BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13136
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 175/297 (58%), Gaps = 12/297 (4%)
Query: 312 EEMARKFGFEEAYFKG--RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILS 369
EE F +E Y K R + + Q+W LF+ P SS A+II +VSV I ISI+S
Sbjct: 139 EEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVS 198
Query: 370 FCLKTHPDMRVP--VIHNITVRTTHNTSAWTLDKTQ-TNAHDAFFYIECLCNAWFTFEIL 426
FCL+T P R +H V T H S T+ Q T+ D FF +E LC WF+FE L
Sbjct: 199 FCLETLPIFRDENEDMHGGGV-TFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFL 257
Query: 427 MRFISSPRKCEFIKASVNVIDYIATLSFYIDLLL---QKFASHLENAD-ILEFFSIIRIM 482
+RF + P K F +N+ID +A + +Y+ + L K +N +++ F I+RI+
Sbjct: 258 VRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRIL 317
Query: 483 RLFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPHNDFNS 542
R+FKL+RHS GL+IL QT +AS +E +S VY+AE + + + F S
Sbjct: 318 RIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD--SQFPS 375
Query: 543 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599
IP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLTIALPVPVIVSNF +Y
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
S VY+AE + + + F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLT
Sbjct: 359 SAVYFAEADERD--SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLT 416
Query: 203 IALPVPVIVSNFAMYY 218
IALPVPVIVSNF +Y
Sbjct: 417 IALPVPVIVSNFNYFY 432
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 175/297 (58%), Gaps = 12/297 (4%)
Query: 312 EEMARKFGFEEAYFKG--RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILS 369
EE F +E Y K R + + Q+W LF+ P SS A+II +VSV I ISI+S
Sbjct: 139 EEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVS 198
Query: 370 FCLKTHPDMRVP--VIHNITVRTTHNTSAWTLDKTQ-TNAHDAFFYIECLCNAWFTFEIL 426
FCL+T P R +H V T H S T+ Q T+ D FF +E LC W++FE L
Sbjct: 199 FCLETLPIFRDENEDMHGGGV-TFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWWSFEFL 257
Query: 427 MRFISSPRKCEFIKASVNVIDYIATLSFYIDLLL---QKFASHLENAD-ILEFFSIIRIM 482
+RF + P K F +N+ID +A + +Y+ + L K +N +++ F I+RI+
Sbjct: 258 VRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRIL 317
Query: 483 RLFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPHNDFNS 542
R+FKL+RHS GL+IL QT +AS +E +S VY+AE + + + F S
Sbjct: 318 RIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD--SQFPS 375
Query: 543 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599
IP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLTIALPVPVIVSNF +Y
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
S VY+AE + + + F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLT
Sbjct: 359 SAVYFAEADERD--SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLT 416
Query: 203 IALPVPVIVSNFAMYY 218
IALPVPVIVSNF +Y
Sbjct: 417 IALPVPVIVSNFNYFY 432
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 173/302 (57%), Gaps = 18/302 (5%)
Query: 312 EEMARKFGFEEAYFKG--RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILS 369
EE F +E Y K R + + Q+W LF+ P SS A+II +VSV I ISI+S
Sbjct: 120 EEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVS 179
Query: 370 FCLKTHPDMRVP--VIHNITVRTTHNTSAWTLDKTQ-TNAHDAFFYIECLCNAWFTFEIL 426
FCL+T P R +H V T H S T+ Q T+ D FF +E LC WF+FE L
Sbjct: 180 FCLETLPIFRDENEDMHGGGV-TFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFL 238
Query: 427 MRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENAD---------ILEFFS 477
+RF + P K F +N+ID +A + ++I L + A E+A IL
Sbjct: 239 VRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTE-LAEKPEDAQQGQQAMSLAILRVIR 297
Query: 478 IIRIMRLFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPH 537
++R+ R+FKL+RHS GL+IL QT +AS +E +S VY+AE + +
Sbjct: 298 LVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD-- 355
Query: 538 NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597
+ F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLTIALPVPVIVSNF
Sbjct: 356 SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 415
Query: 598 YY 599
+Y
Sbjct: 416 FY 417
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
S VY+AE + + + F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLT
Sbjct: 344 SAVYFAEADERD--SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLT 401
Query: 203 IALPVPVIVSNFAMYY 218
IALPVPVIVSNF +Y
Sbjct: 402 IALPVPVIVSNFNYFY 417
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 173/302 (57%), Gaps = 18/302 (5%)
Query: 312 EEMARKFGFEEAYFKG--RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILS 369
EE F +E Y K R + + Q+W LF+ P SS A+II +VSV I ISI+S
Sbjct: 120 EEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVS 179
Query: 370 FCLKTHPDMRVP--VIHNITVRTTHNTSAWTLDKTQ-TNAHDAFFYIECLCNAWFTFEIL 426
FCL+T P R +H V T H S T+ Q T+ D FF +E LC WF+FE L
Sbjct: 180 FCLETLPIFRDENEDMHGGGV-TFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFL 238
Query: 427 MRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENAD---------ILEFFS 477
+RF + P K F +N+ID +A + ++I L + A E+A IL
Sbjct: 239 VRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTE-LAEKPEDAQQGQQAMSLAILRVIR 297
Query: 478 IIRIMRLFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPH 537
++R+ R+FKL+RHS GL+IL QT +AS +E +S VY+AE + +
Sbjct: 298 LVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD-- 355
Query: 538 NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597
+ F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLTIALPVPVIVSNF
Sbjct: 356 SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 415
Query: 598 YY 599
+Y
Sbjct: 416 FY 417
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
S VY+AE + + + F SIP WWA+V+MTTVGYGDM P T G VG+LCA+AGVLT
Sbjct: 344 SAVYFAEADERD--SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLT 401
Query: 203 IALPVPVIVSNFAMYY 218
IALPVPVIVSNF +Y
Sbjct: 402 IALPVPVIVSNFNYFY 417
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVL 51
+GKLHYPTDVCGPLFEEELEFWGLD+ + + + + HRDTQETLAVL
Sbjct: 66 SGKLHYPTDVCGPLFEEELEFWGLDSNQVE-PCCWMTYTAHRDTQETLAVL 115
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 154 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSN 213
+P++ S+ LWWA+VT TTVGYGD+ P T +G +G L G+ + L + + +
Sbjct: 158 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
Query: 214 F 214
F
Sbjct: 218 F 218
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 535 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSN 594
+P++ S+ LWWA+VT TTVGYGD+ P T +G +G L G+ + L + + +
Sbjct: 158 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
Query: 595 F 595
