccceecccceeEEec
Confidence 3332 112222223332 227999999999
No 52
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=97.89 E-value=9.4e-05 Score=83.76 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=101.9
Q ss_pred HHHHHHhCCCceEEEEEc-CCCCCCcchhhccCC-HHHHHHHHHHHHHHHHhCCcceEEEeeeCCC-CccCHHHHHHHHH
Q psy13135 438 LMQLREKNPDIKILLAIG-GWAFGSTPFKELTGN-VFRMNQFVYESIEFLREHKFNGLDVDWEYPR-GADDRASYVNLLK 514 (996)
Q Consensus 438 ~~~lk~~np~lKvllSIG-G~~~~s~~fs~~~s~-~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~-~~~d~~~f~~llk 514 (996)
.+...++| +|||+-.|- -|..+.+.+..++.+ ++.+..+|+.|+++++.|||||+.||+|... ...+++++..|++
T Consensus 51 ~idaAHkn-GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~ 129 (339)
T cd06547 51 WINAAHRN-GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLR 129 (339)
T ss_pred HHHHHHhc-CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHH
Confidence 34455666 999996663 222123557888888 8999999999999999999999999999877 5788999999999
Q ss_pred HHHHHHHhhhcccCCCceEEE-EeecCchhh--hh---cCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCC
Q psy13135 515 ELRLAFEGEAKTSGEPRLLLT-AAVPASFEA--IA---AGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGA 588 (996)
Q Consensus 515 eLr~~l~~~~~~~~~~~~~Ls-vavp~~~~~--~~---~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~ 588 (996)
+|++++++.. ++..+. -..-..... +. ...+.+-+ +.+|-|.+ +|. |..
T Consensus 130 ~L~~~~~~~~-----~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl---NY~--W~~-------------- 184 (339)
T cd06547 130 YLKAKLHENV-----PGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL---NYW--WTE-------------- 184 (339)
T ss_pred HHHHHHhhcC-----CCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE---ecC--CCc--------------
Confidence 9999998753 122221 111100000 00 01122222 44553322 221 221
Q ss_pred ccccccccHHHHHHHHHHcCCCCCCeeeccccceeeeE
Q psy13135 589 TSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFT 626 (996)
Q Consensus 589 ~~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~~~ 626 (996)
..++.+++.-...|..+.+|.+||=..||...
T Consensus 185 ------~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 ------ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ------chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 13445555556788999999999999987753
No 53
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=97.60 E-value=7e-05 Score=84.76 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=68.0
Q ss_pred hhhhhcCCcceeeeeccCCCCCCcccccccc-ccccchhhhhhHHHhhhccccccccccCCCC-CccChHHHHHHHHHHH
Q psy13135 702 DWLKEDGYGGIMIWSVDMDDLSTPFKELTGN-VFRMNQFVYESIEFLREHKFNGLDVDWEYPR-GADDRASYVNLLKELR 779 (996)
Q Consensus 702 ~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~-~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~-~~~d~~~~~~fl~elr 779 (996)
+.++++|+.-++..-+..++....++.++.+ +..+.++++.|+++++.|||||+.||+|... .++++++++.|+++|+
T Consensus 53 daAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~ 132 (339)
T cd06547 53 NAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLK 132 (339)
T ss_pred HHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHH
Confidence 4677777654444444443333456777887 9999999999999999999999999999986 5889999999999999
Q ss_pred HHHhhc
Q psy13135 780 LAFEGE 785 (996)
Q Consensus 780 ~~l~~~ 785 (996)
+++++.
T Consensus 133 ~~~~~~ 138 (339)
T cd06547 133 AKLHEN 138 (339)
T ss_pred HHHhhc
Confidence 999864
No 54
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.29 E-value=0.00085 Score=75.24 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=89.5
Q ss_pred HHHHHHhCCCceEEEEEc-CCCCCCcchhhccC-CHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc-cCHHHHHHHHH
Q psy13135 438 LMQLREKNPDIKILLAIG-GWAFGSTPFKELTG-NVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA-DDRASYVNLLK 514 (996)
Q Consensus 438 ~~~lk~~np~lKvllSIG-G~~~~s~~fs~~~s-~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~-~d~~~f~~llk 514 (996)
.+...++| ++|||=.|- .|..+...+..++. ++.....+++.++++++-|||||.-|++|.+... .+...+..|++
T Consensus 47 widaAHrn-GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~ 125 (311)
T PF03644_consen 47 WIDAAHRN-GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLK 125 (311)
T ss_dssp HHHHHHHT-T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHH
T ss_pred hHHHHHhc-CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHH
Confidence 44566777 999983331 22323456788887 7778889999999999999999999999988754 68899999999
Q ss_pred HHHHHHHhhhcccCCCceEEEE--eecCc-hhhhhcCCCh--hhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCc
Q psy13135 515 ELRLAFEGEAKTSGEPRLLLTA--AVPAS-FEAIAAGYDV--PEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGAT 589 (996)
Q Consensus 515 eLr~~l~~~~~~~~~~~~~Lsv--avp~~-~~~~~~~yd~--~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~ 589 (996)
+|++++++ .. ...|.- ++... .-.+....+- ....+.+|-|.+ +|. |
T Consensus 126 ~l~~~~~~-~~-----~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl---NY~--W----------------- 177 (311)
T PF03644_consen 126 YLRKEAHE-NP-----GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL---NYN--W----------------- 177 (311)
T ss_dssp HHHHHHHH-T------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE----S---------------------
T ss_pred HHHHHhhc-CC-----CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE---ecC--C-----------------
Confidence 99999986 31 122211 11100 0000000000 001222333222 221 1
Q ss_pred cccccccHHHHHHHHHHcCCCCCCeeeccccceee
Q psy13135 590 SYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRS 624 (996)
Q Consensus 590 ~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~YG~~ 624 (996)
....+..+++.....|.++.+|.+||=..||.
T Consensus 178 ---~~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 178 ---NPDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ---SHHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ---CcccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 12357778888888999999999999999987
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.17 E-value=0.0039 Score=70.14 Aligned_cols=129 Identities=23% Similarity=0.307 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEe-eeCCCC-----------------------ccC-------HHHHHHHHHHHH
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVD-WEYPRG-----------------------ADD-------RASYVNLLKELR 517 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDID-wE~P~~-----------------------~~d-------~~~f~~llkeLr 517 (996)
..|+.|+-.++-+.+++++|.+|||.|| .-||.. ..| +++...|+++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5788888888888899999999999999 455420 234 678899999999
Q ss_pred HHHHhhhcccCCCceEEEEeecCch-hhhhc-CCChhhh--hccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccc
Q psy13135 518 LAFEGEAKTSGEPRLLLTAAVPASF-EAIAA-GYDVPEI--SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQK 593 (996)
Q Consensus 518 ~~l~~~~~~~~~~~~~Lsvavp~~~-~~~~~-~yd~~~l--~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~ 593 (996)
+++++.. |.+.+++++-+.. ..... .-|...- ..++|++..|.|-..-. + .
T Consensus 214 ~~ik~~k-----P~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~------~--------------~ 268 (311)
T PF02638_consen 214 DAIKAIK-----PWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFS------H--------------F 268 (311)
T ss_pred HHHHHhC-----CCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccc------h--------------h
Confidence 9998764 5678888765443 11111 1244433 36899999999953100 0 0
Q ss_pred cccHHHHHHHHHHcCCC-CCCeeeccccce
Q psy13135 594 KLTVEYSAKEWVKQGAP-KEKLMIGMPTYG 622 (996)
Q Consensus 594 ~~~v~~~v~~~l~~Gvp-~~KLvLGlp~YG 622 (996)
...++..+..|.+.-.+ .-+|.+|+.+|-
T Consensus 269 ~~~~~~~~~~w~~~~~~~~v~ly~G~~~y~ 298 (311)
T PF02638_consen 269 TAPYEQLAKWWAKQVKPTNVHLYIGLALYK 298 (311)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEccCcCC
Confidence 12466677778765444 359999999884
No 56
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.37 E-value=0.035 Score=56.51 Aligned_cols=85 Identities=11% Similarity=0.193 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHHh-CCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcC
Q psy13135 470 NVFRMNQFVYESIEFLRE-HKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAG 548 (996)
Q Consensus 470 ~~~~r~~fi~siv~~l~~-ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~ 548 (996)
+++..++..+.+.++-.. +...||.||+..+ ......|..|+++||++|.. ++-||++.=+......
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~--t~~L~~Y~~fL~~LR~~LP~--------~~~LSIT~L~dW~~~~-- 89 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA--TSRLPAYAQFLQQLRQRLPP--------DYRLSITALPDWLSSP-- 89 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc--ccchHHHHHHHHHHHHhCCC--------CceEeeEEehhhhcCc--
Confidence 344545555555555433 3689999999965 46788999999999999974 3677777555432211
Q ss_pred CChhhhhccccEEEEeec
Q psy13135 549 YDVPEISKYLDFINVMTY 566 (996)
Q Consensus 549 yd~~~l~~~vD~vnvMtY 566 (996)
-.+..|...||.+.+|+|
T Consensus 90 ~~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 90 DWLNALPGVVDELVLQVY 107 (181)
T ss_pred hhhhhHhhcCCeeEEEee
Confidence 137889999999999999
No 57
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=95.55 E-value=0.019 Score=58.30 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=59.6
Q ss_pred hhhhhhHHHhh---hc--cccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCC
Q psy13135 738 QFVYESIEFLR---EH--KFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYD 812 (996)
Q Consensus 738 ~~i~siv~~l~---~~--~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d 812 (996)
..+..|++.+. .. ...||.|||..+ ....+.|..||++||.+| +..+.|||+.=++.. ..-+
T Consensus 24 ~~~~~i~~~l~~W~~~G~~v~giQIDfDa~--t~~L~~Y~~fL~~LR~~L--------P~~~~LSIT~L~dW~---~~~~ 90 (181)
T PF11340_consen 24 QVLARILQLLQRWQAAGNNVAGIQIDFDAA--TSRLPAYAQFLQQLRQRL--------PPDYRLSITALPDWL---SSPD 90 (181)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEecCcc--ccchHHHHHHHHHHHHhC--------CCCceEeeEEehhhh---cCch
Confidence 34445555543 23 478999999966 778999999999999999 567888888655422 3345
Q ss_pred -hhhhhccccEEEcccc
Q psy13135 813 -VPEISKYLDFINVMTY 828 (996)
Q Consensus 813 -~~~l~~~vD~inlMtY 828 (996)
+.++.+.||.+.+|+|
T Consensus 91 ~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 91 WLNALPGVVDELVLQVY 107 (181)
T ss_pred hhhhHhhcCCeeEEEee
Confidence 8889999999999999
No 58
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.34 E-value=0.034 Score=62.61 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=70.3
Q ss_pred ccccccchhhhhhHHHhhhccccccccc-cCCCC-----------------------CccC-------hHHHHHHHHHHH
Q psy13135 731 GNVFRMNQFVYESIEFLREHKFNGLDVD-WEYPR-----------------------GADD-------RASYVNLLKELR 779 (996)
Q Consensus 731 ~~~~~r~~~i~siv~~l~~~~~DGvdiD-wE~p~-----------------------~~~d-------~~~~~~fl~elr 779 (996)
+.|+.|+.+++-+.+++++|.+|||.|| .-||. .++| +++.+.|+++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999 44542 1245 889999999999
Q ss_pred HHHhhcccccCCCceeEEEecCCCH-HHHh-cCCChhhh--hccccEEEcccccc
Q psy13135 780 LAFEGEAKTSGEPRLLLTAAVPASF-EAIA-AGYDVPEI--SKYLDFINVMTYDF 830 (996)
Q Consensus 780 ~~l~~~~~~~~~~~~~lt~avp~~~-~~~~-~~~d~~~l--~~~vD~inlMtYD~ 830 (996)
+++++.. +...+++++-+.. .... ..-|...- ..++|+|..|.|-.
