Query psy13136
Match_columns 695
No_of_seqs 526 out of 3029
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:29:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 100.0 2.8E-43 9.5E-48 392.8 23.9 245 353-601 182-434 (514)
2 3rvy_A ION transport protein; 100.0 2.1E-33 7.3E-38 292.2 11.4 227 333-605 17-249 (285)
3 1orq_C Potassium channel; volt 100.0 3E-31 1E-35 265.9 22.2 217 341-597 3-220 (223)
4 3beh_A MLL3241 protein; transm 100.0 4.2E-30 1.4E-34 276.1 14.9 211 353-600 8-219 (355)
5 4dxw_A Navrh, ION transport pr 100.0 3.1E-29 1E-33 252.3 12.4 217 338-597 4-225 (229)
6 3um7_A Potassium channel subfa 99.9 1.2E-22 4.1E-27 208.6 11.1 75 515-598 206-286 (309)
7 3ukm_A Potassium channel subfa 99.9 1.1E-21 3.8E-26 198.3 11.7 76 513-596 180-262 (280)
8 2a9h_A Voltage-gated potassium 99.8 2.9E-21 1E-25 179.8 10.3 127 443-599 15-141 (155)
9 2ih3_C Voltage-gated potassium 99.8 6.6E-19 2.3E-23 157.8 12.4 116 472-599 3-118 (122)
10 1ors_C Potassium channel; volt 99.8 1.3E-18 4.3E-23 158.3 12.6 124 353-508 6-129 (132)
11 2a9h_A Voltage-gated potassium 99.6 5.9E-17 2E-21 150.7 4.5 80 138-219 63-142 (155)
12 4h33_A LMO2059 protein; bilaye 99.6 4.1E-16 1.4E-20 142.5 7.0 81 510-597 18-98 (137)
13 3eff_K Voltage-gated potassium 99.6 2.5E-15 8.5E-20 138.1 11.7 95 505-601 5-99 (139)
14 2kyh_A KVAP, voltage-gated pot 99.6 1.7E-15 5.7E-20 139.5 10.3 133 332-503 7-139 (147)
15 2k1e_A Water soluble analogue 99.6 6E-16 2.1E-20 134.2 6.9 80 138-219 19-98 (103)
16 2k1e_A Water soluble analogue 99.6 9.7E-16 3.3E-20 132.9 7.3 91 506-598 6-96 (103)
17 2ih3_C Voltage-gated potassium 99.6 5.8E-16 2E-20 138.6 6.0 80 138-219 40-119 (122)
18 4h33_A LMO2059 protein; bilaye 99.6 3.1E-16 1.1E-20 143.2 2.8 74 138-218 27-100 (137)
19 3eff_K Voltage-gated potassium 99.5 2.8E-15 9.6E-20 137.8 5.0 82 138-221 19-100 (139)
20 2q67_A Potassium channel prote 99.5 1.2E-13 4.2E-18 121.7 12.1 57 541-597 48-104 (114)
21 3pjs_K KCSA, voltage-gated pot 99.5 4.5E-15 1.5E-19 140.5 1.3 83 137-221 45-127 (166)
22 3vou_A ION transport 2 domain 99.5 1.8E-13 6.3E-18 126.9 11.3 74 512-594 30-104 (148)
23 3ldc_A Calcium-gated potassium 99.5 2.7E-13 9.2E-18 112.1 11.0 76 511-595 6-81 (82)
24 3ouf_A Potassium channel prote 99.4 8.5E-13 2.9E-17 112.8 11.5 57 541-597 31-87 (97)
25 1orq_C Potassium channel; volt 99.4 1.6E-13 5.4E-18 136.9 5.2 77 138-216 144-220 (223)
26 2r9r_B Paddle chimera voltage 99.4 2E-13 6.7E-18 152.2 6.2 81 140-222 356-436 (514)
27 2q67_A Potassium channel prote 99.3 3.6E-13 1.2E-17 118.7 3.6 72 138-217 34-105 (114)
28 3ldc_A Calcium-gated potassium 99.3 8.3E-13 2.8E-17 109.1 4.5 67 139-214 14-81 (82)
29 3pjs_K KCSA, voltage-gated pot 99.3 1.7E-14 5.9E-19 136.4 -7.0 87 511-599 38-124 (166)
30 3ouf_A Potassium channel prote 99.3 9.9E-13 3.4E-17 112.3 4.4 71 138-216 17-87 (97)
31 1xl4_A Inward rectifier potass 99.3 7.7E-13 2.6E-17 136.6 3.9 78 138-217 61-138 (301)
32 1p7b_A Integral membrane chann 99.3 1E-12 3.6E-17 136.9 4.3 78 140-218 76-153 (333)
33 3beh_A MLL3241 protein; transm 99.3 1.1E-12 3.8E-17 140.2 4.2 81 138-220 140-220 (355)
34 1xl4_A Inward rectifier potass 99.3 9.3E-12 3.2E-16 128.4 10.9 84 512-597 54-137 (301)
35 1p7b_A Integral membrane chann 99.3 8.7E-12 3E-16 130.0 10.3 94 503-597 58-151 (333)
36 3vou_A ION transport 2 domain 99.3 1.2E-12 4.1E-17 121.4 3.1 70 138-215 37-106 (148)
37 2qks_A KIR3.1-prokaryotic KIR 99.3 2.4E-11 8.4E-16 126.2 13.3 79 515-597 53-133 (321)
38 2qks_A KIR3.1-prokaryotic KIR 99.3 1.1E-12 3.6E-17 136.5 3.0 79 138-220 57-137 (321)
39 3um7_A Potassium channel subfa 99.1 3.8E-10 1.3E-14 115.8 14.4 60 541-600 114-173 (309)
40 3kvt_A Potassium channel prote 99.1 1.2E-11 4.2E-16 108.4 2.3 49 1-50 66-114 (115)
41 3sya_A G protein-activated inw 99.1 6.1E-10 2.1E-14 115.7 11.6 90 508-597 46-148 (340)
42 3sya_A G protein-activated inw 99.1 8E-11 2.8E-15 122.3 5.0 63 158-220 88-152 (340)
43 1lnq_A MTHK channels, potassiu 99.0 3.8E-11 1.3E-15 127.3 0.3 73 138-219 30-103 (336)
44 3spc_A Inward-rectifier K+ cha 99.0 1.5E-09 5.1E-14 112.9 11.2 89 509-597 49-151 (343)
45 4gx0_A TRKA domain protein; me 99.0 1.2E-09 4E-14 124.1 10.6 83 508-597 20-107 (565)
46 3ukm_A Potassium channel subfa 99.0 2.3E-09 7.9E-14 108.4 11.4 59 540-598 91-149 (280)
47 3rvy_A ION transport protein; 99.0 1E-10 3.4E-15 121.0 1.0 83 140-224 161-249 (285)
48 3spc_A Inward-rectifier K+ cha 98.9 2.8E-10 9.6E-15 118.4 4.2 61 158-218 91-153 (343)
49 1lnq_A MTHK channels, potassiu 98.9 2.3E-11 8E-16 128.9 -6.2 73 518-599 29-102 (336)
50 4f4l_A ION transport protein; 98.8 1.9E-09 6.4E-14 94.4 5.0 95 504-600 2-102 (112)
51 1nn7_A Potassium channel KV4.2 98.8 1E-09 3.4E-14 94.8 2.9 44 1-45 60-103 (105)
52 4gx0_A TRKA domain protein; me 98.8 3.7E-09 1.3E-13 120.0 6.6 57 160-216 50-107 (565)
53 1s1g_A Potassium voltage-gated 98.7 3.5E-09 1.2E-13 93.9 2.7 45 1-46 73-117 (124)
54 4dxw_A Navrh, ION transport pr 97.6 1.8E-05 6E-10 78.6 2.7 78 138-217 144-226 (229)
55 1t1d_A Protein (potassium chan 97.6 8.8E-06 3E-10 69.1 0.4 32 2-34 64-95 (100)
56 3drx_A BTB/POZ domain-containi 96.1 0.001 3.5E-08 63.3 0.4 38 1-41 76-113 (202)
57 3drz_A BTB/POZ domain-containi 96.1 0.0013 4.5E-08 56.5 0.8 27 1-27 70-96 (107)
58 3kg2_A Glutamate receptor 2; I 96.0 0.0013 4.5E-08 77.6 0.8 126 61-216 472-617 (823)
59 2lcm_A Voltage-dependent N-typ 93.6 0.042 1.4E-06 34.5 2.4 26 470-495 3-28 (28)
60 4f4l_A ION transport protein; 92.2 0.065 2.2E-06 46.2 2.5 64 157-220 34-103 (112)
61 3kg2_A Glutamate receptor 2; I 91.7 0.16 5.4E-06 59.6 6.0 55 542-597 563-617 (823)
62 1qg9_A Protein (sodium channel 82.9 0.36 1.2E-05 29.5 0.8 21 414-434 3-23 (26)
63 2kyh_A KVAP, voltage-gated pot 76.0 13 0.00046 33.1 9.3 19 442-460 53-71 (147)
64 1ors_C Potassium channel; volt 68.9 28 0.00095 30.3 9.5 57 440-496 36-114 (132)
65 2nz0_B Potassium voltage-gated 35.6 9.5 0.00033 33.8 0.6 15 31-45 124-138 (140)
66 3pjz_A Potassium uptake protei 29.9 51 0.0018 35.7 5.3 45 542-586 423-474 (494)
67 3odu_A C-X-C chemokine recepto 27.0 2.1E+02 0.0073 30.0 9.8 19 355-373 55-73 (502)
68 2knc_B Integrin beta-3; transm 27.0 1.9E+02 0.0066 22.6 6.8 21 576-596 16-36 (79)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=100.00 E-value=2.8e-43 Score=392.81 Aligned_cols=245 Identities=47% Similarity=0.853 Sum_probs=199.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccc----cccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy13136 353 KIIGVVSVFFICISILSFCLKTHPDMRVPVIHNIT----VRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMR 428 (695)
Q Consensus 353 ~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk 428 (695)
++|+++++++|++|+++++++|+|+++......-. ....++. . ...........++.++|++|+++|++|+++|
T Consensus 182 ~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR 259 (514)
T 2r9r_B 182 RIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQS-T-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVR 259 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHH-H-HSSCCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc-c-ccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888887764421000000 0000000 0 0001223367789999999999999999999
Q ss_pred HhcccccccccccccchhhhhhHhHHHHHHHHHhhhhc----cchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy13136 429 FISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASH----LENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRAS 504 (695)
