Query psy13136
Match_columns 695
No_of_seqs 526 out of 3029
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:29:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 3.7E-64 8E-69 524.9 28.8 220 401-622 233-457 (477)
2 KOG4390|consensus 100.0 7.9E-46 1.7E-50 369.8 -5.7 197 405-606 224-420 (632)
3 KOG1545|consensus 100.0 9.6E-43 2.1E-47 345.3 9.6 290 312-603 148-454 (507)
4 KOG1545|consensus 100.0 1.7E-34 3.6E-39 286.8 0.5 80 140-221 374-453 (507)
5 KOG2302|consensus 100.0 2.2E-28 4.7E-33 266.7 22.7 342 158-611 1316-1700(1956)
6 KOG1419|consensus 100.0 1.6E-28 3.5E-33 257.0 19.8 258 330-613 72-340 (654)
7 KOG2302|consensus 99.9 5.5E-26 1.2E-30 248.1 22.8 265 328-622 1106-1415(1956)
8 KOG2301|consensus 99.9 2.7E-25 5.9E-30 266.5 15.2 335 156-603 1030-1408(1592)
9 KOG3713|consensus 99.9 8.6E-26 1.9E-30 237.2 7.0 224 1-239 101-455 (477)
10 KOG2301|consensus 99.9 8.5E-25 1.8E-29 262.3 10.9 372 157-599 273-666 (1592)
11 PLN03192 Voltage-dependent pot 99.9 1.2E-22 2.6E-27 241.5 20.6 232 340-601 50-309 (823)
12 KOG0498|consensus 99.8 1.7E-19 3.7E-24 202.6 18.0 262 343-623 69-375 (727)
13 KOG4390|consensus 99.8 1.3E-21 2.9E-26 196.6 -0.9 204 1-226 100-421 (632)
14 PF00520 Ion_trans: Ion transp 99.8 2.7E-19 5.9E-24 176.0 14.5 179 412-591 1-200 (200)
15 KOG0501|consensus 99.7 4.4E-17 9.5E-22 171.6 14.3 240 351-623 216-504 (971)
16 KOG1420|consensus 99.7 5.1E-18 1.1E-22 178.0 5.2 183 402-597 156-343 (1103)
17 KOG0500|consensus 99.6 1.9E-14 4.1E-19 150.8 12.5 183 405-599 26-239 (536)
18 KOG1419|consensus 99.5 5E-15 1.1E-19 156.4 5.3 83 140-222 246-330 (654)
19 KOG4404|consensus 99.5 5.1E-13 1.1E-17 133.4 16.6 79 516-603 169-255 (350)
20 PLN03223 Polycystin cation cha 99.4 2.7E-11 5.9E-16 139.9 21.1 189 410-601 1178-1428(1634)
21 KOG0499|consensus 99.3 8.8E-11 1.9E-15 125.2 20.3 178 407-597 260-457 (815)
22 PF07885 Ion_trans_2: Ion chan 99.3 2.3E-11 5E-16 101.1 10.6 76 516-596 3-78 (79)
23 KOG1418|consensus 99.2 2.1E-12 4.6E-17 143.0 2.7 64 157-220 111-174 (433)
24 PF07885 Ion_trans_2: Ion chan 99.2 7.4E-12 1.6E-16 104.1 4.6 73 138-215 6-78 (79)
25 PRK10537 voltage-gated potassi 99.1 1.7E-09 3.7E-14 116.8 17.2 114 473-595 107-221 (393)
26 PRK10537 voltage-gated potassi 99.0 2.5E-10 5.4E-15 123.2 3.4 73 140-215 149-222 (393)
27 KOG3599|consensus 98.9 4.7E-08 1E-12 113.1 20.7 194 407-604 465-688 (798)
28 KOG3684|consensus 98.9 9.8E-08 2.1E-12 100.2 20.4 87 510-597 256-342 (489)
29 PF08016 PKD_channel: Polycyst 98.9 7.2E-08 1.6E-12 106.7 20.1 182 411-597 214-424 (425)
30 PLN03192 Voltage-dependent pot 98.7 1.5E-08 3.2E-13 121.3 6.3 56 163-218 252-307 (823)
31 TIGR00870 trp transient-recept 98.7 2E-06 4.3E-11 102.3 23.3 193 409-604 390-624 (743)
32 KOG1420|consensus 98.6 1.4E-08 3E-13 107.9 0.6 74 141-215 264-342 (1103)
33 PF01007 IRK: Inward rectifier 98.3 2.1E-06 4.7E-11 90.5 10.3 90 508-597 38-141 (336)
34 KOG1418|consensus 98.2 3.6E-06 7.9E-11 93.1 7.6 66 537-602 110-175 (433)
35 KOG3684|consensus 98.0 3E-06 6.6E-11 89.2 3.7 73 142-215 269-341 (489)
36 KOG3193|consensus 98.0 2.3E-05 5E-10 83.5 8.9 177 407-596 89-271 (1087)
37 KOG3609|consensus 97.9 0.00032 6.8E-09 79.8 17.4 203 407-610 383-626 (822)
38 KOG3614|consensus 97.9 0.00085 1.8E-08 79.6 19.5 234 334-602 779-1049(1381)
39 KOG0498|consensus 97.8 1.6E-05 3.5E-10 90.8 4.4 58 162-219 295-352 (727)
40 PF01007 IRK: Inward rectifier 97.7 1.7E-05 3.6E-10 83.9 3.3 61 158-218 81-143 (336)
41 KOG4404|consensus 97.7 7.6E-05 1.7E-09 75.6 6.1 56 541-596 79-134 (350)
42 KOG0510|consensus 97.6 0.0052 1.1E-07 69.6 19.7 161 434-601 587-763 (929)
43 KOG3676|consensus 97.3 0.068 1.5E-06 61.1 24.7 98 505-602 540-654 (782)
44 KOG3827|consensus 97.2 0.0016 3.4E-08 67.9 9.2 91 507-597 65-169 (400)
45 PF00520 Ion_trans: Ion transp 96.6 0.00066 1.4E-08 66.1 0.6 54 157-210 141-200 (200)
46 KOG0501|consensus 96.5 0.0028 6.1E-08 68.8 5.0 57 162-218 424-480 (971)
47 KOG3533|consensus 96.0 1.4 3E-05 52.9 22.6 127 482-608 2396-2582(2706)
48 KOG3193|consensus 95.6 0.0049 1.1E-07 66.3 1.4 44 160-203 216-259 (1087)
49 PF02214 BTB_2: BTB/POZ domain 95.4 0.0042 9.2E-08 53.2 0.0 31 2-33 64-94 (94)
50 KOG3827|consensus 94.8 0.025 5.5E-07 59.2 3.7 81 137-217 76-170 (400)
51 PF00060 Lig_chan: Ligand-gate 93.5 0.023 4.9E-07 52.8 0.2 79 138-217 12-99 (148)
52 KOG4440|consensus 93.0 0.08 1.7E-06 58.3 3.4 78 137-214 579-666 (993)
53 PF00060 Lig_chan: Ligand-gate 92.7 0.13 2.8E-06 47.7 4.0 57 541-598 43-99 (148)
54 KOG0500|consensus 91.4 0.24 5.3E-06 53.6 4.7 54 162-216 184-237 (536)
55 COG0168 TrkG Trk-type K+ trans 90.8 12 0.00026 42.2 17.7 49 542-590 424-481 (499)
56 KOG1052|consensus 90.3 0.13 2.8E-06 60.5 1.6 79 137-216 351-435 (656)
57 PLN03223 Polycystin cation cha 89.7 20 0.00044 44.2 18.6 22 406-427 1211-1232(1634)
58 KOG1054|consensus 89.2 0.17 3.8E-06 55.5 1.3 54 161-215 595-648 (897)
59 KOG0499|consensus 84.0 0.93 2E-05 50.3 3.4 55 160-215 402-456 (815)
60 KOG1053|consensus 83.1 0.98 2.1E-05 52.3 3.3 121 67-215 528-663 (1258)
61 KOG3733|consensus 82.2 60 0.0013 35.1 15.5 107 481-598 387-510 (566)
62 PF07077 DUF1345: Protein of u 77.6 70 0.0015 30.8 15.8 52 538-589 128-179 (180)
63 KOG1052|consensus 73.0 11 0.00025 44.2 8.4 57 540-597 379-435 (656)
64 KOG4440|consensus 72.7 7.9 0.00017 43.4 6.3 83 513-595 574-666 (993)
65 PF10011 DUF2254: Predicted me 72.5 1.1E+02 0.0023 33.3 15.1 105 492-597 45-155 (371)
66 KOG3676|consensus 70.9 6.6 0.00014 45.5 5.4 61 160-220 585-653 (782)
67 KOG1053|consensus 67.3 62 0.0013 38.4 11.9 52 541-596 608-663 (1258)
68 PF10710 DUF2512: Protein of u 61.4 1.1E+02 0.0023 28.1 10.3 25 541-566 28-56 (136)
69 PRK10750 potassium transporter 61.2 55 0.0012 36.9 10.3 47 542-588 421-474 (483)
70 PF06512 Na_trans_assoc: Sodiu 60.6 2.6 5.7E-05 42.7 -0.2 30 327-363 210-239 (239)
71 PRK05482 potassium-transportin 55.0 1.3E+02 0.0028 34.3 11.7 51 540-590 449-502 (559)
72 PF05934 MCLC: Mid-1-related c 54.9 2E+02 0.0043 32.1 12.6 23 409-431 207-229 (549)
73 KOG4220|consensus 54.2 1.7E+02 0.0036 32.0 11.7 37 421-460 87-123 (503)
74 COG1226 Kch Kef-type K+ transp 50.9 8.9 0.00019 36.8 1.8 51 155-205 111-161 (212)
75 KOG3643|consensus 50.4 1E+02 0.0022 33.7 9.5 49 549-597 280-330 (459)
76 TIGR00870 trp transient-recept 48.6 5.4E+02 0.012 30.7 19.8 24 407-430 420-443 (743)
77 PF05568 ASFV_J13L: African sw 48.6 94 0.002 28.3 7.5 39 178-216 14-54 (189)
78 PF08412 Ion_trans_N: Ion tran 47.8 40 0.00088 27.5 4.7 55 314-374 14-68 (77)
79 TIGR00933 2a38 potassium uptak 41.5 58 0.0013 35.6 6.5 41 540-580 229-271 (390)
80 COG4907 Predicted membrane pro 41.4 22 0.00049 38.6 3.0 12 98-109 294-305 (595)
81 KOG1054|consensus 39.9 31 0.00067 38.8 3.8 54 542-596 595-648 (897)
82 KOG3609|consensus 39.2 3.3E+02 0.0072 32.4 12.0 86 400-499 408-498 (822)
83 COG4325 Predicted membrane pro 38.9 5.4E+02 0.012 27.9 14.2 49 542-592 132-185 (464)
84 TIGR00933 2a38 potassium uptak 38.8 1.2E+02 0.0026 33.2 8.3 40 541-580 347-389 (390)
85 COG3817 Predicted membrane pro 38.6 88 0.0019 31.5 6.3 41 539-580 29-69 (313)
86 PF06305 DUF1049: Protein of u 37.5 87 0.0019 24.4 5.3 15 582-596 28-42 (68)
87 KOG3599|consensus 35.5 6.6E+02 0.014 30.3 14.1 27 406-432 496-522 (798)
88 PF02386 TrkH: Cation transpor 35.3 1.2E+02 0.0027 32.5 7.7 38 543-580 295-338 (354)
89 PF05568 ASFV_J13L: African sw 34.0 3.7E+02 0.0081 24.6 10.2 23 575-597 32-54 (189)
90 KOG3088|consensus 33.4 5.7E+02 0.012 26.5 11.2 17 570-586 238-254 (313)
91 COG0168 TrkG Trk-type K+ trans 28.4 5.4E+02 0.012 29.2 11.4 49 541-590 197-252 (499)
92 KOG2082|consensus 27.8 1.1E+03 0.024 28.2 13.5 59 523-600 587-648 (1075)
93 COG1226 Kch Kef-type K+ transp 26.2 45 0.00097 31.8 2.2 52 535-586 110-161 (212)
94 PF08016 PKD_channel: Polycyst 25.6 9.1E+02 0.02 26.5 12.7 48 478-525 308-355 (425)
95 KOG2243|consensus 24.5 1.9E+02 0.0042 36.1 6.9 118 483-600 4794-4927(5019)
96 PF15086 UPF0542: Uncharacteri 23.8 3.1E+02 0.0066 22.1 5.8 24 565-588 17-40 (74)
97 PF05297 Herpes_LMP1: Herpesvi 23.3 27 0.00059 35.5 0.0 19 354-372 26-44 (381)
98 PF07077 DUF1345: Protein of u 21.7 1.3E+02 0.0028 29.0 4.3 55 154-208 125-179 (180)
99 KOG1608|consensus 21.6 9.3E+02 0.02 25.1 13.4 17 549-565 264-280 (374)
100 PF07543 PGA2: Protein traffic 21.0 3E+02 0.0065 25.4 6.3 17 570-586 16-33 (140)
101 PRK10750 potassium transporter 20.9 5E+02 0.011 29.3 9.4 19 541-559 205-223 (483)
102 PF15050 SCIMP: SCIMP protein 20.9 2.5E+02 0.0054 24.9 5.3 17 581-597 16-32 (133)
No 1
>KOG3713|consensus
Probab=100.00 E-value=3.7e-64 Score=524.92 Aligned_cols=220 Identities=52% Similarity=0.969 Sum_probs=202.4
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhh----ccchh-hHHHH
Q psy13136 401 KTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFAS----HLENA-DILEF 475 (695)
Q Consensus 401 ~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~----~~~~~-~~l~~ 475 (695)
+.....++.+.++|++|.++|++|+++|+..++++++|+|++.|++|+++++|+|+++.+...+. ...+. ..+|+
T Consensus 233 ~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrv 312 (477)
T KOG3713|consen 233 KIESEPHPILTYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRV 312 (477)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHH
Confidence 34456788999999999999999999999999999999999999999999999999998876653 22333 78999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhh
Q psy13136 476 FSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMT 555 (695)
Q Consensus 476 lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tlt 555 (695)
||++|++|++||.|+..+||.+..+++++.+++..+++++.+.+.+||.+.|++|+ +.++.+|.+++.++||+++|||
T Consensus 313 lR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek--~~~~~~FtSIPa~~WWaiVTMT 390 (477)
T KOG3713|consen 313 LRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK--DEPDTKFTSIPAGFWWAVVTMT 390 (477)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCccccchhheeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999 4555669999999999999999
Q ss_pred cccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHhhhcccCCCCCC
Q psy13136 556 TVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPR 622 (695)
Q Consensus 556 TvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
||||||++|.|..|++++...+++|++++++.|.+|++||++++.+.+++++..+++++....++..
T Consensus 391 TVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~~~~~~~~~ 457 (477)
T KOG3713|consen 391 TVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREALEPAESIA 457 (477)
T ss_pred eecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999888888877664433
No 2
>KOG4390|consensus
Probab=100.00 E-value=7.9e-46 Score=369.79 Aligned_cols=197 Identities=41% Similarity=0.802 Sum_probs=178.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHH
Q psy13136 405 NAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRL 484 (695)
Q Consensus 405 ~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~ 484 (695)
.+...++.+|.+|..||+.|+++|+++++.+.+|+|+...++|.++++|+++.++..... .....+-.||++|++|+
T Consensus 224 ry~~aFFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~---DVSGaFVTLRVFRVFRI 300 (632)
T KOG4390|consen 224 RYPVAFFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE---DVSGAFVTLRVFRVFRI 300 (632)
T ss_pred ccceeeEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc---cccceeEEEEeeeeeee
Confidence 356677889999999999999999999999999999999999999999999988765432 11234556789999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCc
Q psy13136 485 FKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAP 564 (695)
Q Consensus 485 lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p 564 (695)
||..|+.+++|.+..++......++.+++-+.+.++|||.++|+.|+ .....+|.+++.|||+.++||||.||||++|
T Consensus 301 FKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK--g~~at~FTsIPaaFWYTIVTmTTLGYGDMVp 378 (632)
T KOG4390|consen 301 FKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK--GSSATKFTSIPAAFWYTIVTMTTLGYGDMVP 378 (632)
T ss_pred eeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc--cccccccccCcHhHhhheeeeeeccccccch
Confidence 99999999999999999999999999999999999999999999998 4556789999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 565 KTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARA 606 (695)
Q Consensus 565 ~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~ 606 (695)
.|.+|++|..++.+.|++++++.+.+|++||++.+.+++...