T Consensus 214 ~~ik~~k-----P~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 214 DAIKAIK-----PWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHhC-----CCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeeccc
Confidence 9998763 6778888765433 1111 12244433 37899999999954
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.34 E-value=0.46 Score=53.31 Aligned_cols=87 Identities=20% Similarity=0.324 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCcceEEEeee-CCCC----------cc----CHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecC
Q psy13135 476 QFVYESIEFLREHKFNGLDVDWE-YPRG----------AD----DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPA 540 (996)
Q Consensus 476 ~fi~siv~~l~~ygfDGIDIDwE-~P~~----------~~----d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~ 540 (996)
...-.|..-+.+.|||.|.||.- ||.. .. -.+....||+..|++|+..+ ..||+.|..
T Consensus 124 ~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~-------v~vSaDVfG 196 (316)
T PF13200_consen 124 DYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG-------VPVSADVFG 196 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC-------CCEEEEecc
Confidence 44455777777889999999984 7761 11 23678899999999998764 578888876
Q ss_pred chhhh----hcCCChhhhhccccEEEEeeccCC
Q psy13135 541 SFEAI----AAGYDVPEISKYLDFINVMTYDFH 569 (996)
Q Consensus 541 ~~~~~----~~~yd~~~l~~~vD~vnvMtYD~~ 569 (996)
..... .-|-++..|+++||+|.-|-|-=|
T Consensus 197 ~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 197 YVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH 229 (316)
T ss_pred cccccCCCCCcCCCHHHHhhhCCEEEecccccc
Confidence 43322 336789999999999999999744
No 60
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=94.62 E-value=0.017 Score=64.92 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=55.3
Q ss_pred hhhhhcCCcceeeeeccCCCCCCccccccc-cccccchhhhhhHHHhhhccccccccccCCCCCc-cChHHHHHHHHHHH
Q psy13135 702 DWLKEDGYGGIMIWSVDMDDLSTPFKELTG-NVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA-DDRASYVNLLKELR 779 (996)
Q Consensus 702 ~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~-~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~-~d~~~~~~fl~elr 779 (996)
+.+.++|+.-+...-...++....+..++. ++.....+++.++++++-|||||.-|++|.+... ...+++..|+++|+
T Consensus 49 daAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~ 128 (311)
T PF03644_consen 49 DAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLR 128 (311)
T ss_dssp HHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHH
Confidence 445666654222222233333334555666 7777888999999999999999999999998655 79999999999999
Q ss_pred HHHhh
Q psy13135 780 LAFEG 784 (996)
Q Consensus 780 ~~l~~ 784 (996)
+++++
T Consensus 129 ~~~~~ 133 (311)
T PF03644_consen 129 KEAHE 133 (311)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99986
No 61
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=93.72 E-value=0.4 Score=53.79 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=85.1
Q ss_pred EEeecccchhhhhchhhhhcCCcceeeeeccCCCCCCccccccccc---cccchhhhhhHHHhhhcccccccccc-CCCC
Q psy13135 688 WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNV---FRMNQFVYESIEFLREHKFNGLDVDW-EYPR 763 (996)
Q Consensus 688 wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~---~~r~~~i~siv~~l~~~~~DGvdiDw-E~p~ 763 (996)
.+.|-|+.--+.+.+++-...-|+ +|.-. .. .. .-+| +.++- +-.|..-+.+.|||.|.+|. .+|.
T Consensus 81 Iv~FkD~~la~~~pe~av~~~~G~--~w~d~-~~--~~----WvnP~~~evw~Y-~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 81 IVVFKDPVLAEAHPEWAVKTKDGS--VWRDN-EG--EA----WVNPYSKEVWDY-NIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred EEEecChHHhhhChhhEEECCCCC--cccCC-CC--Cc----cCCCCCHHHHHH-HHHHHHHHHHcCCCEEEeeeeecCC
Confidence 456777766666666655333333 46522 11 11 2223 33333 44477777788999999995 7775
Q ss_pred C----------cc----ChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHHHH----hcCCChhhhhccccEEEc
Q psy13135 764 G----------AD----DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAI----AAGYDVPEISKYLDFINV 825 (996)
Q Consensus 764 ~----------~~----d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~----~~~~d~~~l~~~vD~inl 825 (996)
. .. -.+..+.||+..|++|+.. +..||++|-+..... .-+-++..|+++||+|.-
T Consensus 151 ~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~-------~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsP 223 (316)
T PF13200_consen 151 EGRLSGLDYSENDTEESRVDAITDFLAYAREELHPY-------GVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISP 223 (316)
T ss_pred CCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHc-------CCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEe
Confidence 1 11 2478999999999999754 468888886643222 236799999999999999
Q ss_pred cccccCCC
Q psy13135 826 MTYDFHGQ 833 (996)
Q Consensus 826 MtYD~~g~ 833 (996)
|-|-=|..
T Consensus 224 MiYPSh~~ 231 (316)
T PF13200_consen 224 MIYPSHYG 231 (316)
T ss_pred cccccccC
Confidence 99987765
No 62
>KOG2331|consensus
Probab=91.87 E-value=0.75 Score=52.20 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=67.8
Q ss_pred HhCCCceEEE-EEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHH
Q psy13135 443 EKNPDIKILL-AIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFE 521 (996)
Q Consensus 443 ~~np~lKvll-SIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~ 521 (996)
+++ |+||+= -|-.|..|...-+++++++++.+..++.++++.+-.||||=-|+.|.-.......++..|++.|.++++
T Consensus 121 HrH-GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~~~~ 199 (526)
T KOG2331|consen 121 HRH-GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTKVLH 199 (526)
T ss_pred hhc-CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHHHHh
Confidence 344 999983 456787777778899999999999999999999999999999999966555667789999999999998
Q ss_pred hh
Q psy13135 522 GE 523 (996)
Q Consensus 522 ~~ 523 (996)
+.
T Consensus 200 ~~ 201 (526)
T KOG2331|consen 200 SS 201 (526)
T ss_pred hc
Confidence 64
No 63
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=88.50 E-value=14 Score=40.80 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCcEEEE-EEEEeeCCe----eEeCCCcchhhhhHHHHHH-HHHHhCCCceEEEEE--cCCCCCCc--------------
Q psy13135 405 LCTHVIY-AFGTLKDHK----LTLNEDKEKDEAGKFEALM-QLREKNPDIKILLAI--GGWAFGST-------------- 462 (996)
Q Consensus 405 ~cTHIiy-afa~v~~~~----~~~~~~~~~~~~~~~~~~~-~lk~~np~lKvllSI--GG~~~~s~-------------- 462 (996)
..++|.+ +|...++++ +-+.+.......+.+.++. +|+.+. ++||..-+ -+|.....
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4566665 566555433 2233333344567888877 777666 88987433 23322110
Q ss_pred chhhc-cCCHHHHHHHHHHHHHHHHhC-CcceEEE-------eeeCCCCcc------CHHHHHHHHHHHHHHHHhhhccc
Q psy13135 463 PFKEL-TGNVFRMNQFVYESIEFLREH-KFNGLDV-------DWEYPRGAD------DRASYVNLLKELRLAFEGEAKTS 527 (996)
Q Consensus 463 ~fs~~-~s~~~~r~~fi~siv~~l~~y-gfDGIDI-------DwE~P~~~~------d~~~f~~llkeLr~~l~~~~~~~ 527 (996)
...++ .=++.. .+.|++|-+=|-.| .||||=| |+|.|.... ....+..|..+|++..+...
T Consensus 109 ~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r--- 184 (294)
T PF14883_consen 109 GYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR--- 184 (294)
T ss_pred CceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC---
Confidence 11111 114444 45688888888887 8999998 344322111 12457888899998887653
Q ss_pred CCCceEEEE------eecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCCCCccccccccHHHHH
Q psy13135 528 GEPRLLLTA------AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSA 601 (996)
Q Consensus 528 ~~~~~~Lsv------avp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~~~~~~~~~~~v~~~v 601 (996)
|.+...- .+.+..+.+. +-++..+.+..||..+|+.-|+.. ++ .....+...+
T Consensus 185 --p~lkTARNiya~pvl~P~se~Wf-AQnl~~fl~~YD~taimAMPymE~--------~~----------~~~~WL~~Lv 243 (294)
T PF14883_consen 185 --PDLKTARNIYAEPVLNPESEAWF-AQNLDDFLKAYDYTAIMAMPYMEQ--------AE----------DPEQWLAQLV 243 (294)
T ss_pred --ccchhhhcccccccCCcchhhHH-HHhHHHHHHhCCeeheeccchhcc--------cc----------CHHHHHHHHH
Confidence 2222111 1122112221 346788888899999999876532 10 1233667777
Q ss_pred HHHHHcCCCCCCeeeccccc
Q psy13135 602 KEWVKQGAPKEKLMIGMPTY 621 (996)
Q Consensus 602 ~~~l~~Gvp~~KLvLGlp~Y 621 (996)
+.......+.+|+|+-+...
T Consensus 244 ~~v~~~p~~l~KtvFELQa~ 263 (294)
T PF14883_consen 244 DAVAARPGGLDKTVFELQAV 263 (294)
T ss_pred HHHHhcCCcccceEEEEecc
Confidence 77777777789999888754
No 64
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=82.16 E-value=10 Score=42.17 Aligned_cols=106 Identities=15% Similarity=0.281 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc------cCH
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA------DDR 506 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~------~d~ 506 (996)
...+.+...++..++..++++|+|.. + +.++ .+++.+.++|+|+|+|++--|... .+.
T Consensus 84 ~~~~~i~~~~~~~~~~pvi~si~g~~------------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~ 147 (289)
T cd02810 84 VWLQDIAKAKKEFPGQPLIASVGGSS------------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDP 147 (289)
T ss_pred HHHHHHHHHHhccCCCeEEEEeccCC------------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCH
Confidence 34455555554435789999999842 1 2233 345666778999999999877532 234
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCC-hhhhhcc-ccEEEEee
Q psy13135 507 ASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYD-VPEISKY-LDFINVMT 565 (996)
Q Consensus 507 ~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd-~~~l~~~-vD~vnvMt 565 (996)
.....+++++|++++ +-|++-+.+.... ..... .+.+.+. +|+|.+..
T Consensus 148 ~~~~eiv~~vr~~~~----------~pv~vKl~~~~~~-~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 148 EAVANLLKAVKAAVD----------IPLLVKLSPYFDL-EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHccC----------CCEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEEc
Confidence 455566777776541 3466665553210 00011 1222222 79998753
No 65
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=78.73 E-value=2.9 Score=34.89 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=20.0
Q ss_pred cceeEcCCCeeeeccCCCCccc
Q psy13135 948 THYYMCEGERKHHMPCPSNLVF 969 (996)
Q Consensus 948 ~~fy~C~~g~~~~~~Cp~gl~f 969 (996)
.+|-+|.+|....+.||+||+.
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCEE
Confidence 3699999999999999999975
No 66
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=78.14 E-value=14 Score=41.78 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCceEE--EEEcCCCCCCcchhh-----------------------ccCCHHHHHHHHHHHHHHHHhCCc
Q psy13135 436 EALMQLREKNPDIKIL--LAIGGWAFGSTPFKE-----------------------LTGNVFRMNQFVYESIEFLREHKF 490 (996)
Q Consensus 436 ~~~~~lk~~np~lKvl--lSIGG~~~~s~~fs~-----------------------~~s~~~~r~~fi~siv~~l~~ygf 490 (996)
..+..||.+ +.+|+ ||||-+..-...|.. -..+++-|.-+.+. ++.+.+-||
T Consensus 85 ~~i~~Lk~~--g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 85 EEIVRAAAA--GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred HHHHHHHhC--CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 456677754 67777 899985421111111 12345566555555 677788899
Q ss_pred ceEEEeee--C---CC----CccCHHHHHHHHHHHHHHHHhhh
Q psy13135 491 NGLDVDWE--Y---PR----GADDRASYVNLLKELRLAFEGEA 524 (996)
Q Consensus 491 DGIDIDwE--~---P~----~~~d~~~f~~llkeLr~~l~~~~ 524 (996)
|||.||.- | +. .+...+..+.|+++|.+..++..