Q Consensus 429 ~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~----~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s 504 (695)
+++++.+++|++++||++|+++++|+++.++....... ......++++|++|++|++|++|+.++++.+..++..+
T Consensus 260 ~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s 339 (514)
T 2r9r_B 260 FFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKAS 339 (514)
T ss_dssp HHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998876532211 11156889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHH
Q psy13136 505 AKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584 (695)
Q Consensus 505 ~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~ 584 (695)
.+.+..+++++++++++||+++|++|+ .+++.+|.+|++|+||+++||||+||||++|.|..|++++++++++|++++
T Consensus 340 ~~~l~~ll~~l~i~~~if~~~~~~~e~--~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l 417 (514)
T 2r9r_B 340 MRELGLLIFFLFIGVILFSSAVYFAEA--DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTI 417 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeec--cCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHH
Confidence 999999998889999999999998886 456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13136 585 ALPVPVIVSNFAMYYSH 601 (695)
Q Consensus 585 ~l~ia~i~~~f~~~~~~ 601 (695)
|+++|+|+++|+..+++
T Consensus 418 ~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 418 ALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987753
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=100.00 E-value=2.1e-33 Score=292.21 Aligned_cols=227 Identities=14% Similarity=0.222 Sum_probs=191.6
Q ss_pred hhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHH
Q psy13136 333 QKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFY 412 (695)
Q Consensus 333 ~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 412 (695)
+.+|++++++++++ +|+.+++++|++|++.+++++++... .....++.+
T Consensus 17 ~~~r~~~~~i~~~~-------~f~~~i~~li~l~~i~~~~~~~~~~~------------------------~~~~~~l~~ 65 (285)
T 3rvy_A 17 SHMYLRITNIVESS-------FFTKFIIYLIVLNGITMGLETSKTFM------------------------QSFGVYTTL 65 (285)
T ss_dssp --CHHHHHHHHTSH-------HHHHHHHHHHHHHHHHHHHTTCTTHH------------------------HHSHHHHHH
T ss_pred hHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhcCcccc------------------------hHHHHHHHH
Confidence 44899999999986 99999999999999999999976432 235678999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhh
Q psy13136 413 IECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSS 492 (695)
Q Consensus 413 ~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~ 492 (695)
+|++++++|++|+++|+++++ ++|++++||++|+++++++++... ..++++|++|++|++|++|+.+
T Consensus 66 ~e~~~~~iF~~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~~-----------~~~~~lr~~RilR~lrl~~~~~ 132 (285)
T 3rvy_A 66 FNQIVITIFTIEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPTS-----------SGFEILRVLRVLRLFRLVTAVP 132 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCSS-----------SSCTHHHHHGGGGGGHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHccc-----------chHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 589999999999999999875421 2356789999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhccccc-CCC-ccchhh-
Q psy13136 493 GLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYG-DMA-PKTYVG- 569 (695)
Q Consensus 493 ~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyG-Di~-p~t~~g- 569 (695)
.++.+..++..+.+.+..+++++++++++||++.+..++. ..+.+|+|+++|+||+++|+||+||| |+. |.+..+
T Consensus 133 ~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~--~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~ 210 (285)
T 3rvy_A 133 QMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE--RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYP 210 (285)
T ss_dssp THHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTT--TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC
Confidence 9999999999999999999999999999999987777762 33457999999999999999999999 985 887654
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 570 ---MFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQAR 605 (695)
Q Consensus 570 ---~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~ 605 (695)
++|+++++++|++++|+++|++.++|++..++++++
T Consensus 211 ~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 211 YAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999876654433
No 3
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.98 E-value=3e-31 Score=265.90 Aligned_cols=217 Identities=18% Similarity=0.337 Sum_probs=177.7
Q ss_pred hhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHH
Q psy13136 341 SLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAW 420 (695)
Q Consensus 341 ~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 420 (695)
+++++| +|+.+++++|++|++.+++++++..+ ......+.++|.+++++
T Consensus 3 ~~~~~~-------~f~~~i~~lil~~~~~~~~~~~~~~~------------------------~~~~~~l~~~d~~~~~i 51 (223)
T 1orq_C 3 DVMEHP-------LVELGVSYAALLSVIVVVVECTMQLS------------------------GEYLVRLYLVDLILVII 51 (223)
T ss_dssp TTCCSH-------HHHTHHHHHHHHHHHHHHHHHHHHHT------------------------TCTTTHHHHHHHHHHHH
T ss_pred hHHhCc-------hHHHHHHHHHHHHHHHHHHHHhcccC------------------------hhhhhHHHHHHHHHHHH
Confidence 456665 89999999999999999999865432 33678899999999999
Q ss_pred HHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhh-hhhHHHHH
Q psy13136 421 FTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHS-SGLKILMQ 499 (695)
Q Consensus 421 F~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~-~~l~~l~~ 499 (695)
|++|+++|+++++++++|+++ |++|+++++|+++...... . ......+|++|++|++|++|+.+.. +..+.+..
T Consensus 52 F~~e~~lr~~~~~~~~~y~~~--~iiDllailP~~~~~~~~~-~--~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~ 126 (223)
T 1orq_C 52 LWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEG-H--LAGLGLFRLVRLLRFLRILLIISRGSKFLSAIAD 126 (223)
T ss_dssp HHHHHHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHHHHHHH-H--HHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHH--hHHHHHHHHHHHHHHHHhc-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999987664211 1 1113456777777777777777633 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHH
Q psy13136 500 TFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALA 579 (695)
Q Consensus 500 ~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~ 579 (695)
.+.. ..+..++++++++++++|++++..|+. ++++++.+|.+|+||+++|+||+||||++|.|+.||+++++++++
T Consensus 127 ~~~~--~~l~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~ 202 (223)
T 1orq_C 127 AADK--IRFYHLFGAVMLTVLYGAFAIYIVEYP--DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLT 202 (223)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSS--STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhC--CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHH
Confidence 4433 346667777888888999999999873 456678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13136 580 GVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 580 g~~~~~l~ia~i~~~f~~ 597 (695)
|+.++++++|.+.+.+++
T Consensus 203 G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 203 GISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=4.2e-30 Score=276.06 Aligned_cols=211 Identities=20% Similarity=0.301 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13136 353 KIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISS 432 (695)
Q Consensus 353 ~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~ 432 (695)
++|+++++++|++|+++++++|+|+... .....+++++.++.++|++|+++|+++.