T Consensus 379 ~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRAD 420 (632)
T KOG4390|consen 379 STIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420 (632)
T ss_pred HHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhh
Confidence 999999999999999999999999999999999987765433
No 3
>KOG1545|consensus
Probab=100.00 E-value=9.6e-43 Score=345.26 Aligned_cols=290 Identities=45% Similarity=0.790 Sum_probs=248.8
Q ss_pred HHHHHhhhhHHHhh--hcccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccc
Q psy13136 312 EEMARKFGFEEAYF--KGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVR 389 (695)
Q Consensus 312 ~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~ 389 (695)
++...++++++.+. +++..+.+.++|++|.+++.|.||..++.+.++.+++|++|++++|+||.|++.++-...-...
T Consensus 148 ~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~ 227 (507)
T KOG1545|consen 148 DEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFP 227 (507)
T ss_pred HHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhcccccccc
Confidence 45566677777653 3466789999999999999999999999999999999999999999999999886411100000
Q ss_pred -----cc-c-CCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHh
Q psy13136 390 -----TT-H-NTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQK 462 (695)
Q Consensus 390 -----~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~ 462 (695)
.. + ....-..+..++.....++++|..|.++|++|.++|+++++.|-.|+++..|++|+++++|+++.+....
T Consensus 228 ~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtel 307 (507)
T KOG1545|consen 228 AGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTEL 307 (507)
T ss_pred ccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 0 0011123345666788999999999999999999999999999999999999999999999999887643
Q ss_pred hhh--------ccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy13136 463 FAS--------HLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA 534 (695)
Q Consensus 463 ~~~--------~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~ 534 (695)
... ..-++.++|++|+.|++|+|||.|+.++++.+.+++..+++.+..+++++++.+++|+..+|++|. +
T Consensus 308 a~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa--d 385 (507)
T KOG1545|consen 308 AEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA--D 385 (507)
T ss_pred HHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec--C
Confidence 321 123467899999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 535 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 603 (695)
Q Consensus 535 ~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~ 603 (695)
++++.|.++++||||+++|||||||||++|.|..|+++..++.+.|++.+++.+.+|++||+..|..+.
T Consensus 386 e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEt 454 (507)
T KOG1545|consen 386 EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET 454 (507)
T ss_pred CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeeccc
Confidence 788999999999999999999999999999999999999999999999999999999999998886544
No 4
>KOG1545|consensus
Probab=100.00 E-value=1.7e-34 Score=286.78 Aligned_cols=80 Identities=63% Similarity=1.056 Sum_probs=75.2
Q ss_pred hhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHH
Q psy13136 140 PCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYS 219 (695)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~ 219 (695)
+|++.+||+|.+. ++++|+|||+|||||+|||||||||||+|.|+.||+++.+|++.|++.+|+|+++|++||...|+
T Consensus 374 LFsSavYFAEade--~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 374 LFSSAVYFAEADE--PESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred HHhceeeeeecCC--CccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceee
Confidence 4689999999854 78999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HH
Q psy13136 220 HT 221 (695)
Q Consensus 220 ~~ 221 (695)
+.
T Consensus 452 rE 453 (507)
T KOG1545|consen 452 RE 453 (507)
T ss_pred cc
Confidence 63
No 5
>KOG2302|consensus
Probab=99.96 E-value=2.2e-28 Score=266.74 Aligned_cols=342 Identities=18% Similarity=0.324 Sum_probs=261.4
Q ss_pred CcccccchhhhhhhhheecccCCCC------------Ccc----cchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHHHH
Q psy13136 158 DFNSIPLGLWWALVTMTTVGYGDMA------------PKT----YVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT 221 (695)
Q Consensus 158 ~~~~~~~~~~~~~~t~ttvgygd~~------------p~t----~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~~ 221 (695)
+|.+..+|+.--+|-.|--||-+++ |++ ++=-+|.+++.++.++++++++++++.||.++.+++
T Consensus 1316 NfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhq 1395 (1956)
T KOG2302|consen 1316 NFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQ 1395 (1956)
T ss_pred ccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788887666777777777643 333 234457778888999999999999999999999887
Q ss_pred HHhhhccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccCC
Q psy13136 222 QARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMG 301 (695)
Q Consensus 222 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (695)
++++...+++++--..+..++.
T Consensus 1396 e~EeArRreEKrLrrlekkrR~---------------------------------------------------------- 1417 (1956)
T KOG2302|consen 1396 EAEEARRREEKRLRRLEKKRRA---------------------------------------------------------- 1417 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------------------------------------------
Confidence 7765443333220000000000
Q ss_pred CCCCCCCcchHHHHHhhhhHHHhhhcccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy13136 302 PKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVP 381 (695)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~ 381 (695)
...+.+. .-+..+|+-+...+.. .+.+.++.++|++|++++.+++|.+.
T Consensus 1418 -----------------Aq~kpyy----seyt~~rrlIh~~ctS-------hyld~fit~ii~LnvVtms~ehyqqp--- 1466 (1956)
T KOG2302|consen 1418 -----------------AQRKPYY----SEYTMTRRLIHSKCTS-------HYLDQFITFIICLNVVTMSEEHYQQP--- 1466 (1956)
T ss_pred -----------------ccCCccc----ccccHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 0000000 1134566666666654 49999999999999999999998443
Q ss_pred cccccccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHH
Q psy13136 382 VIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQ 461 (695)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~ 461 (695)
..+..++.++||.|+++|++|.++|++++|.+ +|+++.||.+|+.+|+.+++.+.+.
T Consensus 1467 ----------------------~sldealkycny~ft~vfV~EaV~klvafG~r-rFfkdrwnqldlaivlls~mgitle 1523 (1956)
T KOG2302|consen 1467 ----------------------TSLDEALKYCNYRFTAVFVLEAVLKLVAFGER-RFFKDRWNQLDLAIVLLSVMGITLE 1523 (1956)
T ss_pred ----------------------ccHHHHhhhcceeeeehhHHHHHHHHHHHhHH-HHHhhhhhhhhHHHHHHHHhcccHh
Confidence 34789999999999999999999999999998 9999999999999999998887765
Q ss_pred hhh---hccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccC
Q psy13136 462 KFA---SHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYA----ERIQA 534 (695)
Q Consensus 462 ~~~---~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~----e~~~~ 534 (695)
.+. ..+.|..++|++|++|+.|++||++...+||.+++++.+.++++.++.++++++++|||.+..-. |-++.
T Consensus 1524 eie~naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~ 1603 (1956)
T KOG2302|consen 1524 EIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEE 1603 (1956)
T ss_pred heeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 542 33456789999999999999999999999999999999999999999999999999999983322 22333
Q ss_pred CC------CCCCCchhhHHHHHHhhhhcccccCCCccchh-------------h-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 535 NP------HNDFNSIPLGLWWALVTMTTVGYGDMAPKTYV-------------G-MFVGALCALAGVLTIALPVPVIVSN 594 (695)
Q Consensus 535 ~~------~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~-------------g-~~~~~~~~l~g~~~~~l~ia~i~~~ 594 (695)
|| +..|.||+.||...|...|+..|..|...|-- . .+|+.|+...-++++|+++|+++..
T Consensus 1604 npceglsrhatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkh 1683 (1956)
T KOG2302|consen 1604 NPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKH 1683 (1956)
T ss_pred CCccccccccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 33 57899999999999999999999888766521 1 2566666777799999999999999
Q ss_pred HHHHHHHHHHHHHcHHh
Q psy13136 595 FAMYYSHTQARAKLPKK 611 (695)
Q Consensus 595 f~~~~~~~~~~~~~~~~ 611 (695)
+.+..++.++.++...+
T Consensus 1684 leesnkea~edaeldae 1700 (1956)
T KOG2302|consen 1684 LEESNKEAQEDAELDAE 1700 (1956)
T ss_pred HHhhchhhhhhhhcchh
Confidence 99877666655554443
No 6
>KOG1419|consensus
Probab=99.96 E-value=1.6e-28 Score=257.01 Aligned_cols=258 Identities=22% Similarity=0.423 Sum_probs=213.1
Q ss_pred chhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhH
Q psy13136 330 SWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDA 409 (695)
Q Consensus 330 ~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (695)
.+++++|.++|.+++.|..-. +..+..+++++++.++++-++.|.+++. .....+
T Consensus 72 ~r~Rr~q~~vYN~LERPrGWk-af~YH~~VFllVl~CLILsV~STi~e~~------------------------~~a~~~ 126 (654)
T KOG1419|consen 72 ARYRRIQNKVYNFLERPRGWK-AFLYHFFVFLLVLSCLILSVLSTIEEYE------------------------KLASGI 126 (654)
T ss_pred HHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHhcccHHHH------------------------HHHHHH
Confidence 357889999999999995431 3455666666666677777777765543 346789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---------cccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHH
Q psy13136 410 FFYIECLCNAWFTFEILMRFISSPR---------KCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIR 480 (695)
Q Consensus 410 l~~~~~~~~~iF~~E~~lk~~~~~~---------~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllR 480 (695)
++++|+++.++|.+|+++|+|+++. |.+|.++++.++|+++++.++..+....- .+......++-||.+.
T Consensus 127 L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~q-G~vfatSalrslRFlQ 205 (654)
T KOG1419|consen 127 LYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQ-GNVFATSALRSLRFLQ 205 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCc-cceeehhhhhhhHHHH
Confidence 9999999999999999999999884 56899999999999999888655544322 2222346788999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--CCCCCCchhhHHHHHHhhhhccc
Q psy13136 481 IMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQAN--PHNDFNSIPLGLWWALVTMTTVG 558 (695)
Q Consensus 481 llR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~--~~~~f~~~~~aly~~~~tltTvG 558 (695)
+||++|+-|....|+.|...+....+.|+....+-++++++.+.++|++|.+..+ .+..|.+|.||+||..+|+||||
T Consensus 206 ILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIG 285 (654)
T KOG1419|consen 206 ILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIG 285 (654)
T ss_pred HHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeec
Confidence 9999999999999999999999999999988888888888888899999985332 46789999999999999999999
Q ss_pred ccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHhhh
Q psy13136 559 YGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRR 613 (695)
Q Consensus 559 yGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~~~~~~~~ 613 (695)
|||.+|+|+.||+++..+.++|+-+|++.-+++.+.|+-..++++.+++..+++.
T Consensus 286 YGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~ 340 (654)
T KOG1419|consen 286 YGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRN 340 (654)
T ss_pred cCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988877776665555544
No 7
>KOG2302|consensus
Probab=99.94 E-value=5.5e-26 Score=248.14 Aligned_cols=265 Identities=17% Similarity=0.280 Sum_probs=206.2
Q ss_pred ccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCch
Q psy13136 328 RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAH 407 (695)
Q Consensus 328 ~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (695)
...+.+|+|..|.++..+ +.|+.+++++|++|++++++++...... ....
T Consensus 1106 lF~pQ~rFR~lc~~ii~h-------k~Fd~vVl~~IfLNcVtialerp~i~~~-----------------------s~Er 1155 (1956)
T KOG2302|consen 1106 LFSPQNRFRVLCQNIIQH-------KAFDTVVLFFIFLNCVTIALERPAIVEG-----------------------STER 1155 (1956)
T ss_pred hcCcccHHHHHHHHHHHH-------hhhhheehhhhhhhhHHHHhcccccccC-----------------------cceE
Confidence 344566677777776655 5999999999999999999999643221 2233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc---cccccccccchhhhhhHhHHHHHHHHHhhhh-ccchhhHHHHHHHHHHHH
Q psy13136 408 DAFFYIECLCNAWFTFEILMRFISSPR---KCEFIKASVNVIDYIATLSFYIDLLLQKFAS-HLENADILEFFSIIRIMR 483 (695)
Q Consensus 408 ~~l~~~~~~~~~iF~~E~~lk~~~~~~---~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~-~~~~~~~l~~lRllRllR 483 (695)
.++..-||+|++||++||.+|+++.|. ...|+++.||.+|.+.+..+++++++...+. +..-+.++|+||++|.+|
T Consensus 1156 iFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlR 1235 (1956)
T KOG2302|consen 1156 IFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLR 1235 (1956)
T ss_pred EEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 455566799999999999999999883 3489999999999999999999998876543 344567888888888999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhccC-----------C------CCC
Q psy13136 484 LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASL--------VYYAERIQA-----------N------PHN 538 (695)
Q Consensus 484 ~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l--------~~~~e~~~~-----------~------~~~ 538 (695)
++|.+.+.++++.++.++.++++.+.+++++.+.+++||+++ +|.+++.+. . ...
T Consensus 1236 pLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhky 1315 (1956)
T KOG2302|consen 1236 PLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKY 1315 (1956)
T ss_pred HHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhc
Confidence 999999999999999999999999999999999999999998 344443111 0 146
Q ss_pred CCCchhhHHHHHHhhhhcccccCCCccc---------------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 539 DFNSIPLGLWWALVTMTTVGYGDMAPKT---------------YV-GMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT 602 (695)
Q Consensus 539 ~f~~~~~aly~~~~tltTvGyGDi~p~t---------------~~-g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~ 602 (695)
||+|.++|++..|+..|-.||-+|+-.. ++ -.+|.+++.|+.++++|+|++++++||-...+++
T Consensus 1316 NfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhq 1395 (1956)
T KOG2302|consen 1316 NFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQ 1395 (1956)
T ss_pred ccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998765332 22 3456778888999999999999999999877766
Q ss_pred HHHHHcHHhhhcccCCCCCC
Q psy13136 603 QARAKLPKKRRRVLPVEQPR 622 (695)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~ 622 (695)
++++..++++++..++++.+
T Consensus 1396 e~EeArRreEKrLrrlekkr 1415 (1956)
T KOG2302|consen 1396 EAEEARRREEKRLRRLEKKR 1415 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444444443444333
No 8
>KOG2301|consensus
Probab=99.92 E-value=2.7e-25 Score=266.50 Aligned_cols=335 Identities=17% Similarity=0.273 Sum_probs=257.2
Q ss_pred CCCcccccchhhhhhhhheecccCCCCCccc----------------chhHHHHHHHHHHHHHhhcchhHhhhhhHHhHH
Q psy13136 156 HNDFNSIPLGLWWALVTMTTVGYGDMAPKTY----------------VGMFVGALCALAGVLTIALPVPVIVSNFAMYYS 219 (695)
Q Consensus 156 ~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~----------------~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~ 219 (695)
+-+|++++.|+-=-..+.|-.||=|+.+... ..-++.++.++++++.+++++++|..+|++...
T Consensus 1030 ~~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~ 1109 (1592)
T KOG2301|consen 1030 KFNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKG 1109 (1592)
T ss_pred ccccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhch
Confidence 3568888888877777777778766544322 223466677788899999999999999987543
Q ss_pred HHHHh-hhccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcc
Q psy13136 220 HTQAR-AKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKE 298 (695)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 298 (695)
+.... ....++++-.........+
T Consensus 1110 ~~~~~~~~~eq~~~~~~~~~l~sk~------------------------------------------------------- 1134 (1592)
T KOG2301|consen 1110 KAGGTFMTEEQKKRLNAAKKLGSKP------------------------------------------------------- 1134 (1592)
T ss_pred hhhhhhhhHHHHHHHHHHHHhcCCC-------------------------------------------------------
Confidence 32220 0000000000000000000
Q ss_pred cCCCCCCCCCcchHHHHHhhhhHHHhhhcccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy13136 299 MMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDM 378 (695)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~ 378 (695)
..+...++.+++|..+|.++.++ .|+++++++|++|++.++++++++.
T Consensus 1135 -------------------------~~r~ipr~~~~~q~~~~~~v~~~-------~F~~~i~~li~ln~i~l~~~~~~qs 1182 (1592)
T KOG2301|consen 1135 -------------------------PQRPIPRPRNKLQGLVFDLVTSQ-------AFDYLIMLLIFLNTIIMMVETYDQS 1182 (1592)
T ss_pred -------------------------CCCCCCCCcchhhhHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhhccch
Confidence 01112334577899999999886 7999999999999999999998553
Q ss_pred CcccccccccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHH
Q psy13136 379 RVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDL 458 (695)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~ 458 (695)
. .+..++.+++.+|+.+|++|+++|+++.+.+ .|++++||+||+++++.+++.+
T Consensus 1183 ~-------------------------~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~-~yf~~~WN~FDfvvvIlSIv~~ 1236 (1592)
T KOG2301|consen 1183 D-------------------------TYTAILTILNAVFIVLFTIECILKVIALRFR-GYFTSAWNVFDFVVTILSIVGI 1236 (1592)
T ss_pred H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HhccccchheEeeeeeHhHHHH
Confidence 3 3567999999999999999999999999988 9999999999999999999999
Q ss_pred HHHhhhh-ccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cc
Q psy13136 459 LLQKFAS-HLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAER----IQ 533 (695)
Q Consensus 459 ~~~~~~~-~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~----~~ 533 (695)
++..... ...+....+++|++|++|.+|+++...+++.|..++..|++.+.++++++++++++||++.....+ ..