F
Sbjct: 218 F 218
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCAL 197
V V+L Y P F SIP +WWA+VT++T GYGD P+++ G + +
Sbjct: 139 VLFAVALAAYVIERDIQPEK-FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMM 197
Query: 198 AGVLTIALPVPVIVSNF 214
+G+ L ++ + F
Sbjct: 198 SGIGIFGLWAGILATGF 214
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 484 LFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPHNDFNSI 543
L K R S+ +L + A+ A Y ER P F SI
Sbjct: 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIER-DIQPEK-FGSI 162
Query: 544 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
P +WWA+VT++T GYGD P+++ G + ++G+ L ++ + F
Sbjct: 163 PQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 154 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSN 213
+P++ S+ LWWA+VT TTVGYGD+ P T +G +G L G+ + L + + +
Sbjct: 170 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
Query: 214 F 214
F
Sbjct: 230 F 230
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 535 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSN 594
+P++ S+ LWWA+VT TTVGYGD+ P T +G +G L G+ + L + + +
Sbjct: 170 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
Query: 595 F 595
F
Sbjct: 230 F 230
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 158 DFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
+ N+ P LWWA+VT TTVGYGD+ P T +G + ++ L G+ I + I + F
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFF 96
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 539 DFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
+ N+ P LWWA+VT TTVGYGD+ P T +G + ++ L G+ I + I + F
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFF 96
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW+++T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW+++T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 24 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSF 81
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 82 GLVTAALATWF 92
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 24 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSF 81
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 82 GLVTAALATWF 92
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 53 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 110
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 111 GLVTAALATWF 121
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 53 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 110
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 111 GLVTAALATWF 121
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 52 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 109
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 110 GLVTAALATWF 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 52 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 109
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 110 GLVTAALATWF 120
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LACLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LACLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 83 GLVTAALATWF 93
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 82
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 83 GLVTAALATWF 93
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 24 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 81
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 82 GLVTAALATWF 92
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 24 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 81
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 82 GLVTAALATWF 92
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 26 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 83
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 84 GLVTAALATWF 94
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 26 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 83
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 84 GLVTAALATWF 94
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P S P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 69 LAVLAER--GAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSY 126
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 127 GLVFAAVATWF 137
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P S P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 69 LAVLAER--GAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSY 126
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 127 GLVFAAVATWF 137
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSA 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSA 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T T VGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T T VGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWWA T TTV YGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWWA T TTV YGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
S + L+W VT+ TVGYGD +P+T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAV 74
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
S + L+W VT+ TVGYGD +P+T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 148 AERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
AER P S P +WW++ T TTVGYGD P T G V AG+ AL
Sbjct: 29 AER--GAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT 86
Query: 208 PVIVSNF 214
+ ++F
Sbjct: 87 AALATDF 93
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 529 AERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
AER P S P +WW++ T TTVGYGD P T G V AG+ AL
Sbjct: 29 AER--GAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT 86
Query: 589 PVIVSNF 595
+ ++F
Sbjct: 87 AALATDF 93
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 81
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 81
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
LW+++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
LW+++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 164 LGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
+ L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAV 91
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 545 LGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
+ L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAV 91
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSF 103
Query: 204 ALPVPVIVSNF 214
L + + F
Sbjct: 104 GLVTAALATWF 114
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 46 LAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSF 103