T Consensus 8 ~~f~~~~~~~i~ls~~~~~~~t~~~~~~------------------------~~~~~~~~~~~~~~~~f~~e~~~r~~~~ 63 (355)
T 3beh_A 8 RIYAPLNAVLAAPGLLAVAALTIPDMSG------------------------RSRLALAALLAVIWGAYLLQLAATLLKR 63 (355)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHTSSSCCH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhh------------------------hHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 3789999999999999999999876541 2345678888888889999999999999
Q ss_pred cccccccccccchhhhhhH-hHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13136 433 PRKCEFIKASVNVIDYIAT-LSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLL 511 (695)
Q Consensus 433 ~~~~~y~~~~~n~~D~i~v-i~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~ 511 (695)
+.++.|++++||++|++++ +|++..+. . .++.+|++|++|++|+.|+.+.++.+...+..+.+.+..+
T Consensus 64 ~~~~~~~~~~~~i~Dl~~i~~p~~~~~~-~----------~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~ 132 (355)
T 3beh_A 64 RAGVVRDRTPKIAIDVLAVLVPLAAFLL-D----------GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGV 132 (355)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHHHHHS-C----------CSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHH
T ss_pred cccceeccCcchHHHHHHHHHHHHHHHh-c----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999 57654321 1 1245678888888888899999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 512 VFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVI 591 (695)
Q Consensus 512 ~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i 591 (695)
+++++++++++|+++|.+|+. .++++|.+|++|+||+++||||+||||++|.|+.|++++++++++|++++++++|++
T Consensus 133 ~~~~~~~~~~~a~~~~~~e~~--~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i 210 (355)
T 3beh_A 133 TTLFGVVLFAVALAAYVIERD--IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGIL 210 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999973 334568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy13136 592 VSNFAMYYS 600 (695)
Q Consensus 592 ~~~f~~~~~ 600 (695)
.+++.+..+
T Consensus 211 ~~~~~~~~~ 219 (355)
T 3beh_A 211 ATGFYQEVR 219 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999986543
No 5
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.96 E-value=3.1e-29 Score=252.28 Aligned_cols=217 Identities=16% Similarity=0.236 Sum_probs=172.3
Q ss_pred HHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHH
Q psy13136 338 QLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLC 417 (695)
Q Consensus 338 ~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 417 (695)
+++++++++ +|+.+++++|++|++.+++++++.. +.....+.++|+++
T Consensus 4 ~~~~iv~~~-------~f~~~i~~~I~ln~i~l~~~~~~~~-------------------------~~~~~~l~~~e~~~ 51 (229)
T 4dxw_A 4 FFSSLKDNR-------IFQFTVVSIIILNAVLIGATTYELD-------------------------PLFLETIHLLDYGI 51 (229)
T ss_dssp SSTTTTTCH-------HHHHHHHHHHHHHHHSTTTCCSSSC-------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCc-------hHHHHHHHHHHHHHHHHHHccCCCC-------------------------hHHHHHHHHHHHHH
Confidence 355666664 9999999999999999999997532 23577899999999
Q ss_pred HHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy13136 418 NAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKIL 497 (695)
Q Consensus 418 ~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l 497 (695)
+++|++|+++|+++.+.+++|++++||++|++++++++++... ...++++|++|++|++|+.|+.++++.+
T Consensus 52 ~~iF~~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~---------~~~~~~lr~~RilR~lrl~~~~~~l~~l 122 (229)
T 4dxw_A 52 TIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPN---------NSSFLVLRLLRIFRVLRLISVIPELKQI 122 (229)
T ss_dssp HHHHHHHHHHHHHC---------CHHHHHHHHHHHHTTCC-----------------CCTTHHHHHHTTHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCc---------cHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999878999999999999999988765421 1345677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCc----cchhhH-HH
Q psy13136 498 MQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAP----KTYVGM-FV 572 (695)
Q Consensus 498 ~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p----~t~~g~-~~ 572 (695)
..++.++.+.+.++.+++++++++||++.+...++ ..+.+|+++++|+||+++++||+||+|+.. .++.+. +|
T Consensus 123 ~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~--~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f 200 (229)
T 4dxw_A 123 IEAILESVRRVFFVSLLLFIILYIYATMGAILFGN--DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYF 200 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHH
Confidence 99999999999999999999999999987776663 334689999999999999999999999732 223444 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 573 GALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 573 ~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
++++++++++++|+++|++.++|++
T Consensus 201 ~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 201 FSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677799999999999999994
No 6
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=208.58 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhH------HHHHHHHHHHHHHHHHHH
Q psy13136 515 LVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGM------FVGALCALAGVLTIALPV 588 (695)
Q Consensus 515 l~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~------~~~~~~~l~g~~~~~l~i 588 (695)
+++++++.+.+++..|+ ++|.||+||+++|+|||||||++|.+..|+ +++++++++|+.++++++
T Consensus 206 ~~~~l~~ga~~~~~~E~---------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~ 276 (309)
T 3um7_A 206 CLLFVLTPTFVFCYMED---------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL 276 (309)
T ss_dssp HHHHTHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677777775 689999999999999999999999999987 599999999999999999
Q ss_pred HHHHHHHHHH
Q psy13136 589 PVIVSNFAMY 598 (695)
Q Consensus 589 a~i~~~f~~~ 598 (695)
+.+.+.+...
T Consensus 277 ~~i~~~~~~~ 286 (309)
T 3um7_A 277 TTIGNWLRVV 286 (309)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9887777643
No 7
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=198.31 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchh-------hHHHHHHHHHHHHHHHH
Q psy13136 513 FFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYV-------GMFVGALCALAGVLTIA 585 (695)
Q Consensus 513 ~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~-------g~~~~~~~~l~g~~~~~ 585 (695)
+++++++++.+.+++..|+. ++|+||+||+++|+|||||||++|.+.. +|+++++++++|+.+++
T Consensus 180 ~~~~~~~~~ga~~~~~~E~~--------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~ 251 (280)
T 3ukm_A 180 VTVSCFFFIPAAVFSVLEDD--------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAML 251 (280)
T ss_dssp HHHHHHTHHHHHHHHHHSSS--------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcC--------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 33444555666677777731 6899999999999999999999999985 59999999999999999
Q ss_pred HHHHHHHHHHH
Q psy13136 586 LPVPVIVSNFA 596 (695)
Q Consensus 586 l~ia~i~~~f~ 596 (695)
++++.+.+...
T Consensus 252 ~~~~~i~~~~~ 262 (280)
T 3ukm_A 252 VVLETFCELHE 262 (280)
T ss_dssp HHHHHHHTSHH
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.84 E-value=2.9e-21 Score=179.76 Aligned_cols=127 Identities=28% Similarity=0.402 Sum_probs=79.6
Q ss_pred cchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 443 VNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIF 522 (695)
Q Consensus 443 ~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~if 522 (695)
++++|+++++|. +|.+|++|++|++ +.|+...++ . +.+...+++++++++++
T Consensus 15 ~~~~dli~~lp~------------------lr~lRllRi~ril-l~r~~~~l~-------~--~~~~~~~~~~~~~i~~~ 66 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------------MLSGLLARLVKLL-LGRHGSALH-------W--RAAGAATVLLVIVLLAG 66 (155)
T ss_dssp --------------------------------------------------CCH-------H--HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH------------------HHHHHHHHHHHHH-HHHHHHHHH-------H--HHHHHHHHHHHHHHHHH
Confidence 478999988875 4566666666666 555522222 1 22334444556667788
Q ss_pred HHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 523 ASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599 (695)
Q Consensus 523 a~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~ 599 (695)
|+++|++|+ ..++++|.+|.+|+||+++|+||+||||++|.|+.||+++++++++|+++++++++.+.+.+.+..
T Consensus 67 a~~~~~~E~--~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 67 SYLAVLAER--GAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp HHHHHHHHT--TSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhc--cCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 345678999999999999999999999999999999999999999999999999999999998543
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.79 E-value=6.6e-19 Score=157.76 Aligned_cols=116 Identities=29% Similarity=0.429 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHH
Q psy13136 472 ILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWAL 551 (695)
Q Consensus 472 ~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~ 551 (695)
.+|++|++|++|++ +.|+...+ .. ..+...++.+++++++++++++..|+. .+++++.+|.+|+||++
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~~~~l-------~~--~~~~~~~~~~~~~~~~~a~~~~~~E~~--~~~~~~~~~~~a~y~~~ 70 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRHGSAL-------HW--RAAGAATVLLVIVLLAGSYLAVLAERG--APGAQLITYPRALWWAC 70 (122)
T ss_dssp ----------------------C-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHTT--STTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhHHHH-------HH--HHHHHHHHHHHHHHHHHHHhhheeeec--CCCCccCccccchhhee
Confidence 45666667777766 55552111 11 123334445556667788889999973 35677899999999999
Q ss_pred hhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 552 VTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599 (695)
Q Consensus 552 ~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~ 599 (695)
+|+||+||||++|.|..||+++++++++|+.+++++++.+.+.+.+..
T Consensus 71 ~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 71 ETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp HHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998543
No 10
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.78 E-value=1.3e-18 Score=158.31 Aligned_cols=124 Identities=10% Similarity=0.175 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13136 353 KIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISS 432 (695)
Q Consensus 353 ~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~ 432 (695)
++|+++++++|++|++.+++|++++.. ......+.++|++++++|++|+++|++++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~------------------------~~~~~~l~~~d~~~~~iFt~E~~lRl~~~ 61 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLS------------------------GEYLVRLYLVDLILVIILWADYAYRAYKS 61 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCC------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 589999999999999999999987654 23567899999999999999999999999
Q ss_pred cccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy13136 433 PRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKEL 508 (695)
Q Consensus 433 ~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l 508 (695)
+++++|++ ||++|+++++|+++.+..+ +....+|++|++|++|++|+.|+.++++.+..++.++.+++
T Consensus 62 ~~~~~y~~--~niiDllailp~~~~~~~~------~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l 129 (132)
T 1ors_C 62 GDPAGYVK--KTLYEIPALVPAGLLALIE------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp TSTTTTTT--TCGGGTGGGSCHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999887762 24567889999999999999999999999999999998875
No 11
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.64 E-value=5.9e-17 Score=150.69 Aligned_cols=80 Identities=33% Similarity=0.503 Sum_probs=72.3
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++.++|++|+.. +++.|.++++|+||+++|||||||||++|.|..||++++++++.|+++++++++.+.+.|.+.