T Consensus 1237 ~ls~~~~~~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~ 1316 (1592)
T KOG2301|consen 1237 VLSEAVEKYESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLGG 1316 (1592)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccc
Confidence 8876653 234567899999999999999999999999999999999999999999999999999998333221 25
Q ss_pred CCCCCCCCchhhHHHHHHhhhhcccccCC-----------Cc--cc---hhh------HHHHHHHHHHHHHHHHHHHHHH
Q psy13136 534 ANPHNDFNSIPLGLWWALVTMTTVGYGDM-----------AP--KT---YVG------MFVGALCALAGVLTIALPVPVI 591 (695)
Q Consensus 534 ~~~~~~f~~~~~aly~~~~tltTvGyGDi-----------~p--~t---~~g------~~~~~~~~l~g~~~~~l~ia~i 591 (695)
.+++.||.++.+|+--.|...|+.||.|+ .| .+ ..| -+|+++++|+.++++|++||+|
T Consensus 1317 i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVI 1396 (1592)
T KOG2301|consen 1317 INDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVI 1396 (1592)
T ss_pred cCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998764 11 11 122 4688899999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy13136 592 VSNFAMYYSHTQ 603 (695)
Q Consensus 592 ~~~f~~~~~~~~ 603 (695)
++||+..+++..
T Consensus 1397 meNFs~~t~~~s 1408 (1592)
T KOG2301|consen 1397 LENFSYATEDSS 1408 (1592)
T ss_pred Hhhhhhhccccc
Confidence 999997665443
No 9
>KOG3713|consensus
Probab=99.92 E-value=8.6e-26 Score=237.21 Aligned_cols=224 Identities=42% Similarity=0.733 Sum_probs=176.5
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhhhhhHHHHHHhhccCCCCCCCChHHHHHhhcchhhhccCC
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGR 80 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~~e~~e~l~~~~~~~~d~~~~~~e~~~~~~~~~~~~~~~~ 80 (695)
|||||+|.|+|+++|+|||+|||||+.++|+ |||++|.+||++. .+..+..+. .+++..++.+.+.+ +
T Consensus 101 tGkLH~p~~vC~~~F~eEL~yWgI~~~~le~-CC~~~~~~~~ee~--~e~~~~~~~-----~~~~~~~~~~~~~~--~-- 168 (477)
T KOG3713|consen 101 TGKLHVPADVCPLSFEEELDYWGIDEAHLES-CCWMRYRQRREEL--LEELDRPDP-----DEEELREREGPEFD--G-- 168 (477)
T ss_pred cCeeccccccchHHHHHHHHHhCCChhhhhH-HhHHHHhhcHHHH--hhhhcccCc-----hhhhHHhhcccccc--C--
Confidence 8999999999999999999999999999997 9999999999532 222222221 11112122222221 2
Q ss_pred cchhhhhhhHHHhhhcCCCCCccceeeeeeee----------------------------------------------ee
Q psy13136 81 LSWWQKTKPQLWSLFDEPYSSNSAKDNEALQV----------------------------------------------DE 114 (695)
Q Consensus 81 ~~~~~~~r~~iW~l~e~P~SS~~aki~a~~~~----------------------------------------------~~ 114 (695)
+.++++|+++|++||||+||.+||+||++|+ +.
T Consensus 169 -~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~ 247 (477)
T KOG3713|consen 169 -GRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVET 247 (477)
T ss_pred -CChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHH
Confidence 3478899999999999999999999998753 11
Q ss_pred cccccccc-------------------------ccccceecc---------------------------c-------cCc
Q psy13136 115 AFVGLENL-------------------------DANVPCICK---------------------------R-------TDP 135 (695)
Q Consensus 115 ~~~~~~~~-------------------------~~~~~~~~~---------------------------~-------~d~ 135 (695)
.|+++|++ ++++|+|.- | ..+
T Consensus 248 vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRh 327 (477)
T KOG3713|consen 248 VCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARH 327 (477)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 25566653 244555511 0 011
Q ss_pred --------------------------ccchhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchh
Q psy13136 136 --------------------------SSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGM 189 (695)
Q Consensus 136 --------------------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~ 189 (695)
+.+++||+++||+||+. ++++|+|||+++|||+||||||||||++|+|++||
T Consensus 328 S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~--~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gk 405 (477)
T KOG3713|consen 328 STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE--PDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGK 405 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCccccchhheeeEEEeeecccCccccccchH
Confidence 12556899999999976 55779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHhhhhhHHhHHHHHHhhhccccccccccccC
Q psy13136 190 FVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQ 239 (695)
Q Consensus 190 ~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (695)
++++.|+++||+++|+||++|++||+++|+++|++++.+++++++.+.+.
T Consensus 406 lvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~~~~~~~ 455 (477)
T KOG3713|consen 406 LVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREALEPAES 455 (477)
T ss_pred HHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999888776633
No 10
>KOG2301|consensus
Probab=99.91 E-value=8.5e-25 Score=262.26 Aligned_cols=372 Identities=19% Similarity=0.171 Sum_probs=253.5
Q ss_pred CCcccccchhhhhhhhheecccCCCCCccc--chh----HHHHHHHHHHHHHhhcchhHhhhhhHHhHHHHHHhhhcccc
Q psy13136 157 NDFNSIPLGLWWALVTMTTVGYGDMAPKTY--VGM----FVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKK 230 (695)
Q Consensus 157 ~~~~~~~~~~~~~~~t~ttvgygd~~p~t~--~g~----~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~~~~~~~~~~~ 230 (695)
+.|+++.-|+.-..-.||.=||.|++-.|. .|+ ++..+..++++.++++++|++...|++.+.+.+.+.+..+.
T Consensus 273 t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~~~~~~~~~~ 352 (1592)
T KOG2301|consen 273 TSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAFEEEWQFKEP 352 (1592)
T ss_pred ccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHHHhhhhhhch
Confidence 667778888888888899999999754432 343 36677778999999999999999999987665554333222
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccCCCCCCCCCcc
Q psy13136 231 RRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPS 310 (695)
Q Consensus 231 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (695)
+.++.-.+........-.....-.... +..++.- .......+.....+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~~~~--------- 403 (1592)
T KOG2301|consen 353 RFQEAFEELLEKYEDGIFLAEADGSVE-------------------SGPKSKL-FSVDSLEDVNSRVELLS--------- 403 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc-------------------cccchhh-hhhhhhhhhhhhhhhhh---------
Confidence 222111111000000000000000000 0000000 00000000000000000
Q ss_pred hHHHHHhhhhHHHhh-----hcccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc
Q psy13136 311 DEEMARKFGFEEAYF-----KGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHN 385 (695)
Q Consensus 311 ~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~ 385 (695)
....+......... .....+|.++|+.+..++.+| .+.+++.+++++|++.+++++|++.+
T Consensus 404 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~-------~~~~~i~i~i~lnt~~~a~eh~~~~~------ 469 (1592)
T KOG2301|consen 404 -AVSYKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDP-------FVILFITICIALNTLFMAMEHYEMTK------ 469 (1592)
T ss_pred -hhcccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcc-------eehhhhHHHHhhcccEEEEEEeCCcH------
Confidence 00000011111111 112456889999999999998 89999999999999999999986543
Q ss_pred cccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhh
Q psy13136 386 ITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFAS 465 (695)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~ 465 (695)
.....+.+.|.+|+.+|+.||.+|+++.+.+ .|++++||+||+++++..++...
T Consensus 470 -------------------~~~~~l~~~~~vF~~lF~~Em~~ki~al~~~-~yF~~~~n~fD~~iv~l~~~~~~------ 523 (1592)
T KOG2301|consen 470 -------------------ARNYLLYLGNVVFTGLFTVEMILKIYALGPR-NYFRRGWNIFDLIIVLLSLLELL------ 523 (1592)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHhhhcchheEEEEehhhHHhc------
Confidence 3588999999999999999999999999998 99999999999999993333332
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC----CCCCC
Q psy13136 466 HLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANP----HNDFN 541 (695)
Q Consensus 466 ~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~----~~~f~ 541 (695)
..+...+++||.+|++|++|+.++++.++.+...+.++.+.+++++++++++++|||++.....+...++ +.+|+
T Consensus 524 -~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~ 602 (1592)
T KOG2301|consen 524 -LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFT 602 (1592)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchh
Confidence 3456789999999999999999999999999999999999999999999999999999855544433333 24889
Q ss_pred chhhHHHHHHhhhhcccccCCCc------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVGYGDMAP------KTYVGMFVGALCALAG-VLTIALPVPVIVSNFAMYY 599 (695)
Q Consensus 542 ~~~~aly~~~~tltTvGyGDi~p------~t~~g~~~~~~~~l~g-~~~~~l~ia~i~~~f~~~~ 599 (695)
+|+.||.+.|+ +|+.+|-|++- .++.-.++.+.++++| .+++|+|+|+++++++...
T Consensus 603 ~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 603 DFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE 666 (1592)
T ss_pred hCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 99999999999 99988877521 2233345555555555 9999999999999999755
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.89 E-value=1.2e-22 Score=241.45 Aligned_cols=232 Identities=14% Similarity=0.167 Sum_probs=159.3
Q ss_pred hhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHH
Q psy13136 340 WSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNA 419 (695)
Q Consensus 340 ~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 419 (695)
++.+.+|.++.+ ++|+++++++++.+.+...++.... +......+.++|+++++
T Consensus 50 ~~~ii~P~~~~~-~~Wd~~~~~~~~y~~~~~p~~~~F~-------------------------~~~~~~~~~~~d~i~~~ 103 (823)
T PLN03192 50 DGWIISPMDSRY-RWWETLMVVLVAYSAWVYPFEVAFL-------------------------NASPKRGLEIADNVVDL 103 (823)
T ss_pred CCeEECCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHee-------------------------CCCCCCCeeeHHHHHHH
Confidence 345778876654 6889999999999988877764311 01123356789999999
Q ss_pred HHHHHHHHHHhcccc--------------cccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q psy13136 420 WFTFEILMRFISSPR--------------KCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLF 485 (695)
Q Consensus 420 iF~~E~~lk~~~~~~--------------~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~l 485 (695)
+|++|++++|+.+.. .++|+++ |+++|+++++|+.+........ ......++++|++|++|+.
T Consensus 104 ~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~--~~~~~~~~~l~llrl~Rl~ 180 (823)
T PLN03192 104 FFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGT--VKLNLSYSLLGLLRFWRLR 180 (823)
T ss_pred HHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCC--ccchHHHHHHHHHHHHHHH
Confidence 999999999988631 3478866 8999999999996543322110 0111223344444444444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-C-------CC------CchhhHHHHHH
Q psy13136 486 KLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPH-N-------DF------NSIPLGLWWAL 551 (695)
Q Consensus 486 kl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~-~-------~f------~~~~~aly~~~ 551 (695)
|+.+....++..... ......+..++++++++++++||++|++......++ + ++ ..|..|+||++
T Consensus 181 ri~~~~~~le~~~~~-~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai 259 (823)
T PLN03192 181 RVKQLFTRLEKDIRF-SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSI 259 (823)
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHH
Confidence 444433333322111 111234566777777889999999998764222111 1 11 22777999999
Q ss_pred hhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 552 VTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSH 601 (695)
Q Consensus 552 ~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~ 601 (695)
+|||||||||++|.|..+++|++++|++|++++++.+|.+.+.+.+...+
T Consensus 260 ~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~ 309 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 309 (823)
T ss_pred HHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887765433
No 12
>KOG0498|consensus
Probab=99.82 E-value=1.7e-19 Score=202.56 Aligned_cols=262 Identities=16% Similarity=0.204 Sum_probs=170.7
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHhhcC-CCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHHH
Q psy13136 343 FDEPYSSNSAKIIGVVSVFFICISILSFCLKTH-PDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWF 421 (695)
Q Consensus 343 ~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF 421 (695)
+.+|+|.. .+.++.+++++.+.+.++-.++-+ +.... ...+ .+......+.+++.+.+++|
T Consensus 69 Ii~P~s~~-~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~----------~~~~-------~d~~~~~~l~v~d~ivD~ff 130 (727)
T KOG0498|consen 69 ILDPYSPF-YRVWNKFFLLLVIYAAFVDPLFFYFLLIDD----------ERKC-------IDGKLAAPLTVLDTIVDIFF 130 (727)
T ss_pred eECCCChH-HHHHHHHHHHHHHHHHHhccceeeEEeccc----------cccc-------ccccccCceeeHHHHHHHHH
Confidence 55666654 445666666666666554433322 11100 0000 12336778899999999999
Q ss_pred HHHHHHHHhcccc--------------cccccccccchhhhhhHhHHHHHHHHHhhh---hccchhhHHHHHHHHHHHHH
Q psy13136 422 TFEILMRFISSPR--------------KCEFIKASVNVIDYIATLSFYIDLLLQKFA---SHLENADILEFFSIIRIMRL 484 (695)
Q Consensus 422 ~~E~~lk~~~~~~--------------~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~---~~~~~~~~l~~lRllRllR~ 484 (695)
++|++++|.++.- .++|+++ |+++|+++++|+...+++.... ..........++.+.|++|+
T Consensus 131 lvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl 209 (727)
T KOG0498|consen 131 LVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRL 209 (727)
T ss_pred HHHHHHhheEEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999987641 2589994 9999999999986555432210 00111123344444444444
Q ss_pred HHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCC--------------CC----CC--
Q psy13136 485 FKLTRHSSGLKILMQTFRAS-AKELTLLVFFLVLGIVIFASLVYYAERIQA--NPH--------------ND----FN-- 541 (695)
Q Consensus 485 lkl~r~~~~l~~l~~~l~~s-~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~--~~~--------------~~----f~-- 541 (695)
.|+++....+.......... +.....++++.++..|+.||++|++..... .+. .+ |.
T Consensus 210 ~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~ 289 (727)
T KOG0498|consen 210 RRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIY 289 (727)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccch
Confidence 44444444444333333322 222557788888889999999998754222 111 11 22
Q ss_pred ----chhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHhhhcccC
Q psy13136 542 ----SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLP 617 (695)
Q Consensus 542 ----~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
.|..||||+++||||+||||.+|.++.+++|++++|++|.++++++||.+.+.++.......+-....+..++.+.
T Consensus 290 s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~ 369 (727)
T KOG0498|consen 290 SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMS 369 (727)
T ss_pred hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2777999999999999999999999999999999999999999999999999999877655555555555555555
Q ss_pred CCCCCC
Q psy13136 618 VEQPRG 623 (695)
Q Consensus 618 ~~~~~~ 623 (695)
.++++.
T Consensus 370 ~~~LP~ 375 (727)
T KOG0498|consen 370 RRQLPP 375 (727)
T ss_pred hccCCH
Confidence 555544
No 13
>KOG4390|consensus
Probab=99.81 E-value=1.3e-21 Score=196.59 Aligned_cols=204 Identities=34% Similarity=0.571 Sum_probs=159.1
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhhhhhH-HHHHHhhccCCCCCCCChHHHHHhhcchhhhccC
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQ-ETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKG 79 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~~e~~-e~l~~~~~~~~d~~~~~~e~~~~~~~~~~~~~~~ 79 (695)
|||||||+..|..+|.|||.|+||.++.|+. ||++.|.++|.+. |.|+..++.+....+.. ..
