RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13135
(996 letters)
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain
family includes a large number of catalytically inactive
chitinase-like lectins (chitolectins) including YKL-39,
YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic
mammalian chitinase), as well as catalytically active
chitotriosidases. The conserved domain is an
eight-stranded alpha/beta barrel fold belonging to the
family 18 glycosyl hydrolases. The fold has a
pronounced active-site cleft at the C-terminal end of
the beta-barrel. The chitolectins lack a key active
site glutamate (the proton donor required for hydrolytic
activity) but retain highly conserved residues involved
in oligosaccharide binding. Chitotriosidase is a
chitinolytic enzyme expressed in maturing macrophages,
which suggests that it plays a part in antimicrobial
defense. Chitotriosidase hydrolyzes chitotriose, as
well as colloidal chitin to yield chitobiose and is
therefore considered an exochitinase. Chitotriosidase
occurs in two major forms, the large form being
converted to the small form by either RNA or
post-translational processing. Although the small form,
containing the chitinase domain alone, is sufficient for
the chitinolytic activity, the additional C-terminal
chitin-binding domain of the large form plays a role in
processing colloidal chitin. The chitotriosidase gene is
nonessential in humans, as about 35% of the population
are heterozygous and 6% homozygous for an inactivated
form of the gene. HCGP39 is a 39-kDa human cartilage
glycoprotein thought to play a role in connective tissue
remodeling and defense against pathogens.
Length = 362
Score = 537 bits (1387), Expect = 0.0
Identities = 193/349 (55%), Positives = 244/349 (69%), Gaps = 13/349 (3%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGK--FE 436
+ CY T+W+Q RPG GKF PENIDP LCTH+IYAF L + + E ++ +E
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGL-NPDGNIIILDEWNDIDLGLYE 59
Query: 437 ALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD 496
L+EKNP++K LLAIGGW FGS F + + F+ +I FLR++ F+GLD+D
Sbjct: 60 RFNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLD 119
Query: 497 WEYP--RG--ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVP 552
WEYP RG +D+ ++V LLKELR AFE EA PRLLLTAAV A E I A YD+P
Sbjct: 120 WEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PRLLLTAAVSAGKETIDAAYDIP 174
Query: 553 EISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKE 612
EISKYLDFINVMTYDFHG WE GHNSPL T QK L V+Y+ K W+ +GAP E
Sbjct: 175 EISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPE 234
Query: 613 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLV 672
KL++G+PTYGRSFTL P+ +GAPASG G G YT EAGF++YYE+C+FLK T+V
Sbjct: 235 KLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFLKS-GWTVV 293
Query: 673 WDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
WD+EQ+VP+AYK +QWVG+DDE S+ +K+ +LK G GG M+WS+D+DD
Sbjct: 294 WDDEQKVPYAYKGNQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDD 342
Score = 191 bits (488), Expect = 8e-54
Identities = 79/152 (51%), Positives = 92/152 (60%), Gaps = 19/152 (12%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RG--ADDRASYVNLLKEL 778
S F + + F+ +I FLR++ F+GLD+DWEYP RG +D+ ++V LLKEL
Sbjct: 84 SAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKEL 143
Query: 779 RLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQV 838
R AFE EA PRLLLTAAV A E I A YD+PEISKYLDFINVMTYDFHG WE
Sbjct: 144 REAFEPEA-----PRLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVT 198
Query: 839 GHNSPLKPLEVLLITTLSIPGATSYQKKLTVD 870
GHNSPL T QK L VD
Sbjct: 199 GHNSPLYAG----------SADTGDQKYLNVD 220
Score = 149 bits (378), Expect = 4e-39
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 261 VCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+CE L++G VWDDE KVPY G+QWVG+DDE+SI K+ +LK G GGAMVW++D+D
Sbjct: 282 ICEFLKSGWTVVWDDEQKVPYAYKGNQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLD 341
Query: 321 DFTGTVCGGDVKYPLIGAMREEL 343
DF GT G KYPL+ A+ L
Sbjct: 342 DFRGTCGQG--KYPLLNAINRAL 362
Score = 124 bits (313), Expect = 1e-30
Identities = 46/80 (57%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 99 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 158
VVCY+TNW+QYR GKF PE+I+P LCTHII+AF L + DE D +GLY
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGL--NPDGNIIILDEWNDIDLGLY 58
Query: 159 ERIEQLKKANPKLKTLLAIG 178
ER LK+ NP LKTLLAIG
Sbjct: 59 ERFNALKEKNPNLKTLLAIG 78
Score = 112 bits (283), Expect = 1e-26
Identities = 51/105 (48%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 827 TYDFHG---QWERQVGHNSPL--KPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASF 881
Y F G WE P K V L+ L +++ + LLLTAAV A
Sbjct: 110 KYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKEL----REAFEPEAP-RLLLTAAVSAGK 164
Query: 882 EAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEA 926
E I A YD+PEISKYLDFINVMTYDFHG WE GHNSPL A
Sbjct: 165 ETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSA 209
Score = 77.6 bits (192), Expect = 5e-15
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYA 254
+ CY T+W+Q RPG GKF PENIDP LCTH+IYA
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYA 34
>gnl|CDD|214753 smart00636, Glyco_18, Glyco_18 domain.
Length = 334
Score = 379 bits (976), Expect = e-123
Identities = 140/346 (40%), Positives = 197/346 (56%), Gaps = 17/346 (4%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ Y T+W F ++I TH+IYAF + T+ E + G F L
Sbjct: 2 VVGYFTNWGVYGR---NFPVDDIPASKLTHIIYAFANIDP-DGTVTIGDEWADIGNFGQL 57
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
L++KNP +K+LL+IGGW S F + + +F+ + FL+++ F+G+D+DWE
Sbjct: 58 KALKKKNPGLKVLLSIGGWTE-SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116
Query: 499 YPRGA-DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYD-VPEISK 556
YP G DDR +Y LLKELR A + E LLT AVPA + I GY +P I+K
Sbjct: 117 YPGGRGDDRENYTALLKELREALDKEGAE--GKGYLLTIAVPAGPDKIDKGYGDLPAIAK 174
Query: 557 YLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMI 616
YLDFIN+MTYDFHG W GHN+PL G +K V+Y+ K ++ +G P KL++
Sbjct: 175 YLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP---EKYNVDYAVKYYLCKGVPPSKLVL 231
Query: 617 GMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNE 676
G+P YGR +TLVD + GAP +G G T E G + Y E+C L T+V+D+
Sbjct: 232 GIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLLG---ATVVYDDT 288
Query: 677 QQVPFAYKDD--QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+ P+AY QWV +DD RS+K K D++K+ G GG+MIW +D D
Sbjct: 289 AKAPYAYNPGTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334
Score = 151 bits (383), Expect = 4e-40
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 713 MIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGA-DDRASY 771
++ S+ S F + + +F+ + FL+++ F+G+D+DWEYP G DDR +Y
Sbjct: 69 VLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGGRGDDRENY 128
Query: 772 VNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYD-VPEISKYLDFINVMTYDF 830
LLKELR A + E LLT AVPA + I GY +P I+KYLDFIN+MTYDF
Sbjct: 129 TALLKELREALDKEGAE--GKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDF 186
Query: 831 HGQWERQVGHNSPL 844
HG W GHN+PL
Sbjct: 187 HGAWSNPTGHNAPL 200
Score = 87.7 bits (218), Expect = 2e-18
Identities = 42/107 (39%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 820 LDFINVMTYDFHG---QWERQVGHNSPLKPLEVLLITTL-SIPGATSYQKKLTVDLLLTA 875
+ F+ Y F G WE G + L+ L + K LLT
Sbjct: 100 VSFLK--KYGFDGIDIDWE-YPGGRGDDRENYTALLKELREALDKEGAEGK---GYLLTI 153
Query: 876 AVPASFEAIAAGYD-VPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
AVPA + I GY +P I+KYLDFIN+MTYDFHG W GHN+PL
Sbjct: 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPL 200
Score = 85.4 bits (212), Expect = 1e-17
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 258 PRRVCEMLRNGAGYVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVW 315
R +C++L GA V+DD K PY + QWV +DD +SI+ K +++KD G GG M+W
Sbjct: 272 YREICKLL--GATVVYDDTAKAPYAYNPGTGQWVSYDDPRSIKAKADYVKDKGLGGVMIW 329
Query: 316 TVDMD 320
+D D
Sbjct: 330 ELDAD 334
Score = 83.5 bits (207), Expect = 4e-17
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 157
RVV Y+TNW Y F +DI THII+AF + + DE D +G
Sbjct: 1 RVVGYFTNWGVYGRN---FPVDDIPASKLTHIIYAFANIDPDG--TVTIGDEWAD--IGN 53
Query: 158 YERIEQLKKANPKLKTLLAIG 178
+ +++ LKK NP LK LL+IG
Sbjct: 54 FGQLKALKKKNPGLKVLLSIG 74
Score = 43.1 bits (102), Expect = 5e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYA 254
+ Y T+W F ++I TH+IYA
Sbjct: 2 VVGYFTNWGVYGR---NFPVDDIPASKLTHIIYA 32
>gnl|CDD|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.