T Consensus 63 i~~~a~~~~~~E~~~--~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 63 LLAGSYLAVLAERGA--PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHHHTTS--SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccC--CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999854 567899999999999999999999999999999999999999999999999999999999875
Q ss_pred HH
Q psy13136 218 YS 219 (695)
Q Consensus 218 ~~ 219 (695)
.+
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 12
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.62 E-value=4.1e-16 Score=142.45 Aligned_cols=81 Identities=33% Similarity=0.640 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy13136 510 LLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 589 (695)
Q Consensus 510 ~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia 589 (695)
.+++++++++++++..+++.|. ++++|.+|+||+++|+|||||||++|.|..||+++++++++|+++++++++
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~e~-------~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~ 90 (137)
T 4h33_A 18 RFLMIFVLLVIIIPVPMVFIEP-------EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITS 90 (137)
T ss_dssp HHHHHHHHHHHHTHHHHHHHCS-------SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777777764 467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy13136 590 VIVSNFAM 597 (695)
Q Consensus 590 ~i~~~f~~ 597 (695)
.+.+.+.+
T Consensus 91 ~i~~~~~~ 98 (137)
T 4h33_A 91 TITNFFRC 98 (137)
T ss_dssp HHHTTTTT
T ss_pred HHHHHHHH
Confidence 99988874
No 13
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.61 E-value=2.5e-15 Score=138.11 Aligned_cols=95 Identities=28% Similarity=0.454 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHH
Q psy13136 505 AKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI 584 (695)
Q Consensus 505 ~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~ 584 (695)
.+.+...+++++++++++|++++.+|+. .+++.+.+|.+|+||+++|+|||||||++|.|..||+++++++++|++++
T Consensus 5 ~r~~~~~~~~~~~~~~~~a~~~~~~e~~--~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~ 82 (139)
T 3eff_K 5 WRAAGAATVLLVIVLLAGSYLAVLAERG--APGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSF 82 (139)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSS--CTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHH
Confidence 4456667777788888999999999983 35667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13136 585 ALPVPVIVSNFAMYYSH 601 (695)
Q Consensus 585 ~l~ia~i~~~f~~~~~~ 601 (695)
+++++.+.+.+.+..++
T Consensus 83 ~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 83 GLVTAALATWFVGREQE 99 (139)
T ss_dssp HHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888765443
No 14
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.61 E-value=1.7e-15 Score=139.48 Aligned_cols=133 Identities=9% Similarity=0.166 Sum_probs=108.9
Q ss_pred hhhhhhHHhhhccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHH
Q psy13136 332 WQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFF 411 (695)
Q Consensus 332 ~~~~r~~~~~~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 411 (695)
++++|+++|+++++| .|+.+++++|++|++.+.+++.+... ......+.
T Consensus 7 ~~~~~~~~~~~~e~~-------~f~~~i~~lil~sv~~v~~et~~~i~------------------------~~~~~~~~ 55 (147)
T 2kyh_A 7 LGGRVRNIGDVMEHP-------LVELGVSYAALLSVIVVVVEYTMQLS------------------------GEYLVRLY 55 (147)
T ss_dssp CSHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHCCCC------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-------hHHHHHHHHHHHHHHHHHHHHhHhhc------------------------hhHHHHHH
Confidence 456889999999997 89999999999999999999986543 22467899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhh
Q psy13136 412 YIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHS 491 (695)
Q Consensus 412 ~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~ 491 (695)
.+|.+++++|++|+++|+++++++++|+++ |++|+++++|++..+... .....+|++|++|++|++|+.|+.
T Consensus 56 ~id~~~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~------~~lr~lRvlRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 56 LVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE------GHLAGLGLFRLVRLLRFLRILLII 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH------HHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 999999999998776542 134667777777777777777776
Q ss_pred hhhHHHHHHHHH
Q psy13136 492 SGLKILMQTFRA 503 (695)
Q Consensus 492 ~~l~~l~~~l~~ 503 (695)
...+.+..++..
T Consensus 128 ~~~~~l~~al~~ 139 (147)
T 2kyh_A 128 SRGSKFLSAIAD 139 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555544
No 15
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.61 E-value=6e-16 Score=134.24 Aligned_cols=80 Identities=31% Similarity=0.417 Sum_probs=71.8
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++.++|+.|+.. +++.+.++.+|+||+++|||||||||++|.|..||++++++++.|+.+++++++.+.+.+.+.
T Consensus 19 ~~~~a~~~~~~E~~~--~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 19 LEEASKKAVEAERGA--PGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp HHHHHHHHHHHHTTS--TTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred HHHHHHhhhhhccCC--CCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888999864 457789999999999999999999999999999999999999999999999999999998875
Q ss_pred HH
Q psy13136 218 YS 219 (695)
Q Consensus 218 ~~ 219 (695)
.+
T Consensus 97 ~~ 98 (103)
T 2k1e_A 97 EE 98 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.60 E-value=9.7e-16 Score=132.93 Aligned_cols=91 Identities=30% Similarity=0.336 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHH
Q psy13136 506 KELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIA 585 (695)
Q Consensus 506 ~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~ 585 (695)
+.+...+++++++++++++++++.|+. .+++++.+|.+|+||+++|+||+||||++|.|..||+++++++++|+.+++
T Consensus 6 r~~l~~~~~~~~~~~~~a~~~~~~E~~--~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~ 83 (103)
T 2k1e_A 6 REAQKAEEELQKVLEEASKKAVEAERG--APGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFA 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--STTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC--CCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 344555666777778899999999984 356678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy13136 586 LPVPVIVSNFAMY 598 (695)
Q Consensus 586 l~ia~i~~~f~~~ 598 (695)
++++.+.+.+.+.
T Consensus 84 ~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 84 LVTAALATDFVRR 96 (103)
T ss_dssp HTHHHHHTTGGGH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888843
No 17
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.60 E-value=5.8e-16 Score=138.57 Aligned_cols=80 Identities=31% Similarity=0.496 Sum_probs=71.8
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++.++|+.|++. +++.+.++++|+||+++|||||||||++|.|..||++++++++.|+.+++++++.+.+.+.+.
T Consensus 40 ~~~~a~~~~~~E~~~--~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 40 LLAGSYLAVLAERGA--PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeecC--CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999854 557789999999999999999999999999999999999999999999999999999988875
Q ss_pred HH
Q psy13136 218 YS 219 (695)
Q Consensus 218 ~~ 219 (695)
.+
T Consensus 118 ~~ 119 (122)
T 2ih3_C 118 EQ 119 (122)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 18
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.58 E-value=3.1e-16 Score=143.24 Aligned_cols=74 Identities=34% Similarity=0.584 Sum_probs=65.8
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++..+|+.|. .+.++++|+||+++|||||||||++|.|..||++++++++.|+.+++++++.+.+.|.+.
T Consensus 27 ~~~~~~~~~~~e~-------~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 27 VIIIPVPMVFIEP-------EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp HHHTHHHHHHHCS-------SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888884 357899999999999999999999999999999999999999999999999999988754
Q ss_pred H
Q psy13136 218 Y 218 (695)
Q Consensus 218 ~ 218 (695)
.
T Consensus 100 ~ 100 (137)
T 4h33_A 100 K 100 (137)
T ss_dssp T
T ss_pred H
Confidence 3
No 19
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.54 E-value=2.8e-15 Score=137.76 Aligned_cols=82 Identities=30% Similarity=0.517 Sum_probs=72.7
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++.++|+.|+.. +++.+.++.+|+||+++|||||||||++|.|..||++++++++.|+++++++++.+.+.+.+.
T Consensus 19 ~~~~a~~~~~~e~~~--~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 19 LLAGSYLAVLAERGA--PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp HHHHHHHHHHTTSSC--TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHHHhcCC--CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999854 456789999999999999999999999999999999999999999999999999999988776
Q ss_pred HHHH
Q psy13136 218 YSHT 221 (695)
Q Consensus 218 ~~~~ 221 (695)
.++.
T Consensus 97 ~~~~ 100 (139)
T 3eff_K 97 EQER 100 (139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 20
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.50 E-value=1.2e-13 Score=121.73 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=54.4
Q ss_pred CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
.+|.+|+||+++|+||+||||++|.|..||+++++++++|+.++++.++.+.+.++.
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999988863
No 21
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.48 E-value=4.5e-15 Score=140.47 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=72.8
Q ss_pred cchhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHH
Q psy13136 137 SVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 137 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~ 216 (695)
.+++++.++|+.|++. +++.+.++.+|+||+++|+|||||||++|.|..||++++++++.|+++++++++.+.+.+.+
T Consensus 45 ~~~~~a~~~~~~e~~~--~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 45 VLLAGSYLAVLAERGA--PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp TTTTTSSSSSSTTSSS--TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred HHHHHHHHHHHHhcCC--CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678888999854 45678999999999999999999999999999999999999999999999999999998886
Q ss_pred hHHHH
Q psy13136 217 YYSHT 221 (695)
Q Consensus 217 ~~~~~ 221 (695)
...+.