T Consensus 162 DGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~ 204 (315)
T TIGR01370 162 DGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQN 204 (315)
T ss_pred CeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHC
Confidence 99999963 1 11 02234678889999987777653
No 67
>KOG2331|consensus
Probab=68.71 E-value=5.5 Score=45.54 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=77.3
Q ss_pred ceEeeCCeEEeecccchhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhcccccccccc
Q psy13135 680 PFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDW 759 (996)
Q Consensus 680 py~~~~~~wv~ydd~~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDw 759 (996)
-|.|...++|+..-+- -...+..+|+.-+..+-...+.....+++++.++++-+..++-++++.+-.||||-=|+.
T Consensus 100 ~F~YFSH~~VTiPP~~----wtn~AHrHGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNi 175 (526)
T KOG2331|consen 100 IFVYFSHHLVTIPPPG----WTNTAHRHGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINI 175 (526)
T ss_pred EEEEeecceeecCCCc----ccchhhhcCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEe
Confidence 3455555555543221 122356677665555566666666677888889899999999999999999999999999
Q ss_pred CCCCCccChHHHHHHHHHHHHHHhhc
Q psy13135 760 EYPRGADDRASYVNLLKELRLAFEGE 785 (996)
Q Consensus 760 E~p~~~~d~~~~~~fl~elr~~l~~~ 785 (996)
|.-.......++..|++.|.++++..
T Consensus 176 En~i~~~~i~~l~~F~~~Lt~~~~~~ 201 (526)
T KOG2331|consen 176 ENKIDLAKIPNLIQFVSHLTKVLHSS 201 (526)
T ss_pred eeccChhhCccHHHHHHHHHHHHhhc
Confidence 98877888999999999999999854
No 68
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=68.37 E-value=13 Score=40.75 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCcceEEEeee-CCCCc---------------cCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecC
Q psy13135 477 FVYESIEFLREHKFNGLDVDWE-YPRGA---------------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPA 540 (996)
Q Consensus 477 fi~siv~~l~~ygfDGIDIDwE-~P~~~---------------~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~ 540 (996)
.--+|.+-+.+.|||-|.+|+- ||... +-.+.+..||.--|++|. .-+|+.+-.
T Consensus 197 YNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DIYG 266 (400)
T COG1306 197 YNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADIYG 266 (400)
T ss_pred hhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEeec
Confidence 3345777888999999999985 77531 123456667777777764 346665543
Q ss_pred c----hhhhhcCCChhhhhccccEEEEeeccCCC
Q psy13135 541 S----FEAIAAGYDVPEISKYLDFINVMTYDFHG 570 (996)
Q Consensus 541 ~----~~~~~~~yd~~~l~~~vD~vnvMtYD~~g 570 (996)
. .....-|.+++.|+.+||.|.-|.|--|-
T Consensus 267 ~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 267 QNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred ccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 2 23333467899999999999999997554
No 69
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.09 E-value=8.5 Score=44.82 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=64.2
Q ss_pred ccccccchhhhhhHHHhhhccccccccc--cCCCCC-------------------cc--------ChHHHHHHHHHHHHH
Q psy13135 731 GNVFRMNQFVYESIEFLREHKFNGLDVD--WEYPRG-------------------AD--------DRASYVNLLKELRLA 781 (996)
Q Consensus 731 ~~~~~r~~~i~siv~~l~~~~~DGvdiD--wE~p~~-------------------~~--------d~~~~~~fl~elr~~ 781 (996)
+.|+.|+-..+-+++.+++|..|||.+| |=+|.. +. -+++-+.||+.+...
T Consensus 179 g~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~ 258 (418)
T COG1649 179 GIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQT 258 (418)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 4466677777777889999999999999 334421 11 156889999999999
Q ss_pred HhhcccccCCCceeEEEec-CC-CHHHHhcCCCh--------hhhhccccEEEccccccC
Q psy13135 782 FEGEAKTSGEPRLLLTAAV-PA-SFEAIAAGYDV--------PEISKYLDFINVMTYDFH 831 (996)
Q Consensus 782 l~~~~~~~~~~~~~lt~av-p~-~~~~~~~~~d~--------~~l~~~vD~inlMtYD~~ 831 (996)
+++. ++...++++. ++ ..... .|++ -+ ..++|++-.|.|--|
T Consensus 259 VKav-----Kp~v~~svsp~n~~~~~~f--~y~~~~qDw~~Wv~-~G~iD~l~pqvYr~~ 310 (418)
T COG1649 259 VKAV-----KPNVKFSVSPFNPLGSATF--AYDYFLQDWRRWVR-QGLIDELAPQVYRTL 310 (418)
T ss_pred HHhh-----CCCeEEEEccCCCCCccce--ehhhhhhhHHHHHH-cccHhhhhhhhhccc
Confidence 9876 5778888888 52 22111 1221 11 468999999999653
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=60.89 E-value=32 Score=33.71 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=27.1
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHhCCcceEEEee
Q psy13135 464 FKELTGNVFRMNQFVYESIEFLREHKFNGLDVDW 497 (996)
Q Consensus 464 fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDw 497 (996)
+..+--|..-++-++..+-+++++|.+|||-|||
T Consensus 99 ~~~~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 99 WYTCCLNSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceecCCCccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 4445556667787888888899999999999986
No 71
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.69 E-value=18 Score=42.17 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCcceEEEeee--CCCC-------------------ccC--------HHHHHHHHHHHHHHH
Q psy13135 470 NVFRMNQFVYESIEFLREHKFNGLDVDWE--YPRG-------------------ADD--------RASYVNLLKELRLAF 520 (996)
Q Consensus 470 ~~~~r~~fi~siv~~l~~ygfDGIDIDwE--~P~~-------------------~~d--------~~~f~~llkeLr~~l 520 (996)
.++.|+-..+-+++.++.|..|||.||-- ||.. ..+ +++..+|++.|...+
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35565555566778999999999999853 2221 011 457889999999999
Q ss_pred HhhhcccCCCceEEEEee-cCchhhhhcCCC-----hhhh--hccccEEEEeecc
Q psy13135 521 EGEAKTSGEPRLLLTAAV-PASFEAIAAGYD-----VPEI--SKYLDFINVMTYD 567 (996)
Q Consensus 521 ~~~~~~~~~~~~~Lsvav-p~~~~~~~~~yd-----~~~l--~~~vD~vnvMtYD 567 (996)
++. +|...++++. ++.... ...|+ ...- ..++|++.+|.|=
T Consensus 260 Kav-----Kp~v~~svsp~n~~~~~-~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 260 KAV-----KPNVKFSVSPFNPLGSA-TFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred Hhh-----CCCeEEEEccCCCCCcc-ceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 875 3567888887 421110 01232 1111 4689999999995
No 72
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=59.19 E-value=1.4e+02 Score=34.34 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEE--cCCCCCCc------c--------hhhccCCH---HHHHHHHHHHHHHHHhCCcc
Q psy13135 431 EAGKFEALMQLREKNPDIKILLAI--GGWAFGST------P--------FKELTGNV---FRMNQFVYESIEFLREHKFN 491 (996)
Q Consensus 431 ~~~~~~~~~~lk~~np~lKvllSI--GG~~~~s~------~--------fs~~~s~~---~~r~~fi~siv~~l~~ygfD 491 (996)
....++++...-+++ +.|+++-| +|....+. . ....++.+ ...+.|++.+. .+++-|||
T Consensus 75 ~i~~~~~l~~~vh~~-g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~-~a~~aGfD 152 (353)
T cd02930 75 QAAGHRLITDAVHAE-GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAA-LAREAGYD 152 (353)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 344566666555555 88988777 23221110 0 00112211 23455666554 45667999
Q ss_pred eEEEee
Q psy13135 492 GLDVDW 497 (996)
Q Consensus 492 GIDIDw 497 (996)
||+|..
T Consensus 153 gVeih~ 158 (353)
T cd02930 153 GVEIMG 158 (353)
T ss_pred EEEEec
Confidence 999976
No 73
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=55.96 E-value=93 Score=36.27 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcC-CCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGG-WAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG 502 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG-~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~ 502 (996)
.+++.+..+|++.|++.|+.||.| .+ .+ .++ .+++.+++.|.|+|+|++-.|..
T Consensus 99 ~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~-------------~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 99 TMLAEFKQLKEEYPDRILIASIMEEYN--KD-------------AWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHhhCCCCcEEEEccCCCC--HH-------------HHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 455667778877788999999954 22 11 222 24456677899999999988764
No 74
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.89 E-value=41 Score=38.44 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeeeC
Q psy13135 474 MNQFVYESIEFLREHKFNGLDVDWEY 499 (996)
Q Consensus 474 r~~fi~siv~~l~~ygfDGIDIDwE~ 499 (996)
.+.|++.+ ..+++.|||||+|+--.
T Consensus 148 i~~~~~aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 148 IDRFAHAA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEchhh
Confidence 35666644 46778899999998653
No 75
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=14 Score=40.62 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred hhHHHhhhcccccccccc-CCCCC---------------ccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHH
Q psy13135 742 ESIEFLREHKFNGLDVDW-EYPRG---------------ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFE 805 (996)
Q Consensus 742 siv~~l~~~~~DGvdiDw-E~p~~---------------~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~ 805 (996)
+|.+-+.+.|||-|.+|+ .+|.. -+-.+.+..||.--|++|. .-+|+.+.....
T Consensus 200 tIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DIYG~nG 269 (400)
T COG1306 200 TIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADIYGQNG 269 (400)
T ss_pred HHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEeecccC
Confidence 455566777888888885 56631 1234667788888888884 457777765322
Q ss_pred H----HhcCCChhhhhccccEEEccccccCCC
Q psy13135 806 A----IAAGYDVPEISKYLDFINVMTYDFHGQ 833 (996)
Q Consensus 806 ~----~~~~~d~~~l~~~vD~inlMtYD~~g~ 833 (996)
. ..-+-++..|+.|||.|.-|-|--|-+
T Consensus 270 w~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy~ 301 (400)
T COG1306 270 WSSTDMALGQFWEALSSYVDVISPMFYPSHYG 301 (400)
T ss_pred ccCCcchhhhhHHHHHhhhhhccccccccccc
Confidence 1 223578999999999999999987643
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=53.52 E-value=68 Score=39.28 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhh
Q psy13135 472 FRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEA 524 (996)
Q Consensus 472 ~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~ 524 (996)
..|+-+++++.-|+++|++||+-||--.-. .+. .-..|++++++++++..
T Consensus 220 ~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~--~~~-~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 220 EVRRYILDNALYWLREYHFDGLRLDAVHAI--ADT-SAKHILEELAREVHELA 269 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCHHHh--ccc-cHHHHHHHHHHHHHHHC
Confidence 778888999999999999999999953111 111 12468899999887654
No 77
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.93 E-value=75 Score=35.43 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc-------cC
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA-------DD 505 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~-------~d 505 (996)
...+.+...++. .+.+++++|+|.. .+.|++ ++..+++.|+|+|+|++-.|... .+
T Consensus 76 ~~~~~~~~~~~~-~~~p~ivsi~g~~---------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~ 138 (296)
T cd04740 76 AFLEELLPWLRE-FGTPVIASIAGST---------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTD 138 (296)
T ss_pred HHHHHHHHHhhc-CCCcEEEEEecCC---------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCC
Confidence 445555555443 4788999998732 234444 45566778999999998877532 23
Q ss_pred HHHHHHHHHHHHHHH
Q psy13135 506 RASYVNLLKELRLAF 520 (996)
Q Consensus 506 ~~~f~~llkeLr~~l 520 (996)
......+++++|++.