T Consensus 100 TGkLHyPR~ECi~AyDeELaF~Gl~PeligD-CCyEeYkDrkrENaERL~dd~~~e~ag~~~~---------------p~ 163 (632)
T KOG4390|consen 100 TGKLHYPRHECISAYDEELAFYGLVPELIGD-CCYEEYKDRKRENAERLQDDEDAENAGGPAL---------------PA 163 (632)
T ss_pred cCcccCchHHHHHHhhhhhhHhcccHHHHhh-hhhHHHhhhhhhhHHHhhchhhhhhcCCCCC---------------cc
Confidence 7999999999999999999999999999997 9999999986644 55553332221111100 11
Q ss_pred CcchhhhhhhHHHhhhcCCCCCccceeeeeee----------------------------------------eeeccccc
Q psy13136 80 RLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQ----------------------------------------VDEAFVGL 119 (695)
Q Consensus 80 ~~~~~~~~r~~iW~l~e~P~SS~~aki~a~~~----------------------------------------~~~~~~~~ 119 (695)
+ -.+|.++|+.|||||.|.+|.+|+|+. +|++|+.+
T Consensus 164 ~----ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmI 239 (632)
T KOG4390|consen 164 G----LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMI 239 (632)
T ss_pred c----chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEE
Confidence 1 346889999999999999999999862 13346655
Q ss_pred ccc-------------------------ccccceeccc--c---Cc----------------------------------
Q psy13136 120 ENL-------------------------DANVPCICKR--T---DP---------------------------------- 135 (695)
Q Consensus 120 ~~~-------------------------~~~~~~~~~~--~---d~---------------------------------- 135 (695)
|+. ++++|+|.-. + |+
T Consensus 240 FT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKS 319 (632)
T KOG4390|consen 240 FTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKS 319 (632)
T ss_pred eeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHH
Confidence 552 2345555210 0 10
Q ss_pred -------------ccchhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHH
Q psy13136 136 -------------SSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202 (695)
Q Consensus 136 -------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~ 202 (695)
+++++|++++||+|++. ..+.|+|||+|||+++|||||.|||||+|.|.+||+++.+|.+.|+++
T Consensus 320 CASELGFLlFSLtMAIIIFATvMfYAEKg~--~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLV 397 (632)
T KOG4390|consen 320 CASELGFLLFSLTMAIIIFATVMFYAEKGS--SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLV 397 (632)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhccc--cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEE
Confidence 12556789999999966 458899999999999999999999999999999999999999999999
Q ss_pred hhcchhHhhhhhHHhHHHHHHhhh
Q psy13136 203 IALPVPVIVSNFAMYYSHTQARAK 226 (695)
Q Consensus 203 ~~~~i~~i~~~f~~~~~~~~~~~~ 226 (695)
+++|+++|++||++.|.+.+...|
T Consensus 398 IALPVPvIVSNFSRIYHQNQRADK 421 (632)
T KOG4390|consen 398 IALPVPVIVSNFSRIYHQNQRADK 421 (632)
T ss_pred EeccccEEEechhHHHhhhhhhhH
Confidence 999999999999999977665433
No 14
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.81 E-value=2.7e-19 Score=176.01 Aligned_cols=179 Identities=23% Similarity=0.480 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-cccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhh
Q psy13136 412 YIECLCNAWFTFEILMRFISSPR-KCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRH 490 (695)
Q Consensus 412 ~~~~~~~~iF~~E~~lk~~~~~~-~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~ 490 (695)
++|.+++++|++|+++|+++.+. +.+|+++.||++|+++++|+++............ ...++++|++|++|++|+.+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~R~l~~~~~ 79 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASA-QSLLRIFRLLRLLRLLRLLRR 79 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HH-CHCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccc-cceEEEEEeeccccccccccc
Confidence 57999999999999999999997 3599999999999999999977766543321100 246788899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--------------CCCCCCCchhhHHHHHHhhhhc
Q psy13136 491 SSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA--------------NPHNDFNSIPLGLWWALVTMTT 556 (695)
Q Consensus 491 ~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~--------------~~~~~f~~~~~aly~~~~tltT 556 (695)
.+.++.+...+....+.+..++++++++++.+|++.+...+... .+.++|++|..|+||+++++||
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~ 159 (200)
T PF00520_consen 80 FRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTG 159 (200)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999998766654322 2346788999999999999999
Q ss_pred ccccCCCcc-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q psy13136 557 VGYGDMAPK-----TYVGMFVG-ALCALAGVLTIALPVPVI 591 (695)
Q Consensus 557 vGyGDi~p~-----t~~g~~~~-~~~~l~g~~~~~l~ia~i 591 (695)
+||||+.|. +..+.++. ++.++++++++|+++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 160 EGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999998 77888888 777778899999999986
No 15
>KOG0501|consensus
Probab=99.72 E-value=4.4e-17 Score=171.61 Aligned_cols=240 Identities=17% Similarity=0.283 Sum_probs=163.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy13136 351 SAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFI 430 (695)
Q Consensus 351 ~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~ 430 (695)
.+.+++++|+++.+...++.... +.+.+ ...-...+.++|.++++||++|++++|.
T Consensus 216 FKt~WDWvIL~LTFYTAimVPyN------------vaFKn------------k~~~~vs~lvvDSiVDVIF~vDIvLNFH 271 (971)
T KOG0501|consen 216 FKTIWDWVILILTFYTAIMVPYN------------VAFKN------------KQRNNVSWLVVDSIVDVIFFVDIVLNFH 271 (971)
T ss_pred hhhHHHHHHHHHHHHHHheeeee------------eeecc------------cccCceeEEEecchhhhhhhhhhhhhcc
Confidence 34578888888777665533221 11111 1112344568899999999999999997
Q ss_pred ccc-------------ccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy13136 431 SSP-------------RKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKIL 497 (695)
Q Consensus 431 ~~~-------------~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l 497 (695)
+.- -|.+|+++ |+++|+++.+|+.+.-.+.....+.+ .+++.|.+.|+||+=|+.|..
T Consensus 272 TTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~--SLFSaLKVVRLLRLGRVaRKL------ 342 (971)
T KOG0501|consen 272 TTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIG--SLFSALKVVRLLRLGRVARKL------ 342 (971)
T ss_pred eeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHH--HHHHHHHHHHHHHHHHHHHHH------
Confidence 531 15689999 99999999999987766654433221 233333333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--------CC-------------CCCC---------------C
Q psy13136 498 MQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA--------NP-------------HNDF---------------N 541 (695)
Q Consensus 498 ~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~--------~~-------------~~~f---------------~ 541 (695)
-+-+.-....+..++.+..++.++.||+||.+.+... .+ ..+| .
T Consensus 343 D~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S 422 (971)
T KOG0501|consen 343 DHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTS 422 (971)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccc
Confidence 2222233344555566666777889999988765211 00 0111 1
Q ss_pred chhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHhhhcccCCCCC
Q psy13136 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQP 621 (695)
Q Consensus 542 ~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
-|..|+||...+|||||||+|.|.|..+++|.+.+|++|.++.+.+.|.+...|++.+....+..++....++.+++.+.
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~ev 502 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEV 502 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 28889999999999999999999999999999999999999999999999999998887777777777777777666655
Q ss_pred CC
Q psy13136 622 RG 623 (695)
Q Consensus 622 ~~ 623 (695)
++
T Consensus 503 PK 504 (971)
T KOG0501|consen 503 PK 504 (971)
T ss_pred cH
Confidence 44
No 16
>KOG1420|consensus
Probab=99.71 E-value=5.1e-18 Score=178.04 Aligned_cols=183 Identities=25% Similarity=0.335 Sum_probs=148.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHH
Q psy13136 402 TQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRI 481 (695)
Q Consensus 402 ~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRl 481 (695)
++...+.+-..+|..|+++|++.+.+||+++.++..|+...+.++|++.+-|+++.+.+.. ++..+|++|.+|+
T Consensus 156 cq~w~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~r------~wlglrflralrl 229 (1103)
T KOG1420|consen 156 CQNWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNR------SWLGLRFLRALRL 229 (1103)
T ss_pred hhhhhhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEecc------chHHHHHHHHHHh
Confidence 4445677788999999999999999999999999999999999999999999988776552 3445666666666
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc-----hhhHHHHHHhhhhc
Q psy13136 482 MRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNS-----IPLGLWWALVTMTT 556 (695)
Q Consensus 482 lR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~-----~~~aly~~~~tltT 556 (695)
+.+-.++++...++. .+-.++..++-+++-.|+..|.++++.|+. .+|-.+|+| |+++.|+.++||+|
T Consensus 230 mtvpdilqylnilkt------sssirl~qlvsifisvwltaag~ihllens-gdp~~~f~n~hrltyw~cvyfl~vtmst 302 (1103)
T KOG1420|consen 230 MTVPDILQYLNILKT------SSSIRLVQLVSIFISVWLTAAGFIHLLENS-GDPWENFQNNHRLTYWECVYFLMVTMST 302 (1103)
T ss_pred ccHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHhhcceeehhhcC-CChhHhccCcccchhhheeeeeEEEeee
Confidence 666555555444433 444566777777788888889999999873 444455554 99999999999999
Q ss_pred ccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 557 VGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 557 vGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
|||||++-.|..||.|.++++++|..+|+-.+.-|++.+.+
T Consensus 303 vgygdvyc~t~lgrlfmvffil~glamfasyvpeiielign 343 (1103)
T KOG1420|consen 303 VGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGN 343 (1103)
T ss_pred ccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcc
Confidence 99999999999999999999999999999999888877764
No 17
>KOG0500|consensus
Probab=99.56 E-value=1.9e-14 Score=150.75 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=135.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccc------------ccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhH
Q psy13136 405 NAHDAFFYIECLCNAWFTFEILMRFISSP------------RKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADI 472 (695)
Q Consensus 405 ~~~~~l~~~~~~~~~iF~~E~~lk~~~~~------------~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~ 472 (695)
.+...+..+|++++++|++|++++..... -+.+|+.+..+.+|+++++|.....+.... ...
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~------~~~ 99 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGS------ASL 99 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCc------chH
Confidence 35677889999999999999999987532 245899999999999999999777665422 233
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC----------CCCC--
Q psy13136 473 LEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANP----------HNDF-- 540 (695)
Q Consensus 473 l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~----------~~~f-- 540 (695)
.|+.|++|+.|++..+.+. -.++-.....++.+++..+++++|+.||++|.+.....-. ++.|
T Consensus 100 ~r~nRllk~yRl~~F~~rT-----etrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~ 174 (536)
T KOG0500|consen 100 ERLNRLLKIYRLFEFFDRT-----ETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFAT 174 (536)
T ss_pred HHHHHHHHHHHHHHHHHHh-----ccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccc
Confidence 4444555444444443322 2233445566788899999999999999988875422110 1111
Q ss_pred -------CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 -------NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599 (695)
Q Consensus 541 -------~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~ 599 (695)
..|..|+||+..|+||+| .-..|.|.....|.++=.++|+++||.++|.+.+.+++..
T Consensus 175 c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 175 CDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 227789999999999999 6678999999999999999999999999888877666543
No 18
>KOG1419|consensus
Probab=99.53 E-value=5e-15 Score=156.37 Aligned_cols=83 Identities=34% Similarity=0.661 Sum_probs=73.6
Q ss_pred hhhhHhhhhhhcCCC--CCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 140 PCVSLVYYAERIQAN--PHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 140 ~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
..|.++|++|++..+ .+..|.++.+|+||.++|||||||||++|+|+.||++++.|.++||-.+++|-+++.+.|+-.
T Consensus 246 fsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 246 FSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred HHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 347999999997542 346799999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHH
Q psy13136 218 YSHTQ 222 (695)
Q Consensus 218 ~~~~~ 222 (695)
.++++
T Consensus 326 VQeq~ 330 (654)
T KOG1419|consen 326 VQEQH 330 (654)
T ss_pred hHHHH
Confidence 55433
No 19
>KOG4404|consensus
Probab=99.50 E-value=5.1e-13 Score=133.37 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccch--------hhHHHHHHHHHHHHHHHHHH
Q psy13136 516 VLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTY--------VGMFVGALCALAGVLTIALP 587 (695)
Q Consensus 516 ~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~--------~g~~~~~~~~l~g~~~~~l~ 587 (695)
++.+...|.++..+|+ ++|+||+||+|+|+||||+||.++.-. .-+++..+++++|+.+++-+
T Consensus 169 ~~~i~~gaa~fs~~E~---------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~ 239 (350)
T KOG4404|consen 169 ILLICCGAAMFSSVEG---------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYAL 239 (350)
T ss_pred HHHHHhhHHHhhcccC---------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHH
Confidence 3444556667777887 899999999999999999999987543 23577888899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13136 588 VPVIVSNFAMYYSHTQ 603 (695)
Q Consensus 588 ia~i~~~f~~~~~~~~ 603 (695)
+++++-.|.....++.
T Consensus 240 ~NllvLrf~t~~~~~~ 255 (350)
T KOG4404|consen 240 LNLLVLRFMTMNAEDE 255 (350)
T ss_pred HHHHHHHHHHhhhHHH
Confidence 9998888876555443
No 20
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.37 E-value=2.7e-11 Score=139.93 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc----cccccccccccchhhhhhHhHHHHHHHHHh---------------------hh
Q psy13136 410 FFYIECLCNAWFTFEILMRFISS----PRKCEFIKASVNVIDYIATLSFYIDLLLQK---------------------FA 464 (695)
Q Consensus 410 l~~~~~~~~~iF~~E~~lk~~~~----~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~---------------------~~ 464 (695)
+.++=.+|.++|+++=+.++... +.++.||+++|||+|+++++.++..+.+-. ..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 33444444455555555555543 345699999999999988887765553210 00
Q ss_pred h------------------ccchh-----------hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13136 465 S------------------HLENA-----------DILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFL 515 (695)
Q Consensus 465 ~------------------~~~~~-----------~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll 515 (695)
. .+.++ .++.++-+++++|++|++++.+.++.+..++..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 012233457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccc---cCCCc----cchhhHH-HHHHHHHHHHHHHHHH
Q psy13136 516 VLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY---GDMAP----KTYVGMF-VGALCALAGVLTIALP 587 (695)
Q Consensus 516 ~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGy---GDi~p----~t~~g~~-~~~~~~l~g~~~~~l~ 587 (695)
+++++.||.+.+++.+. ....|.++..|++..|.++++... .|+.+ ...+|.+ |+.+++++.++++|+|
T Consensus 1338 ~IVF~AFAqLG~LLFGt---~ve~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMF 1414 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGN---ASVHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFL 1414 (1634)
T ss_pred HHHHHHHHHHHHHHhcc---CchhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887763 345899999999999998874321 11212 1245655 5556666778999999
Q ss_pred HHHHHHHHHHHHHH
Q psy13136 588 VPVIVSNFAMYYSH 601 (695)
Q Consensus 588 ia~i~~~f~~~~~~ 601 (695)
+|+|.+.|++...+
T Consensus 1415 IAII~DSFsEVK~d 1428 (1634)
T PLN03223 1415 LAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999976544
No 21
>KOG0499|consensus
Probab=99.33 E-value=8.8e-11 Score=125.19 Aligned_cols=178 Identities=17% Similarity=0.242 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----Hhccc--------ccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHH
Q psy13136 407 HDAFFYIECLCNAWFTFEILMR-----FISSP--------RKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADIL 473 (695)
Q Consensus 407 ~~~l~~~~~~~~~iF~~E~~lk-----~~~~~--------~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l 473 (695)
...|.++||+|++|+++||++= +.--| -+++|+++.-+.+|+++++|..+-.+....
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~---------- 329 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF---------- 329 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc----------
Confidence 4456799999999999999752 11111 256899999999999999998655543211
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC------CCCCchhhH
Q psy13136 474 EFFSIIRIMRLFKLTRHSSGLKILMQTFRA-SAKELTLLVFFLVLGIVIFASLVYYAERIQANPH------NDFNSIPLG 546 (695)
Q Consensus 474 ~~lRllRllR~lkl~r~~~~l~~l~~~l~~-s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~------~~f~~~~~a 546 (695)
.-++|+-|++|...++.-.+.+-+.+.+ -..++...+..++.++|+-||++|.....+.-.. ..-+.|..+
T Consensus 330 --~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRC 407 (815)
T KOG0499|consen 330 --NPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRC 407 (815)
T ss_pred --chhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeee
Confidence 1245667777777777666655555433 3346777778888899999999998876443221 122468999
Q ss_pred HHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 547 LWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 547 ly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
+||++-|+||+| |.--|+|..+.+|..+--+.|+++|+++||-|-+.+..