T Consensus 123 ~~~~~ 127 (166)
T 3pjs_K 123 QEQQQ 127 (166)
T ss_dssp SHHHH
T ss_pred HHHHH
Confidence 55443
No 22
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.47 E-value=1.8e-13 Score=126.91 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHh-hhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13136 512 VFFLVLGIVIFASLVYY-AERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPV 590 (695)
Q Consensus 512 ~~ll~l~~~ifa~l~~~-~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~ 590 (695)
+++++++++++++++|. .|+ ++|.+|+||+++|+||+||||++|.|..|++++++++++|+.+++++++.
T Consensus 30 ~~~~~~~~~~~g~~~~~~~e~---------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~ 100 (148)
T 3vou_A 30 LFVLTFLTLTSGTIFYSTVEG---------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHK 100 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC---------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554 443 58999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy13136 591 IVSN 594 (695)
Q Consensus 591 i~~~ 594 (695)
+...
T Consensus 101 ~~~~ 104 (148)
T 3vou_A 101 LAVN 104 (148)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8873
No 23
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.47 E-value=2.7e-13 Score=112.08 Aligned_cols=76 Identities=28% Similarity=0.530 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13136 511 LVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPV 590 (695)
Q Consensus 511 ~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~ 590 (695)
++++++..+.++++.++..|+ ++|.+|+||+++|+||+||||++|.|..||++++++++.|+.++++.++.
T Consensus 6 ~~~l~~~~~~~g~~~~~~~e~---------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~ 76 (82)
T 3ldc_A 6 ILLLVLAVIIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVER 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556667777778887 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy13136 591 IVSNF 595 (695)
Q Consensus 591 i~~~f 595 (695)
+.+.+
T Consensus 77 i~~~l 81 (82)
T 3ldc_A 77 LLEFL 81 (82)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 24
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.42 E-value=8.5e-13 Score=112.75 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=54.6
Q ss_pred CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
.+|.+|+||+++|+||+||||++|.|..||+++++++++|+.+++++++.+...++.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 689999999999999999999999999999999999999999999999999988873
No 25
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.39 E-value=1.6e-13 Score=136.87 Aligned_cols=77 Identities=34% Similarity=0.615 Sum_probs=69.7
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHH
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~ 216 (695)
+++++.++|+.|++. +++.+.++++|+||+++|||||||||++|.|..||++++++++.|+.+++++++.+.+.+.+
T Consensus 144 ~~~~~~~~~~~e~~~--~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 144 VLYGAFAIYIVEYPD--PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHTTSSS--TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999854 45678999999999999999999999999999999999999999999999999999998876
No 26
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.38 E-value=2e-13 Score=152.17 Aligned_cols=81 Identities=59% Similarity=1.008 Sum_probs=73.8
Q ss_pred hhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHH
Q psy13136 140 PCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYS 219 (695)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~ 219 (695)
++|.++|+.|+.. +++.|.++++|+||+++|||||||||++|.|..||+++++++++|++++++++++|+++|++.++
T Consensus 356 if~~~~~~~e~~~--~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 356 LFSSAVYFAEADE--RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHTTC--TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHhhhheeeccC--CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999743 56789999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q psy13136 220 HTQ 222 (695)
Q Consensus 220 ~~~ 222 (695)
+.+
T Consensus 434 ~~~ 436 (514)
T 2r9r_B 434 RET 436 (514)
T ss_dssp HHC
T ss_pred HHH
Confidence 543
No 27
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.34 E-value=3.6e-13 Score=118.74 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=62.2
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
++++|+++|..+.+ .++.+|+||+++|+|||||||++|.|..||++++++++.|+.++++.++.+.+.++..
T Consensus 34 ~~~~g~~~~~~~e~--------~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 34 TLISGTIFYSTVEG--------LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp HHHHHHHHHHHHSC--------CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcC--------CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777776531 4789999999999999999999999999999999999999999999999999887543
No 28
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.32 E-value=8.3e-13 Score=109.12 Aligned_cols=67 Identities=30% Similarity=0.565 Sum_probs=58.0
Q ss_pred hhhhhHhh-hhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhh
Q psy13136 139 FPCVSLVY-YAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 214 (695)
Q Consensus 139 ~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f 214 (695)
+.+++++| +.|+ .++.+|+||+++|+|||||||++|.|..||++++++++.|+.++++.++.+.+.+
T Consensus 14 ~~~g~~~~~~~e~---------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 14 IIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555 6774 3789999999999999999999999999999999999999999999999887654
No 29
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.31 E-value=1.7e-14 Score=136.41 Aligned_cols=87 Identities=31% Similarity=0.511 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13136 511 LVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPV 590 (695)
Q Consensus 511 ~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~ 590 (695)
+++++++++++++++++..|.. .++..+.+|.+|+||+++|+|||||||++|.|..|++++++++++|+++++++++.
T Consensus 38 ~~~~~~~~~~~~a~~~~~~e~~--~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~ 115 (166)
T 3pjs_K 38 ATVLLVIVLLAGSYLAVLAERG--APGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 115 (166)
T ss_dssp TSSSSTTTTTTTSSSSSSTTSS--STTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677778888873 35567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy13136 591 IVSNFAMYY 599 (695)
Q Consensus 591 i~~~f~~~~ 599 (695)
+.+.+.+..
T Consensus 116 i~~~~~~~~ 124 (166)
T 3pjs_K 116 LATWFVGQE 124 (166)
T ss_dssp SSSSSSSSH
T ss_pred HHHHHHHHH
Confidence 988877543
No 30
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.30 E-value=9.9e-13 Score=112.32 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=61.2
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHH
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~ 216 (695)
+++++++.|..+.+ .++.+|+||+++|+|||||||++|.|..||++++++++.|+.++++.++.+...++.
T Consensus 17 ~~~~g~~~~~~~e~--------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 17 TLISGTIFYSTVEG--------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHSC--------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456676665521 478999999999999999999999999999999999999999999999999887764
No 31
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.30 E-value=7.7e-13 Score=136.56 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=67.3
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
++++|.+ |+++.+. .++..+.++++|+||+++|||||||||++|.|..||++++++++.|+++++++++.+++.|++.
T Consensus 61 ~l~fa~l-y~~~~~~-~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 61 NALFALA-YLACGDV-IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp HHHHHHH-HHHTCSC-STTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHhhccc-cCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455666 7777532 3456789999999999999999999999999999999999999999999999999999998753
No 32
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.29 E-value=1e-12 Score=136.89 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=68.6
Q ss_pred hhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhH
Q psy13136 140 PCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 218 (695)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~ 218 (695)
++++++|++|++. .++..+.++++|+||+++|||||||||++|.|..||++++++++.|+++++++++.+++.|++..
T Consensus 76 l~fally~~e~~~-~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 76 TLFALLYQLGDAP-IANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp HHHHTTTSSSSSC-CCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccc-ccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457779999642 34456889999999999999999999999999999999999999999999999999999988643
No 33
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.28 E-value=1.1e-12 Score=140.24 Aligned_cols=81 Identities=28% Similarity=0.596 Sum_probs=72.1
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHHh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~ 217 (695)
+++++.+.|+.|+.. +.+.|.++++|+||+++|||||||||++|.|..||++++++++.|+++++++++.+.++|.+.
T Consensus 140 ~~~~a~~~~~~e~~~--~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 140 LFAVALAAYVIERDI--QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999854 234589999999999999999999999999999999999999999999999999999999876
Q ss_pred HHH
Q psy13136 218 YSH 220 (695)
Q Consensus 218 ~~~ 220 (695)
.++
T Consensus 218 ~~~ 220 (355)
T 3beh_A 218 VRR 220 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 34
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.28 E-value=9.3e-12 Score=128.44 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 512 VFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVI 591 (695)
Q Consensus 512 ~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i 591 (695)
+++.++.+++||++++..++ ..++..+.+|.+|+||+++|+||+||||++|.|+.|++++++.+++|+++++++++++
T Consensus 54 ~~~~~~~~l~fa~ly~~~~~--~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v 131 (301)
T 1xl4_A 54 TGLYLVTNALFALAYLACGD--VIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLI 131 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--CSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc--ccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556788888554432 2345578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy13136 592 VSNFAM 597 (695)
Q Consensus 592 ~~~f~~ 597 (695)
.+.+++
T Consensus 132 ~~~~~~ 137 (301)
T 1xl4_A 132 YARFTR 137 (301)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998873
No 35
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.27 E-value=8.7e-12 Score=129.96 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHH
Q psy13136 503 ASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVL 582 (695)
Q Consensus 503 ~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~ 582 (695)
.+++.++.+++++++++.+++.++|++++.. .++..+.+|.+||||+++|+||+||||++|.|..|++++++++++|++
T Consensus 58 ~~~~~ll~~~~~~~l~~~l~fally~~e~~~-~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~ 136 (333)
T 1p7b_A 58 VSWPVFFASLAALFVVNNTLFALLYQLGDAP-IANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMS 136 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTSSSSSC-CCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 3455555555444444434444446666521 234457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy13136 583 TIALPVPVIVSNFAM 597 (695)
Q Consensus 583 ~~~l~ia~i~~~f~~ 597 (695)
++++++|.+.+.+++
T Consensus 137 ~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 137 GIALSTGLVFARFAR 151 (333)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998884
No 36
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.27 E-value=1.2e-12 Score=121.37 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=60.0
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
++++++++|..+. + .++.+|+||+++|+|||||||++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus 37 ~~~~g~~~~~~~e----~----~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 37 TLTSGTIFYSTVE----G----LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp HHHHHHHHHHHTS----C----CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhc----C----CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666542 1 47999999999999999999999999999999999999999999999999887554
No 37
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.27 E-value=2.4e-11 Score=126.21 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCC--chhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 515 LVLGIVIFASLVYYAERIQANPHNDFN--SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIV 592 (695)
Q Consensus 515 l~l~~~ifa~l~~~~e~~~~~~~~~f~--~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~ 592 (695)
+++.+++||.+ +.|+ +.+..++. +|.+|+||+++|+|||||||++|.|..|++++++.+++|++++++++|.+.