Length = 325
Score = 328 bits (843), Expect = e-104
Identities = 140/346 (40%), Positives = 197/346 (56%), Gaps = 27/346 (7%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLN--EDKEKDEAGKFE 436
I Y T W G F ++I TH+IYAF + + N + ++ G FE
Sbjct: 3 IVGYYTQWGNYGEG---FPLDDIPTDKLTHIIYAFANIDGNGTFGNNADTEDDGLKGCFE 59
Query: 437 ALMQLRE-KNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDV 495
L L++ +NP +K+LL+IGGW F S F L + + F I+FL+++ F+G+D+
Sbjct: 60 QLKDLKKCQNPGVKVLLSIGGWTF-SGGFSLLASDDAKRKTFADSIIDFLKKYGFDGIDI 118
Query: 496 DWEYPRG-ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEI 554
DWEYP G DD+ +Y LLKELR A + EAK LL+AAVPA + I G D+ +I
Sbjct: 119 DWEYPGGKGDDKDNYTALLKELRAALKKEAK----AGYLLSAAVPAGPDKID-GSDIAKI 173
Query: 555 SKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKL 614
KYLDFIN+MTYDFHG W G N+PL V+Y+ + ++K G P KL
Sbjct: 174 GKYLDFINLMTYDFHG-WSNITGPNAPLYDGSWQN-------VDYAVQYYLKAGVPASKL 225
Query: 615 MIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWD 674
++G+P YGR +TLV+ + GAPA PG T E G +SY E+C LK +D
Sbjct: 226 VLGIPFYGRGWTLVNGSGNGGGAPA-----PGPGTWEGGILSYKEICALLK-SGAGPGYD 279
Query: 675 NEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD 720
+ + P+ YK Q+V +DD RS+K K ++K+ G GG+MIWS+D D
Sbjct: 280 DTAKAPYIYKGKQFVSYDDPRSIKAKAKYVKDKGLGGVMIWSLDQD 325
Score = 136 bits (344), Expect = 4e-35
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 710 GGIMIWSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRG-ADDR 768
G ++ S+ S F L + + F I+FL+++ F+G+D+DWEYP G DD+
Sbjct: 71 GVKVLLSIGGWTFSGGFSLLASDDAKRKTFADSIIDFLKKYGFDGIDIDWEYPGGKGDDK 130
Query: 769 ASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTY 828
+Y LLKELR A + EAK LL+AAVPA + I G D+ +I KYLDFIN+MTY
Sbjct: 131 DNYTALLKELRAALKKEAK----AGYLLSAAVPAGPDKI-DGSDIAKIGKYLDFINLMTY 185
Query: 829 DFHGQWERQVGHNSPL 844
DFHG W G N+PL
Sbjct: 186 DFHG-WSNITGPNAPL 200
Score = 87.6 bits (217), Expect = 2e-18
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 213 KPAPIKIDIFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYALSTPRRVCEMLRNGAGYV 272
+ + + I Y W+ G P T LS + +C +L++GAG
Sbjct: 221 PASKLVLGIPFYGRGWTLV--NGSGNGGGAPAPGPGTWEGGILS-YKEICALLKSGAGPG 277
Query: 273 WDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+DD K PY+ G Q+V +DD +SI+ K ++KD G GG M+W++D D
Sbjct: 278 YDDTAKAPYIYKGKQFVSYDDPRSIKAKAKYVKDKGLGGVMIWSLDQD 325
Score = 81.8 bits (202), Expect = 1e-16
Identities = 42/104 (40%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 821 DFINVMTYDFHG---QWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAV 877
DF+ Y F G WE G K L+ L + +K+ LL+AAV
Sbjct: 106 DFLK--KYGFDGIDIDWE-YPGGKGDDKDNYTALLKEL----RAALKKEAKAGYLLSAAV 158
Query: 878 PASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 921
PA + I G D+ +I KYLDFIN+MTYDFHG W G N+PL
Sbjct: 159 PAGPDKID-GSDIAKIGKYLDFINLMTYDFHG-WSNITGPNAPL 200
Score = 77.5 bits (191), Expect = 4e-15
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 97 YRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG 156
R+V YYT W Y F +DI D THII+AF + G + + D DG G
Sbjct: 1 GRIVGYYTQWGNYGEG---FPLDDIPTDKLTHIIYAFANI-DGNGTFGNNADTEDDGLKG 56
Query: 157 LYERIEQLK-KANPKLKTLLAIG 178
+E+++ LK NP +K LL+IG
Sbjct: 57 CFEQLKDLKKCQNPGVKVLLSIG 79
Score = 42.5 bits (100), Expect = 7e-04
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYA 254
I Y T W G F ++I TH+IYA
Sbjct: 3 IVGYYTQWGNYGEG---FPLDDIPTDKLTHIIYA 33
>gnl|CDD|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18)
type II chitinases hydrolyze chitin, an abundant polymer
of N-acetylglucosamine and have been identified in
bacteria, fungi, insects, plants, viruses, and protozoan
parasites. The structure of this domain is an
eight-stranded alpha/beta barrel with a pronounced
active-site cleft at the C-terminal end of the
beta-barrel.
Length = 322
Score = 256 bits (656), Expect = 1e-77
Identities = 112/370 (30%), Positives = 172/370 (46%), Gaps = 76/370 (20%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK-DHKLTLNEDKEKDEA----- 432
+ Y T+W G F ++I TH+ YAF + D + ++D+ DEA
Sbjct: 1 VVGYFTNWGI--YGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVD 58
Query: 433 -----------GKFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYES 481
G F L +L++KNP +KILL+IGGW + S F + +F +
Sbjct: 59 GGADTDDQPLKGNFGQLRKLKQKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSA 117
Query: 482 IEFLREHKFNGLDVDWEYP---------RGADDRASYVNLLKELRLAFEGEAKTSGEPRL 532
++F+R++ F+G+D+DWEYP +D+ ++ LLKELR A + +G +
Sbjct: 118 VDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETG-RKY 176
Query: 533 LLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQ 592
LLT A PA + + +V EI+KYLDFIN+MTYDFHG W GH+S L
Sbjct: 177 LLTIAAPAGPDKLDKL-EVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYA--SPADPP 233
Query: 593 KKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 652
+V+ + ++ G P EKL++G+P YGR +T
Sbjct: 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWT-------------------------- 267
Query: 653 GFMSYYEVCDFLKKDNTTLVWDNEQQVPFAYKDD--QWVGFDDERSLKMKMDWLKEDGYG 710
T WD + P+ Y ++ +DD RS+K K D++K+ G G
Sbjct: 268 ---------------GYTRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLG 312
Query: 711 GIMIWSVDMD 720
G+M W + D
Sbjct: 313 GVMFWELSGD 322
Score = 131 bits (333), Expect = 1e-33
Identities = 72/236 (30%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 667 DNTTLVWDNEQQVPFAYKDDQWVGFDDE---------RSLKMKMDWLKEDGYGGIMI--- 714
D + D+E A D DD+ R LK K LK I++
Sbjct: 39 DGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQKNPHLK------ILLSIG 92
Query: 715 -WSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP---------RG 764
W+ S F + +F +++F+R++ F+G+D+DWEYP
Sbjct: 93 GWT-----WSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVAR 147
Query: 765 ADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFIN 824
+D+ ++ LLKELR A + +G + LLT A PA + + +V EI+KYLDFIN
Sbjct: 148 PEDKENFTLLLKELREALDALGAETG-RKYLLTIAAPAGPDKLDKL-EVAEIAKYLDFIN 205
Query: 825 VMTYDFHGQWERQVGHNSPLKPLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPAS 880
+MTYDFHG W GH+S L S+ A V+ L+A VP
Sbjct: 206 LMTYDFHGAWSNTTGHHSNLYASPADPPGGYSVDAA--------VNYYLSAGVPPE 253
Score = 79.2 bits (196), Expect = 8e-16
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 870 DLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKP 923
LLT A PA + + +V EI+KYLDFIN+MTYDFHG W GH+S L
Sbjct: 175 KYLLTIAAPAGPDKLDKL-EVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYA 227
Score = 69.6 bits (171), Expect = 1e-12
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 266 RNGAGYV--WDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
R GY WD+ K PYL + ++ +DD +SI+ K +++KD G GG M W + D
Sbjct: 264 RGWTGYTRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322
Score = 56.9 bits (138), Expect = 2e-08
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 18/95 (18%)
Query: 99 VVCYYTNWSQYRTKIGKFQPE-DIEPDLCTHIIFAFG--------------WLKKGKLSS 143
VV Y+TNW Y + DI D THI +AF + S
Sbjct: 1 VVGYFTNWGIY---GRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSV 57
Query: 144 FESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 178
D G + ++ +LK+ NP LK LL+IG
Sbjct: 58 DGGADTDDQPLKGNFGQLRKLKQKNPHLKILLSIG 92
Score = 31.1 bits (71), Expect = 2.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYA 254
+ Y T+W G F ++I TH+ YA
Sbjct: 1 VVGYFTNWGI--YGRNYFVTDDIPADKLTHINYA 32
>gnl|CDD|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism].