T Consensus 139 ~~~~~eiv~~vr~~~ 153 (296)
T cd04740 139 PEAVAEIVKAVKKAT 153 (296)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344455666666554
No 78
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=51.49 E-value=1.9e+02 Score=36.26 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=108.5
Q ss_pred CCCcEEEE-EEEEeeCCe----eEeCCCcchhhhhHHHHH-HHHHHhCCCceEE--EEEcCCCCCCc-------------
Q psy13135 404 KLCTHVIY-AFGTLKDHK----LTLNEDKEKDEAGKFEAL-MQLREKNPDIKIL--LAIGGWAFGST------------- 462 (996)
Q Consensus 404 ~~cTHIiy-afa~v~~~~----~~~~~~~~~~~~~~~~~~-~~lk~~np~lKvl--lSIGG~~~~s~------------- 462 (996)
-..+||.+ ||+..++++ +-+.+..-....+.|.++ -+|+.+. ++||. +-+-+|.....
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 45888887 787776543 333344444466788888 6777776 88887 33334432110
Q ss_pred ------chhhcc-CCHHHHHHHHHHHHHHHHhC-CcceEEEeeeCC---------------------CC----ccC----
Q psy13135 463 ------PFKELT-GNVFRMNQFVYESIEFLREH-KFNGLDVDWEYP---------------------RG----ADD---- 505 (996)
Q Consensus 463 ------~fs~~~-s~~~~r~~fi~siv~~l~~y-gfDGIDIDwE~P---------------------~~----~~d---- 505 (996)
.+.++- =++.. .+.|.+|-+=|-.| .||||=|+=+-- .+ ..+
T Consensus 425 ~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 111111 13333 36688888877777 899998865311 00 001
Q ss_pred -------HHHHHHHHHHHHHHHHhhhcccCCCceEEEE------eecCchhhhhcCCChhhhhccccEEEEeeccCCCCC
Q psy13135 506 -------RASYVNLLKELRLAFEGEAKTSGEPRLLLTA------AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQW 572 (996)
Q Consensus 506 -------~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsv------avp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w 572 (996)
...+..|-.+|++..++... |.+...- .+.+..+.+. +-++..+.+..||+.+|+|-+--.
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~----p~~~tarniya~~~l~p~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~- 577 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRG----PQVKSARNIFAMPILEPESEAWF-AQNLDDFLANYDWVAPMAMPLMEK- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC----ccceehhcccccccCChhHHHHH-HhHHHHHHhhcchhHHhhchhhhc-
Confidence 12356788888888875321 1122111 1112122221 347888889999999999875321
Q ss_pred CCCcCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeccccc
Q psy13135 573 ERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTY 621 (996)
Q Consensus 573 ~~~~g~~sPL~~~~~~~~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~Y 621 (996)
++. .....++...++...+.-...+|+|+-+..-
T Consensus 578 -------~~~--------~~~~~w~~~l~~~v~~~~~~~~k~vfelQ~~ 611 (672)
T PRK14581 578 -------VPL--------SESNEWLAELVNKVAQRPGALEKTVFELQSK 611 (672)
T ss_pred -------ccc--------ccHHHHHHHHHHHHHhcCCcccceEEEeecc
Confidence 110 0112345555665554545679999877643
No 79
>KOG1552|consensus
Probab=50.74 E-value=28 Score=37.89 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=15.9
Q ss_pred CCcceeEcCCCeeeeccCCCC
Q psy13135 946 DCTHYYMCEGERKHHMPCPSN 966 (996)
Q Consensus 946 ~C~~fy~C~~g~~~~~~Cp~g 966 (996)
..+.++.|.+|.+.-..|+.-
T Consensus 201 tdDevv~~sHg~~Lye~~k~~ 221 (258)
T KOG1552|consen 201 TDDEVVDFSHGKALYERCKEK 221 (258)
T ss_pred ccCceecccccHHHHHhcccc
Confidence 456778888888888888874
No 80
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=48.67 E-value=91 Score=34.90 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCC-cceEEEeeeCCCCc-------cC
Q psy13135 434 KFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FNGLDVDWEYPRGA-------DD 505 (996)
Q Consensus 434 ~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~yg-fDGIDIDwE~P~~~-------~d 505 (996)
..+.+...+++. +..++++|+|.+ .+.|++ ++..++++| +|||+|+.--|... ++
T Consensus 79 ~~~~~~~~~~~~-~~p~i~si~g~~---------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~ 141 (301)
T PRK07259 79 FIEEELPWLEEF-DTPIIANVAGST---------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTD 141 (301)
T ss_pred HHHHHHHHHhcc-CCcEEEEeccCC---------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccC
Confidence 444554444333 678999998732 144544 445567888 99999988655421 23
Q ss_pred HHHHHHHHHHHHHHH
Q psy13135 506 RASYVNLLKELRLAF 520 (996)
Q Consensus 506 ~~~f~~llkeLr~~l 520 (996)
.+....+++++|++.
T Consensus 142 ~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 142 PELAYEVVKAVKEVV 156 (301)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445556666666554
No 81
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=48.15 E-value=1.1e+02 Score=36.05 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc----------c
Q psy13135 435 FEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA----------D 504 (996)
Q Consensus 435 ~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~----------~ 504 (996)
.+.+..+++..++..+++||.|.. ++ +.|+ .++..+++.++|+|+|+.-.|... +
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~g~~-----------~~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~ 151 (420)
T PRK08318 87 LREIRRVKRDYPDRALIASIMVEC-----------NE---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ 151 (420)
T ss_pred HHHHHHHHhhCCCceEEEEeccCC-----------CH---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC
Confidence 344555655555677889998731 11 2233 345566778899999999988621 4
Q ss_pred CHHHHHHHHHHHHHHH
Q psy13135 505 DRASYVNLLKELRLAF 520 (996)
Q Consensus 505 d~~~f~~llkeLr~~l 520 (996)
+.+.+..+++.+++..
T Consensus 152 ~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 152 VPELVEMYTRWVKRGS 167 (420)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 5666777777777653
No 82
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=47.91 E-value=41 Score=41.07 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCcceEEEeee--------CCCC-c-cCHHHHHHHHHHHHHHHH
Q psy13135 468 TGNVFRMNQFVYESIEFLREHKFNGLDVDWE--------YPRG-A-DDRASYVNLLKELRLAFE 521 (996)
Q Consensus 468 ~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE--------~P~~-~-~d~~~f~~llkeLr~~l~ 521 (996)
.+|+.-|+-.++.+.+.++..||||+.||=- +.+. . .-...|..||+++++++.
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 4577788889999999999999999999943 2111 1 236789999999999984
No 83
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=45.62 E-value=68 Score=34.13 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=38.4
Q ss_pred hCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-----------ccCHHHHHHH
Q psy13135 444 KNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-----------ADDRASYVNL 512 (996)
Q Consensus 444 ~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-----------~~d~~~f~~l 512 (996)
...+..++++|+|.. + +.|++ ++..+++.|||||+|+.-.|.. ..+......+
T Consensus 51 ~~~~~p~~~qi~g~~------------~---~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~ei 114 (231)
T cd02801 51 NPEERPLIVQLGGSD------------P---ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEI 114 (231)
T ss_pred CccCCCEEEEEcCCC------------H---HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHH
Confidence 445789999999832 1 33433 3455566899999999766532 1233445566
Q ss_pred HHHHHHHH
Q psy13135 513 LKELRLAF 520 (996)
Q Consensus 513 lkeLr~~l 520 (996)
++++|++.
T Consensus 115 i~~v~~~~ 122 (231)
T cd02801 115 VRAVREAV 122 (231)
T ss_pred HHHHHHhc
Confidence 66766654
No 84
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=44.75 E-value=31 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred cCCCCCCcchhhccCC-HHHHHHHHHHHHHHHHhCCcceEEEeee
Q psy13135 455 GGWAFGSTPFKELTGN-VFRMNQFVYESIEFLREHKFNGLDVDWE 498 (996)
Q Consensus 455 GG~~~~s~~fs~~~s~-~~~r~~fi~siv~~l~~ygfDGIDIDwE 498 (996)
|-|......+.....+ +.-|+.+++.+++.+..-.||||-+|--
T Consensus 32 ~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 32 SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 4454333445445555 8999999999999999889999999843
No 85
>PRK12568 glycogen branching enzyme; Provisional
Probab=44.50 E-value=55 Score=41.26 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCcceEEEee-------eC--------CCCccCHHH--HHHHHHHHHHHHHhhh
Q psy13135 468 TGNVFRMNQFVYESIEFLREHKFNGLDVDW-------EY--------PRGADDRAS--YVNLLKELRLAFEGEA 524 (996)
Q Consensus 468 ~s~~~~r~~fi~siv~~l~~ygfDGIDIDw-------E~--------P~~~~d~~~--f~~llkeLr~~l~~~~ 524 (996)
..++..|+-+++++.-|+++|++||+-+|- .| |.....++| =..|+++|++.+++..
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~ 453 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQF 453 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 356788899999999999999999999992 11 111111222 3579999999998653
No 86
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.02 E-value=80 Score=36.34 Aligned_cols=90 Identities=16% Similarity=0.369 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEeeeC---------CCC----------ccCHHHH-HHHHHHHHHHHHhhhcccCCCce
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDWEY---------PRG----------ADDRASY-VNLLKELRLAFEGEAKTSGEPRL 532 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDwE~---------P~~----------~~d~~~f-~~llkeLr~~l~~~~~~~~~~~~ 532 (996)
-.+.|++++.. +++-|||||+|+--+ |.. .+++..| ...|+++|+++... -.+.+
T Consensus 142 ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~----~~~~~ 216 (353)
T cd04735 142 IIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH----ADKDF 216 (353)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc----cCCCc
Confidence 34567765544 566899999998632 321 1122222 24555555555310 00246
Q ss_pred EEEEeecCchhhhhcCCC-------hhhhhcc-ccEEEEeeccC
Q psy13135 533 LLTAAVPASFEAIAAGYD-------VPEISKY-LDFINVMTYDF 568 (996)
Q Consensus 533 ~Lsvavp~~~~~~~~~yd-------~~~l~~~-vD~vnvMtYD~ 568 (996)
.|.+-+.+... ...+.+ .+.|.+. +|+|+|....+
T Consensus 217 ~v~~R~s~~~~-~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 217 ILGYRFSPEEP-EEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred eEEEEECcccc-cCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 77777665321 112222 2334333 89999976543
No 87
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=40.64 E-value=1.7e+02 Score=32.79 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCc----------
Q psy13135 434 KFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA---------- 503 (996)
Q Consensus 434 ~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~---------- 503 (996)
..+.+..+++..++..+++++-|.. ++ +.|++ +++.+++.++|+|+|+.-.|...
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~-----------~~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~ 150 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEY-----------NK---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVG 150 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCC-----------CH---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc
Confidence 3445556665555677889997731 11 33443 44566778999999999988631
Q ss_pred cCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCc
Q psy13135 504 DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPAS 541 (996)
Q Consensus 504 ~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~ 541 (996)
.+.+.+..+++.+|+..+ .-+++-+++.
