RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13136
(695 letters)
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 131 bits (331), Expect = 4e-35
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 20/197 (10%)
Query: 412 YIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENAD 471
++ + FT E+L++FI+ K ++ ++ N++D++ L + L+L E++
Sbjct: 1 ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLG---EDSG 57
Query: 472 ILEFFSIIRIMRLFKLTRHSSGLKILMQTF---RASAKELTLLVFFLVLGIVIFASLVYY 528
+L ++R++RL +L R GL+ L+Q+ S L LL+ L+ I ++
Sbjct: 58 LLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFG 117
Query: 529 AE--------RIQANPHNDFNSIPLGLWWALVTMTTVGYGD-----MAPKTYVGM-FVGA 574
E N +++F+S L W T+TT G+GD + P T +G F
Sbjct: 118 GELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVLGKIFFVI 177
Query: 575 LCALAGVLTIALPVPVI 591
L GVL + L + VI
Sbjct: 178 FIILGGVLLLNLLIGVI 194
Score = 54.2 bits (131), Expect = 2e-08
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 154 NPHNDFNSIPLGLWWALVTMTTVGYGD-----MAPKTYVGM-FVGALCALAGVLTIALPV 207
N +++F+S L W T+TT G+GD + P T +G F L GVL + L +
Sbjct: 132 NGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNLLI 191
Query: 208 PVI 210
VI
Sbjct: 192 GVI 194
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 53.4 bits (129), Expect = 3e-09
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 514 FLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVG 573
L+L ++IF ++ Y E L+++ VT+TT+GYGD+ P T G
Sbjct: 1 ILLLLVLIFGTVYYSLEE-----EGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFT 55
Query: 574 ALCALAGVLTIAL 586
+ L G+ L
Sbjct: 56 IIYILIGIPLFLL 68
Score = 48.4 bits (116), Expect = 2e-07
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 141 CVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGV 200
VYY+ + + ++ L+++ VT+TT+GYGD+ P T G + L G+
Sbjct: 8 IFGTVYYSLEEEGWGWDFLDA----LYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGI 63
Query: 201 LTIAL 205
L
Sbjct: 64 PLFLL 68
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain. The
N-terminal, cytoplasmic tetramerisation domain (T1) of
voltage-gated K+ channels encodes molecular
determinants for subfamily-specific assembly of
alpha-subunits into functional tetrameric channels. It
is distantly related to the BTB/POZ domain pfam00651.
Length = 92
Score = 43.7 bits (104), Expect = 2e-05
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 2 GKLHYPTDVCGPLFEEELEFWGLD 25
GKLH P +VC F EELEF+GL
Sbjct: 62 GKLHRPEEVCLDSFLEELEFYGLG 85
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 19/102 (18%)
Query: 469 NADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYY 528
L + I+ ++ L R + T A +LL + F +L
Sbjct: 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAGTLFAVISITSLLFY------STFGALYLG 159
Query: 529 AERIQANPHNDFN----SIPLGLWWALVTMTTVGYGDMAPKT 566
F+ S+ ++++VTM+TVGYGD+ P +
Sbjct: 160 DG---------FSPPIESLSTAFYFSIVTMSTVGYGDIVPVS 192
Score = 38.1 bits (89), Expect = 0.012
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKT 185
S+ ++++VTM+TVGYGD+ P +
Sbjct: 168 SLSTAFYFSIVTMSTVGYGDIVPVS 192
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 38.2 bits (88), Expect = 0.007
Identities = 26/177 (14%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 420 WFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSII 479
F L R + + + ID + ++
Sbjct: 14 IFAIVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDE-------------DRVELL 60
Query: 480 RIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA-NPHN 538
R + L + ++ ++L A+ +++ + A+ V+ +A NP
Sbjct: 61 RELGLLVVLGDATREEVLEAAGIERAR-------AVIVTLSDDATNVFIVLLARAINPEL 113
Query: 539 DFNSIPLGLWWALVTMTTVGYGDM---APKTYVGMFVGALCALAGVLTIALPVPVIV 592
+ + L A+ T+TTVG ++ ++ + + AL L G A+ + +
Sbjct: 114 EILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILALIEI 170
Score = 32.8 bits (74), Expect = 0.39
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 154 NPHNDFNSIPLGLWWALVTMTTVGYGDM---APKTYVGMFVGALCALAGVLTIALPVPVI 210
NP + + L A+ T+TTVG ++ ++ + + AL L G A+ +
Sbjct: 110 NPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILALIE 169
Query: 211 V 211
+
Sbjct: 170 I 170
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 37.2 bits (86), Expect = 0.017
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 239 QPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 277
+ G G P G GG P G P G GGGG S
Sbjct: 26 PAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGS 64
Score = 37.2 bits (86), Expect = 0.017
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 620 QPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 658
+ G G P G GG P G P G GGGG S
Sbjct: 26 PAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGS 64