Length = 441
Score = 209 bits (534), Expect = 3e-59
Identities = 115/434 (26%), Positives = 180/434 (41%), Gaps = 73/434 (16%)
Query: 348 RANNAKDVDWAKVAGNVEVETVTKP-------APIKIDIFCYMTSWSQARPGAGKFGPEN 400
+ N + V + + + Y TSWSQ + P +
Sbjct: 2 KKANGRSDIIRDDFSLVVHRVPADVVNNKAHTSDDQFKVVGYYTSWSQYDRQD--YFPGD 59
Query: 401 IDPKLCTHVIYAFGTLKDHKLTLNEDKEKDE---------------------------AG 433
I TH+ YAF L +N D + E G
Sbjct: 60 IPLDQLTHINYAF-------LDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKG 112
Query: 434 KFEALMQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGL 493
F AL L+ PD+K L++IGGW+ S F ++ + F ++EF+R + F+G+
Sbjct: 113 HFGALFDLKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAKSAVEFMRTYGFDGV 171
Query: 494 DVDWEYP---------RGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEA 544
D+DWEYP D+A+YV LL+ELR + +A LT A PAS +
Sbjct: 172 DIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLD-KAGVEDGRHYQLTIAAPASKD- 229
Query: 545 IAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLK-------PLEGATSYQKKLTV 597
G + EI++Y+D+IN+MTYDFHG W +GH++ L G ++
Sbjct: 230 KLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGTPKDPPLANGGFYVDAEVDG 289
Query: 598 EYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP-TKFDIGAPASGGG----EPGKYTAEA 652
+E P KL++GMP YGR + VD + G G + A
Sbjct: 290 IDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGN 349
Query: 653 GFMSYYEVCDF----LKKDNTTLVWDNEQQVPFAYKDD--QWVGFDDERSLKMKMDWLKE 706
G Y + D K+ WD+ + P+ Y + ++ +DD RS+K K +++ +
Sbjct: 350 GDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVAD 409
Query: 707 DGYGGIMIWSVDMD 720
+ GG+M W + D
Sbjct: 410 NNLGGMMFWEISGD 423
Score = 107 bits (268), Expect = 2e-24
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 722 LSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP---------RGADDRASYV 772
S F ++ + F ++EF+R + F+G+D+DWEYP D+A+YV
Sbjct: 138 DSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYV 197
Query: 773 NLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHG 832
LL+ELR + +A LT A PAS + G + EI++Y+D+IN+MTYDFHG
Sbjct: 198 LLLQELRKKLD-KAGVEDGRHYQLTIAAPASKD-KLEGLNHAEIAQYVDYINIMTYDFHG 255
Query: 833 QWERQVGHNSPLK 845
W +GH++ L
Sbjct: 256 AWNETLGHHAALY 268
Score = 62.1 bits (151), Expect = 7e-10
Identities = 41/122 (33%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 76 VSLLVVRSSKSSV--KANKDDSKYRVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAF 133
SL+V R V KA+ D +++VV YYT+WSQY + P DI D THI +AF
Sbjct: 15 FSLVVHRVPADVVNNKAHTSDDQFKVVGYYTSWSQY--DRQDYFPGDIPLDQLTHINYAF 72
Query: 134 -GWLKKGKLSSFESNDETKDGKV----------------GLYERIEQLKKANPKLKTLLA 176
GK DE V G + + LK P LKTL++
Sbjct: 73 LDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFGALFDLKATYPDLKTLIS 132
Query: 177 IG 178
IG
Sbjct: 133 IG 134
Score = 61.7 bits (150), Expect = 1e-09
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 797 TAAVPASFEAIAAGYDVPEISKYLDFINV-MTYDFHGQWERQVGHNSP--LKPLEVLLIT 853
AA AS E A E + F V + +++ G G+ K VLL+
Sbjct: 145 MAADDASRENFAKS--AVEFMRTYGFDGVDIDWEYPGS-GGDAGNCGRPKDKANYVLLLQ 201
Query: 854 TLSIPGATSYQKKLTV-------DLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 906
L +KKL LT A PAS + G + EI++Y+D+IN+MTYD
Sbjct: 202 EL--------RKKLDKAGVEDGRHYQLTIAAPASKD-KLEGLNHAEIAQYVDYINIMTYD 252
Query: 907 FHGQWERQVGHNSPLK------PLEANVVSCEEEDGHISY 940
FHG W +GH++ L PL + E I +
Sbjct: 253 FHGAWNETLGHHAALYGTPKDPPLANGGFYVDAEVDGIDW 292
Score = 52.4 bits (126), Expect = 8e-07
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 266 RNGAGYVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 323
+NG WDD K PYL + + ++ +DD +S++ K ++ DN GG M W +
Sbjct: 367 KNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEIS----- 421
Query: 324 GTVCGGDVKYPLIGAMREELNGIP 347
GD L+ A+ E L P
Sbjct: 422 -----GDENGVLLNAVNEGLGFNP 440
Score = 31.2 bits (71), Expect = 2.5
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 190 RANNAKDVDWAKVAGNVEVETVTKP-------APIKIDIFCYMTSWSQARPGAGKFGPEN 242
+ N + V + + + Y TSWSQ + P +
Sbjct: 2 KKANGRSDIIRDDFSLVVHRVPADVVNNKAHTSDDQFKVVGYYTSWSQYDRQD--YFPGD 59
Query: 243 IDPKLCTHVIYA 254
I TH+ YA
Sbjct: 60 IPLDQLTHINYA 71
>gnl|CDD|119358 cd02879, GH18_plant_chitinase_class_V, The class V plant chitinases
have a glycosyl hydrolase family 18 (GH18) domain, but
lack the chitin-binding domain present in other GH18
enzymes. The GH18 domain of the class V chitinases has
endochitinase activity in some cases and no catalytic
activity in others. Included in this family is a lectin
found in black locust (Robinia pseudoacacia) bark, which
binds chitin but lacks chitinase activity. Also
included is a chitinase-related receptor-like kinase
(CHRK1) from tobacco (Nicotiana tabacum), with an
N-terminal GH18 domain and a C-terminal kinase domain,
which is thought to be part of a plant signaling
pathway. The GH18 domain of CHRK1 is expressed
extracellularly where it binds chitin but lacks
chitinase activity.
Length = 299
Score = 195 bits (497), Expect = 7e-56
Identities = 105/346 (30%), Positives = 161/346 (46%), Gaps = 65/346 (18%)
Query: 382 YMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLK--DHKLTLNEDKEKDEAGKFEALM 439
Y +WS+ P P NID L TH+ YAF L +++ ++ E E F
Sbjct: 8 YWPAWSEEFP------PSNIDSSLFTHLFYAFADLDPSTYEVVISPSDES-EFSTFTET- 59
Query: 440 QLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEY 499
++ KNP +K LL+IGG S+ F + + F+ SI+ R++ F+GLD+DWE+
Sbjct: 60 -VKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEF 118
Query: 500 PRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPAS--FEAIAAG--YDVPEIS 555
P + ++ LL+E R A + EA++SG P LLLTAAV S Y + I+
Sbjct: 119 PSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAIN 178
Query: 556 KYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLM 615
K LD++NVM YD++G WE + ++ +Y K W+K G P +KL+
Sbjct: 179 KNLDWVNVMAYDYYGSWESNTTGPAAALY-----DPNSNVSTDYGIKSWIKAGVPAKKLV 233
Query: 616 IGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDN 675
+G+P YGR++TL D T +S Y
Sbjct: 234 LGLPLYGRAWTLYDTT----------------------TVSSY----------------- 254
Query: 676 EQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
Y W+G+DD +S+ +K+ + K+ G G W+V DD
Sbjct: 255 ------VYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDD 294
Score = 105 bits (264), Expect = 9e-25
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 723 STPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 782
S+ F + + F+ SI+ R++ F+GLD+DWE+P + ++ LL+E R A
Sbjct: 80 SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAV 139
Query: 783 EGEAKTSGEPRLLLTAAVPAS--FEAIAAG--YDVPEISKYLDFINVMTYDFHGQWERQV 838
+ EA++SG P LLLTAAV S Y + I+K LD++NVM YD++G WE
Sbjct: 140 KDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNT 199
Query: 839 GH 840
Sbjct: 200 TG 201
Score = 55.8 bits (135), Expect = 4e-08
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 871 LLLTAAVPAS--FEAIAAG--YDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEA 926
LLLTAAV S Y + I+K LD++NVM YD++G WE +
Sbjct: 151 LLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN 210
Query: 927 NVVS 930
+ VS
Sbjct: 211 SNVS 214
Score = 49.3 bits (118), Expect = 5e-06
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 270 GYVW---DDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 321
G W D Y+ G W+G+DD +SI K+ + K G G W V DD
Sbjct: 240 GRAWTLYDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDD 294
Score = 32.7 bits (75), Expect = 0.84
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 114 GKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKT 173
+F P +I+ L TH+ +AF L S++E D E +K+ NP +KT
Sbjct: 14 EEFPPSNIDSSLFTHLFYAFADLDP---STYEVVISPSDESE-FSTFTETVKRKNPSVKT 69
Query: 174 LLAIG 178
LL+IG
Sbjct: 70 LLSIG 74
>gnl|CDD|119349 cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family
18) type II chitinases hydrolyze chitin, an abundant
polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc)
which is a major component of the cell wall of fungi and
the exoskeleton of arthropods. Chitinases have been
identified in viruses, bacteria, fungi, protozoan
parasites, insects, and plants. The structure of the
GH18 domain is an eight-stranded beta/alpha barrel with
a pronounced active-site cleft at the C-terminal end of
the beta-barrel. The GH18 family includes
chitotriosidase, chitobiase, hevamine, zymocin-alpha,
narbonin, SI-CLP (stabilin-1 interacting chitinase-like
protein), IDGF (imaginal disc growth factor), CFLE
(cortical fragment-lytic enzyme) spore hydrolase, the
type III and type V plant chitinases, the
endo-beta-N-acetylglucosaminidases, and the
chitolectins. The GH85 (glycosyl hydrolase, family 85)
ENGases (endo-beta-N-acetylglucosaminidases) are closely
related to the GH18 chitinases and are included in this
alignment model.