T Consensus 408 yyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 408 YYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred hhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999999999999999999777764
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.29 E-value=2.3e-11 Score=101.06 Aligned_cols=76 Identities=30% Similarity=0.546 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 516 VLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595 (695)
Q Consensus 516 ~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f 595 (695)
+++++.++.+++..++ + ..-.++.+|+||+++|+||+||||+.|.++.||+++++.++.|+.+++++++.+.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~----~-~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l 77 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISE----G-SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL 77 (79)
T ss_dssp HHHHHHHHHHHHHHTT----S-SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHH----h-cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666622 1 2347999999999999999999999999999999999999999999999999988776
Q ss_pred H
Q psy13136 596 A 596 (695)
Q Consensus 596 ~ 596 (695)
.
T Consensus 78 ~ 78 (79)
T PF07885_consen 78 T 78 (79)
T ss_dssp H
T ss_pred c
Confidence 5
No 23
>KOG1418|consensus
Probab=99.25 E-value=2.1e-12 Score=142.98 Aligned_cols=64 Identities=28% Similarity=0.405 Sum_probs=56.1
Q ss_pred CCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHHH
Q psy13136 157 NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSH 220 (695)
Q Consensus 157 ~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~ 220 (695)
....++++|+||+++++||+|||+++|.|..||+++++++++||.++.+.++-+..-+.+...+
T Consensus 111 ~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 111 TQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred CcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999999988887777666554444
No 24
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.23 E-value=7.4e-12 Score=104.07 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=59.1
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
++.++.+.|+.++ + ....++.+|+||+++|+|||||||++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus 6 ~l~~~~~~~~~~~----~-~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 6 VLAFGAIFFYISE----G-SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHTT----S-SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH----h-cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666632 1 34688999999999999999999999999999999999999999999999988877654
No 25
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.12 E-value=1.7e-09 Score=116.79 Aligned_cols=114 Identities=19% Similarity=0.333 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCCCCCCCCchhhHHHHHH
Q psy13136 473 LEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASL-VYYAERIQANPHNDFNSIPLGLWWAL 551 (695)
Q Consensus 473 l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l-~~~~e~~~~~~~~~f~~~~~aly~~~ 551 (695)
.+.++.+-+++++.++++++.......+.. ..+.++.+..+.+++.+ .++.++ .. ++.+.++.+|+||++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~-~f--~~~~~s~~dA~y~sv 177 (393)
T PRK10537 107 LKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGD-GF--SPPIESLSTAFYFSI 177 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcc-cc--CcCCCCHHHHHHhhh
Confidence 455666667777777777655544321111 22333333334455555 344443 12 245679999999999
Q ss_pred hhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 552 VTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 595 (695)
Q Consensus 552 ~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f 595 (695)
+|+||+||||+.|.|..||++++++++.|+.++++.++.++.-+
T Consensus 178 vt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 178 VTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred eeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887776544
No 26
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.97 E-value=2.5e-10 Score=123.17 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=59.6
Q ss_pred hhhhH-hhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 140 PCVSL-VYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 140 ~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
+++.+ .|+.|.. -++.+.++.+|+||+++|+|||||||++|.|..||++++++++.|+.+++..++.+...+.
T Consensus 149 ~~~~~g~~~~~~~---f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i 222 (393)
T PRK10537 149 FYSTFGALYLGDG---FSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVI 222 (393)
T ss_pred HHHHHHHHHHccc---cCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 4556631 2356789999999999999999999999999999999999999999999888877665443
No 27
>KOG3599|consensus
Probab=98.94 E-value=4.7e-08 Score=113.14 Aligned_cols=194 Identities=14% Similarity=0.185 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccc----------------h-
Q psy13136 407 HDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLE----------------N- 469 (695)
Q Consensus 407 ~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~----------------~- 469 (695)
.-...++=+++.++|+++-++++.-.+.+ +|+++.||++|++++..+++.+++.....+.. +
T Consensus 465 ~~l~~vvf~l~~~yf~~~e~~~i~~~~~~-~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F 543 (798)
T KOG3599|consen 465 IMLCEVVFLLFVLYFAVAEGLKIWIHRLG-RYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDF 543 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Confidence 33445556667777888888888764433 89999999999999988877665543211000 0
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q psy13136 470 ----------ADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHND 539 (695)
Q Consensus 470 ----------~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~ 539 (695)
..++-++-++-.++++|+++..+.++.+..++..+++.+..+.+.++++++-||.+.+++.+ +...+
T Consensus 544 ~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG---~~v~~ 620 (798)
T KOG3599|consen 544 TEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFG---NQVSD 620 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccCC
Confidence 01222333456778999999999999999999999999999999999999999999999887 44567
Q ss_pred CCchhhHHHHHHhhhhc-ccccCCCccc-hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 540 FNSIPLGLWWALVTMTT-VGYGDMAPKT-YVGMFV-GALCALAGVLTIALPVPVIVSNFAMYYSHTQA 604 (695)
Q Consensus 540 f~~~~~aly~~~~tltT-vGyGDi~p~t-~~g~~~-~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~ 604 (695)
|.++.+++..++--+-+ .-+-++.+.+ ..|-++ .++++++.++++|+|+++|.+.+++..+...+
T Consensus 621 f~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 621 FRTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred hHHHHHHHHHHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 88888888776665543 2233333333 345444 44455556899999999999999976554433
No 28
>KOG3684|consensus
Probab=98.93 E-value=9.8e-08 Score=100.22 Aligned_cols=87 Identities=25% Similarity=0.417 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy13136 510 LLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 589 (695)
Q Consensus 510 ~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia 589 (695)
.++.+.+.+|.+.+.++-.+|+.....+ .-.+|.+++|+..+|..++||||++|.|.+||.++++..++|..+-++++|
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvA 334 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVA 334 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHH
Confidence 4555666777888888999999666655 456799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy13136 590 VIVSNFAM 597 (695)
Q Consensus 590 ~i~~~f~~ 597 (695)
+|...++.
T Consensus 335 visRKLeL 342 (489)
T KOG3684|consen 335 VIARKLEL 342 (489)
T ss_pred HHHHHHHH
Confidence 99877664
No 29
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.91 E-value=7.2e-08 Score=106.72 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhh---------------hccchh-----
Q psy13136 411 FYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFA---------------SHLENA----- 470 (695)
Q Consensus 411 ~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~---------------~~~~~~----- 470 (695)
.++=.++.++|+..-+.++...+ +.|+++.||++|+++++.++..+...... ....+.
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g--~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~ 291 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG--RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQ 291 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHH
Confidence 45555666677777777776665 58999999999999888776554332110 000011
Q ss_pred ------hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchh
Q psy13136 471 ------DILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIP 544 (695)
Q Consensus 471 ------~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~ 544 (695)
....++-++-.+|++|++|..+.+..+..++..+.+.+...+++++++++-||.+.+..-+ +...+|.++.
T Consensus 292 ~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG---~~~~~f~s~~ 368 (425)
T PF08016_consen 292 WDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFG---SYSEDFSSFS 368 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCccccCCHH
Confidence 1223333456778888999999999999999999999999999999999999999888876 3345799999
Q ss_pred hHHHHHHhhhhc-ccccCCC-ccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy13136 545 LGLWWALVTMTT-VGYGDMA-PKTYVGMFVGALC-ALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 545 ~aly~~~~tltT-vGyGDi~-p~t~~g~~~~~~~-~l~g~~~~~l~ia~i~~~f~~ 597 (695)
.|+...+.++.+ ..|+|+. +....|.++...+ +++.++++|+++|+|.+.+++
T Consensus 369 ~s~~tl~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 369 SSLVTLFRMLLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHHHHHHHhcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988887764 3466553 3445666655544 445578899999999998873
No 30
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.70 E-value=1.5e-08 Score=121.34 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=51.4
Q ss_pred cchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhH
Q psy13136 163 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 218 (695)
Q Consensus 163 ~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~ 218 (695)
..|+||+++|||||||||++|.|..+|++++++|++|++++++.++.+.+-+.+..
T Consensus 252 i~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999988766544
No 31
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.67 E-value=2e-06 Score=102.31 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhh-------------------ccch
Q psy13136 409 AFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFAS-------------------HLEN 469 (695)
Q Consensus 409 ~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~-------------------~~~~ 469 (695)
+.+++-+.....|.++-...++..+.+ .|+++.||++|++....++..++...... ....
T Consensus 390 ~~e~~~~~~~~~~~~~e~~~~~~~g~~-~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (743)
T TIGR00870 390 PLEMLIVTWVDGLRLGEEKLIWLGGIF-EYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIE 468 (743)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHH
Confidence 444445555566666666666665554 89999999999965544433322111100 0001
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCC-------------
Q psy13136 470 ADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAK-ELTLLVFFLVLGIVIFASLVYYAERIQAN------------- 535 (695)
Q Consensus 470 ~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~-~l~~~~~ll~l~~~ifa~l~~~~e~~~~~------------- 535 (695)
...+.+.-++..+|++.+.+..+.+-.+...+.+.+. .+..++++++++++-||+.++.+-.....
T Consensus 469 ~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~ 548 (743)
T TIGR00870 469 EALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARS 548 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 1233444455556666666666665556667777777 88888888888888888876665432111
Q ss_pred ---CCCCCCchhhHHHHHHhhhhcccccCC-----CccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 536 ---PHNDFNSIPLGLWWALVTMTTVGYGDM-----APKTYVGMFVG-ALCALAGVLTIALPVPVIVSNFAMYYSHTQA 604 (695)
Q Consensus 536 ---~~~~f~~~~~aly~~~~tltTvGyGDi-----~p~t~~g~~~~-~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~ 604 (695)
....|.++..++...|.++ .|.+|. ......|.++. ++.+++.++++|++||++.+.+++..++.+.
T Consensus 549 ~~~~~~~f~~~~~s~~~lf~~~--~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~ 624 (743)
T TIGR00870 549 CEKQGNAYSTLFETSQELFWAI--IGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADE 624 (743)
T ss_pred cccccccccCHHHHHHHHHHHH--cCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence 1256777777777766554 454443 11234565544 4555556899999999999999987655443
No 32
>KOG1420|consensus
Probab=98.56 E-value=1.4e-08 Score=107.94 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=63.2
Q ss_pred hhhHhhhhhhcCCCCCC-----CcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 141 CVSLVYYAERIQANPHN-----DFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 141 ~~~~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
.+.++.+.|+.. +|.. +--++|++.|+.+|||+||||||+|-.|..||++.++++++|..++|..++-|..-.-
T Consensus 264 aag~ihllensg-dp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 264 AAGFIHLLENSG-DPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred hcceeehhhcCC-ChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 467888999866 3333 3346899999999999999999999999999999999999999999999988876543
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.34 E-value=2.1e-06 Score=90.54 Aligned_cols=90 Identities=27% Similarity=0.451 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc--cCCC----------CCCCCchhhHHHHHHhhhhcccccC--CCccchhhHHHH
Q psy13136 508 LTLLVFFLVLGIVIFASLVYYAERI--QANP----------HNDFNSIPLGLWWALVTMTTVGYGD--MAPKTYVGMFVG 573 (695)
Q Consensus 508 l~~~~~ll~l~~~ifa~l~~~~e~~--~~~~----------~~~f~~~~~aly~~~~tltTvGyGD--i~p~t~~g~~~~ 573 (695)
+..+++..++.+++||+++|.+... +... ..+..+|.+||+|++.|+||+|||. +.|.++.+.+++
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~ 117 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLV 117 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHH
Confidence 4445566677888999998875421 1111 1345789999999999999999999 678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 574 ALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 574 ~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
++-+++|+++.++.+|++...|++
T Consensus 118 ~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 118 TIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998883
No 34
>KOG1418|consensus
Probab=98.16 E-value=3.6e-06 Score=93.10 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=59.0
Q ss_pred CCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 537 HNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT 602 (695)
Q Consensus 537 ~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~ 602 (695)
...-++|.+|+||+++++||+|||+++|.|..||++++++.++|+.++.+.++-+...+.......
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345579999999999999999999999999999999999999999999999888888877765553
No 35
>KOG3684|consensus
Probab=98.04 E-value=3e-06 Score=89.24 Aligned_cols=73 Identities=26% Similarity=0.421 Sum_probs=62.0
Q ss_pred hhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 142 VSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 142 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
+-++-..||-++..+ .-.++.+++|...+|.-++||||++|.|.-||.+++++.++|..+.++++|+|.-+..
T Consensus 269 sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 269 SWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred HHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 444555698664332 4567999999999999999999999999999999999999999999999999986654
No 36
>KOG3193|consensus
Probab=97.98 E-value=2.3e-05 Score=83.51 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHH
Q psy13136 407 HDAFFYIECLCNAWFTFEILMRFISSP--RKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRL 484 (695)
Q Consensus 407 ~~~l~~~~~~~~~iF~~E~~lk~~~~~--~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~ 484 (695)
...+++++..+.++=+..-++-++... ..-+.+.+.-++++++..+|+++.++++....... --++.+.-.--.
T Consensus 89 ~~~iw~lq~~~a~is~~~ti~~~yl~ysgsvvrllinihfllelitsfpfii~ifipsltylyv----pvflncwlakga 164 (1087)
T KOG3193|consen 89 DFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISIFIPSLTYLYV----PVFLNCWLAKGA 164 (1087)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHhhcccceeeeeccccceeec----hhhhhhhhhhhH
Confidence 345666777777777766666665433 23345556667788888888888877664432110 001111000000
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhccccc
Q psy13136 485 FKLTRHSSGLKILMQTFRASAKELT----LLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYG 560 (695)
Q Consensus 485 lkl~r~~~~l~~l~~~l~~s~~~l~----~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyG 560 (695)
+. ..++.+......+...+. .+...+..+++..-|-+.-+.+.. ..--+.+.++||+++|++|||||
T Consensus 165 --lq---ammndl~r~~~~s~sal~~ql~ll~s~l~clift~~c~i~h~qra~----~k~i~lf~s~y~v~vtfstvgyg 235 (1087)
T KOG3193|consen 165 --LQ---AMMNDLNRKSFISSSALFRQLLLLFSVLACLIFTGMCSIEHLQRAR----GKRIDLFTSFYFVMVTFSTVGYG 235 (1087)
T ss_pred --HH---HhhhhHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHcc----CceeeeeeeEEEEEEEEeecccc
Confidence 00 011222222222222222 222222222221112122222211 12246788999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 561 DMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 561 Di~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~ 596 (695)
|.+|.-+...+++++++-++++++.--.--+.....
T Consensus 236 d~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~ 271 (1087)
T KOG3193|consen 236 DWYPDYWASQLCVVILICVALGLIPKQLDELGQTWS 271 (1087)
T ss_pred ccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999888888887777665554444444
No 37
>KOG3609|consensus
Probab=97.94 E-value=0.00032 Score=79.76 Aligned_cols=203 Identities=14% Similarity=0.276 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhh------c----------cc--
Q psy13136 407 HDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFAS------H----------LE-- 468 (695)
Q Consensus 407 ~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~------~----------~~-- 468 (695)
..+++++=+.-..=++.+=+-.++..|.+ .|++..||++|++....+...+++..... . ..
T Consensus 383 p~~vE~li~~wV~G~iw~E~k~lw~~G~~-~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp 461 (822)
T KOG3609|consen 383 PQALEILIYLWVMGLIWEEIKELWRVGRD-GYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDP 461 (822)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcH
Confidence 34555555555566777777888888877 99999999999988776665554432110 0 00
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhccCC-----
Q psy13136 469 ---NADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASL-----VYYAERIQAN----- 535 (695)
Q Consensus 469 ---~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l-----~~~~e~~~~~----- 535 (695)
.-..+.+--+|-.+|++-++...+.+--+.-.+-+.+..+..++++.+++++-|++. +|+.+..+..
T Consensus 462 ~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~ 541 (822)
T KOG3609|consen 462 SLLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDY 541 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccc
Confidence 012233333445555555555555544444455566667777777777777777764 3333321111
Q ss_pred --CCCCCCchhh---HHHHHHhhhhcccccCCCc----cchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 536 --PHNDFNSIPL---GLWWALVTMTTVGYGDMAP----KTYVGMFV-GALCALAGVLTIALPVPVIVSNFAMYYSHTQAR 605 (695)
Q Consensus 536 --~~~~f~~~~~---aly~~~~tltTvGyGDi~p----~t~~g~~~-~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~ 605 (695)
....|.+... +++|++-.++-++--++.- ...+|.+. .+.-++.-++++|++||.+.+.+++..+++..+
T Consensus 542 ~~~~~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvE 621 (822)
T KOG3609|consen 542 TKTTDSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVE 621 (822)
T ss_pred cccccccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhH
Confidence 0113555544 5677776554333111111 11344443 344444447889999999999999877666555
Q ss_pred HHcHH
Q psy13136 606 AKLPK 610 (695)
Q Consensus 606 ~~~~~ 610 (695)
-|..+
T Consensus 622 WKFAR 626 (822)
T KOG3609|consen 622 WKFAR 626 (822)
T ss_pred HHHHH
Confidence 44433
No 38
>KOG3614|consensus
Probab=97.85 E-value=0.00085 Score=79.59 Aligned_cols=234 Identities=14% Similarity=0.221 Sum_probs=124.6
Q ss_pred hhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHh--hcCCCCCcccccccccccccCCccccccccccCchhHHH
Q psy13136 334 KTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCL--KTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFF 411 (695)
Q Consensus 334 ~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 411 (695)
+++++.+.++..| ..+++.+++..+.++.+++..+ ++.|. .....