T Consensus 151 ~~~~~~~~iv~~v~~~~~----------~Pv~vKl~~~ 178 (299)
T cd02940 151 QDPELVEEICRWVREAVK----------IPVIAKLTPN 178 (299)
T ss_pred cCHHHHHHHHHHHHHhcC----------CCeEEECCCC
Confidence 455667777777776541 2466666653
No 88
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.61 E-value=1.1e+02 Score=35.41 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEeee
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDWE 498 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDwE 498 (996)
..+.|++.+ ..+++-|||||+|.--
T Consensus 157 ii~~f~~AA-~rA~~AGfDGVEIh~a 181 (362)
T PRK10605 157 IVNDFRQAI-ANAREAGFDLVELHSA 181 (362)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 345566644 5666789999999853
No 89
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.34 E-value=71 Score=36.14 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhCCcceEEEeee
Q psy13135 475 NQFVYESIEFLREHKFNGLDVDWE 498 (996)
Q Consensus 475 ~~fi~siv~~l~~ygfDGIDIDwE 498 (996)
+.|++.+ +.+++-|||||+|+--
T Consensus 141 ~~~~~aA-~~a~~aGfDgveih~~ 163 (327)
T cd02803 141 EDFAAAA-RRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcch
Confidence 4455544 3445679999999874
No 90
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=40.21 E-value=68 Score=37.36 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEee
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDW 497 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDw 497 (996)
.++.|++.+ ..+++-|||||+|.-
T Consensus 148 ii~~f~~AA-~ra~~AGfDgVEih~ 171 (382)
T cd02931 148 FVGKFGESA-VIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEec
Confidence 345566644 556668999999997
No 91
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=39.97 E-value=26 Score=33.37 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=54.8
Q ss_pred hhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHHHhh
Q psy13135 705 KEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG 784 (996)
Q Consensus 705 k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~ 784 (996)
-..|.-|+++-.--. |..|-.-|+..+. +=.+.+.++|++.|+++--++++|. +..+.+.|+++++|+-+.+++
T Consensus 50 l~~GaDGV~v~GC~~----geCHy~~GN~ka~-rR~~~lke~l~elgie~eRv~~~wi-Sa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 50 LRKGADGVLVAGCKI----GECHYISGNYKAK-RRMELLKELLKELGIEPERVRVLWI-SAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred HHcCCCeEEEecccc----cceeeeccchHHH-HHHHHHHHHHHHhCCCcceEEEEEE-ehhhHHHHHHHHHHHHHHHHH
Confidence 346777876633322 2333334553322 3356677888999999999999988 889999999999999999988
Q ss_pred cc
Q psy13135 785 EA 786 (996)
Q Consensus 785 ~~ 786 (996)
++
T Consensus 124 lG 125 (132)
T COG1908 124 LG 125 (132)
T ss_pred hC
Confidence 76
No 92
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.55 E-value=2.4e+02 Score=31.45 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhC--CcceEEEeeeCCCCc-------cC
Q psy13135 435 FEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREH--KFNGLDVDWEYPRGA-------DD 505 (996)
Q Consensus 435 ~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~y--gfDGIDIDwE~P~~~-------~d 505 (996)
.+.+...++.. +..++++|.|.+ + +.++ .+++.+++. ++|+|||++--|... .+
T Consensus 79 ~~~~~~~~~~~-~~pl~~qi~g~~------------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~ 141 (300)
T TIGR01037 79 LEELKPVREEF-PTPLIASVYGSS------------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQD 141 (300)
T ss_pred HHHHHHHhccC-CCcEEEEeecCC------------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccC
Confidence 34444433333 567999998732 1 2232 344455543 499999999877532 35
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChh-hhhc-cccEEEEe
Q psy13135 506 RASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVP-EISK-YLDFINVM 564 (996)
Q Consensus 506 ~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~-~l~~-~vD~vnvM 564 (996)
.+....+++++|++.. +.|++-+++..... ..+. .+.+ =+|.|.|.
T Consensus 142 ~~~~~eiv~~vr~~~~----------~pv~vKi~~~~~~~---~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 142 PELSADVVKAVKDKTD----------VPVFAKLSPNVTDI---TEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHHHHHHHhcC----------CCEEEECCCChhhH---HHHHHHHHHcCCCEEEEE
Confidence 5666777777776641 45677776532211 1111 2222 27888874
No 93
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=38.76 E-value=59 Score=40.15 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceEEE---EEcCCCCCCcchhhccCCHHHHHHHHHHHHHHH-HhCCcceEEEeeeCCCCccCHHHH
Q psy13135 434 KFEALMQLREKNPDIKILL---AIGGWAFGSTPFKELTGNVFRMNQFVYESIEFL-REHKFNGLDVDWEYPRGADDRASY 509 (996)
Q Consensus 434 ~~~~~~~lk~~np~lKvll---SIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l-~~ygfDGIDIDwE~P~~~~d~~~f 509 (996)
.+..+.+.|++||+||+.+ +.=||-.+. +..-..++.. -+.-++++| --+.--|++||+--+- .++..=
T Consensus 114 e~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g--~~~~~~~~~~---~a~Y~~~wl~ga~~~~gl~idYvg~~--NEr~~~ 186 (669)
T PF02057_consen 114 EWWLMAEAKKRNPNIKLYGLPWGFPGWVGNG--WNWPYDNPQL---TAYYVVSWLLGAKKTHGLDIDYVGIW--NERGFD 186 (669)
T ss_dssp HHHHHHHHHHH-TT-EEEEEES-B-GGGGTT--SS-TTSSHHH---HHHHHHHHHHHHHHHH-----EE-S---TTS---
T ss_pred hhhhHHHHHhhCCCCeEEEeccCCCccccCC--CCCcccchhh---hhHHHHHHHHHHHHHhCCCceEechh--hccCCC
Confidence 3556788999999999985 333444211 1111112222 122344544 2223346678877442 233333
Q ss_pred HHHHHHHHHHHHhhh
Q psy13135 510 VNLLKELRLAFEGEA 524 (996)
Q Consensus 510 ~~llkeLr~~l~~~~ 524 (996)
...++.||.+|++.+
T Consensus 187 ~~~ik~lr~~l~~~g 201 (669)
T PF02057_consen 187 VNYIKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhcc
Confidence 567899999998765
No 94
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=38.16 E-value=76 Score=36.31 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEE--cCCCCCC--------c-c------hhhccCCH---HHHHHHHHHHHHHHHhCCc
Q psy13135 431 EAGKFEALMQLREKNPDIKILLAI--GGWAFGS--------T-P------FKELTGNV---FRMNQFVYESIEFLREHKF 490 (996)
Q Consensus 431 ~~~~~~~~~~lk~~np~lKvllSI--GG~~~~s--------~-~------fs~~~s~~---~~r~~fi~siv~~l~~ygf 490 (996)
....++++...-+++ +.|+++-| +|..... . . ....++.+ ...+.|++.+ ..+++-||
T Consensus 79 ~i~~~r~l~d~vh~~-G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGf 156 (337)
T PRK13523 79 HIEGLHKLVTFIHDH-GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGF 156 (337)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 345566666655555 88888776 2322100 0 0 00112211 3345677644 55566799
Q ss_pred ceEEEeee
Q psy13135 491 NGLDVDWE 498 (996)
Q Consensus 491 DGIDIDwE 498 (996)
|||+|+--
T Consensus 157 DgVeih~a 164 (337)
T PRK13523 157 DVIEIHGA 164 (337)
T ss_pred CEEEEccc
Confidence 99999875
No 95
>PLN02411 12-oxophytodienoate reductase
Probab=37.95 E-value=71 Score=37.35 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeee
Q psy13135 474 MNQFVYESIEFLREHKFNGLDVDWE 498 (996)
Q Consensus 474 r~~fi~siv~~l~~ygfDGIDIDwE 498 (996)
.+.|++.+ ..+++-|||||+|.--
T Consensus 164 i~~f~~AA-~rA~~AGFDGVEIH~A 187 (391)
T PLN02411 164 VEHYRQAA-LNAIRAGFDGIEIHGA 187 (391)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccc
Confidence 35566644 4555689999999864
No 96
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.81 E-value=93 Score=35.49 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEee
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDW 497 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDw 497 (996)
..+.|++.+.. +++-|||||+|+-
T Consensus 152 ii~~~~~aA~~-a~~aGfDgVei~~ 175 (336)
T cd02932 152 VVDAFVAAARR-AVEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEcc
Confidence 34556665544 4557999999985
No 97
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.60 E-value=1.3e+02 Score=34.58 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEee
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDW 497 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDw 497 (996)
..+.|++.+. .+++-|||||+|+-
T Consensus 139 ii~~f~~AA~-ra~~aGfDgVeih~ 162 (343)
T cd04734 139 IIAAFADAAR-RCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEcc
Confidence 4456776554 55668999999998
No 98
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=36.47 E-value=31 Score=42.01 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=37.8
Q ss_pred ccccccchhhhhhHHHhhhcccccccccc-CCCC------C--c-cChHHHHHHHHHHHHHHh
Q psy13135 731 GNVFRMNQFVYESIEFLREHKFNGLDVDW-EYPR------G--A-DDRASYVNLLKELRLAFE 783 (996)
Q Consensus 731 ~~~~~r~~~i~siv~~l~~~~~DGvdiDw-E~p~------~--~-~d~~~~~~fl~elr~~l~ 783 (996)
+++.=|+.++++..+.++..||||+.||= -.++ + . .=...|..||+++++++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 45566888999999999999999999993 2221 1 1 337889999999999993
No 99
>PRK12313 glycogen branching enzyme; Provisional
Probab=36.15 E-value=78 Score=39.56 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEeee-------------C-CC---CccCHHHHHHHHHHHHHHHHhhh
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVDWE-------------Y-PR---GADDRASYVNLLKELRLAFEGEA 524 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDIDwE-------------~-P~---~~~d~~~f~~llkeLr~~l~~~~ 524 (996)
.++..|+-+++++.-|+++|++||+-||-- + |. ...+. .=..|++++++.+++..
T Consensus 282 ~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~ 353 (633)
T PRK12313 282 GKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEH 353 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHC
Confidence 478888899999999999999999999921 0 10 01111 23679999999987653
No 100
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=35.72 E-value=1.8e+02 Score=38.69 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHh
Q psy13135 470 NVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG 522 (996)
Q Consensus 470 ~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~ 522 (996)
++..|+-+++++.-|+++|++||+-||--. .-+.. ++++++.++++
T Consensus 616 ~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g---~~d~~----~~~~~~~~l~~ 661 (1111)
T TIGR02102 616 HEMSRRILVDSIKYLVDEFKVDGFRFDMMG---DHDAA----SIEIAYKEAKA 661 (1111)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEeccc---cCCHH----HHHHHHHHHHH
Confidence 467788889999999999999999999651 22333 44555555543
No 101
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=35.22 E-value=2.4e+02 Score=34.19 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCceEEEEEc---CCCCCCcch---hhcc--CCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC---
Q psy13135 434 KFEALMQLREKNPDIKILLAIG---GWAFGSTPF---KELT--GNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--- 502 (996)
Q Consensus 434 ~~~~~~~lk~~np~lKvllSIG---G~~~~s~~f---s~~~--s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~--- 502 (996)
.+..+.++++.+|++|++.|-- +|--....+ ..+. ..+..++.+++=+++|++.|.=-||+|+---+..
T Consensus 155 ~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 3566777778889999998761 121001001 1111 1346779999999999999988899986532221
Q ss_pred ------------ccCHHHHHHHHHH-HHHHHHhhhcccCCCceEEEEeecCc--hhhhhcCCChhhhhccccEEEEeecc
Q psy13135 503 ------------ADDRASYVNLLKE-LRLAFEGEAKTSGEPRLLLTAAVPAS--FEAIAAGYDVPEISKYLDFINVMTYD 567 (996)
Q Consensus 503 ------------~~d~~~f~~llke-Lr~~l~~~~~~~~~~~~~Lsvavp~~--~~~~~~~yd~~~l~~~vD~vnvMtYD 567 (996)
.=..+....||+. |+-+|++.+.. ..-.++...-... +.....-+.-++..+++|-+-+..|.