T Consensus 53 ~~~~~~~fa~~--~~eg--~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~ 128 (321)
T 2qks_A 53 FLLLNTAFATL--YMLG--SAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAF 128 (321)
T ss_dssp HHHHHHHHHHH--HHTS--SSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHcC--CccccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677732 4554 23445677 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy13136 593 SNFAM 597 (695)
Q Consensus 593 ~~f~~ 597 (695)
+.+++
T Consensus 129 ~~~~~ 133 (321)
T 2qks_A 129 IKMSQ 133 (321)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 98884
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.27 E-value=1.1e-12 Score=136.46 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=66.4
Q ss_pred chhhhhHhhhhhhcCCCCCCCcc--cccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhH
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFN--SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 215 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~ 215 (695)
++++| .++.|.+. ..+.++ ++++|+||+++|||||||||++|.|..||++++++++.|+++++++++.+++.|+
T Consensus 57 ~~~fa--~~~~eg~~--~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 57 NTAFA--TLYMLGSA--PIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp HHHHH--HHHHTSSS--CBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHcCCc--cccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 23677532 345677 9999999999999999999999999999999999999999999999999999998
Q ss_pred HhHHH
Q psy13136 216 MYYSH 220 (695)
Q Consensus 216 ~~~~~ 220 (695)
+..++
T Consensus 133 ~~~~r 137 (321)
T 2qks_A 133 QPKKR 137 (321)
T ss_dssp SCCCG
T ss_pred HHHhh
Confidence 75433
No 39
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.14 E-value=3.8e-10 Score=115.83 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=56.7
Q ss_pred CchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 541 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYS 600 (695)
Q Consensus 541 ~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~ 600 (695)
++|.+|+||+++|+|||||||++|.|..||+|+++++++|+.+++++++.+.+.+.+...
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~ 173 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 679999999999999999999999999999999999999999999999999999887554
No 40
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.13 E-value=1.2e-11 Score=108.38 Aligned_cols=49 Identities=69% Similarity=1.186 Sum_probs=40.0
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhhhhhHHHHHH
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAV 50 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~~e~~e~l~~ 50 (695)
||+||+|+++|...|.+|++||||+++++++ |||.+|+++||++++++.
T Consensus 66 ~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~-CC~~~~~~~~~~~~~~~~ 114 (115)
T 3kvt_A 66 SGKLHYPTDVCGPLFEEELEFWGLDSNQVEP-CCWMTYTAHRDTQETLAV 114 (115)
T ss_dssp HSCBCCCSSSCHHHHHHHHHHHTCCGGGBCG-GGSHHHHSCC--------
T ss_pred CCCCCCCCcccHHHHHHHHHHhCCChHHHHH-HHHHHHHhccchhhhhhc
Confidence 5999999999999999999999999999997 999999999998776653
No 41
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.05 E-value=6.1e-10 Score=115.68 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hccCC--C------CCCCCchhhHHHHHHhhhhcccccCCCcc--chhhHHHHH
Q psy13136 508 LTLLVFFLVLGIVIFASLVYYAE---RIQAN--P------HNDFNSIPLGLWWALVTMTTVGYGDMAPK--TYVGMFVGA 574 (695)
Q Consensus 508 l~~~~~ll~l~~~ifa~l~~~~e---~~~~~--~------~~~f~~~~~aly~~~~tltTvGyGDi~p~--t~~g~~~~~ 574 (695)
+..+++..++.+++||+++|.+. ++... + -.++.+|.+||||+++|+||+||||++|. ++.|+++++
T Consensus 46 llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~ 125 (340)
T 3sya_A 46 LLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLL 125 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHH
Confidence 34455556677788999887754 21110 1 14578999999999999999999999997 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 575 LCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 575 ~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
+.+++|++++++.+|++...+++
T Consensus 126 ~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 126 IQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999884
No 42
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.05 E-value=8e-11 Score=122.29 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=59.1
Q ss_pred CcccccchhhhhhhhheecccCCCCCc--ccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhHHH
Q psy13136 158 DFNSIPLGLWWALVTMTTVGYGDMAPK--TYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSH 220 (695)
Q Consensus 158 ~~~~~~~~~~~~~~t~ttvgygd~~p~--t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~ 220 (695)
.+.++++|+||+++|+|||||||++|. ++.|++++++.++.|++++|+++++++.+|++..++
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 578999999999999999999999997 789999999999999999999999999999886655
No 43
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.01 E-value=3.8e-11 Score=127.30 Aligned_cols=73 Identities=29% Similarity=0.497 Sum_probs=60.6
Q ss_pred chhhhhHhh-hhhhcCCCCCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhHhhhhhHH
Q psy13136 138 VFPCVSLVY-YAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 216 (695)
Q Consensus 138 ~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~ 216 (695)
++++++++| +.|+ .++.+|+||+++|+|||||||++|.|..||++++++++.|+++++++++.+.+.+.+
T Consensus 30 ~~~~~~~~~~~~e~---------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 30 VIIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SHHHHTTTTTTSSS---------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHHhC---------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666 5563 378999999999999999999999999999999999999999999999999998877
Q ss_pred hHH
Q psy13136 217 YYS 219 (695)
Q Consensus 217 ~~~ 219 (695)
...
T Consensus 101 ~~~ 103 (336)
T 1lnq_A 101 REQ 103 (336)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.98 E-value=1.5e-09 Score=112.90 Aligned_cols=89 Identities=15% Similarity=0.275 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--ccC---CCC-------CCCCchhhHHHHHHhhhhcccccCCCcc--chhhHHHHH
Q psy13136 509 TLLVFFLVLGIVIFASLVYYAER--IQA---NPH-------NDFNSIPLGLWWALVTMTTVGYGDMAPK--TYVGMFVGA 574 (695)
Q Consensus 509 ~~~~~ll~l~~~ifa~l~~~~e~--~~~---~~~-------~~f~~~~~aly~~~~tltTvGyGDi~p~--t~~g~~~~~ 574 (695)
..+++..++.+++||+++|++.. .+. ++. .++.+|.+||||+++|+||+||||++|. ++.|+++++
T Consensus 49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~ 128 (343)
T 3spc_A 49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVV 128 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHH
Confidence 34455667778888988876421 111 111 2578999999999999999999999974 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 575 LCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 575 ~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
+.+++|++++++.+|++...+++
T Consensus 129 ~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 129 VQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999884
No 45
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.97 E-value=1.2e-09 Score=124.14 Aligned_cols=83 Identities=29% Similarity=0.595 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHH
Q psy13136 508 LTLLVFFLVLGIVIFASLVYY----AERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 583 (695)
Q Consensus 508 l~~~~~ll~l~~~ifa~l~~~----~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~ 583 (695)
+...+++++++++++++++++ .|+ ..++|++|+||+++|+||+||||++|.|..|++++++++++|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~ 92 (565)
T 4gx0_A 20 LLLYCAFLLVMLLAYASIFRYLMWHLEG-------RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIF 92 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 444444445555555555444 443 125899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHH
Q psy13136 584 IALPVPV-IVSNFAM 597 (695)
Q Consensus 584 ~~l~ia~-i~~~f~~ 597 (695)
++++++. +.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 93 LDIILPFGFVSMFLA 107 (565)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 9999988 5555543
No 46
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.96 E-value=2.3e-09 Score=108.36 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=54.6
Q ss_pred CCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 540 FNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 598 (695)
Q Consensus 540 f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~ 598 (695)
-++|.+|+||+++|+|||||||++|.|..||+|+++++++|+.++.++++.+.+.+...