Length = 210
Score = 155 bits (395), Expect = 3e-43
Identities = 76/191 (39%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 379 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKDEAGKFEAL 438
+ CY WS R P +I LCTH+IYAF + +LN +K E AL
Sbjct: 1 VICYYDGWSSGRG----PDPTDIPLSLCTHIIYAFAEISSD-GSLNLFGDKSEEPLKGAL 55
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWE 498
+L K P +K+L++IGGW S L + F + FL+ + F+G+D+DWE
Sbjct: 56 EELASKKPGLKVLISIGGWTDSS--PFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWE 113
Query: 499 YPRGAD--DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISK 556
YP AD DR +++ LL+ELR A G LLT AVPAS+ + YDVP I
Sbjct: 114 YPGAADNSDRENFITLLRELRSAL-------GAANYLLTIAVPASYFDLGYAYDVPAIGD 166
Query: 557 YLDFINVMTYD 567
Y+DF+NVMTYD
Sbjct: 167 YVDFVNVMTYD 177
Score = 101 bits (253), Expect = 3e-24
Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 673 WDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGN 732
++ + + L K LK ++I S+ S+PF +
Sbjct: 34 ISSDGSLNLFGDKSEEPLKGALEELASKKPGLK------VLI-SIGGWTDSSPFTLASDP 86
Query: 733 VFRMNQFVYESIEFLREHKFNGLDVDWEYPRGAD--DRASYVNLLKELRLAFEGEAKTSG 790
R F + FL+ + F+G+D+DWEYP AD DR +++ LL+ELR A G
Sbjct: 87 ASRA-AFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSAL-------G 138
Query: 791 EPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 829
LLT AVPAS+ + YDVP I Y+DF+NVMTYD
Sbjct: 139 AANYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177
Score = 56.6 bits (137), Expect = 7e-09
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 99 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAF-GWLKKGKLSSFESNDETKDGKVGL 157
V+CYY WS R P DI LCTHII+AF G L+ F E
Sbjct: 1 VICYYDGWSSGRG----PDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPL----- 51
Query: 158 YERIEQLKKANPKLKTLLAIG 178
+E+L P LK L++IG
Sbjct: 52 KGALEELASKKPGLKVLISIG 72
Score = 53.2 bits (128), Expect = 1e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 870 DLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYD 906
+ LLT AVPAS+ + YDVP I Y+DF+NVMTYD
Sbjct: 141 NYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177
Score = 39.3 bits (92), Expect = 0.005
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 696 SLKMKMDWLKEDGYGGIMIWSVDMD 720
SL K + K+ G GG+MIW +D D
Sbjct: 186 SLGAKAKYAKQKGLGGVMIWELDQD 210
Score = 38.9 bits (91), Expect = 0.006
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 296 SIRYKMNWLKDNGYGGAMVWTVDMD 320
S+ K + K G GG M+W +D D
Sbjct: 186 SLGAKAKYAKQKGLGGVMIWELDQD 210
Score = 36.6 bits (85), Expect = 0.038
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 221 IFCYMTSWSQARPGAGKFGPENIDPKLCTHVIYA 254
+ CY WS R P +I LCTH+IYA
Sbjct: 1 VICYYDGWSSGRG----PDPTDIPLSLCTHIIYA 30
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a
family of growth factors identified in insects that
include at least five members, some of which are encoded
by genes in a tight cluster. The IDGF's have an
eight-stranded alpha/beta barrel fold and are related to
the glycosyl hydrolase family 18 (GH18) chitinases, but
they have an amino acid substitution known to abolish
chitinase catalytic activity. IDGFs may have evolved
from chitinases to gain new functions as growth factors,
interacting with cell surface glycoproteins involved in
growth-promoting processes.
Length = 413
Score = 161 bits (409), Expect = 8e-43
Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 77/404 (19%)
Query: 381 CYMTSWSQARPGAGKFGPENIDPKL--CTHVIYAFGTLKDHKL---TLNEDKEKDEAGKF 435
CY S S R G K E+++P L CTH++Y + + +LNED + D+ +
Sbjct: 4 CYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDK-SHY 62
Query: 436 EALMQLREKNPDIKILLAIGGWAF-----GSTPFKELTGNVFRMNQFVYESIEFLREHKF 490
A+ L+ K P +K+LL++GG + + L + N F+ + L+ + F
Sbjct: 63 RAITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGF 122
Query: 491 NGLDVDWEYPR------------------------------GADDRASYVNLLKELRLAF 520
+GLD+ W++P+ A+ + + L++EL+ A
Sbjct: 123 DGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNAL 182
Query: 521 EGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER---QVG 577
+ LLT V + +DVP I+ +DF+N+ T+DF ER +
Sbjct: 183 RPDGL-------LLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTP-ERNPEEAD 233
Query: 578 HNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP---TKF 633
+ +P+ + E + V+Y W+ QG P KL +G+ TYGR++ L T
Sbjct: 234 YTAPIYELYERNPHHNVDYQVKY----WLNQGTPASKLNLGIATYGRAWKLTKDSGITGV 289
Query: 634 DIGAPASGGGEPGKYTAEAGFMSYYEVCDFL------KKDNTTL--VWDNEQQV-PFAYK 684
G G G T G +S+ E+C L K + L V D ++ +AY+
Sbjct: 290 PPVLETDGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYR 349
Query: 685 --DDQ-----WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
D+ WV ++D + K + K G GG+ ++ + +DD
Sbjct: 350 PADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDD 393
Score = 59.6 bits (145), Expect = 4e-09
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 98 RVVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKV 155
++VCYY + S R + K ED+EP L CTH+++ + + S +E D
Sbjct: 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIK-SLNEDLDLDK 59
Query: 156 GLYERIEQLKKANPKLKTLLAIG 178
Y I LK+ P LK LL++G
Sbjct: 60 SHYRAITSLKRKYPHLKVLLSVG 82
Score = 51.2 bits (123), Expect = 2e-06
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 715 WSVDMDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPR----------- 763
D + + + L + N F+ + L+ + F+GLD+ W++P+
Sbjct: 85 RDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFG 144
Query: 764 -------------------GADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASF 804
A+ + + L++EL+ A + LLT V
Sbjct: 145 SAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALRPDGL-------LLTLTVLPHV 197
Query: 805 EAIAAGYDVPEISKYLDFINVMTYDF 830
+ +DVP I+ +DF+N+ T+DF
Sbjct: 198 NS-TWYFDVPAIANNVDFVNLATFDF 222
Score = 43.8 bits (104), Expect = 4e-04
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 288 WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 343
WV ++D + K + K G GG ++ + +DDF G C GD K+P++ + + L
Sbjct: 360 WVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQ-CTGD-KFPILRSAKYRL 413
Score = 36.9 bits (86), Expect = 0.056
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 888 YDVPEISKYLDFINVMTYDF 907
+DVP I+ +DF+N+ T+DF
Sbjct: 203 FDVPAIANNVDFVNLATFDF 222
Score = 35.0 bits (81), Expect = 0.17
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 223 CYMTSWSQARPGAGKFGPENIDPKL--CTHVIY 253
CY S S R G K E+++P L CTH++Y
Sbjct: 4 CYYDSKSYLREGLAKMSLEDLEPALQFCTHLVY 36
>gnl|CDD|119357 cd02878, GH18_zymocin_alpha, Zymocin, alpha subunit. Zymocin is a
heterotrimeric enzyme that inhibits yeast cell cycle
progression. The zymocin alpha subunit has a chitinase
activity that is essential for holoenzyme action from
the cell exterior while the gamma subunit contains the
intracellular toxin responsible for G1 phase cell cycle
arrest. The zymocin alpha and beta subunits are thought
to act from the cell's exterior by docking to the cell
wall-associated chitin, thus mediating gamma-toxin
translocation. The alpha subunit has an eight-stranded
TIM barrel fold similar to that of family 18 glycosyl
hydrolases such as hevamine, chitolectin, and
chitobiase.