Score = 31.4 bits (71), Expect = 1.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 241 RGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 274
G G G P GP G G GGP GGG G
Sbjct: 42 GGGGPGAGGGAPGGPVGGGGGGSGGPPGGGEVAG 75
Score = 31.4 bits (71), Expect = 1.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 622 RGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 655
G G G P GP G G GGP GGG G
Sbjct: 42 GGGGPGAGGGAPGGPVGGGGGGSGGPPGGGEVAG 75
Score = 31.0 bits (70), Expect = 1.9
Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 627 LPGQGPPSGPGG-TPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKM 685
PGQ G GP GG G G GGG P G P M
Sbjct: 22 APGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGPPGGGEVAGEAEDAM 81
Query: 686 DNY 688
+
Sbjct: 82 SEF 84
Score = 29.1 bits (65), Expect = 6.9
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 246 LPGQGPPSGPGG-TPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANN 295
PGQ G GP GG G G GGG P G P
Sbjct: 22 APGQPAQQGYANQGMGGPVGGGGGPGAGGGAPGGPVGGGGGGSGGPPGGGE 72
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 37.2 bits (86), Expect = 0.036
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 36/121 (29%)
Query: 476 FSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFL----VLGIVIF----ASLVY 527
+S++ ++R ++L R + Q F K++ F++ +L + +F A +Y
Sbjct: 168 YSLLGLLRFWRLRR-------VKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLY 220
Query: 528 Y--AERIQANPHN----------DFNSIPLG------LWWALVTMTTVGYGDMAPKTYVG 569
Y A+R PH +F L ++W++ TMTTVGYGD+ +
Sbjct: 221 YLIADRY---PHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIE 277
Query: 570 M 570
M
Sbjct: 278 M 278
Score = 36.0 bits (83), Expect = 0.079
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 166 LWWALVTMTTVGYGDMAPKTYVGM 189
++W++ TMTTVGYGD+ + M
Sbjct: 255 IYWSITTMTTVGYGDLHAVNTIEM 278
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 33.3 bits (77), Expect = 0.38
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 9 DVCGPLFEE------ELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRL 54
++CG +E +L ++ PK + R KH L +LD+L
Sbjct: 216 ELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKL 267
>gnl|CDD|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763). This
eukaryotic family of proteins has no known function.
Length = 91
Score = 30.8 bits (70), Expect = 0.45
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 237 VEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 277
V + G+ G GG G +G GGGG PS
Sbjct: 44 VTKRYRKNSSSGKRWDGGRGGPGPPGGGRRMGRIGGGGGPS 84
Score = 30.8 bits (70), Expect = 0.45
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 618 VEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 658
V + G+ G GG G +G GGGG PS
Sbjct: 44 VTKRYRKNSSSGKRWDGGRGGPGPPGGGRRMGRIGGGGGPS 84
Score = 28.5 bits (64), Expect = 3.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 248 GQGPPSGPGGTPVGPCGGPVGGGGGGGIP 276
G+G P PGG G G +GGGGG P
Sbjct: 61 GRGGPGPPGG---GRRMGRIGGGGGPSRP 86
Score = 28.5 bits (64), Expect = 3.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 629 GQGPPSGPGGTPVGPCGGPVGGGGGGGIP 657
G+G P PGG G G +GGGGG P
Sbjct: 61 GRGGPGPPGG---GRRMGRIGGGGGPSRP 86
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 32.7 bits (75), Expect = 0.49
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 39/203 (19%)
Query: 416 LCNAWFTFEILMRFISSPRKCEFIKA-SVNVIDYIATLSFYIDLLLQKFASHLENADILE 474
L F +L+ ++ E +A V+ L IDL L D E
Sbjct: 20 LLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVLLDGRRLLGDGKE 79
Query: 475 FFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQA 534
+ L L L ++ S +L L++ V + +
Sbjct: 80 TLLGFLLGFLLGLV-----LLGVIYYLSDSLFKLFGLLYVGVGLLALLPFR--------- 125
Query: 535 NPHNDFNSIPLGLWWALVTMTTVGYGD--------------MAP-----KTYVGMFVGAL 575
+ GL L+ V GD +AP KT+ G GAL
Sbjct: 126 -----LGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGAL 180
Query: 576 CALAGVLTIALPVPVIVSNFAMY 598
A+ + + + ++ N
Sbjct: 181 GAVLVAVLVIFLLSSLILNIWTL 203
Score = 30.7 bits (70), Expect = 2.2
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 136 SSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGD--------------M 181
S+F L+Y + A + GL L+ V GD +
Sbjct: 103 DSLFKLFGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKL 162
Query: 182 AP-----KTYVGMFVGALCALAGVLTIALPVPVIVSNFAMY 217
AP KT+ G GAL A+ + + + ++ N
Sbjct: 163 APKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTL 203
>gnl|CDD|197548 smart00157, PRP, Major prion protein. The prion protein is a major
component of scrapie-associated fibrils in
Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler
syndrome and bovine spongiform encephalopathy.