T Consensus 235 ~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~ 312 (496)
T PF02055_consen 235 NGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYG 312 (496)
T ss_dssp GGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETT
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCC
Confidence 0123445778876 99999876431 1123444332110 11111112234567788988888885
No 102
>PRK12568 glycogen branching enzyme; Provisional
Probab=35.07 E-value=39 Score=42.58 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=42.4
Q ss_pred cccccccchhhhhhHHHhhhcccccccccc--------------CCC-CCccChHHH--HHHHHHHHHHHhhcc
Q psy13135 730 TGNVFRMNQFVYESIEFLREHKFNGLDVDW--------------EYP-RGADDRASY--VNLLKELRLAFEGEA 786 (996)
Q Consensus 730 c~~~~~r~~~i~siv~~l~~~~~DGvdiDw--------------E~p-~~~~d~~~~--~~fl~elr~~l~~~~ 786 (996)
.++++.|+-+++++.-.++++++||+-+|- ||. .....++|+ ..|+++|++.+++..
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~ 453 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQF 453 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999992 221 111122333 579999999998653
No 103
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.12 E-value=2.4e+02 Score=32.60 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeeeC---------CCC-------ccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEe
Q psy13135 474 MNQFVYESIEFLREHKFNGLDVDWEY---------PRG-------ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAA 537 (996)
Q Consensus 474 r~~fi~siv~~l~~ygfDGIDIDwE~---------P~~-------~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsva 537 (996)
.+.|++.+ ..+++-|||||+|.--+ |.. ....+|=..|+.|+-+++++.- | +.+.|.+-
T Consensus 143 i~~f~~AA-~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v---G-~d~~v~vR 217 (361)
T cd04747 143 IAAFARAA-ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV---G-PDFPIILR 217 (361)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc---C-CCCeEEEE
Confidence 35566644 45566799999999765 432 1133444556666655555432 1 24667777
Q ss_pred ecC
Q psy13135 538 VPA 540 (996)
Q Consensus 538 vp~ 540 (996)
+.+
T Consensus 218 is~ 220 (361)
T cd04747 218 FSQ 220 (361)
T ss_pred ECc
Confidence 764
No 104
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.60 E-value=2.1e+02 Score=32.65 Aligned_cols=71 Identities=14% Similarity=0.303 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCcc------CH
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGAD------DR 506 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~------d~ 506 (996)
...+.+..++++. ++.++++|+|.+ . ..+ ..++..+++.|+|+|+|++-.|.... ..
T Consensus 88 ~~~~~i~~~~~~~-~~pvi~sI~g~~--~-------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~ 150 (334)
T PRK07565 88 EYLELIRRAKEAV-DIPVIASLNGSS--A-------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGAEVE 150 (334)
T ss_pred HHHHHHHHHHHhc-CCcEEEEeccCC--H-------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH
Confidence 3445555555543 689999998833 1 122 23555667779999999987643211 11
Q ss_pred HHHHHHHHHHHHHH
Q psy13135 507 ASYVNLLKELRLAF 520 (996)
Q Consensus 507 ~~f~~llkeLr~~l 520 (996)
+.+..+++++++..
T Consensus 151 ~~~~eil~~v~~~~ 164 (334)
T PRK07565 151 QRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHhcc
Confidence 33556667776554
No 105
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=32.45 E-value=1.5e+02 Score=33.43 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-----------ccCHHHHHHHHHH
Q psy13135 447 DIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-----------ADDRASYVNLLKE 515 (996)
Q Consensus 447 ~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-----------~~d~~~f~~llke 515 (996)
...+.+.|.|.+ + +.|++.+ ..+.+.|||||||+.--|.. ..+......++++
T Consensus 62 e~p~~vQl~g~~------------p---~~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~a 125 (312)
T PRK10550 62 GTLVRIQLLGQY------------P---QWLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 (312)
T ss_pred CCcEEEEeccCC------------H---HHHHHHH-HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHH
Confidence 456888888732 2 3444433 34566799999999988752 1344555666666
Q ss_pred HHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhh-hhcc-ccEEEEe
Q psy13135 516 LRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPE-ISKY-LDFINVM 564 (996)
Q Consensus 516 Lr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~-l~~~-vD~vnvM 564 (996)
+|+++.. ++-||+-+...........++.. +.+. +|.+.|.
T Consensus 126 vr~~~~~--------~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 126 MREAVPA--------HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHhcCC--------CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 6665521 24577766553221111112222 2222 7888773
No 106
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=32.33 E-value=1.1e+02 Score=35.64 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCCcceEEEeeeC
Q psy13135 473 RMNQFVYESIEFLREHKFNGLDVDWEY 499 (996)
Q Consensus 473 ~r~~fi~siv~~l~~ygfDGIDIDwE~ 499 (996)
..+.|++.+ ..+++-|||||+|+--+
T Consensus 148 ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 148 VRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 345677654 45566799999998765
No 107
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=31.09 E-value=87 Score=35.85 Aligned_cols=78 Identities=10% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCceEEEEE-------cCCCCCCcchhhccC-CHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-ccCHH
Q psy13135 437 ALMQLREKNPDIKILLAI-------GGWAFGSTPFKELTG-NVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-ADDRA 507 (996)
Q Consensus 437 ~~~~lk~~np~lKvllSI-------GG~~~~s~~fs~~~s-~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-~~d~~ 507 (996)
.++...++| ++.|+=.| || ..+.+..|+. +++-.=.|++.+++..+-|||||--|+=|--+. +++.+
T Consensus 131 DVIDaaHrN-GVPvlGt~Ffppk~ygg---~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~ 206 (553)
T COG4724 131 DVIDAAHRN-GVPVLGTLFFPPKNYGG---DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAE 206 (553)
T ss_pred hhhhhhhcC-CCceeeeeecChhhcCc---hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHH
Confidence 345556667 88888544 33 2345665553 444445688999999999999999999884432 45566
Q ss_pred HHHHHHHHHHH
Q psy13135 508 SYVNLLKELRL 518 (996)
Q Consensus 508 ~f~~llkeLr~ 518 (996)
++..||..+++
T Consensus 207 ~M~~f~ly~ke 217 (553)
T COG4724 207 KMRQFMLYSKE 217 (553)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 108
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.14 E-value=3e+02 Score=30.76 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHh--CCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhC--CcceEEEeeeCCCC------
Q psy13135 433 GKFEALMQLREK--NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREH--KFNGLDVDWEYPRG------ 502 (996)
Q Consensus 433 ~~~~~~~~lk~~--np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~y--gfDGIDIDwE~P~~------ 502 (996)
..++.+..++++ .++..+++||+|. . +.+++.+..+.+.. ++|+|||+.-.|..
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~---~-------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~ 138 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS---A-------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPP 138 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC---H-------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccc
Confidence 345555555543 2467888999862 1 23343333333323 69999999998863
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCc
Q psy13135 503 ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPAS 541 (996)
Q Consensus 503 ~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~ 541 (996)
..+.+.+..+++.+|++.. .-+++-+++.
T Consensus 139 ~~~~~~~~~i~~~v~~~~~----------iPv~vKl~p~ 167 (294)
T cd04741 139 AYDFDATLEYLTAVKAAYS----------IPVGVKTPPY 167 (294)
T ss_pred cCCHHHHHHHHHHHHHhcC----------CCEEEEeCCC
Confidence 2356677777777777652 2366666664
No 109
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=29.99 E-value=1.6e+02 Score=36.90 Aligned_cols=130 Identities=9% Similarity=0.040 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHH-HHHHhCCcceEEEeeeCCCCc-------------------------cC-----------HHHHHHH
Q psy13135 470 NVFRMNQFVYESI-EFLREHKFNGLDVDWEYPRGA-------------------------DD-----------RASYVNL 512 (996)
Q Consensus 470 ~~~~r~~fi~siv-~~l~~ygfDGIDIDwE~P~~~-------------------------~d-----------~~~f~~l 512 (996)
+++.| ++|.+|+ ++++.|.||||-||=.--.+. .+ ...+..|
T Consensus 439 ~pe~r-~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f 517 (671)
T PRK14582 439 DDRVR-AQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDF 517 (671)
T ss_pred CHHHH-HHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 45565 4555555 455567999999986522100 01 1234678
Q ss_pred HHHHHHHHHhhhcccCCCceEEEE------eecCchhhhhcCCChhhhhccccEEEEeeccCCCCCCCCcCCCCCCCCCC
Q psy13135 513 LKELRLAFEGEAKTSGEPRLLLTA------AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLE 586 (996)
Q Consensus 513 lkeLr~~l~~~~~~~~~~~~~Lsv------avp~~~~~~~~~yd~~~l~~~vD~vnvMtYD~~g~w~~~~g~~sPL~~~~ 586 (996)
-.+|++..++... |.+...- .+.+..+.+. +-++..+.+..||+.+|+.-|... .
T Consensus 518 ~~~l~~~v~~~~~----~~~~tarni~a~~~l~p~~e~w~-aQ~l~~~~~~yD~~a~mampyme~---~----------- 578 (671)
T PRK14582 518 TLELSARVKAIRG----PQVKTARNIFALPVIQPESEAWF-AQNLDDFLKSYDWTAPMAMPLMEG---V----------- 578 (671)
T ss_pred HHHHHHHHHhhcC----ccceeeccccccccCChhHHHHH-HhHHHHHHhhcchhhhhcchhhhc---c-----------
Confidence 8888888876421 1122211 1112222222 357888889999999999665432 0
Q ss_pred CCccccccccHHHHHHHHHHcCCCCCCeeeccccc
Q psy13135 587 GATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTY 621 (996)
Q Consensus 587 ~~~~~~~~~~v~~~v~~~l~~Gvp~~KLvLGlp~Y 621 (996)
.......++...++...+.-...+|+|+-+...
T Consensus 579 --~~~~~~~wl~~l~~~v~~~~~~~~k~vfelq~~ 611 (671)
T PRK14582 579 --AEKSSDAWLIQLVNQVKNIPGALDKTIFELQAR 611 (671)
T ss_pred --CcccHHHHHHHHHHHHHhcCCcccceEEEeecc
Confidence 000112356666666655556779999887644
No 110
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=29.69 E-value=6.1e+02 Score=25.78 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHH----HHHHHHHHHHHHhC-CcceEEEeeeCCCCccCH
Q psy13135 432 AGKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRM----NQFVYESIEFLREH-KFNGLDVDWEYPRGADDR 506 (996)
Q Consensus 432 ~~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r----~~fi~siv~~l~~y-gfDGIDIDwE~P~~~~d~ 506 (996)
...++.+.++..++ |+||+++++-+ +.-|.. .+.+.. +..++.+.+.-..+ .|.|-=|-.|.....
T Consensus 64 ~d~l~~~L~~A~~~-Gmkv~~Gl~~~---~~~w~~--~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~--- 134 (166)
T PF14488_consen 64 VDLLEMILDAADKY-GMKVFVGLYFD---PDYWDQ--GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN--- 134 (166)
T ss_pred ccHHHHHHHHHHHc-CCEEEEeCCCC---chhhhc--cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---
Confidence 35677888888777 99999999853 233332 443333 23344444422222 499999999943221
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy13135 507 ASYVNLLKELRLAFEGE 523 (996)
Q Consensus 507 ~~f~~llkeLr~~l~~~ 523 (996)
.+-..+++.|+..+++.
T Consensus 135 ~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 135 WNAPERFALLGKYLKQI 151 (166)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 22245556666666554
No 111
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=29.10 E-value=2.6e+02 Score=31.51 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCC-cceEEEeeeCCCC------ccC
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHK-FNGLDVDWEYPRG------ADD 505 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~yg-fDGIDIDwE~P~~------~~d 505 (996)
...+.+..+++..++..+++||-|.+ . ..|+ .+++.+++.+ .|.|+|+.-.|.. ..|
T Consensus 78 ~~~~~i~~~~~~~~~~pvI~Si~G~~--~-------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d 141 (310)
T PRK02506 78 YYLDYVLELQKKGPNKPHFLSVVGLS--P-------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIAYD 141 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCc--H-------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccccC
Confidence 44556666666555788999997744 1 1222 2344456777 8999999998842 124
Q ss_pred HHHHHHHHHHHHHHH
Q psy13135 506 RASYVNLLKELRLAF 520 (996)
Q Consensus 506 ~~~f~~llkeLr~~l 520 (996)
.+.+..+++.+|++.