Length = 345
Score = 141 bits (358), Expect = 9e-37
Identities = 99/366 (27%), Positives = 158/366 (43%), Gaps = 52/366 (14%)
Query: 382 YMTSWSQARPGAGKFGPENIDPKLCTHVIYAFGTLKDHKLTLNEDKEKD---EAGKFEAL 438
Y +++ RP ID TH+ +AF + D D +F
Sbjct: 5 YFEAYNLDRPCLNM-DVTQIDTSKYTHIHFAFANI-------TSDFSVDVSSVQEQFSDF 56
Query: 439 MQLREKNPDIKILLAIGGWAFGSTPFKELTGNVFR-------MNQFVYESIEFLREHKFN 491
+L+ +K +L+ GGW F ++P T +FR + F + F+ ++ +
Sbjct: 57 KKLK----GVKKILSFGGWDFSTSP---STYQIFRDAVKPANRDTFANNVVNFVNKYNLD 109
Query: 492 GLDVDWEYPRGA-----------DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPA 540
G+D DWEYP GA DD +Y+ LK L+ K+ L+ A PA
Sbjct: 110 GVDFDWEYP-GAPDIPGIPAGDPDDGKNYLEFLKLLKSKL-PSGKS-------LSIAAPA 160
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLT-VEY 599
S+ + G+ + +++KY+D+I MTYD HGQW+ SP P T
Sbjct: 161 SYWYLK-GFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLD 219
Query: 600 SAKEWVKQGAPKEKLMIGMPTYGRSFTLVDPTKFDIGAPASG---GGEPGKYTAEAGFMS 656
+ K G P K+++G+ +YGRSF + DP G +G G E G+ T AG+ +
Sbjct: 220 ALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGA 279
Query: 657 YYEVCDFLKKDNTTLVW-DNEQQVPFA-YKDDQWVGFDDERSLKMKMDWLKEDGYGGIMI 714
E+ + W D + Y DDQWV + + +++W K +GG
Sbjct: 280 ISEIEIIDISKSKNKRWYDTDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSD 339
Query: 715 WSVDMD 720
W+VD+
Sbjct: 340 WAVDLQ 345
Score = 79.7 bits (197), Expect = 8e-16
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 39/169 (23%)
Query: 685 DDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPFKELTGNVFR-------MN 737
D V K+K K +GG W D ST T +FR +
Sbjct: 45 DVSSVQEQFSDFKKLK-GVKKILSFGG---W-----DFST--SPSTYQIFRDAVKPANRD 93
Query: 738 QFVYESIEFLREHKFNGLDVDWEYPRGA-----------DDRASYVNLLKELRLAFEGEA 786
F + F+ ++ +G+D DWEYP GA DD +Y+ LK L+
Sbjct: 94 TFANNVVNFVNKYNLDGVDFDWEYP-GAPDIPGIPAGDPDDGKNYLEFLKLLKSKL-PSG 151
Query: 787 KTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWE 835
K+ L+ A PAS+ + G+ + +++KY+D+I MTYD HGQW+
Sbjct: 152 KS-------LSIAAPASYWYLK-GFPIKDMAKYVDYIVYMTYDLHGQWD 192
Score = 47.3 bits (113), Expect = 2e-05
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 865 KKLTVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWE 912
KL L+ A PAS+ + G+ + +++KY+D+I MTYD HGQW+
Sbjct: 146 SKLPSGKSLSIAAPASYWYLK-GFPIKDMAKYVDYIVYMTYDLHGQWD 192
Score = 33.8 bits (78), Expect = 0.43
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 272 VWDDEMKVPYLVHGD-QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
+D + LV+ D QWV + + ++ W K +GG W VD+
Sbjct: 296 WYDTDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme
(CFLE) is a peptidoglycan hydrolase involved in
bacterial endospore germination. CFLE is expressed as
an inactive preprotein (called SleB) in the forespore
compartment of sporulating cells. SleB translocates
across the forespore inner membrane and is deposited as
a mature enzyme in the cortex layer of the spore. As
part of a sensory mechanism capable of initiating
germination, CFLE degrades a spore-specific
peptidoglycan constituent called muramic-acid
delta-lactam that comprises the outer cortex. CFLE has
a C-terminal glycosyl hydrolase family 18 (GH18)
catalytic domain as well as two N-terminal LysM
peptidoglycan-binding domains. In addition to SleB,
this family includes YaaH, YdhD, and YvbX from Bacillus
subtilis.
Length = 313
Score = 125 bits (317), Expect = 1e-31
Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 50/286 (17%)
Query: 448 IKILLAI---GGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGAD 504
+K LL I F S + N + + + +++ ++G+++D+E +
Sbjct: 59 VKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP-PE 117
Query: 505 DRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPAS----FEAIAAGYDVPEISKYLDF 560
DR +Y L+EL T L TA VP + F + YD I K +DF
Sbjct: 118 DREAYTQFLRELSDRLHPAGYT------LSTAVVPKTSADQFGNWSGAYDYAAIGKIVDF 171
Query: 561 INVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPT 620
+ +MTYD+H + G +P+ +E ++Y A + P+EK+++G+P
Sbjct: 172 VVLMTYDWHWRGGPP-GPVAPIGWVER--------VLQY-AVTQI----PREKILLGIPL 217
Query: 621 YGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVP 680
YG +TL P K +A +S + + K+ + +D E Q P
Sbjct: 218 YGYDWTL-----------------PYKKGGKASTISPQQAINLAKRYGAEIQYDEEAQSP 260
Query: 681 -FAYKDDQ----WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
F Y D+Q V F+D RSL+ K + KE G G+ W + ++D
Sbjct: 261 FFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLED 306
Score = 73.8 bits (182), Expect = 5e-14
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 679 VPFAY---KDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLSTPF-KELTGNVF 734
PF Y D G DER + + K G+ V + + F EL V
Sbjct: 30 APFWYGVDADGTLTGLPDERLI----EAAKR---RGVKPLLVITNLTNGNFDSELAHAVL 82
Query: 735 R----MNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSG 790
+ + + +++ ++G+++D+E +DR +Y L+EL T
Sbjct: 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVP-PEDREAYTQFLRELSDRLHPAGYT-- 139
Query: 791 EPRLLLTAAVPAS----FEAIAAGYDVPEISKYLDFINVMTYDFHGQW 834
L TA VP + F + YD I K +DF+ +MTYD+H +
Sbjct: 140 ----LSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG 183
Score = 44.6 bits (106), Expect = 2e-04
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 872 LLTAAVPAS----FEAIAAGYDVPEISKYLDFINVMTYDFHGQW 911
L TA VP + F + YD I K +DF+ +MTYD+H +
Sbjct: 140 LSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG 183
Score = 38.0 bits (89), Expect = 0.018
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 266 RNGAGYVWDDEMKVPYLVHGDQ-----WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 320
R GA +D+E + P+ + D+ V F+D +S++ K K+ G G W + ++
Sbjct: 246 RYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLE 305
Query: 321 D 321
D
Sbjct: 306 D 306
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
prediction only].