T Consensus 779 ~~~~r~~~FysAP----IvkFw~~~l~yi~FL~lftYvlLv~~~~~-----------------------------Ps~~E 825 (1381)
T KOG3614|consen 779 GKLRRIRAFYSAP----IVKFWLNVLSYIAFLLLFTYVLLVDFQPS-----------------------------PSMWE 825 (1381)
T ss_pred hHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHHHHheeccCCC-----------------------------CCccc
Confidence 3455566776666 4455555555555555444433 23221 13344
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc------ccccccccchhhhhhHhHHHHHHHHHhhh-hccchhhH-HHHHHHHHHHH
Q psy13136 412 YIECLCNAWFTFEILMRFISSPRK------CEFIKASVNVIDYIATLSFYIDLLLQKFA-SHLENADI-LEFFSIIRIMR 483 (695)
Q Consensus 412 ~~~~~~~~iF~~E~~lk~~~~~~~------~~y~~~~~n~~D~i~vi~~~i~~~~~~~~-~~~~~~~~-l~~lRllRllR 483 (695)
++-++-.+.+++|-+-+++..... +-|+.++||++|.++++.+++..++.-.+ ......++ +.+--++--+|
T Consensus 826 w~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~r 905 (1381)
T KOG3614|consen 826 WILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLR 905 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHH
Confidence 555566666778888888776531 25999999999999999998887654333 11111111 11112223333
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccc-cCC
Q psy13136 484 LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY-GDM 562 (695)
Q Consensus 484 ~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGy-GDi 562 (695)
++-.+...+.+--.+..+.+-+..+..+++++.+.++-|++.-.-+-. .+......-+=+.|||-.-++-|.=| ++|
T Consensus 906 Ll~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~--P~e~~~w~l~R~i~y~PYlmifGeV~a~eI 983 (1381)
T KOG3614|consen 906 LLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILR--PDEPRHWWLFRNIFYWPYLMLFGEVPADEI 983 (1381)
T ss_pred HhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CCCCchHHHHHHHHHHHHHHHhccccHhhh
Confidence 444333333333333333444556666666666666667765333322 11111122244566666655554333 111
Q ss_pred --------------------C-ccc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 563 --------------------A-PKT----YVGMF-VGALCALAGVLTIALPVPVIVSNFAMYYSHT 602 (695)
Q Consensus 563 --------------------~-p~t----~~g~~-~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~ 602 (695)
. |.. +...+ .++++.+..++++|++||+....|....+..
T Consensus 984 D~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~s 1049 (1381)
T KOG3614|consen 984 DTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENS 1049 (1381)
T ss_pred hhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0 222 22233 3444455558889999998888777654443
No 39
>KOG0498|consensus
Probab=97.80 E-value=1.6e-05 Score=90.77 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=52.5
Q ss_pred ccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHH
Q psy13136 162 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYS 219 (695)
Q Consensus 162 ~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~ 219 (695)
+..|+||++.|||||||||..|++..-++|+++.|++|.++.|++||.+.+-....+.
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 3469999999999999999999999999999999999999999999988877665554
No 40
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.75 E-value=1.7e-05 Score=83.88 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=51.8
Q ss_pred CcccccchhhhhhhhheecccCC--CCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhH
Q psy13136 158 DFNSIPLGLWWALVTMTTVGYGD--MAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 218 (695)
Q Consensus 158 ~~~~~~~~~~~~~~t~ttvgygd--~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~ 218 (695)
...++.+||+|++-|+||+|||. +.|....+-+++.+-++.|+++.++.+++++..|++-.
T Consensus 81 ~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 81 NVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp T-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46789999999999999999999 57889999999999999999999999999999998643
No 41
>KOG4404|consensus
Probab=97.65 E-value=7.6e-05 Score=75.59 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=45.3
Q ss_pred CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~ 596 (695)
+.|.-||||+.+.+||||||-.+|.|..||+|+++..++|+.+-=++...+.+-+.
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999995444444444444444
No 42
>KOG0510|consensus
Probab=97.58 E-value=0.0052 Score=69.63 Aligned_cols=161 Identities=13% Similarity=0.193 Sum_probs=105.8
Q ss_pred ccccccccccchhhhhhHhHHHHHHHHHhhhhccchhh-HHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13136 434 RKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENAD-ILEFF-SIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLL 511 (695)
Q Consensus 434 ~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~-~l~~l-RllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~ 511 (695)
.+.+|+.+.-|++|.++....++........ ....++ .+..+ -+|--++++-++++++.....+..+....+.+...
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~~-~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~ 665 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFFE-ITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKS 665 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHH
Confidence 3558999999999998877766544322110 000111 11111 23445667777778887777777777777788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCC-------------ccchhh-HHHHHHHH
Q psy13136 512 VFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMA-------------PKTYVG-MFVGALCA 577 (695)
Q Consensus 512 ~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~-------------p~t~~g-~~~~~~~~ 577 (695)
..+..++++-|++.+|.+-... ..|.+.+.++.-+++.|- |.-|.+ ..+... .+|+.|++
T Consensus 666 f~vfs~lliaF~lsFYVll~~~----~eFs~p~ms~l~t~~MMi--Ge~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~I 739 (929)
T KOG0510|consen 666 FMVFSILLIAFGLSFYVLLNKS----SEFSNPFMSKLETFVMMI--GENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTI 739 (929)
T ss_pred HHHHHHHHHHhhhhheeeecCC----CCcCCCcchhhhhHHHhh--cccccccccccchhhcCcccchHHHHHHHHHHHH
Confidence 8888888888888888876532 337888888887777764 333332 111222 35777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 578 LAGVLTIALPVPVIVSNFAMYYSH 601 (695)
Q Consensus 578 l~g~~~~~l~ia~i~~~f~~~~~~ 601 (695)
++-++++|+++|..+.-.+...++
T Consensus 740 fmtIvLMNLLiGLAV~DIq~vqk~ 763 (929)
T KOG0510|consen 740 FMTIVLMNLLIGLAVGDIQGVQKH 763 (929)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 888999999999999888865443
No 43
>KOG3676|consensus
Probab=97.33 E-value=0.068 Score=61.10 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC---------CCCchhhHHHHHHhhh--hcccccCCCc--cc---hh
Q psy13136 505 AKELTLLVFFLVLGIVIFASLVYYAERIQANPHN---------DFNSIPLGLWWALVTM--TTVGYGDMAP--KT---YV 568 (695)
Q Consensus 505 ~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~---------~f~~~~~aly~~~~tl--tTvGyGDi~p--~t---~~ 568 (695)
...+..++++-+++++-||..+|.+....+++.. .-.+..+++...+.++ .|+||||..- .+ ..
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~ 619 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVL 619 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHH
Confidence 4567778888888888899888887665544421 2234555565555555 6899999743 33 34
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 569 GMF-VGALCALAGVLTIALPVPVIVSNFAMYYSHT 602 (695)
Q Consensus 569 g~~-~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~ 602 (695)
+++ |+++.+++.++++|++||.+.+......++.
T Consensus 620 ~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 620 FKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 554 5555666678999999999999998766544
No 44
>KOG3827|consensus
Probab=97.19 E-value=0.0016 Score=67.89 Aligned_cols=91 Identities=22% Similarity=0.324 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccC--C---C-------CCCCCchhhHHHHHHhhhhcccccCCCccc--hhhHHH
Q psy13136 507 ELTLLVFFLVLGIVIFASLVYYAERIQA--N---P-------HNDFNSIPLGLWWALVTMTTVGYGDMAPKT--YVGMFV 572 (695)
Q Consensus 507 ~l~~~~~ll~l~~~ifa~l~~~~e~~~~--~---~-------~~~f~~~~~aly~~~~tltTvGyGDi~p~t--~~g~~~ 572 (695)
.+..+.+..++-|++||+++|.+..... . | -.|.++|..||.|++-|=||+|||--+++. +.+.+.
T Consensus 65 ~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~l 144 (400)
T KOG3827|consen 65 MLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFL 144 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHH
Confidence 4556666778889999999988754211 1 1 135678999999999999999999977665 667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 573 GALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 573 ~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
.++-+|+|.++=++.+|.+...+++
T Consensus 145 l~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 145 LVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888999999999999998887774
No 45
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.58 E-value=0.00066 Score=66.13 Aligned_cols=54 Identities=28% Similarity=0.622 Sum_probs=48.4
Q ss_pred CCcccccchhhhhhhhheecccCCCCCc-----ccchhHHH-HHHHHHHHHHhhcchhHh
Q psy13136 157 NDFNSIPLGLWWALVTMTTVGYGDMAPK-----TYVGMFVG-ALCALAGVLTIALPVPVI 210 (695)
Q Consensus 157 ~~~~~~~~~~~~~~~t~ttvgygd~~p~-----t~~g~~~~-~~~~~~gi~~~~~~i~~i 210 (695)
+.|++++.|+||+..++||.||||..|. +..+.++. ++.++++++++++++|++
T Consensus 141 ~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 141 ENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 5689999999999999999999999997 88999988 777778889999999875
No 46
>KOG0501|consensus
Probab=96.54 E-value=0.0028 Score=68.80 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=49.6
Q ss_pred ccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhH
Q psy13136 162 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 218 (695)
Q Consensus 162 ~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~ 218 (695)
+..++||++..|||||||++.|.|.--|+|++..|+.|-++-|...+-+..-|.+.+
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~ 480 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMT 480 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999999999999999999999999999999999888877666666665544
No 47
>KOG3533|consensus
Probab=95.97 E-value=1.4 Score=52.89 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=78.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--------CC-----------------
Q psy13136 482 MRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA--------NP----------------- 536 (695)
Q Consensus 482 lR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~--------~~----------------- 536 (695)
+-+|-++-+-..+..++..+.++.+++....++.++++++|+++.|++.+++. |.
T Consensus 2396 iLLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~ 2475 (2706)
T KOG3533|consen 2396 ILLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPS 2475 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCcc
Confidence 34455555555666666677777788888889999999999999777654321 00
Q ss_pred -------------CCC-CCc-------hhhHHHHHHhhhhcc------cccCCC--ccchh----hHH-H-HHHHHHHHH
Q psy13136 537 -------------HND-FNS-------IPLGLWWALVTMTTV------GYGDMA--PKTYV----GMF-V-GALCALAGV 581 (695)
Q Consensus 537 -------------~~~-f~~-------~~~aly~~~~tltTv------GyGDi~--p~t~~----g~~-~-~~~~~l~g~ 581 (695)
... -++ --++++.+++|...- |-||+- |..+- .|+ | ..|+.++-+
T Consensus 2476 ~tc~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIi 2555 (2706)
T KOG3533|consen 2476 ETCPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVII 2555 (2706)
T ss_pred ccCCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHH
Confidence 000 000 224777777776543 356763 33321 222 1 123444557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy13136 582 LTIALPVPVIVSNFAMYYSHTQARAKL 608 (695)
Q Consensus 582 ~~~~l~ia~i~~~f~~~~~~~~~~~~~ 608 (695)
+++|++.|+|++.|.+...+.+++++.
T Consensus 2556 IVLNLIFGVIIDTFaDLRsEKqkKEeI 2582 (2706)
T KOG3533|consen 2556 IVLNLIFGVIIDTFADLRSEKQKKEEI 2582 (2706)
T ss_pred HHHHHHHHhhhhhHHHHHhhhhHHHHH
Confidence 889999999999999887766554443
No 48
>KOG3193|consensus
Probab=95.61 E-value=0.0049 Score=66.29 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=36.4
Q ss_pred ccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHh
Q psy13136 160 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 203 (695)
Q Consensus 160 ~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~ 203 (695)
-....++||++||.+||||||-+|.-++.++..++.+....+++
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i 259 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI 259 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence 45778999999999999999999999999987776665555443
No 49
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.39 E-value=0.0042 Score=53.15 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=24.5
Q ss_pred CceecCCCCChhhHHHHhhhhccCccCCCccc
Q psy13136 2 GKLHYPTDVCGPLFEEELEFWGLDAPKYKIES 33 (695)
Q Consensus 2 GkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~C 33 (695)
|+||.|.+.|...|.+|++||||++..|+. |
T Consensus 64 ~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~-c 94 (94)
T PF02214_consen 64 GKLPIPDEICLEELLEEAEFYGLDELFIED-C 94 (94)
T ss_dssp SSB---TTS-HHHHHHHHHHHT-HHHHBHH-C
T ss_pred CccCCCCchhHHHHHHHHHHcCCCccccCC-C
Confidence 799999999999999999999999999986 7
No 50
>KOG3827|consensus
Probab=94.83 E-value=0.025 Score=59.19 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=62.8
Q ss_pred cchhhhhHhhhhhhcCC-----CC---C----CCcccccchhhhhhhhheecccCCCCCc--ccchhHHHHHHHHHHHHH
Q psy13136 137 SVFPCVSLVYYAERIQA-----NP---H----NDFNSIPLGLWWALVTMTTVGYGDMAPK--TYVGMFVGALCALAGVLT 202 (695)
Q Consensus 137 ~~~~~~~~~~~~e~~~~-----~~---~----~~~~~~~~~~~~~~~t~ttvgygd~~p~--t~~g~~~~~~~~~~gi~~ 202 (695)
++++||.+.|+.-.-+. .+ + .+.+|+..||-|++-|=||+|||-.++. =+.+-+..++-++.|+++
T Consensus 76 SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii 155 (400)
T KOG3827|consen 76 SWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVII 155 (400)
T ss_pred HHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHH
Confidence 57778877776522111 11 1 3578899999999999999999997664 467778888888999999
Q ss_pred hhcchhHhhhhhHHh
Q psy13136 203 IALPVPVIVSNFAMY 217 (695)
Q Consensus 203 ~~~~i~~i~~~f~~~ 217 (695)
-+..++.++.+.++-
T Consensus 156 ~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 156 NAFMVGAIFAKIARP 170 (400)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998877654
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=93.48 E-value=0.023 Score=52.84 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=52.7
Q ss_pred chhhhhHhhhhhhcCCCCC---------CCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchh
Q psy13136 138 VFPCVSLVYYAERIQANPH---------NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 208 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~---------~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~ 208 (695)
+++++.++|++++-.+... ....++.+++|++..+++. +-++..|.+..+|++.++|.++++++.+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta 90 (148)
T PF00060_consen 12 ILLVSLVLWLFERFSPYEWRKNQSSPPRRWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTA 90 (148)
T ss_dssp HHHHHTTGGGT------------------HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccccCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788776332111 1234588899999888876 55779999999999999999999999999999
Q ss_pred HhhhhhHHh
Q psy13136 209 VIVSNFAMY 217 (695)
Q Consensus 209 ~i~~~f~~~ 217 (695)
.+.+.+...
T Consensus 91 ~L~s~Lt~~ 99 (148)
T PF00060_consen 91 NLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHhccc
Confidence 999887654
No 52
>KOG4440|consensus
Probab=92.98 E-value=0.08 Score=58.32 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=61.7
Q ss_pred cchhhhhHhhhhhhcCCCCC----------CCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcc
Q psy13136 137 SVFPCVSLVYYAERIQANPH----------NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALP 206 (695)
Q Consensus 137 ~~~~~~~~~~~~e~~~~~~~----------~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~ 206 (695)
++-+++.++|+.++..+++. ..=-++..|+||+--.+.--|-|.-.|.+-..|+++++|+-+.++++|..