T Consensus 142 ~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 142 FETTEQILEEVFTYF 156 (310)
T ss_pred HHHHHHHHHHHHHhc
Confidence 556677777777654
No 112
>PRK14706 glycogen branching enzyme; Provisional
Probab=28.98 E-value=1.7e+02 Score=36.58 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEeee-C------------CCC--ccCHHHHHHHHHHHHHHHHhh
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVDWE-Y------------PRG--ADDRASYVNLLKELRLAFEGE 523 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDIDwE-~------------P~~--~~d~~~f~~llkeLr~~l~~~ 523 (996)
.++..|+-++.++.-|++++++||+-||=- . |.. ......=..||++|++.++..
T Consensus 279 ~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 279 GRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 578888899999999999999999999942 1 100 011122357899999988765
No 113
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=28.36 E-value=1.1e+02 Score=35.37 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeeeC---------CCC-------ccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEe
Q psy13135 474 MNQFVYESIEFLREHKFNGLDVDWEY---------PRG-------ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAA 537 (996)
Q Consensus 474 r~~fi~siv~~l~~ygfDGIDIDwE~---------P~~-------~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsva 537 (996)
++.|++.. ...++-|||||+|.=-+ |.. ....+|=..|+.|+-++.++.-. +.+.|.+-
T Consensus 148 i~~f~~AA-~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg----~~~~vg~R 222 (363)
T COG1902 148 IEDFARAA-RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVG----ADFPVGVR 222 (363)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhC----CCceEEEE
Confidence 34555544 44555899999998642 211 01234444555555444443321 23467777
Q ss_pred ecCchhhhhcCCChh-------hhhcc--ccEEEEeeccC
Q psy13135 538 VPASFEAIAAGYDVP-------EISKY--LDFINVMTYDF 568 (996)
Q Consensus 538 vp~~~~~~~~~yd~~-------~l~~~--vD~vnvMtYD~ 568 (996)
+++.......++++. .|.+. +|++++..-+.
T Consensus 223 ls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 223 LSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred ECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 776543122244432 33333 68888877443
No 114
>PRK05402 glycogen branching enzyme; Provisional
Probab=28.27 E-value=1.4e+02 Score=38.07 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCcceEEEeee-C--------------CC--CccCHHHHHHHHHHHHHHHHhh
Q psy13135 468 TGNVFRMNQFVYESIEFLREHKFNGLDVDWE-Y--------------PR--GADDRASYVNLLKELRLAFEGE 523 (996)
Q Consensus 468 ~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE-~--------------P~--~~~d~~~f~~llkeLr~~l~~~ 523 (996)
..++..|+-+++++.-||++|++||+-||-- . |. ...+...-..|+++|++.+++.
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 3577888889999999999999999999931 0 11 0011123467999999998765
No 115
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=27.77 E-value=1.8e+02 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCcceEEEeee
Q psy13135 475 NQFVYESIEFLREHKFNGLDVDWE 498 (996)
Q Consensus 475 ~~fi~siv~~l~~ygfDGIDIDwE 498 (996)
+.|++.+. .+++-|||||+|+--
T Consensus 149 ~~f~~AA~-~A~~AGfDGVEIH~a 171 (341)
T PF00724_consen 149 EDFAQAAR-RAKEAGFDGVEIHAA 171 (341)
T ss_dssp HHHHHHHH-HHHHTT-SEEEEEES
T ss_pred HHHHHHHH-HHHHhccCeEeeccc
Confidence 45555444 455579999999875
No 116
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=27.17 E-value=1.5e+02 Score=36.94 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEeee-C--------------CCC---ccCHHHHHHHHHHHHHHHHhhh
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVDWE-Y--------------PRG---ADDRASYVNLLKELRLAFEGEA 524 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDIDwE-~--------------P~~---~~d~~~f~~llkeLr~~l~~~~ 524 (996)
.++..|+-+++++.-|+++|++||+-||-- . |.. ..+ ..=..|++++++.+++..
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~v~~~~ 340 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGREN-LEAVDFLRKLNQTVYEAF 340 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCC-hHHHHHHHHHHHHHHHHC
Confidence 578888999999999999999999999952 1 000 001 122568999999887653
No 117
>PLN02960 alpha-amylase
Probab=26.89 E-value=1.6e+02 Score=37.84 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCcceEEEee-------------------eCCCCccCHHHHHHHHHHHHHHHHhh
Q psy13135 468 TGNVFRMNQFVYESIEFLREHKFNGLDVDW-------------------EYPRGADDRASYVNLLKELRLAFEGE 523 (996)
Q Consensus 468 ~s~~~~r~~fi~siv~~l~~ygfDGIDIDw-------------------E~P~~~~d~~~f~~llkeLr~~l~~~ 523 (996)
..++..|+-++.++.-||++|++||+-||= ++|....+ ..-..||++|.+.++..
T Consensus 528 y~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d-~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 528 YGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVD-RDALIYLILANEMLHQL 601 (897)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCC-chHHHHHHHHHHHHHhh
Confidence 356788888999999999999999999982 12322222 23567888888888754
No 118
>PLN02877 alpha-amylase/limit dextrinase
Probab=26.38 E-value=3e+02 Score=35.97 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeeeC
Q psy13135 471 VFRMNQFVYESIEFLREHKFNGLDVDWEY 499 (996)
Q Consensus 471 ~~~r~~fi~siv~~l~~ygfDGIDIDwE~ 499 (996)
+..|+-+++++.-|+++|++||.-||--.
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 55667789999999999999999999874
No 119
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.35 E-value=1.4e+02 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhcCCChhhhhccccE
Q psy13135 481 SIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDF 560 (996)
Q Consensus 481 iv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~~yd~~~l~~~vD~ 560 (996)
.++.+.+.|.|-|-+.+|- . .....+++.+|+. + ....+++-+... . -.+..+.+.+|+
T Consensus 72 ~i~~~~~~g~~~i~~H~E~---~---~~~~~~i~~ik~~----g-------~k~GialnP~T~-~---~~~~~~l~~vD~ 130 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAEA---T---EDPKETIKYIKEA----G-------IKAGIALNPETP-V---EELEPYLDQVDM 130 (201)
T ss_dssp HHHHHHHHT-SEEEEEGGG---T---TTHHHHHHHHHHT----T-------SEEEEEE-TTS--G---GGGTTTGCCSSE
T ss_pred HHHHHHhcCCCEEEEcccc---h---hCHHHHHHHHHHh----C-------CCEEEEEECCCC-c---hHHHHHhhhcCE
Confidence 3455566799999999991 1 2344556666653 2 345566555321 1 124567778999
Q ss_pred EEEeecc
Q psy13135 561 INVMTYD 567 (996)
Q Consensus 561 vnvMtYD 567 (996)
|.||+-+
T Consensus 131 VlvMsV~ 137 (201)
T PF00834_consen 131 VLVMSVE 137 (201)
T ss_dssp EEEESS-
T ss_pred EEEEEec
Confidence 9999976
No 120
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=26.24 E-value=1.8e+02 Score=36.17 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCCccCHHHHHHHHHHHHHHHHhh
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGE 523 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~~~d~~~f~~llkeLr~~l~~~ 523 (996)
.++..|+-+++++.-|+++|++||+-||--.- -+ ..|++++++++++.
T Consensus 292 ~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~---~~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 292 EREMMRKFIVDSVLYWVKEYNIDGFRFDLMGI---HD----IETMNEIRKALNKI 339 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEechhc---CC----HHHHHHHHHHHHhh
Confidence 36778888899999999999999999996521 12 23678888887654
No 121
>PRK14706 glycogen branching enzyme; Provisional
Probab=25.80 E-value=69 Score=39.99 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred cccccccchhhhhhHHHhhhcccccccccc-CCCC---------------CccChHHHHHHHHHHHHHHhhcc
Q psy13135 730 TGNVFRMNQFVYESIEFLREHKFNGLDVDW-EYPR---------------GADDRASYVNLLKELRLAFEGEA 786 (996)
Q Consensus 730 c~~~~~r~~~i~siv~~l~~~~~DGvdiDw-E~p~---------------~~~d~~~~~~fl~elr~~l~~~~ 786 (996)
+++++.|+-+++++.-.++++++||+-+|= .... +.++ ..=..||++|++.+++..
T Consensus 278 ~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n-~~a~~fl~~ln~~v~~~~ 349 (639)
T PRK14706 278 YGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGREN-LEAIAFLKRLNEVTHHMA 349 (639)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCccc-HHHHHHHHHHHHHHHHhC
Confidence 467888999999999999999999999993 2210 1111 123569999999998653
No 122
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.31 E-value=2.3e+02 Score=32.17 Aligned_cols=60 Identities=12% Similarity=0.285 Sum_probs=40.2
Q ss_pred CCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-----------ccCHHHHHHHH
Q psy13135 445 NPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-----------ADDRASYVNLL 513 (996)
Q Consensus 445 np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-----------~~d~~~f~~ll 513 (996)
.....+.+.|+|.+ + +.|+ .++..+.++|||||||+.--|.. ..+.+....++
T Consensus 52 ~~e~p~~vQl~g~~------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 52 PEESPVALQLGGSD------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred CCCCcEEEEEccCC------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 34667889998833 1 2333 34566777899999999987752 13555566777
Q ss_pred HHHHHHH
Q psy13135 514 KELRLAF 520 (996)
Q Consensus 514 keLr~~l 520 (996)
+++++++
T Consensus 116 ~av~~~~ 122 (318)
T TIGR00742 116 KAMQEAV 122 (318)
T ss_pred HHHHHHh
Confidence 7777765
No 123
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=25.29 E-value=1.9e+02 Score=31.71 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCC-ceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEE
Q psy13135 436 EALMQLREKNPD-IKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDV 495 (996)
Q Consensus 436 ~~~~~lk~~np~-lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDI 495 (996)
+++..++...+. ..+++.=-||-.+...+-......+..+.|+++++.-|+..|+|=+.|
T Consensus 219 ~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 219 EQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 455555555544 677788889976666677788888899999999999999999876655
No 124
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=24.90 E-value=2.5e+02 Score=32.63 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC--------------ccCHHHHHHHHHHHHHHHHhhhc
Q psy13135 471 VFRMNQFVYESIEFLREHKFNGLDVDWEYPRG--------------ADDRASYVNLLKELRLAFEGEAK 525 (996)
Q Consensus 471 ~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~--------------~~d~~~f~~llkeLr~~l~~~~~ 525 (996)
+..++.|+.=+++.++.+.=.||.|+.--|.. .-+.+....||++|+.+|.+.+.
T Consensus 150 ~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL 218 (384)
T PF14587_consen 150 PDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGL 218 (384)
T ss_dssp TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 34678888888888887766899998865532 12456778999999999998874
No 125
>PRK12313 glycogen branching enzyme; Provisional
Probab=24.52 E-value=67 Score=40.11 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=40.3
Q ss_pred cccccccchhhhhhHHHhhhccccccccccC-------------C-C---CCccChHHHHHHHHHHHHHHhhcc
Q psy13135 730 TGNVFRMNQFVYESIEFLREHKFNGLDVDWE-------------Y-P---RGADDRASYVNLLKELRLAFEGEA 786 (996)
Q Consensus 730 c~~~~~r~~~i~siv~~l~~~~~DGvdiDwE-------------~-p---~~~~d~~~~~~fl~elr~~l~~~~ 786 (996)
.++++.|+.+++++.-+++++++||+-+|-- + | ++..+. .=..|++++++.+++..