Length = 423
Score = 99.8 bits (249), Expect = 4e-22
Identities = 75/276 (27%), Positives = 116/276 (42%), Gaps = 48/276 (17%)
Query: 456 GWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKE 515
G FG + L N N+ + I L + G+++D+E G DR Y + L++
Sbjct: 174 GANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFEN-VGPGDRELYTDFLRQ 232
Query: 516 LRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAG-----YDVPEISKYLDFINVMTYDFHG 570
+R A T ++ AV A + G YD + K DF+ +MTYD+H
Sbjct: 233 VRDALHSGGYT-------VSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHY 285
Query: 571 QWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTLVDP 630
G P+ + + +EY+ P EK+M+G+P YG +TL
Sbjct: 286 SG----GPPGPVASIG-----WVRKVIEYALTV-----IPAEKVMMGIPLYGYDWTL--- 328
Query: 631 TKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVP-FAYKDDQ-- 687
+P Y A A +S E D + N T+ +D Q P F Y D +
Sbjct: 329 -----------PYDPLGYLARA--ISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGR 375
Query: 688 --WVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDD 721
V F+D RS + K+D +KE G G+ W + +D
Sbjct: 376 YHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQED 411
Score = 56.3 bits (136), Expect = 5e-08
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 732 NVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGE 791
N N+ + I L + G+++D+E G DR Y + L+++R A T
Sbjct: 188 NETAKNRLINNIITLLDARGYRGVNIDFEN-VGPGDRELYTDFLRQVRDALHSGGYT--- 243
Query: 792 PRLLLTAAVPASFEAIAAG-----YDVPEISKYLDFINVMTYDFHGQW 834
++ AV A + G YD + K DF+ +MTYD+H
Sbjct: 244 ----VSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG 287
Score = 38.6 bits (90), Expect = 0.017
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 249 THVIYALSTPRRVCEMLRNGAGYVWDDEMKVPYLVHGDQ-----WVGFDDEKSIRYKMNW 303
++ A+S + R A +D + P+ + D+ V F+D +S + K++
Sbjct: 334 GYLARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDL 393
Query: 304 LKDNGYGGAMVWTVDMDD 321
+K+ G G W + +D
Sbjct: 394 IKEYGLRGVSYWVLGQED 411
Score = 37.0 bits (86), Expect = 0.047
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 873 LTAAVPASFEAIAAG-----YDVPEISKYLDFINVMTYDFHGQW 911
++ AV A + G YD + K DF+ +MTYD+H
Sbjct: 244 VSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG 287
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain. This
domain is called the Peritrophin-A domain and is found
in chitin binding proteins particularly peritrophic
matrix proteins of insects and animal chitinases. Copies
of the domain are also found in some baculoviruses.
Relevant references that describe proteins with this
domain include. It is an extracellular domain that
contains six conserved cysteines that probably form
three disulphide bridges. Chitin binding has been
demonstrated for a protein containing only two of these
domains.
Length = 53
Score = 70.5 bits (173), Expect = 3e-15
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 931 CEE-EDGHISYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETC 985
CE DG +PD DC+ YY C + CP+ LVF+P CD+P+NV C
Sbjct: 1 CEGRPDG---LYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVDC 53
>gnl|CDD|119354 cd02875, GH18_chitobiase, Chitobiase (also known as
di-N-acetylchitobiase) is a lysosomal glycosidase that
hydrolyzes the reducing-end N-acetylglucosamine from the
chitobiose core of oligosaccharides during the ordered
degradation of asparagine-linked glycoproteins in
eukaryotes. Chitobiase can only do so if the asparagine
that joins the oligosaccharide to protein is previously
removed by a glycosylasparaginase. Chitobiase is
therefore the final step in the lysosomal degradation of
the protein/carbohydrate linkage component of
asparagine-linked glycoproteins. The catalytic domain of
chitobiase is an eight-stranded alpha/beta barrel fold
similar to that of other family 18 glycosyl hydrolases
such as hevamine and chitotriosidase.
Length = 358
Score = 73.6 bits (181), Expect = 8e-14
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 51/287 (17%)
Query: 460 GSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGADDRASYVNLLKELR 517
G P ++++ +R Q++ + +E + +G+++D E P +G+ + + L+KE
Sbjct: 84 GDVPLEQISNPTYR-TQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETT 142
Query: 518 LAFEGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDFHGQ-WERQ 575
AF+ E ++ V S I YD I+ DF+ VM YD Q W ++
Sbjct: 143 KAFKKENPGYQ-----ISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKE 197
Query: 576 --VGHNSPL-KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFT------ 626
G NSP + L G ++ K G +KL++G+P YG +
Sbjct: 198 CIAGANSPYSQTLSGYNNF-------------TKLGIDPKKLVMGLPWYGYDYPCLNGNL 244
Query: 627 -----LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDNTTLVWDNEQQVPF 681
+ F GA S A + Y E+ + +WD+EQ+ PF
Sbjct: 245 EDVVCTIPKVPF-RGANCS--------DAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPF 295
Query: 682 AYKDD-----QWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMDDLS 723
D V +D+ +SL +K+ + K G GI +W+ D+ D S
Sbjct: 296 YNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYS 342
Score = 42.4 bits (100), Expect = 8e-04
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 725 PFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYP--RGADDRASYVNLLKELRLAF 782
P ++++ +R Q++ + +E + +G+++D E P +G+ + + L+KE AF
Sbjct: 87 PLEQISNPTYR-TQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAF 145
Query: 783 EGEAKTSGEPRLLLTAAVPASFEAI-AAGYDVPEISKYLDFINVMTYDFHGQ-WERQ--V 838
+ E ++ V S I YD I+ DF+ VM YD Q W ++
Sbjct: 146 KKENPGYQ-----ISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIA 200
Query: 839 GHNSP 843
G NSP
Sbjct: 201 GANSP 205
Score = 33.2 bits (76), Expect = 0.71
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 270 GYVWDDEMKVPYLVHGD-----QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 324
G +WD E K P+ + D V +D+ +S+ K+ + K+ G G +W D+ D++G
Sbjct: 284 GRLWDSEQKSPFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSG 343
Query: 325 TV 326
Sbjct: 344 LP 345
Score = 32.8 bits (75), Expect = 0.79
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 888 YDVPEISKYLDFINVMTYDFHGQ-WERQ--VGHNSP 920
YD I+ DF+ VM YD Q W ++ G NSP
Sbjct: 170 YDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSP 205
>gnl|CDD|119362 cd06545, GH18_3CO4_chitinase, The Bacteroides thetaiotaomicron
protein represented by pdb structure 3CO4 is an
uncharacterized bacterial member of the family 18
glycosyl hydrolases with homologs found in
Flavobacterium, Stigmatella, and Pseudomonas.
Length = 253
Score = 72.1 bits (177), Expect = 8e-14
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 33/184 (17%)
Query: 447 DIKILLAIGGWAFGSTPFKELTGNVF---RMNQFVYESIEFLREHKFNGLDVDWEYPRGA 503
++KIL+++ G GS P E T + + V + I ++ + +G+DVD E P
Sbjct: 59 NVKILISLAG---GSPP--EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGP--D 111
Query: 504 DDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINV 563
Y+ ++ L A + E K LLTAAV + G Y DFIN+
Sbjct: 112 VTFGDYLVFIRALYAALKKEGK-------LLTAAVSSWN----GGAVSDSTLAYFDFINI 160
Query: 564 MTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQG-APKEKLMIGMPTYG 622
M+YD G W P + ++ + Y W ++G A K+KL++G+P YG
Sbjct: 161 MSYDATGPW-------WGDNPGQHSSYDDAVNDLNY----WNERGLASKDKLVLGLPFYG 209
Query: 623 RSFT 626
F
Sbjct: 210 YGFY 213
Score = 53.6 bits (129), Expect = 1e-07
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTA 798
V + I ++ + +G+DVD E P Y+ ++ L A + E K LLTA
Sbjct: 87 LVDKIINYVVSYNLDGIDVDLEGP--DVTFGDYLVFIRALYAALKKEGK-------LLTA 137
Query: 799 AVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQW 834
AV + G Y DFIN+M+YD G W
Sbjct: 138 AVSSWN----GGAVSDSTLAYFDFINIMSYDATGPW 169
Score = 34.0 bits (78), Expect = 0.28
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 863 YQKKLTVDLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQW 911
Y LLTAAV + G Y DFIN+M+YD G W
Sbjct: 125 YAALKKEGKLLTAAVSSWN----GGAVSDSTLAYFDFINIMSYDATGPW 169
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2.
Length = 49
Score = 62.1 bits (151), Expect = 2e-12
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 931 CEEEDGHISYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWP 979
C +P DC+ YY C R CP+ LVFNP CDWP
Sbjct: 3 CPGRGDG--LYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus cereus.