T Consensus 579 SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASY 658 (993)
T KOG4440|consen 579 SVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 658 (993)
T ss_pred HHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhh
Confidence 34556788898887654221 12335889999998888889999999999999999999999999999988
Q ss_pred hhHhhhhh
Q psy13136 207 VPVIVSNF 214 (695)
Q Consensus 207 i~~i~~~f 214 (695)
++.+..-+
T Consensus 659 TANLAAFL 666 (993)
T KOG4440|consen 659 TANLAAFL 666 (993)
T ss_pred hhhhhhhe
Confidence 87776543
No 53
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.66 E-value=0.13 Score=47.67 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=44.1
Q ss_pred CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 598 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~ 598 (695)
.++.+++|+.+.+++. +-++..|++..+|++.+++.++++++.+.+.|.+.+.+...
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577889988888887 44779999999999999999999999999999999988843
No 54
>KOG0500|consensus
Probab=91.43 E-value=0.24 Score=53.60 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=45.7
Q ss_pred ccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHH
Q psy13136 162 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 162 ~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~ 216 (695)
+.-++||+..||||+| ---.|.|..-..+.++=.++|++++|..++.+.+-.++
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 5679999999999986 23589999999999999999999999998766654444
No 55
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.84 E-value=12 Score=42.21 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=35.3
Q ss_pred chhhHHHHHHhhhhccccc--CCCccchh------hHHHHHHHHHHH-HHHHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVGYG--DMAPKTYV------GMFVGALCALAG-VLTIALPVPV 590 (695)
Q Consensus 542 ~~~~aly~~~~tltTvGyG--Di~p~t~~------g~~~~~~~~l~g-~~~~~l~ia~ 590 (695)
++.++++=++.++.|||=+ -..+.+.. +++..++.|+.| +-++.+++..
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~~ 481 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVLF 481 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHhh
Confidence 6999999999999999853 33323333 499999999999 6666654443
No 56
>KOG1052|consensus
Probab=90.29 E-value=0.13 Score=60.46 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred cchhhhhHhhhhhhcCCCCC------CCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHh
Q psy13136 137 SVFPCVSLVYYAERIQANPH------NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVI 210 (695)
Q Consensus 137 ~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i 210 (695)
++++++.++|+.++-.+... ..+-+..+++|.++.++...|-. ..|.+..+|++.++|.++++++.+..+|.+
T Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L 429 (656)
T KOG1052|consen 351 SLLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANL 429 (656)
T ss_pred HHHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999998443222 33455677889998888888855 999999999999999999999999999988
Q ss_pred hhhhHH
Q psy13136 211 VSNFAM 216 (695)
Q Consensus 211 ~~~f~~ 216 (695)
.+-++.
T Consensus 430 ~a~Lt~ 435 (656)
T KOG1052|consen 430 TAFLTV 435 (656)
T ss_pred HHHhcc
Confidence 776553
No 57
>PLN03223 Polycystin cation channel protein; Provisional
Probab=89.65 E-value=20 Score=44.25 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy13136 406 AHDAFFYIECLCNAWFTFEILM 427 (695)
Q Consensus 406 ~~~~l~~~~~~~~~iF~~E~~l 427 (695)
+..+|.++|++..++-+.-+++
T Consensus 1211 FKSfWNwLEIl~IlLS~AAIvL 1232 (1634)
T PLN03223 1211 FLSGWNYVDFASIGLHLATIMM 1232 (1634)
T ss_pred hccchHHHHHHHHHHHHHHHHH
Confidence 4567778887766666666554
No 58
>KOG1054|consensus
Probab=89.17 E-value=0.17 Score=55.54 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=48.2
Q ss_pred cccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 161 ~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
+|.+++||+.-...--| -|+.|.+..||+++.+|-++-+++++..++.+..-++
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 58999999999988888 6999999999999999999999999988887776544
No 59
>KOG0499|consensus
Probab=84.01 E-value=0.93 Score=50.25 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=47.9
Q ss_pred ccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 160 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 160 ~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
..+.-++|||+-|+||+| |.-.|.|..--++..+--++||+++++.|+-|-+-.+
T Consensus 402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 402 NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446779999999999999 9999999999999998889999999999987655443
No 60
>KOG1053|consensus
Probab=83.12 E-value=0.98 Score=52.31 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHhhcchhhhccCCcchhhhhhhHH--HhhhcCCCCCccceeeeeeeeeeccccccccccccceeccccCcccchhhhhH
Q psy13136 67 ARKFGFEEAYFKGRLSWWQKTKPQL--WSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSL 144 (695)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~i--W~l~e~P~SS~~aki~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 144 (695)
++-+||+-|++++++++..+.+.-- =..|=+|+|-..-. .+|.. .+..++..
T Consensus 528 SevVDFSvPFveTgIsVmV~rsngtvspsAFLePfs~svWV------------mmFVm--------------~livaai~ 581 (1258)
T KOG1053|consen 528 SEVVDFSVPFVETGISVMVARSNGTVSPSAFLEPFSPSVWV------------MMFVM--------------CLIVAAIT 581 (1258)
T ss_pred hccccccccccccceEEEEEecCCccCchhhcCCcchHHHH------------HHHHH--------------HHHHHHHH
Confidence 3779999999999987655433210 01122344432211 11110 12223455
Q ss_pred hhhhhhcCC-----------CCCCCcccccchhh--hhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhh
Q psy13136 145 VYYAERIQA-----------NPHNDFNSIPLGLW--WALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIV 211 (695)
Q Consensus 145 ~~~~e~~~~-----------~~~~~~~~~~~~~~--~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~ 211 (695)
++++|-..+ .|+..--+|..|+| |+.|-=-||- --.|+.+.+|+.+.+|++++++.+|..+|.+.
T Consensus 582 vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLA 659 (1258)
T KOG1053|consen 582 VFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLA 659 (1258)
T ss_pred HHHHhhcCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665443 12223346999999 7766433321 13567889999999999999999999888776
Q ss_pred hhhH
Q psy13136 212 SNFA 215 (695)
Q Consensus 212 ~~f~ 215 (695)
.-..
T Consensus 660 AfMI 663 (1258)
T KOG1053|consen 660 AFMI 663 (1258)
T ss_pred HHHh
Confidence 6443
No 61
>KOG3733|consensus
Probab=82.19 E-value=60 Score=35.12 Aligned_cols=107 Identities=10% Similarity=0.142 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc------------hhhHHH
Q psy13136 481 IMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNS------------IPLGLW 548 (695)
Q Consensus 481 llR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~------------~~~aly 548 (695)
-+-++|.+.+.+..+.++-++..++++++.+..-..++.+-|....|.+-+- -+..|.+ -+|-|+
T Consensus 387 W~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP---YHdKFrsLntvsECLFSLINGDDMF 463 (566)
T KOG3733|consen 387 WFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP---YHDKFRSLNTVSECLFSLINGDDMF 463 (566)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc---hHHhhhhHHHHHHHHHHhhCchhHH
Confidence 3455666677778888999999999999988877666665555544444331 1122333 123333
Q ss_pred HHHhhhhcccccCCCccch----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 549 WALVTMTTVGYGDMAPKTY----VGM-FVGALCALAGVLTIALPVPVIVSNFAMY 598 (695)
Q Consensus 549 ~~~~tltTvGyGDi~p~t~----~g~-~~~~~~~l~g~~~~~l~ia~i~~~f~~~ 598 (695)
-+|.+|.. ++. ..+ ++-+++.++-++++++|||+|.+.+...
T Consensus 464 aTFA~mqq--------kS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTI 510 (566)
T KOG3733|consen 464 ATFATMQQ--------KSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTI 510 (566)
T ss_pred HHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33444432 222 122 2345667777899999999999888754
No 62
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=77.56 E-value=70 Score=30.83 Aligned_cols=52 Identities=10% Similarity=-0.094 Sum_probs=44.7
Q ss_pred CCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy13136 538 NDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 589 (695)
Q Consensus 538 ~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia 589 (695)
+.-.+|.|-+|++|+.-||-.=.|+.+.+..-|-.+..-.++++++-+.++|
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3335699999999999999989999999999999999998888887777665
No 63
>KOG1052|consensus
Probab=73.00 E-value=11 Score=44.22 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 540 FNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 540 f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
+.+..+++|+++.++..-| ++..|.+..+|++..+|.++++++.+..+|.+.+.+..
T Consensus 379 ~~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 379 LFSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred EeecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556788888788777 55999999999999999999999999999988777663
No 64
>KOG4440|consensus
Probab=72.73 E-value=7.9 Score=43.38 Aligned_cols=83 Identities=14% Similarity=0.366 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccC----------CCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHH
Q psy13136 513 FFLVLGIVIFASLVYYAERIQA----------NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVL 582 (695)
Q Consensus 513 ~ll~l~~~ifa~l~~~~e~~~~----------~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~ 582 (695)
+++++-+++-|+.+|...+... .....--|+..|+||+--.+..-|-|+-+|.+-.+|++.++|.=++++
T Consensus 574 ~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMI 653 (993)
T KOG4440|consen 574 LLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMI 653 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhhee
Confidence 3344555666777776654111 111222468889999988888889999999999999999999988888
Q ss_pred HHHHHHHHHHHHH
Q psy13136 583 TIALPVPVIVSNF 595 (695)
Q Consensus 583 ~~~l~ia~i~~~f 595 (695)
+++-.+|.+...+
T Consensus 654 iVASYTANLAAFL 666 (993)
T KOG4440|consen 654 IVASYTANLAAFL 666 (993)
T ss_pred eehhhhhhhhhhe
Confidence 8888888775543
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=72.53 E-value=1.1e+02 Score=33.28 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCcc
Q psy13136 492 SGLKILMQTFRASAKELTLLVFFLVLGIVIFASL------VYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPK 565 (695)
Q Consensus 492 ~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l------~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~ 565 (695)
...+.++.++..++-.+..+.+-+.+..+-.|.- .-.+-++. ....-+..|.-+|-|++..+-+++=++....
T Consensus 45 ~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~-~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~ 123 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDR-VTQVVLGTFIGTFVYSLLVLIAIRSGDYGSV 123 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHccccccccC
Confidence 3456667777777777666666655555544432 11111100 0011123477788888888887774444223
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 566 TYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 566 t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
...+-.+++++.++.+++|-+++.-+...++-
T Consensus 124 p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv 155 (371)
T PF10011_consen 124 PRLSVFIALALAILSVVLLIYFIHHIARSIQV 155 (371)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 33444566666666677777777777665553
No 66
>KOG3676|consensus
Probab=70.93 E-value=6.6 Score=45.53 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=44.7
Q ss_pred ccccchhhhhhhhh--eecccCCC--CCcc---cchhHHHHHHHH-HHHHHhhcchhHhhhhhHHhHHH
Q psy13136 160 NSIPLGLWWALVTM--TTVGYGDM--APKT---YVGMFVGALCAL-AGVLTIALPVPVIVSNFAMYYSH 220 (695)
Q Consensus 160 ~~~~~~~~~~~~t~--ttvgygd~--~p~t---~~g~~~~~~~~~-~gi~~~~~~i~~i~~~f~~~~~~ 220 (695)
.+..+++.-++.|+ .|+||||. .+.+ ..++++-+++++ +-|++++|.||.+.+.+.....+
T Consensus 585 ~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~ 653 (782)
T KOG3676|consen 585 CNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQE 653 (782)
T ss_pred CChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 34456555555555 79999995 5566 688887777764 78889999999999888765544
No 67
>KOG1053|consensus
Probab=67.29 E-value=62 Score=38.39 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=38.7
Q ss_pred CchhhHHHHHHhhhhcccccCC----CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDM----APKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi----~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~ 596 (695)
-+++.|+|-+-..+ |+.. .|+.+.+|+.+.+|.++++++++..+|.+...+.
T Consensus 608 FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred eehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777887333333 2444 4567889999999999999999998888877665
No 68
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=61.38 E-value=1.1e+02 Score=28.14 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=16.0
Q ss_pred CchhhHHHHHHhhhhcccc--cCC--Cccc
Q psy13136 541 NSIPLGLWWALVTMTTVGY--GDM--APKT 566 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGy--GDi--~p~t 566 (695)
-++.+.+..+.+ +|.++| ||. -|++
T Consensus 28 ~sf~~~l~~sl~-ltvvaY~iGDl~ILPr~ 56 (136)
T PF10710_consen 28 ASFGDILLISLV-LTVVAYLIGDLFILPRT 56 (136)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHheeeCC
Confidence 367777776655 667777 774 4543
No 69
>PRK10750 potassium transporter; Provisional
Probab=61.15 E-value=55 Score=36.92 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=35.1
Q ss_pred chhhHHHHHHhhhhccc--ccCC----CccchhhHHHHHHHHHHH-HHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVG--YGDM----APKTYVGMFVGALCALAG-VLTIALPV 588 (695)
Q Consensus 542 ~~~~aly~~~~tltTvG--yGDi----~p~t~~g~~~~~~~~l~g-~~~~~l~i 588 (695)
+..+|+--+..+++++| .|.. ..-+..+|++.++.|+.| +-++++.+
T Consensus 421 ~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~ 474 (483)
T PRK10750 421 DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLV 474 (483)
T ss_pred cHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889988888888887 4433 345678999999999999 55555443
No 70
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=60.60 E-value=2.6 Score=42.67 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=26.0
Q ss_pred cccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHH
Q psy13136 327 GRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFI 363 (695)
Q Consensus 327 ~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI 363 (695)
...+.|..+|+.++++++|+ ||..||+++|
T Consensus 210 ~~g~~W~~~R~~c~~iVeh~-------~FEtfIifmI 239 (239)
T PF06512_consen 210 GFGKIWWNLRKTCYRIVEHK-------WFETFIIFMI 239 (239)
T ss_pred CcchhHHHHHhhheeeeccc-------chhheeeeeC
Confidence 34467999999999999997 9999999876
No 71
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=54.97 E-value=1.3e+02 Score=34.32 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCchhhHHHHHHhhhhccc--ccCCCccchhhHHHHHHHHHHH-HHHHHHHHHH
Q psy13136 540 FNSIPLGLWWALVTMTTVG--YGDMAPKTYVGMFVGALCALAG-VLTIALPVPV 590 (695)
Q Consensus 540 f~~~~~aly~~~~tltTvG--yGDi~p~t~~g~~~~~~~~l~g-~~~~~l~ia~ 590 (695)
...+.+-+|=......|+| .|++.+.|+.+++..++.|++| +..+.+.+++
T Consensus 449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAl 502 (559)
T PRK05482 449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAI 502 (559)
T ss_pred CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888887777788888 6678899999999999999999 6666665554
No 72
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=54.89 E-value=2e+02 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy13136 409 AFFYIECLCNAWFTFEILMRFIS 431 (695)
Q Consensus 409 ~l~~~~~~~~~iF~~E~~lk~~~ 431 (695)
++..+-.+|.+.|++-++.+++-
T Consensus 207 W~~Ql~R~fvisFLiS~~WNWiy 229 (549)
T PF05934_consen 207 WFTQLRRMFVISFLISFGWNWIY 229 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777776666653
No 73
>KOG4220|consensus
Probab=54.25 E-value=1.7e+02 Score=32.03 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHH
Q psy13136 421 FTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLL 460 (695)
Q Consensus 421 F~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~ 460 (695)
|+.-.++.-|..| .-.-+.|--+|.++.-.+++.+++
T Consensus 87 ~t~Y~lmg~W~LG---~~~CdlWLalDYvaSNASVmNLLi 123 (503)
T KOG4220|consen 87 YTTYTLMGYWPLG---PLVCDLWLALDYVASNASVMNLLI 123 (503)
T ss_pred HHHHHHHcccccc---hHHHHHHHHHHHHhhhhhhhhhhe
Confidence 4444444434333 224566767777777666655543
No 74
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.94 E-value=8.9 Score=36.80 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=40.6
Q ss_pred CCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhc
Q psy13136 155 PHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 205 (695)
Q Consensus 155 ~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~ 205 (695)
|+-.+-....+.||.+.+++|+||+++.|.+..+.......++.+......
T Consensus 111 p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 111 PELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred CCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 444467888999999999999999999999888888777777666555444
No 75
>KOG3643|consensus
Probab=50.44 E-value=1e+02 Score=33.67 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHhhhhcc--cccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 549 WALVTMTTV--GYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 549 ~~~~tltTv--GyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
..+.||||+ |+.+..|+...-|.+=+++.+|=+++|.-++-...-++..
T Consensus 280 TTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~ 330 (459)
T KOG3643|consen 280 TTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMF 330 (459)
T ss_pred ehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355667774 6778888887766666666665555555544444444443
No 76
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=48.60 E-value=5.4e+02 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q psy13136 407 HDAFFYIECLCNAWFTFEILMRFI 430 (695)
Q Consensus 407 ~~~l~~~~~~~~~iF~~E~~lk~~ 430 (695)
...+.++|.+...+|+.=+++++.