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999988777643
No 47
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.95 E-value=1e-10 Score=120.99 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred hhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccC-CC-CCcccch----hHHHHHHHHHHHHHhhcchhHhhhh
Q psy13136 140 PCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYG-DM-APKTYVG----MFVGALCALAGVLTIALPVPVIVSN 213 (695)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgyg-d~-~p~t~~g----~~~~~~~~~~gi~~~~~~i~~i~~~ 213 (695)
++|.+.+..+++. ...+|+++++|+||+++|+||+||| |+ +|.|..| ++++++++++|++++++++|++.++
T Consensus 161 ~fa~~g~~~f~~~--~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~ 238 (285)
T 3rvy_A 161 IFAIMATQLFGER--FPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDA 238 (285)
T ss_dssp HHHHHHHHHHTTT--CHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--cccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677543 2245999999999999999999999 98 4998865 8999999999999999999999999
Q ss_pred hHHhHHHHHHh
Q psy13136 214 FAMYYSHTQAR 224 (695)
Q Consensus 214 f~~~~~~~~~~ 224 (695)
|++..++.+.+
T Consensus 239 f~~~~~~~~~~ 249 (285)
T 3rvy_A 239 MAILNQKEEQH 249 (285)
T ss_dssp C----------
T ss_pred HHHHHHHHHHH
Confidence 99877654433
No 48
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.95 E-value=2.8e-10 Score=118.35 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=56.9
Q ss_pred CcccccchhhhhhhhheecccCCCCC--cccchhHHHHHHHHHHHHHhhcchhHhhhhhHHhH
Q psy13136 158 DFNSIPLGLWWALVTMTTVGYGDMAP--KTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 218 (695)
Q Consensus 158 ~~~~~~~~~~~~~~t~ttvgygd~~p--~t~~g~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~ 218 (695)
.+.++++|+||+++|+|||||||++| .++.|++++++.++.|++++++++++++.+|++-.
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 47899999999999999999999986 49999999999999999999999999999988744
No 49
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.90 E-value=2.3e-11 Score=128.91 Aligned_cols=73 Identities=29% Similarity=0.561 Sum_probs=60.0
Q ss_pred HHHHHHHH-HHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 518 GIVIFASL-VYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 518 ~~~ifa~l-~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~ 596 (695)
++++++.+ +++.|+ ++|.+|+||+++|+||+||||++|.|..||+++++++++|+++++++++.+.+.+.
T Consensus 29 ~~~~~~~~~~~~~e~---------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (336)
T 1lnq_A 29 AVIIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLI 99 (336)
T ss_dssp TSHHHHTTTTTTSSS---------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 446665 58999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q psy13136 597 MYY 599 (695)
Q Consensus 597 ~~~ 599 (695)
+..
T Consensus 100 ~~~ 102 (336)
T 1lnq_A 100 NRE 102 (336)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 50
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.84 E-value=1.9e-09 Score=94.41 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCC-----ccchhhH-HHHHHHH
Q psy13136 504 SAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMA-----PKTYVGM-FVGALCA 577 (695)
Q Consensus 504 s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~-----p~t~~g~-~~~~~~~ 577 (695)
+.+.+.++++++++++++||++....-+. ..+.+|+++++|++..|+.+|+.||.|+. ...+.+. +|+++++
T Consensus 2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~--~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~ 79 (112)
T 4f4l_A 2 SHMGVGSVAALLTVVFYIAAVMATNLYGA--TFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIM 79 (112)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTT--TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHCC--CccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45668889999999999999986655442 23457999999999999999999998643 2223444 4555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 578 LAGVLTIALPVPVIVSNFAMYYS 600 (695)
Q Consensus 578 l~g~~~~~l~ia~i~~~f~~~~~ 600 (695)
++.++++|+++|+|+++|++..+
T Consensus 80 i~~fi~lNLfiaVi~~~f~~~~~ 102 (112)
T 4f4l_A 80 LTTFTVLNLFIGIIVDAMAITKE 102 (112)
T ss_dssp HHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66699999999999999996443
No 51
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=98.83 E-value=1e-09 Score=94.75 Aligned_cols=44 Identities=34% Similarity=0.591 Sum_probs=41.5
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhhhhhH
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQ 45 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~~e~~ 45 (695)
||+||+|+++|...|.+|++||||++..+++ |||++|.+++++.
T Consensus 60 ~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~-cc~~~~~~~~~~~ 103 (105)
T 1nn7_A 60 TGKLHYPRHECISAYDEELAFFGLIPEIIGD-CCYEEYKDRRREN 103 (105)
T ss_dssp HSCBCCCTTSCHHHHHHHHHHHTCCSCCBCH-HHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHhhh
Confidence 5999999999999999999999999999997 9999999998854
No 52
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.79 E-value=3.7e-09 Score=119.99 Aligned_cols=57 Identities=28% Similarity=0.652 Sum_probs=51.4
Q ss_pred ccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHHHHhhcchhH-hhhhhHH
Q psy13136 160 NSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPV-IVSNFAM 216 (695)
Q Consensus 160 ~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi~~~~~~i~~-i~~~f~~ 216 (695)
.++.+|+||+++|||||||||++|.|..||+++++++++|+++++++++. +.+.+..
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999987 4444433
No 53
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=98.72 E-value=3.5e-09 Score=93.93 Aligned_cols=45 Identities=27% Similarity=0.506 Sum_probs=42.1
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhhhhhHH
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQE 46 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~~e~~e 46 (695)
||+||+|+++|...|.+|++||||++..++. |||.+|.+++++.+
T Consensus 73 ~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~-cC~~~~~~~~~~~~ 117 (124)
T 1s1g_A 73 TGKLHYPRYECISAYDDELAFYGILPEIIGD-CCYEEYKDRKRENL 117 (124)
T ss_dssp HSCBCCCTTSCHHHHHHHHHHTTCCGGGBCH-HHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHHhHH
Confidence 5999999999999999999999999999997 99999999998653
No 54
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.63 E-value=1.8e-05 Score=78.60 Aligned_cols=78 Identities=5% Similarity=0.087 Sum_probs=58.2
Q ss_pred chhhhhHhhhhhhcCCCCCCCcccccchhhhhhhhheecccCCCCC----cccchh-HHHHHHHHHHHHHhhcchhHhhh
Q psy13136 138 VFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAP----KTYVGM-FVGALCALAGVLTIALPVPVIVS 212 (695)
Q Consensus 138 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~ttvgygd~~p----~t~~g~-~~~~~~~~~gi~~~~~~i~~i~~ 212 (695)
++++|.+.+..+++. ...+|+++++|+||...++||.||+|+.. .+..+. .+.++.++++++++++++|++.+
T Consensus 144 ~~ifa~~g~~lf~~~--~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~ 221 (229)
T 4dxw_A 144 LYIYATMGAILFGND--DPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVD 221 (229)
T ss_dssp HHHHHHHHHHHTTTT--SCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--CcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666543 23579999999999999999999999622 122333 45566677889999999999999
Q ss_pred hhHHh
Q psy13136 213 NFAMY 217 (695)
Q Consensus 213 ~f~~~ 217 (695)
+|++.
T Consensus 222 ~f~~~ 226 (229)
T 4dxw_A 222 VVIQK 226 (229)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 99864
No 55
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=97.63 E-value=8.8e-06 Score=69.12 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=29.9
Q ss_pred CceecCCCCChhhHHHHhhhhccCccCCCcccc
Q psy13136 2 GKLHYPTDVCGPLFEEELEFWGLDAPKYKIESN 34 (695)
Q Consensus 2 GkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC 34 (695)
||||+|+++|...|.+|++||||++..|+. |.
T Consensus 64 G~l~~p~~~~~~~~~~Ea~fy~i~~~~~~~-~~ 95 (100)
T 1t1d_A 64 GRLRRPVNVPLDVFSEEIKFYELGENAFER-YR 95 (100)
T ss_dssp SCCCCCTTSCHHHHHHHHHHTTCCHHHHHH-HH
T ss_pred CcccCCCCCCHHHHHHHHHHcCCCHHHHHH-HH
Confidence 899999999999999999999999999985 54
No 56
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.13 E-value=0.001 Score=63.34 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCceecCCCCChhhHHHHhhhhccCccCCCcccchhhhHhh
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKH 41 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~~l~~~CC~~~y~~~ 41 (695)
||+||+|+++|...|.+|++||||++ +.. ||..+..++
T Consensus 76 tG~L~lP~~~~~~~l~eEA~FygL~~--Lv~-~l~~~i~er 113 (202)
T 3drx_A 76 HGKLVINKDLAEEGVLEEAEFYNITS--LIK-LVKDKIRER 113 (202)
T ss_dssp HSCCCCCTTSCHHHHHHHHHHTTCHH--HHH-HHHHHHHHH
T ss_pred CCccCCCCCCCHHHHHHHHHHCCcHH--HHH-HHHHHHHHH
Confidence 59999999999999999999999986 443 887665543
No 57
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=96.07 E-value=0.0013 Score=56.53 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=25.1
Q ss_pred CCceecCCCCChhhHHHHhhhhccCcc
Q psy13136 1 TGKLHYPTDVCGPLFEEELEFWGLDAP 27 (695)
Q Consensus 1 tGkLh~p~~~C~~~F~eEl~fwgi~~~ 27 (695)
||+||+|+++|...|.+|++||||++.