Length = 312
Score = 45.0 bits (107), Expect = 1e-04
Identities = 53/306 (17%), Positives = 93/306 (30%), Gaps = 93/306 (30%)
Query: 449 KILLAIGGWAFGSTPFKELTGNVFRMN-----QFVYESIEFLREHKFNGLDVDWE----Y 499
K+L++IGG G+V + FV + ++E+ F+GLD+D E
Sbjct: 75 KVLISIGG----------ANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNP 124
Query: 500 PRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVP--ASFEAIAAGYDVP----- 552
+ ++ LK+L+ + P +LT A P + A Y
Sbjct: 125 LNATPVITNLISALKQLKDHY--------GPNFILTMA-PETPYVQGGYAAYGGIWGAYL 175
Query: 553 ----EISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQG 608
+ L ++NV Y+ + + +G + Q + + + G
Sbjct: 176 PLIDNLRDDLTWLNVQYYN-----------SGGMGGCDGQSYSQGTADFLVALADMLLTG 224
Query: 609 APKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKDN 668
P F + K IG PAS G Y + + + D L K
Sbjct: 225 FPIAGNDR--------FPPLPADKVVIGLPASPSAAGGGYVSPSEV---IKALDCLMKGT 273
Query: 669 TTLVWDNEQQVPFAYKDDQWVGFDDERSLKMKMDWLKEDGYGGIMIWSVDMD-----DLS 723
+ P G+M WS++ D + S
Sbjct: 274 NCGSYYPAGGYP---------------------------SLRGLMTWSINWDATNNYEFS 306
Query: 724 TPFKEL 729
+
Sbjct: 307 KNYGAY 312
Score = 33.8 bits (78), Expect = 0.39
Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 36/189 (19%)
Query: 737 NQFVYESIEFLREHKFNGLDVDWE----YPRGADDRASYVNLLKELRLAFEGEAKTSGEP 792
+ FV + ++E+ F+GLD+D E + ++ LK+L+ + P
Sbjct: 96 DNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHY--------GP 147
Query: 793 RLLLTAAVP--ASFEAIAAGYDVP---------EISKYLDFINVMTYDFHGQWERQVGHN 841
+LT A P + A Y + L ++NV Y+ G
Sbjct: 148 NFILTMA-PETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSY 206
Query: 842 SPLKP-----LEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAAGYDVPEISKY 896
S L +L+T I G + L D ++ +PAS A GY P
Sbjct: 207 SQGTADFLVALADMLLTGFPIAGNDRF-PPLPADKVVI-GLPASPSAAGGGYVSPS---- 260
Query: 897 LDFINVMTY 905
+ I +
Sbjct: 261 -EVIKALDC 268
>gnl|CDD|119355 cd02876, GH18_SI-CLP, Stabilin-1 interacting chitinase-like protein
(SI-CLP) is a eukaryotic chitinase-like protein of
unknown function that interacts with the
endocytic/sorting transmembrane receptor stabilin-1 and
is secreted from the lysosome. SI-CLP has a glycosyl
hydrolase family 18 (GH18) domain but lacks a
chitin-binding domain. The catalytic amino acids of the
GH18 domain are not conserved in SI-CLP, similar to the
chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is
sorted to late endosomes and secretory lysosomes in
alternatively activated macrophages.
Length = 318
Score = 44.2 bits (105), Expect = 2e-04
Identities = 62/293 (21%), Positives = 114/293 (38%), Gaps = 63/293 (21%)
Query: 440 QLREKNPDIKIL--LAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD- 496
++R+ N +IKIL + GW++ + L + + + + +++ F+G+ ++
Sbjct: 59 EVRKANKNIKILPRVLFEGWSYQD--LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEV 116
Query: 497 ---WEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGY---- 549
D R + L+ L +T L L +P E
Sbjct: 117 WSQLAAYGVPDKRKELIQLVIHL-------GETLHSANLKLILVIPPPREKGNQNGLFTR 169
Query: 550 -DVPEISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQG 608
D +++ ++D ++MTYD+ ++ G N+PL V + + +
Sbjct: 170 KDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS------------WVRSCLELLLPES 215
Query: 609 APK-EKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCDFLKKD 667
K K+++G+ YG +TL GGG T E LK +
Sbjct: 216 GKKRAKILLGLNFYGNDYTL------------PGGGGAI--TGS-------EYLKLLKSN 254
Query: 668 NTTLVWDNEQQVP--FAYKDDQW---VGFDDERSLKMKMDWLKEDGYGGIMIW 715
L WD E+ F YK+ V + +S+++++D KE G GI IW
Sbjct: 255 KPKLQWD-EKSAEHFFEYKNKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIW 305
Score = 31.5 bits (72), Expect = 1.9
Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 893 ISKYLDFINVMTYDFHGQWERQVGHNSPLKPLEANV 928
++ ++D ++MTYD+ ++ G N+PL + + +
Sbjct: 175 LAPHVDGFSLMTYDYSSP--QRPGPNAPLSWVRSCL 208
Score = 30.0 bits (68), Expect = 5.6
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 744 IEFLREHKFNGLDVD----WEYPRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAA 799
+ +++ F+G+ ++ D R + L+ L +T L L
Sbjct: 101 VTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHL-------GETLHSANLKLILV 153
Query: 800 VPASFEAIAAGY-----DVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 844
+P E D +++ ++D ++MTYD+ ++ G N+PL
Sbjct: 154 IPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPL 201
>gnl|CDD|119363 cd06546, GH18_CTS3_chitinase, GH18 domain of CTS3 (chitinase 3), an
uncharacterized protein from the human fungal pathogen
Coccidioides posadasii. CTS3 has a chitinase-like
glycosyl hydrolase family 18 (GH18) domain; and has
homologs in bacteria as well as fungi.
Length = 256
Score = 43.1 bits (102), Expect = 4e-04
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 407 THVIY-AFGTLKDHKLTLNEDKEKDEAGKFEALMQ----LREKNPDIKILLAIGGWAFGS 461
TH+I A D + LN+ +F L L+ +K++ +GG A GS
Sbjct: 31 THLIVAALHINDDGNIHLNDHPPDHP--RFTTLWTELAILQSSG--VKVMGMLGGAAPGS 86
Query: 462 TPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAF 520
F L + ++ + + +R +GLD+D E P + L+ LR F
Sbjct: 87 --FSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEP---MSLDGIIRLIDRLRSDF 140
>gnl|CDD|119361 cd06544, GH18_narbonin, Narbonin is a plant 2S protein from the
globulin fraction of narbon bean (Vicia narbonensis L.)
cotyledons with unknown function. Narbonin has a
glycosyl hydrolase family 18 (GH18) domain without the
conserved catalytic residues and with no known enzymatic
activity. Narbonin amounts to up to 3% of the total
seed globulins of mature seeds and was thought to be a
storage protein but was found to degrade too slowly
during germination. This family also includes the
VfNOD32 nodulin from Vicia faba.
Length = 253
Score = 40.0 bits (94), Expect = 0.003
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 436 EALMQLREKNPDIKILLAIGGWA--FGSTPFKELTGNVFRMNQFVYESIEFL-REHKFNG 492
EA+ ++ ++P++K++++IGG TPF + + N S+ + + + +G
Sbjct: 59 EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAV--SSLTSIIQTYNLDG 116
Query: 493 LDVDWE-YPRGADDRASYV-NLLKELRLAFEGEAKTSGEPRLLLTAAVPASFEAIAAGYD 550
+D+D+E +P D + L+ EL K +G ++ A A E +
Sbjct: 117 IDIDYEHFPADPDTFVECIGQLITEL--------KNNG----VIKVASIAPSEDAEQSHY 164
Query: 551 VPEISKYLDFINVMTYDFHGQ 571
+ + Y D+I+ + Y F+
Sbjct: 165 LALYNAYGDYIDYVNYQFYNY 185
>gnl|CDD|119359 cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are
bacterial chitinases that hydrolyze the chitin core of
various asparagine (N)-linked glycans and glycoproteins.
The endo-beta-N-acetylglucosaminidases have a glycosyl
hydrolase family 18 (GH18) catalytic domain. Some
members also have an additional C-terminal glycosyl
hydrolase family 20 (GH20) domain while others have an
N-terminal domain of unknown function (pfam08522).
Members of this family include
endo-beta-N-acetylglucosaminidase S (EndoS) from
Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and
EndoH from Flavobacterium meningosepticum, and EndoE
from Enterococcus faecalis. EndoS is a secreted
endoglycosidase from Streptococcus pyogenes that
specifically hydrolyzes the glycan on human IgG between
two core N-acetylglucosamine residues. EndoE is a
secreted endoglycosidase, encoded by the ndoE gene in
Enterococcus faecalis, that hydrolyzes the glycan on
human RNase B.
Length = 255
Score = 34.7 bits (80), Expect = 0.16
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 749 EHKFNGLDVDWEY------PRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPA 802
++ +G+D D EY ++V L+KELR K LLT
Sbjct: 102 KYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDK-------LLTIDGYG 154
Query: 803 SFEAIAAGYDVPEISKYLDFINVMTY-DFHGQWERQVGHNSPLKPLEVLLIT 853
A D E+S Y+D++ Y +R NSP P E ++ T
Sbjct: 155 Q----ALSNDGEEVSPYVDYVIYQYYGSSSSSTQRNWNTNSPKIPPEKMVYT 202
Score = 34.7 bits (80), Expect = 0.18
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 487 EHKFNGLDVDWEY------PRGADDRASYVNLLKELRLAFEGEAKTSGEPRLLLTAAVPA 540
++ +G+D D EY ++V L+KELR K LLT
Sbjct: 102 KYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDK-------LLTIDGYG 154
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTY-DFHGQWERQVGHNSPLKPLEG 587
A D E+S Y+D++ Y +R NSP P E
Sbjct: 155 Q----ALSNDGEEVSPYVDYVIYQYYGSSSSSTQRNWNTNSPKIPPEK 198
>gnl|CDD|119366 cd06549, GH18_trifunctional, GH18 domain of an uncharacterized
family of bacterial proteins, which share a common
three-domain architecture: an N-terminal glycosyl
hydrolase family 18 (GH18) domain, a glycosyl
transferase family 2 domain, and a C-terminal
polysaccharide deacetylase domain.