T Consensus 420 ~~~wn~~d~~~~~~~~~~~~~~~~ 443 (743)
T TIGR00870 420 HQLWNILDFGMNSFYLATFLDRPF 443 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445566666555555555555554
No 77
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=48.55 E-value=94 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=20.5
Q ss_pred cCC-CCCcccchhHHHHHH-HHHHHHHhhcchhHhhhhhHH
Q psy13136 178 YGD-MAPKTYVGMFVGALC-ALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 178 ygd-~~p~t~~g~~~~~~~-~~~gi~~~~~~i~~i~~~f~~ 216 (695)
||. .+|+|...-+-+-.| ++.||+++-..+-++...|+.
T Consensus 14 y~ecls~~~~psffsthm~tILiaIvVliiiiivli~lcss 54 (189)
T PF05568_consen 14 YGECLSPVTPPSFFSTHMYTILIAIVVLIIIIIVLIYLCSS 54 (189)
T ss_pred hhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 355555554444333 345666665555556666654
No 78
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=47.76 E-value=40 Score=27.54 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHhhhhHHHhhhcccchhhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q psy13136 314 MARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKT 374 (695)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t 374 (695)
..+.++.+.+..+++.+ . +.....+.||.|. ...+++++++++++++++.+.+.-
T Consensus 14 sl~~f~S~~ai~~E~~R----~-~~~~~~IIHP~S~-fR~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 14 SLRVFGSKKAIEKEKER----Q-RSSGPWIIHPFSK-FRFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred HHHHHccHHHHHHHHHH----H-hcCCCeEEcCCcc-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555554444221 1 2233456788766 577899999999999998876653
No 79
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=41.48 E-value=58 Score=35.58 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCchhhHHHHHHhhhhccccc--CCCccchhhHHHHHHHHHHH
Q psy13136 540 FNSIPLGLWWALVTMTTVGYG--DMAPKTYVGMFVGALCALAG 580 (695)
Q Consensus 540 f~~~~~aly~~~~tltTvGyG--Di~p~t~~g~~~~~~~~l~g 580 (695)
...+.+++++...+++|.||. |..--++..+++.+++|++|
T Consensus 229 ~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 229 FGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 345788999999999999975 44444566778888887777
No 80
>COG4907 Predicted membrane protein [Function unknown]
Probab=41.36 E-value=22 Score=38.56 Aligned_cols=12 Identities=17% Similarity=0.074 Sum_probs=4.9
Q ss_pred CCCCccceeeee
Q psy13136 98 PYSSNSAKDNEA 109 (695)
Q Consensus 98 P~SS~~aki~a~ 109 (695)
|.-+..+++.++
T Consensus 294 ~~~~kp~~vn~i 305 (595)
T COG4907 294 KSKNKPIKVNRI 305 (595)
T ss_pred CcCCCCcEEEEe
Confidence 333444444443
No 81
>KOG1054|consensus
Probab=39.90 E-value=31 Score=38.75 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=47.1
Q ss_pred chhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 542 ~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~ 596 (695)
..++++||+.-.+..-| -||.|++..||+....|-++.+++++-.+|.+...+.
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 47899999999999999 7999999999999999988888888888887766554
No 82
>KOG3609|consensus
Probab=39.18 E-value=3.3e+02 Score=32.43 Aligned_cols=86 Identities=8% Similarity=0.099 Sum_probs=53.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHhccccc-----ccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHH
Q psy13136 400 DKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRK-----CEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILE 474 (695)
Q Consensus 400 ~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~-----~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~ 474 (695)
.+...-...++.++|++...+|+.-+++|+.+.... ..+-|.-|.-+|-..+--.... +--
T Consensus 408 ~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfA--------------iA~ 473 (822)
T KOG3609|consen 408 VGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFA--------------IAN 473 (822)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHH--------------HHH
Confidence 344455688999999999999999999999986643 1344677877775433222111 122
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH
Q psy13136 475 FFSIIRIMRLFKLTRHSSGLKILMQ 499 (695)
Q Consensus 475 ~lRllRllR~lkl~r~~~~l~~l~~ 499 (695)
+|..+|++-++-.-.+...+++-+.
T Consensus 474 V~S~lrl~~i~t~n~~lGPlqISlG 498 (822)
T KOG3609|consen 474 VLSFLKLFYIFTMNPSLGPLQISLG 498 (822)
T ss_pred HHHHHHHHHHhhccccccchhhhHH
Confidence 3334455555555555555554433
No 83
>COG4325 Predicted membrane protein [Function unknown]
Probab=38.88 E-value=5.4e+02 Score=27.88 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=27.2
Q ss_pred chhhHHHHHHhhhhccc-----ccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVG-----YGDMAPKTYVGMFVGALCALAGVLTIALPVPVIV 592 (695)
Q Consensus 542 ~~~~aly~~~~tltTvG-----yGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~ 592 (695)
.|.-+|-|+...++|+| ||...|+-.. ...+++.++.+..+-+|+..+.
T Consensus 132 ~FlctFvysl~vlrtvg~e~d~~g~FIp~~av--tv~lLlaiisig~~iyfl~~l~ 185 (464)
T COG4325 132 IFLCTFVYSLGVLRTVGEERDGQGAFIPKVAV--TVSLLLAIISIGALIYFLHHLM 185 (464)
T ss_pred HHHHHHHHHHHHHHHhhhccCccccceehHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888877 4455555332 2333344444444444444444
No 84
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=38.79 E-value=1.2e+02 Score=33.18 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.9
Q ss_pred CchhhHHHHHHhhhhcccc--cC-CCccchhhHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGY--GD-MAPKTYVGMFVGALCALAG 580 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGy--GD-i~p~t~~g~~~~~~~~l~g 580 (695)
.++.++++=++..+.|+|- |. ...-++.+|++.++.|+.|
T Consensus 347 ~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 347 YDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 4788999999999999994 42 3445678999999988875
No 85
>COG3817 Predicted membrane protein [Function unknown]
Probab=38.58 E-value=88 Score=31.54 Aligned_cols=41 Identities=34% Similarity=0.663 Sum_probs=30.7
Q ss_pred CCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHH
Q psy13136 539 DFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAG 580 (695)
Q Consensus 539 ~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g 580 (695)
|-..+..+++|..-.+|-+| ||..|.-..|.+...+-.+.|
T Consensus 29 np~r~~t~~FW~l~~~tFl~-g~~lp~~viG~ivillAliag 69 (313)
T COG3817 29 NPVRFGTGLFWGLFSLTFLG-GDRLPNIVIGLIVILLALIAG 69 (313)
T ss_pred CCceecchHHHHHHHHHHhc-cccccchhHhHHHHHHHHHHh
Confidence 34678899999999999888 898888777766554444444
No 86
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.51 E-value=87 Score=24.45 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy13136 582 LTIALPVPVIVSNFA 596 (695)
Q Consensus 582 ~~~~l~ia~i~~~f~ 596 (695)
++++.+++.+.....
T Consensus 28 f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 28 FLLGALLGWLLSLPS 42 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 87
>KOG3599|consensus
Probab=35.50 E-value=6.6e+02 Score=30.34 Aligned_cols=27 Identities=0% Similarity=0.063 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13136 406 AHDAFFYIECLCNAWFTFEILMRFISS 432 (695)
Q Consensus 406 ~~~~l~~~~~~~~~iF~~E~~lk~~~~ 432 (695)
....++++|.++.++.++-+++.++-.
T Consensus 496 ~~s~wN~ld~~i~~ls~~~~~~~~~r~ 522 (798)
T KOG3599|consen 496 VRSKWNWLDLAIVLLSVVLLVLMITRT 522 (798)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888887777777766543
No 88
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=35.25 E-value=1.2e+02 Score=32.52 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=25.9
Q ss_pred hhhHHHHHHhhhhcccc--cCCCcc-c---hhhHHHHHHHHHHH
Q psy13136 543 IPLGLWWALVTMTTVGY--GDMAPK-T---YVGMFVGALCALAG 580 (695)
Q Consensus 543 ~~~aly~~~~tltTvGy--GDi~p~-t---~~g~~~~~~~~l~g 580 (695)
+.++++=+...+.|+|. |...|. + +.+|++.++.|+.|
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 68899999999999984 442222 2 44999999999998
No 89
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=33.96 E-value=3.7e+02 Score=24.59 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 575 LCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 575 ~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
+.++++++++-+.+-+++..+++
T Consensus 32 ~tILiaIvVliiiiivli~lcss 54 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSS 54 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777777777777774
No 90
>KOG3088|consensus
Probab=33.38 E-value=5.7e+02 Score=26.52 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13136 570 MFVGALCALAGVLTIAL 586 (695)
Q Consensus 570 ~~~~~~~~l~g~~~~~l 586 (695)
.+.+.++++++.+++.+
T Consensus 238 ~i~v~i~m~i~a~~Ft~ 254 (313)
T KOG3088|consen 238 NIAVGILMLIGAGLFTL 254 (313)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34555556666555444
No 91
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.39 E-value=5.4e+02 Score=29.21 Aligned_cols=49 Identities=4% Similarity=0.106 Sum_probs=30.6
Q ss_pred CchhhHHHHHHhhhhcccccCCCccc-------hhhHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKT-------YVGMFVGALCALAGVLTIALPVPV 590 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t-------~~g~~~~~~~~l~g~~~~~l~ia~ 590 (695)
.++.||++.++.+++|-||. .++.+ +.-.+..+++|++|-+-|.+..-.
T Consensus 197 m~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~~ 252 (499)
T COG0168 197 MPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGIGFPVHYRL 252 (499)
T ss_pred CCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcCChHHHHHH
Confidence 46777999999999999975 43332 333455566666664444443333
No 92
>KOG2082|consensus
Probab=27.75 E-value=1.1e+03 Score=28.15 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy13136 523 ASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAG---VLTIALPVPVIVSNFAMYY 599 (695)
Q Consensus 523 a~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g---~~~~~l~ia~i~~~f~~~~ 599 (695)
||.+...-+ ..|+.+.|.-|..++=+. |..+++++|+.. +.++++.++.++-.+.++.
T Consensus 587 aCavqtLLr-tPnWRPRfkyyHW~LSfl------------------G~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEyk 647 (1075)
T KOG2082|consen 587 ACAVQTLLR-TPNWRPRFKYYHWSLSFL------------------GASLCLAIMFISSWYYALVAMLIAGVIYKYIEYK 647 (1075)
T ss_pred HHHHHHHhc-CCCCCccchhhhhHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444443333 345666666665554332 233444444433 7777777777776666544
Q ss_pred H
Q psy13136 600 S 600 (695)
Q Consensus 600 ~ 600 (695)
-
T Consensus 648 G 648 (1075)
T KOG2082|consen 648 G 648 (1075)
T ss_pred c
Confidence 3
No 93
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.20 E-value=45 Score=31.75 Aligned_cols=52 Identities=29% Similarity=0.302 Sum_probs=38.5
Q ss_pred CCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHH
Q psy13136 535 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 586 (695)
Q Consensus 535 ~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l 586 (695)
+|+-..-....++||...+++++||+++.+.+..+.......++.+......
T Consensus 110 ~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 110 NPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred CCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 4444456778888999999999999999999888777666666655444433
No 94
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=25.64 E-value=9.1e+02 Score=26.52 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 478 IIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASL 525 (695)
Q Consensus 478 llRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l 525 (695)
.+|++|.+|..+.+..+-.-+......+.....+++++++..-..+.+
T Consensus 308 ~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l 355 (425)
T PF08016_consen 308 WLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYL 355 (425)
T ss_pred HHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333444443444443333333333
No 95
>KOG2243|consensus
Probab=24.50 E-value=1.9e+02 Score=36.06 Aligned_cols=118 Identities=14% Similarity=0.227 Sum_probs=58.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccCCCCCCCCchhhHHHHHHh--h
Q psy13136 483 RLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAER-------IQANPHNDFNSIPLGLWWALV--T 553 (695)
Q Consensus 483 R~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~-------~~~~~~~~f~~~~~aly~~~~--t 553 (695)
.++.+.--++.+|.++..+..+-+++...+.++.+++++|.++.+.+.+ +++.|+-.-++...+..|-.- .
T Consensus 4794 hlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgv 4873 (5019)
T KOG2243|consen 4794 HLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGV 4873 (5019)
T ss_pred HHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeee
Confidence 3444444556666666666666666666666777777777776333322 222333222333333222111 0
Q ss_pred hhcccccCCC--ccc-hhh--H-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 554 MTTVGYGDMA--PKT-YVG--M-FVG-ALCALAGVLTIALPVPVIVSNFAMYYS 600 (695)
Q Consensus 554 ltTvGyGDi~--p~t-~~g--~-~~~-~~~~l~g~~~~~l~ia~i~~~f~~~~~ 600 (695)
-.+-|-||-. |.. ..+ | +|- .|+.++-+++++++-|.|++.|.+...
T Consensus 4874 ragggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrd 4927 (5019)
T KOG2243|consen 4874 RAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRD 4927 (5019)
T ss_pred ecCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHh
Confidence 1222344432 111 111 1 222 223333356778888889999986554
No 96
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.83 E-value=3.1e+02 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=15.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q psy13136 565 KTYVGMFVGALCALAGVLTIALPV 588 (695)
Q Consensus 565 ~t~~g~~~~~~~~l~g~~~~~l~i 588 (695)
.+|++-+..+++++.-+++++.++
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHH
Confidence 566776776777776666655433
No 97
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.30 E-value=27 Score=35.55 Aligned_cols=19 Identities=5% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13136 354 IIGVVSVFFICISILSFCL 372 (695)
Q Consensus 354 ~f~~~i~~lI~~s~i~~~~ 372 (695)
.|..+.+++-++-.+.+++
T Consensus 26 ~~~~llll~ail~w~~iim 44 (381)
T PF05297_consen 26 LFGLLLLLVAILVWFFIIM 44 (381)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333
No 98
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=21.69 E-value=1.3e+02 Score=29.04 Aligned_cols=55 Identities=11% Similarity=-0.070 Sum_probs=45.8
Q ss_pred CCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchh
Q psy13136 154 NPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 208 (695)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~ 208 (695)
+|++.-..++|=+|++.+.-||-.-.|+.+.|..-|-++..=.+.+++....+++
T Consensus 125 FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 125 FPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556799999999999999999999999999999988888888877766554
No 99
>KOG1608|consensus
Probab=21.61 E-value=9.3e+02 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=11.5
Q ss_pred HHHhhhhcccccCCCcc
Q psy13136 549 WALVTMTTVGYGDMAPK 565 (695)
Q Consensus 549 ~~~~tltTvGyGDi~p~ 565 (695)
..++.+.|+|||--...
T Consensus 264 tliiaVlt~gfgla~~e 280 (374)
T KOG1608|consen 264 TLIIAVLTVGFGLAGAE 280 (374)
T ss_pred HHHHHHHHHHhhhcccc
Confidence 55667778999865433
No 100
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=21.03 E-value=3e+02 Score=25.38 Aligned_cols=17 Identities=6% Similarity=0.303 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH-HH
Q psy13136 570 MFVGALCALAGVLTI-AL 586 (695)
Q Consensus 570 ~~~~~~~~l~g~~~~-~l 586 (695)
+++=++++++|++++ ++
T Consensus 16 ~~iRLViIVggYiLlRPY 33 (140)
T PF07543_consen 16 KWIRLVIIVGGYILLRPY 33 (140)
T ss_pred hhhhhhhhhhHHHHHHHH
Confidence 345567788887777 56
No 101
>PRK10750 potassium transporter; Provisional
Probab=20.95 E-value=5e+02 Score=29.35 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=17.1
Q ss_pred CchhhHHHHHHhhhhcccc
Q psy13136 541 NSIPLGLWWALVTMTTVGY 559 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGy 559 (695)
.++++|+..++.++.|-||
T Consensus 205 m~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 205 MDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred CcHHHHHHHHHHHHhccCc
Confidence 5799999999999999886
No 102
>PF15050 SCIMP: SCIMP protein
Probab=20.87 E-value=2.5e+02 Score=24.92 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13136 581 VLTIALPVPVIVSNFAM 597 (695)
Q Consensus 581 ~~~~~l~ia~i~~~f~~ 597 (695)
++++++.+|.|+--.-+
T Consensus 16 II~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777654443
Done!