Query: 585 ALPVPVIVSNF 595
L + + F
Sbjct: 104 GLVTAALATWF 114
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 50 LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV 91
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V
Sbjct: 50 LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV 91
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 207
S + L+W VT+ VGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPV 588
S + L+W VT+ VGYGD +P T +GM+ + G+ T A+ V
Sbjct: 28 SWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVGYGD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG+GD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG+GD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVGYG+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVGYG+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVGYG+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVGYG+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215
++++ T+ TVGYGDM P+T + L G+ IAL ++ + FA
Sbjct: 101 FFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
++++ T+ TVGYGDM P+T + L G+ IAL ++ + FA
Sbjct: 101 FFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215
++++ T+ TVGYGDM P+T + L G+ IAL ++ + FA
Sbjct: 101 FFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
++++ T+ TVGYGDM P+T + L G+ IAL ++ + FA
Sbjct: 101 FFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 165 GLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 208
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILP 98
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 546 GLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 589
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILP 98
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 160 NSIPLGL----WWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 205
N P G ++++ T+ TVGYGDM P+T ++ L G+ +IAL
Sbjct: 73 NQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 541 NSIPLGL----WWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 586
N P G ++++ T+ TVGYGDM P+T ++ L G+ +IAL
Sbjct: 73 NQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 165 GLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 208
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILP 98
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 546 GLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 589
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILP 98
>pdb|4DXW|A Chain A, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|B Chain B, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|C Chain C, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
pdb|4DXW|D Chain D, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel
Length = 229
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 420 WFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSII 479
+F EIL+RFI +K +F K+ N+ D T+ I L+ S F ++
Sbjct: 54 FFVIEILIRFIGEKQKADFFKSGWNIFD---TVIVAISLIPIPNNSS---------FLVL 101
Query: 480 RIMRLFKLTRHSSGLKILMQTFRA 503
R++R+F++ R S + L Q A
Sbjct: 102 RLLRIFRVLRLISVIPELKQIIEA 125
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG GD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG GD +P+T Y+ + +G + L + + +P I+SN
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGL 24
TGKLHYP C ++EEL F+GL
Sbjct: 60 TGKLHYPRHECISAYDEELAFFGL 83
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 93
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 93
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSN 213
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSN 594
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 166 LWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSN 213
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 57 LYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 113
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 547 LWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSN 594
L++++VT+TTVG G+ +P+T Y+ + +G + L + + +P I+SN
Sbjct: 57 LYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 113
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 165 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 214
L++++VT+TTVG G+ P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 546 GLWWALVTMTTVGYGDMAPKT---------YVGMFVGALCALAGVLTIALPVPVIVSNF 595
L++++VT+TTVG G+ P+T Y+ + +G + L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGL 24
TGKLHYP C +++EL F+G+
Sbjct: 73 TGKLHYPRYECISAYDDELAFYGI 96
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGL 24
TGKLHYP C +++EL F+G+
Sbjct: 101 TGKLHYPRYECISAYDDELAFYGI 124
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGL 24
TGKLHYP C +++EL F+G+
Sbjct: 95 TGKLHYPRYECISAYDDELAFYGI 118
>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 267
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 47 TLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWS 93
T AVL+R D D E+ + EE AR F +EA +G L++ +K P W+
Sbjct: 223 TAAVLERFDRDAERLA-EESARLFVSDEAR-EGMLAFLEKRSPN-WT 266
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 144 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY 178
L AER P + P LWWA T TTVGY
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWACETATTVGY 57
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 525 LVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY 559
L AER P + P LWWA T TTVGY
Sbjct: 25 LAVLAER--GAPGAQLITYPRALWWACETATTVGY 57
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 2 GKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSII 39
G L+ T++CGP ++ E WG P+ ++ R +
Sbjct: 130 GILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTL 167
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>pdb|3PT1|A Chain A, Structure Of Duf89 From Saccharomyces Cerevisiae
Co-Crystallized With F6p
Length = 471
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEK 60
+GK+ + D + EL++W LDA E+ + I H+D Q++ V+ + DL+ K
Sbjct: 338 SGKIEFRED---SFWTTELDYWNLDAN----ETKYHGSILHKDLQKSNLVIFKGDLNYRK 390
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAARLIYARF 135
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595
++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 87 FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAARLIYARF 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,136,485
Number of Sequences: 62578
Number of extensions: 693514
Number of successful extensions: 1456
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 149
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)