T Consensus 281 ~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~ 353 (633)
T PRK12313 281 LGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEH 353 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999921 0 0 011111 12679999999998653
No 126
>KOG4701|consensus
Probab=24.12 E-value=73 Score=36.21 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=44.6
Q ss_pred cccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeEEEecCCCHH--HHhcCCChhhhhccccEEEcccc
Q psy13135 751 KFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFE--AIAAGYDVPEISKYLDFINVMTY 828 (996)
Q Consensus 751 ~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~lt~avp~~~~--~~~~~~d~~~l~~~vD~inlMtY 828 (996)
-+||+|+|.|.- .-..|..|-+.||+.|... +++|.|+.|...... .+.... -.+-.||+-|.-|
T Consensus 150 VvDGfDF~IE~g----~~~~ysaLA~~L~~~Fa~~-----~r~yYLsaAPQCP~PD~~~G~aL----~~~~fDf~~IQFY 216 (568)
T KOG4701|consen 150 VVDGFDFEIEKG----TNTAYSALAKRLLEIFASD-----PRRYYLSAAPQCPVPDHTLGKAL----SENSFDFLSIQFY 216 (568)
T ss_pred hccceeeeeecC----CcchHHHHHHHHHHHHccC-----CceEEeccCCCCCCCchhhhhhh----hccccceEEEEee
Confidence 379999999954 2346788999999999643 467888888654221 111111 1245788899888
Q ss_pred cc
Q psy13135 829 DF 830 (996)
Q Consensus 829 D~ 830 (996)
.-
T Consensus 217 NN 218 (568)
T KOG4701|consen 217 NN 218 (568)
T ss_pred cC
Confidence 64
No 127
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=21.88 E-value=2.1e+02 Score=32.68 Aligned_cols=58 Identities=10% Similarity=0.267 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-----------ccCHHHHHHHHHH
Q psy13135 447 DIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-----------ADDRASYVNLLKE 515 (996)
Q Consensus 447 ~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-----------~~d~~~f~~llke 515 (996)
...+.+.|+|.+ + +.|++ ++..+++.|||||||+.--|.. ..+......++++
T Consensus 64 e~p~~vQl~g~~------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~a 127 (333)
T PRK11815 64 EHPVALQLGGSD------------P---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKA 127 (333)
T ss_pred CCcEEEEEeCCC------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHH
Confidence 567889998833 2 33443 4567788999999999987742 1234444556666
Q ss_pred HHHHH
Q psy13135 516 LRLAF 520 (996)
Q Consensus 516 Lr~~l 520 (996)
+|+++
T Consensus 128 vr~~v 132 (333)
T PRK11815 128 MKDAV 132 (333)
T ss_pred HHHHc
Confidence 66554
No 128
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=21.57 E-value=4.6e+02 Score=29.76 Aligned_cols=71 Identities=13% Similarity=0.264 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCCCCcchhhccCCHHHHHHHHHHHHHHHHhCCcceEEEeeeCCCC-cc-----CH
Q psy13135 433 GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-AD-----DR 506 (996)
Q Consensus 433 ~~~~~~~~lk~~np~lKvllSIGG~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~ygfDGIDIDwE~P~~-~~-----d~ 506 (996)
.+.+.+..++++ .+..|+++|.|.+ . +.| ..++..+++.++|+|+|+.-.|.. +. ..
T Consensus 86 ~~~~~i~~~~~~-~~~pvi~si~g~~--~-------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~ 148 (325)
T cd04739 86 EYLELIRRAKRA-VSIPVIASLNGVS--A-------------GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVE 148 (325)
T ss_pred HHHHHHHHHHhc-cCCeEEEEeCCCC--H-------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHH
Confidence 344555555543 3678999997622 1 222 234556677789999999976421 11 11
Q ss_pred HHHHHHHHHHHHHH
Q psy13135 507 ASYVNLLKELRLAF 520 (996)
Q Consensus 507 ~~f~~llkeLr~~l 520 (996)
+.+..+++.+|++.
T Consensus 149 ~~~~eiv~~v~~~~ 162 (325)
T cd04739 149 QRYLDILRAVKSAV 162 (325)
T ss_pred HHHHHHHHHHHhcc
Confidence 33455666666554
No 129
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.51 E-value=1.3e+02 Score=33.37 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=56.7
Q ss_pred chhhhhchhhhhcCCcceeeeeccCCCCCCccccccccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHH
Q psy13135 695 RSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNL 774 (996)
Q Consensus 695 ~Sl~~K~~~~k~~~lgGi~vW~l~~Dd~sg~f~~lc~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~f 774 (996)
..|++-++|++++|+ |+.+|.-..... . ...-+++ .+.+.+.+++.|+.||-|||=.- |.+..+.+
T Consensus 73 ~dl~elv~Ya~~KgV-gi~lw~~~~~~~--~------~~~~~~~-~~~~f~~~~~~Gv~GvKidF~~~----d~Q~~v~~ 138 (273)
T PF10566_consen 73 FDLPELVDYAKEKGV-GIWLWYHSETGG--N------VANLEKQ-LDEAFKLYAKWGVKGVKIDFMDR----DDQEMVNW 138 (273)
T ss_dssp --HHHHHHHHHHTT--EEEEEEECCHTT--B------HHHHHCC-HHHHHHHHHHCTEEEEEEE--SS----TSHHHHHH
T ss_pred cCHHHHHHHHHHcCC-CEEEEEeCCcch--h------hHhHHHH-HHHHHHHHHHcCCCEEeeCcCCC----CCHHHHHH
Confidence 457788899999998 667887653321 1 0112223 48999999999999999999733 44455555
Q ss_pred HHHHHHHHhhcccccCCCceeEEEecCCCHHHHhcCCChhhhhccccEEEccccc
Q psy13135 775 LKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829 (996)
Q Consensus 775 l~elr~~l~~~~~~~~~~~~~lt~avp~~~~~~~~~~d~~~l~~~vD~inlMtYD 829 (996)
.+.+-+.-. +.+++|..-=+..+..+... ++ |+||+.
T Consensus 139 y~~i~~~AA-------~~~LmvnfHg~~kPtG~~RT--yP---------N~mT~E 175 (273)
T PF10566_consen 139 YEDILEDAA-------EYKLMVNFHGATKPTGLRRT--YP---------NLMTRE 175 (273)
T ss_dssp HHHHHHHHH-------HTT-EEEETTS---TTHHHC--ST---------TEEEE-
T ss_pred HHHHHHHHH-------HcCcEEEecCCcCCCccccc--Cc---------cHHHHH
Confidence 544444332 24455555433333233222 33 788876
No 130
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.19 E-value=4.1e+02 Score=28.62 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEcC---CCCCCcchhhccCCHHHHHHHHHHHHHHHHhC----CcceEEEeeeCCCCcc
Q psy13135 432 AGKFEALMQLREKNPDIKILLAIGG---WAFGSTPFKELTGNVFRMNQFVYESIEFLREH----KFNGLDVDWEYPRGAD 504 (996)
Q Consensus 432 ~~~~~~~~~lk~~np~lKvllSIGG---~~~~s~~fs~~~s~~~~r~~fi~siv~~l~~y----gfDGIDIDwE~P~~~~ 504 (996)
...+++++++.+++ +++|+|.+-+ |..+...+. ......+.|.+-+..+.+.| .+-|++|==| |....
T Consensus 61 ~~~ld~~v~~a~~~-gi~vild~h~~~~w~~~~~~~~---~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~~~~ 135 (281)
T PF00150_consen 61 LARLDRIVDAAQAY-GIYVILDLHNAPGWANGGDGYG---NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNE-PNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHT-T-EEEEEEEESTTCSSSTSTTT---THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS-GCSTT
T ss_pred HHHHHHHHHHHHhC-CCeEEEEeccCccccccccccc---cchhhHHHHHhhhhhhccccCCCCcEEEEEecCC-ccccC
Confidence 34556666666665 9999998854 532221111 12222223333233344444 4456555333 44321
Q ss_pred --------CHHHHHHHHHHHHHHHHhhhcccCCCceEEEEeecCchhhhhc-CCChhhhhccccEEEEeecc
Q psy13135 505 --------DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAA-GYDVPEISKYLDFINVMTYD 567 (996)
Q Consensus 505 --------d~~~f~~llkeLr~~l~~~~~~~~~~~~~Lsvavp~~~~~~~~-~yd~~~l~~~vD~vnvMtYD 567 (996)
....+..+++++.+++++.+. ..++.+.-+........ ..+.+......+.+.+..|+
T Consensus 136 ~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~-----~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~ 202 (281)
T PF00150_consen 136 DDANWNAQNPADWQDWYQRAIDAIRAADP-----NHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYD 202 (281)
T ss_dssp STTTTSHHHTHHHHHHHHHHHHHHHHTTS-----SSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEET
T ss_pred CccccccccchhhhhHHHHHHHHHHhcCC-----cceeecCCCccccccchhhhcCcccccCceeEEeeEeC
Confidence 126677888888888877653 23444433211111100 01122223456677777776
No 131
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.97 E-value=1.1e+02 Score=34.66 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.7
Q ss_pred HhhhccccccccccC
Q psy13135 746 FLREHKFNGLDVDWE 760 (996)
Q Consensus 746 ~l~~~~~DGvdiDwE 760 (996)
.+++-|||||+|.--
T Consensus 149 ~a~~aGfDgveih~~ 163 (327)
T cd02803 149 RAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHcCCCEEEEcch
Confidence 445689999999864
No 132
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=20.95 E-value=74 Score=21.44 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=18.8
Q ss_pred EEEEcCChhHHHHHHHHHHhcCC
Q psy13135 287 QWVGFDDEKSIRYKMNWLKDNGY 309 (996)
Q Consensus 287 ~Wv~ydd~~s~~~K~~~~~~~~l 309 (996)
++++++ +++|..|++|+++.|+
T Consensus 9 ~il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 9 QILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred Cccccc-HHHhhHHHHHHHHcCC
Confidence 567888 9999999999997764
No 133
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=20.52 E-value=75 Score=41.12 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred cccccccchhhhhhHHHhhhccccccccccCCCCCccChHHHHHHHHHHHHHHhhcccccCCCceeE
Q psy13135 730 TGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 796 (996)
Q Consensus 730 c~~~~~r~~~i~siv~~l~~~~~DGvdiDwE~p~~~~d~~~~~~fl~elr~~l~~~~~~~~~~~~~l 796 (996)
+.++.-|+-+++++.-++++|++||+-+|--.-...+ |++++++++++.. +.-+++
T Consensus 468 ~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~-------f~~~~~~~l~~i~----pdi~l~ 523 (898)
T TIGR02103 468 TEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKA-------QMLAAREAIKALT----PEIYFY 523 (898)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHH-------HHHHHHHHHHHhC----CCEEEE
No 134
>PRK14705 glycogen branching enzyme; Provisional
Probab=20.31 E-value=2.3e+02 Score=38.10 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcceEEEeee-------C--------CCC---ccCHHHHHHHHHHHHHHHHhh
Q psy13135 469 GNVFRMNQFVYESIEFLREHKFNGLDVDWE-------Y--------PRG---ADDRASYVNLLKELRLAFEGE 523 (996)
Q Consensus 469 s~~~~r~~fi~siv~~l~~ygfDGIDIDwE-------~--------P~~---~~d~~~f~~llkeLr~~l~~~ 523 (996)
.++..|+-+++++.-|+++|++||+-+|-- | |.. .++ ..=..|+++|.+.+++.
T Consensus 877 ~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en-~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 877 GRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGREN-LEAISFLQEVNATVYKT 948 (1224)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccC-hHHHHHHHHHHHHHHHH
Confidence 567888888999999999999999999963 1 110 111 12367999999988764
Done!