T Consensus 70 ~g~l~~p~~~~~~~l~~Ea~fy~l~~L 96 (107)
T 3drz_A 70 HGKLVINKDLAEEGVLEEAEFYNITSL 96 (107)
T ss_dssp HSCCCCCTTSCHHHHHHHHHHHTCHHH
T ss_pred CCeeCCCCCCCHHHHHHHHHHCCCHHH
Confidence 599999999999999999999999863
No 58
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=96.03 E-value=0.0013 Score=77.60 Aligned_cols=126 Identities=16% Similarity=0.260 Sum_probs=78.7
Q ss_pred CChHHHHHhhcchhhhccCCcchhhhh----hhHHHhhhcCCCCCccceeeeeeeeeeccccccccccccceeccccCcc
Q psy13136 61 PSDEEMARKFGFEEAYFKGRLSWWQKT----KPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPS 136 (695)
Q Consensus 61 ~~~e~~~~~~~~~~~~~~~~~~~~~~~----r~~iW~l~e~P~SS~~aki~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 136 (695)
.++++. +.++|+.||+..+..+..+. .+.+|. |=.|++....-. +. +
T Consensus 472 ~t~~R~-~~~dfs~py~~~~~~~~v~~~~~~~~~~~~-fl~Pf~~~vW~~---i~------------------------~ 522 (823)
T 3kg2_A 472 ITLVRE-EVIDFSKPFMSLGISIMIKKPQKSKPGVFS-FLDPLAYEIWMC---IV------------------------F 522 (823)
T ss_dssp CCHHHH-TTEEECSCSEEECEEEEEECCCCCCCCGGG-TTTTSCHHHHHH---HH------------------------H
T ss_pred cchhhe-eeEEeccchhhCCEEEEEECCCcccccchH-hhcCCchhHHHH---HH------------------------H
Confidence 455554 67999999998876543221 122333 334555432111 00 1
Q ss_pred cchhhhhHhhhhhhcCCC----------------CCCCcccccchhhhhhhhheecccCCCCCcccchhHHHHHHHHHHH
Q psy13136 137 SVFPCVSLVYYAERIQAN----------------PHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGV 200 (695)
Q Consensus 137 ~~~~~~~~~~~~e~~~~~----------------~~~~~~~~~~~~~~~~~t~ttvgygd~~p~t~~g~~~~~~~~~~gi 200 (695)
++++++.++|+.+|-.+. +...-.++.+++|+++.+++..| ++..|.+..+|++.++|+++++
T Consensus 523 ~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~l 601 (823)
T 3kg2_A 523 AYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTL 601 (823)
T ss_dssp HHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHH
Confidence 345566777877763210 00112347799999999999999 7899999999999999999999
Q ss_pred HHhhcchhHhhhhhHH
Q psy13136 201 LTIALPVPVIVSNFAM 216 (695)
Q Consensus 201 ~~~~~~i~~i~~~f~~ 216 (695)
++.+...+.+++.++.
T Consensus 602 il~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 602 IIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988765
No 59
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=93.59 E-value=0.042 Score=34.45 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhH
Q psy13136 470 ADILEFFSIIRIMRLFKLTRHSSGLK 495 (695)
Q Consensus 470 ~~~l~~lRllRllR~lkl~r~~~~l~ 495 (695)
...++.+|.+|++|.+|.+..+++++
T Consensus 3 ~~~l~~lrtlR~LRpLr~isr~~gmk 28 (28)
T 2lcm_A 3 INTIKSLRVLRVLRPLKTIKRLPKLK 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred cchhhHHHHHHHhcchHHHhhcccCC
Confidence 45788999999999999998887763
No 60
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=92.20 E-value=0.065 Score=46.21 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCcccccchhhhhhhhheecccCC-CC-Cc---ccch-hHHHHHHHHHHHHHhhcchhHhhhhhHHhHHH
Q psy13136 157 NDFNSIPLGLWWALVTMTTVGYGD-MA-PK---TYVG-MFVGALCALAGVLTIALPVPVIVSNFAMYYSH 220 (695)
Q Consensus 157 ~~~~~~~~~~~~~~~t~ttvgygd-~~-p~---t~~g-~~~~~~~~~~gi~~~~~~i~~i~~~f~~~~~~ 220 (695)
.+|++++.|+.-....+|+=||.| ++ |. .+.. -.+.++.+++.++++++++|+|.++|++..++
T Consensus 34 ~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~~ 103 (112)
T 4f4l_A 34 EWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQ 103 (112)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC----------
T ss_pred ccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999975 32 32 2223 34556666788899999999999999875433
No 61
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=91.72 E-value=0.16 Score=59.64 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=45.6
Q ss_pred chhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAM 597 (695)
Q Consensus 542 ~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~ 597 (695)
++.+++|+++.++++.| ++..|.+..+|+++++|+++++++.+...|.+.+.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37789999999999999 78999999999999999999999999999999988874
No 62
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=82.91 E-value=0.36 Score=29.51 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q psy13136 414 ECLCNAWFTFEILMRFISSPR 434 (695)
Q Consensus 414 ~~~~~~iF~~E~~lk~~~~~~ 434 (695)
|++|+.+|++|+++|+++.|.
T Consensus 3 e~~F~~IYtfE~liKi~ArGf 23 (26)
T 1qg9_A 3 EYTFTGIYTFESLIKILARXX 23 (26)
T ss_dssp SCCHHHHHHHHHHHHHHTC--
T ss_pred eEEeeHHHHHHHHHHHHHhhh
Confidence 457999999999999998763
No 63
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=75.97 E-value=13 Score=33.14 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.1
Q ss_pred ccchhhhhhHhHHHHHHHH
Q psy13136 442 SVNVIDYIATLSFYIDLLL 460 (695)
Q Consensus 442 ~~n~~D~i~vi~~~i~~~~ 460 (695)
.+..+|.++++-+.++.+.
T Consensus 53 ~~~~id~~~~~iF~~Ey~l 71 (147)
T 2kyh_A 53 RLYLVDLILVIILWADYAY 71 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567888888888777654
No 64
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=68.89 E-value=28 Score=30.29 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=33.5
Q ss_pred ccccchhhhhhHhHHHHHHHHHhhhhc----------------cchh------hHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy13136 440 KASVNVIDYIATLSFYIDLLLQKFASH----------------LENA------DILEFFSIIRIMRLFKLTRHSSGLKI 496 (695)
Q Consensus 440 ~~~~n~~D~i~vi~~~i~~~~~~~~~~----------------~~~~------~~l~~lRllRllR~lkl~r~~~~l~~ 496 (695)
...+..+|.++++-+.++.+.--.... .+.. ..++++|++|++|++|++|..+..+.
T Consensus 36 ~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~~niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~ 114 (132)
T 1ors_C 36 LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISR 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344677898888888888765332110 0111 12456677777777777766544443
No 65
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=35.59 E-value=9.5 Score=33.85 Aligned_cols=15 Identities=0% Similarity=0.080 Sum_probs=11.7
Q ss_pred cccchhhhHhhhhhH
Q psy13136 31 IESNFRSIIKHRDTQ 45 (695)
Q Consensus 31 ~~CC~~~y~~~~e~~ 45 (695)
.+|||++|.+++++.
T Consensus 124 ~~CC~~~~~~~~~e~ 138 (140)
T 2nz0_B 124 GDCCYEEYKDRKREN 138 (140)
T ss_dssp CTTTHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 579999999998854
No 66
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=29.85 E-value=51 Score=35.68 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=34.1
Q ss_pred chhhHHHHHHhhhhccc--ccCCC----ccchhhHHHHHHHHHHH-HHHHHH
Q psy13136 542 SIPLGLWWALVTMTTVG--YGDMA----PKTYVGMFVGALCALAG-VLTIAL 586 (695)
Q Consensus 542 ~~~~aly~~~~tltTvG--yGDi~----p~t~~g~~~~~~~~l~g-~~~~~l 586 (695)
++.+|+.-+..++.|+| .|.+. .-+..+|++.++.|++| +-++++
T Consensus 423 ~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~GRLei~tv 474 (494)
T 3pjz_A 423 DELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFGRLEIFTL 474 (494)
T ss_dssp CHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHHHTTTHHH
T ss_pred cHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHHHhHHHHH
Confidence 57889999999999998 45433 34578999999999999 444444
No 67
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=26.99 E-value=2.1e+02 Score=29.95 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy13136 355 IGVVSVFFICISILSFCLK 373 (695)
Q Consensus 355 f~~~i~~lI~~s~i~~~~~ 373 (695)
+.++.++-++.|++++.+-
T Consensus 55 ~~~i~~~g~~gN~lvi~~~ 73 (502)
T 3odu_A 55 YSIIFLTGIVGNGLVILVM 73 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455566655543
No 68
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.98 E-value=1.9e+02 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13136 576 CALAGVLTIALPVPVIVSNFA 596 (695)
Q Consensus 576 ~~l~g~~~~~l~ia~i~~~f~ 596 (695)
-+++|++++++++=.+...+.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444443
Done!