Length = 298
Score = 33.5 bits (77), Expect = 0.42
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 467 LTGNVFRMN----QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG 522
+ +F+ +L ++ +G+ +D+E ADD YV L ELR
Sbjct: 78 NIARLLADPSARAKFIANIAAYLERNQADGIVLDFE-ELPADDLPKYVAFLSELRRRL-- 134
Query: 523 EAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQWERQVGHNSPL 582
LT VPA A +++ +++ D + +M YD H Q
Sbjct: 135 -----PAQGKQLTVTVPAD----EADWNLKALARNADKLILMAYDEHYQ-------GGAP 178
Query: 583 KPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYG 622
P+ ++ + + K P EKL++ + +YG
Sbjct: 179 GPIASQDWFES--NLAQAVK-----KLPPEKLIVALGSYG 211
Score = 29.7 bits (67), Expect = 7.5
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 729 LTGNVFRMN----QFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKELRLAFEG 784
+ +F+ +L ++ +G+ +D+E ADD YV L ELR
Sbjct: 78 NIARLLADPSARAKFIANIAAYLERNQADGIVLDFE-ELPADDLPKYVAFLSELRRRL-- 134
Query: 785 EAKTSGEPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQ 833
LT VPA A +++ +++ D + +M YD H Q
Sbjct: 135 -----PAQGKQLTVTVPAD----EADWNLKALARNADKLILMAYDEHYQ 174
>gnl|CDD|236510 PRK09428, pssA, phosphatidylserine synthase; Provisional.
Length = 451
Score = 33.2 bits (77), Expect = 0.78
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Query: 428 EKDEAGK--FEALMQLREKNP--DIKIL 451
E DEAG+ +AL Q +++NP DIK+L
Sbjct: 59 EDDEAGREILDALYQAKQQNPELDIKVL 86
>gnl|CDD|226000 COG3469, COG3469, Chitinase [Carbohydrate transport and
metabolism].
Length = 332
Score = 31.8 bits (72), Expect = 1.8
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 739 FVYESIEFLREHKFNGLDVDWEYPR--GADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 796
FV E I + + F+GLD+D E AD++ LK ++ ++ + K +
Sbjct: 122 FVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKN-----FFI 176
Query: 797 TAAVPASFEAIAAGYD--VPEISKYLDFINVMTYDFHG---------QWERQVGHNSPLK 845
T A + Y + E+ Y DFI Y+ G W Q N +K
Sbjct: 177 TMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQN--NDMVK 234
Query: 846 PLEVLLITTLSIPGATSYQKKLTVDLLLTAAVPASFEAIAAGY 888
L T S+ T +K+ D +P++ +A A GY
Sbjct: 235 E-SFLYYLTFSLANGTRGFEKIPADKFAI-GLPSNVDAAATGY 275
Score = 29.5 bits (66), Expect = 8.7
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 477 FVYESIEFLREHKFNGLDVDWEYPR--GADDRASYVNLLKELRLAFEGEAKTSGEPRLLL 534
FV E I + + F+GLD+D E AD++ LK ++ ++ + K +
Sbjct: 122 FVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKN-----FFI 176
Query: 535 TAAVPASFEAIAAGYD--VPEISKYLDFINVMTYDFHG---------QWERQV 576
T A + Y + E+ Y DFI Y+ G W Q
Sbjct: 177 TMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQN 229
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 31.5 bits (72), Expect = 2.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 684 KDDQWVGFDDERSLKMKMDWLKEDGYGG 711
D +W F+D+ + +E+ +GG
Sbjct: 277 DDGKWYKFNDDVVTPFDPNDAEEECFGG 304
>gnl|CDD|227930 COG5643, COG5643, Protein containing a metal-binding domain shared
with formylmethanofuran dehydrogenase subunit E [General
function prediction only].
Length = 685
Score = 31.7 bits (72), Expect = 2.6
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 665 KKDNTTLVWDNEQQVPFAYKDDQWVGFDDERSLK------MKMDWLKEDGYGGIMIWSVD 718
K D D K + +VGF+ + + W G ++ D
Sbjct: 228 KDDVLIEALDLTPG-----KGNSFVGFNTTAEGEDTGAVGAFIRWDPNTNTGKAIVMKFD 282
Query: 719 MDDLSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVDWEYPRGADDRASYVNLLKEL 778
+ +K+ TGN ++ E KFN W + D S V ++ L
Sbjct: 283 WQAVINKYKQETGNS------------YVSELKFNL----WLIKKVTPDPESLVTIVSAL 326
Query: 779 RL--AFEGEAKTSGEPRLLLTAAVPA 802
+ + +GE + V
Sbjct: 327 DILTKTQYYYLLAGENPYNVLGLVAP 352
>gnl|CDD|236653 PRK10137, PRK10137, alpha-glucosidase; Provisional.
Length = 786
Score = 31.3 bits (71), Expect = 3.0
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 568 FHGQWERQVGHNSPLKPLEGATSYQKKLTVEYSAKEWVKQGAPKEKLMIGMPTYGRSFTL 627
+H W R HN P GAT + T VK+G +E G+ Y R
Sbjct: 449 YHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQS-GLNNYARVVEK 507
Query: 628 VDPTKFDIGAPASGGGEPGKYTAEA-GFMSYYEVCDFLKKDNTTLVWDNEQQVPFA 682
+I A + E G+ A GF+ ++ ++ W V FA
Sbjct: 508 GQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDW----TVKFA 559
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component
[Chromatin structure and dynamics].
Length = 1163
Score = 31.0 bits (70), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 71 DPKYK-VSLLVVRSSKSSVKANKDDSKYR 98
D KY S L +S +S K +D +KYR
Sbjct: 955 DIKYIAKSELFEMNSAASSKRKQDQTKYR 983
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 30.3 bits (69), Expect = 5.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 450 ILLAIGGWAFGSTPFKELTGNVFRMNQFVYESIEFLREHKFNGLDVD 496
+++AIG G + NQ V +++ FL E+K G +
Sbjct: 627 VVVAIGADKNGGLKLEGG-------NQNVIKALPFLEEYKNKGTALK 666
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 29.6 bits (67), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 541 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER 574
S +A AAG D+ E++ F++V D+ WE+
Sbjct: 57 SEKAFAAGADIKEMADL-SFMDVYKGDYITNWEK 89
Score = 29.6 bits (67), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 803 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER 836
S +A AAG D+ E++ F++V D+ WE+
Sbjct: 57 SEKAFAAGADIKEMADL-SFMDVYKGDYITNWEK 89
Score = 29.6 bits (67), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 880 SFEAIAAGYDVPEISKYLDFINVMTYDFHGQWER 913
S +A AAG D+ E++ F++V D+ WE+
Sbjct: 57 SEKAFAAGADIKEMADL-SFMDVYKGDYITNWEK 89
>gnl|CDD|147159 pfam04857, CAF1, CAF1 family ribonuclease. The major pathways of
mRNA turnover in eukaryotes initiate with shortening of
the polyA tail. CAF1 encodes a critical component of the
major cytoplasmic deadenylase in yeast. Both Caf1p is
required for normal mRNA deadenylation in vivo and
localises to the cytoplasm. Caf1p copurifies with a
Ccr4p-dependent polyA-specific exonuclease activity.
Some members of this family include and inserted RNA
binding domain pfam01424. This family of proteins is
related to other exonucleases pfam00929 (Bateman A pers.
obs.). The crystal structure of Saccharomyces cerevisiae
Pop2 has been resolved at 2.3 Angstrom#resolution.
Length = 235
Score = 29.1 bits (66), Expect = 9.4
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 463 PFKELTGNVFRMNQFVYESIEFLREHKFN 491
F SIEFL + F+
Sbjct: 86 NFSLFNLEEDFYAP---SSIEFLAKQGFD 111
Score = 29.1 bits (66), Expect = 9.4
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 725 PFKELTGNVFRMNQFVYESIEFLREHKFN 753
F SIEFL + F+
Sbjct: 86 NFSLFNLEEDFYAP---SSIEFLAKQGFD 111
>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 288
Score = 29.4 bits (66), Expect = 9.9
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 162 EQLKKANPKLKTLL----AIGKLSLEELNGI-PRANNAKDVDWAKVAGNVEVETVTKPAP 216
EQL+ A ++ ++ A GKL+ R + + D+ A ++ +E V +
Sbjct: 35 EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPEKLE 94
Query: 217 IKIDIF 222
+K +F
Sbjct: 95 LKKAVF 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,926,712
Number of extensions: 5162946
Number of successful extensions: 4512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4391
Number of HSP's successfully gapped: 103
Length of query: 996
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 890
Effective length of database: 6,236,078
Effective search space: 5550109420
Effective search space used: 5550109420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)