Length = 218
Score = 32.1 bits (73), Expect = 0.60
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 242 GPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 274
G R PGQG P G P G G GGG G
Sbjct: 13 GGSRYPGQGSPGGNRYPPQGGGWGQPHGGGWGQ 45
Score = 32.1 bits (73), Expect = 0.60
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 623 GPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 655
G R PGQG P G P G G GGG G
Sbjct: 13 GGSRYPGQGSPGGNRYPPQGGGWGQPHGGGWGQ 45
Score = 30.2 bits (68), Expect = 3.3
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 242 GPMRLPGQG-----PPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNP 296
G R P QG P G G P G G GGG G K + P
Sbjct: 24 GGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHNQWNKPSKP 83
Query: 297 KEMM 300
K M
Sbjct: 84 KTNM 87
Score = 30.2 bits (68), Expect = 3.3
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 623 GPMRLPGQG-----PPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNP 677
G R P QG P G G P G G GGG G K + P
Sbjct: 24 GGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHNQWNKPSKP 83
Query: 678 KEMM 681
K M
Sbjct: 84 KTNM 87
>gnl|CDD|191464 pfam06166, DUF979, Protein of unknown function (DUF979). This
family consists of several putative bacterial membrane
proteins. The function of this family is unclear.
Length = 308
Score = 32.6 bits (75), Expect = 0.70
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 510 LLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVG 569
L + ++++G+V + R + NP L+W L+ +T +GD P VG
Sbjct: 1 LEILYILIGLV-LLVTAVLSLRDRTNPK----RFGTALFWGLLALT-FLFGDYLPAVVVG 54
Query: 570 MFVGALCALAG 580
+ V A+ LAG
Sbjct: 55 VLVLAMALLAG 65
>gnl|CDD|205037 pfam12716, Apq12, Nuclear pore assembly and biogenesis. This is a
family of conserved fungal proteins involved in nuclear
pore assembly. Apq12 is an integral membrane protein of
the nuclear envelope (NE) and endoplasmic reticulum. Its
absence leads to a partial block in mRNA export and
cold-sensitive defects in the growth and localisation of
a subset of nucleoporins, particularly those
asymmetrically localised to the cytoplasmic fibrils. The
defects in nuclear pore assembly appear to be due to
defects in regulating membrane fluidity.
Length = 54
Score = 28.8 bits (65), Expect = 0.96
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 494 LKILMQTFRASAKELTLLV-FFLVLGIVIFASLVYY 528
LKIL R L L+V L IV VY
Sbjct: 18 LKILDYARRVVMFWLILVVRLLFWLAIVGLGVYVYL 53
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 32.3 bits (74), Expect = 0.97
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 471 DILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFA 523
IL F + ++LFK+ R + + + +T + KE LL F ++ I+ A
Sbjct: 296 IILAFLLFLTWLKLFKVLRFNRTMSLFTKTLSRALKE--LLGFAVMFVILFLA 346
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 32.4 bits (73), Expect = 1.1
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 220 HTQARAKLPKKRRRVLP-VEQPRGPMRLPGQGPPSGPGGTPVGPCG-----------GPV 267
TQ KL KK ++ L +E+ PP GP + + P
Sbjct: 481 FTQEIKKLIKKSKKKLAPIEEEDSDKH---DEPPEGPEASGLPPKAPGDKEGEEGEHEDS 537
Query: 268 GGGGG---GGIPSSVSSGNMNRRMNPAKANNP-------KEMMGPKMDTEKPSDEEMARK 317
GG P G + ++ PAK + P K+ PK D + P D E +K
Sbjct: 538 KESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPK-DPKHPKDPEEPKK 596
>gnl|CDD|191582 pfam06679, DUF1180, Protein of unknown function (DUF1180). This
family consists of several hypothetical mammalian
proteins of around 190 residues in length. The function
of this family is unknown.
Length = 163
Score = 31.0 bits (70), Expect = 1.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 247 PGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNP 296
P PP PG TP P G GGG S+ G + R +P + P
Sbjct: 43 PETQPPLPPGPTPANPTALGSGDAAGGGGSSTSDGGALATRPSPLLRDKP 92
Score = 31.0 bits (70), Expect = 1.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 628 PGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNP 677
P PP PG TP P G GGG S+ G + R +P + P
Sbjct: 43 PETQPPLPPGPTPANPTALGSGDAAGGGGSSTSDGGALATRPSPLLRDKP 92
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 38 IIKHRDTQETLAVLDRLDLDTEK-----PSDEEMARKFGFEEAY----FKGRLSWWQKTK 88
+ ++ + D + E EE KFG +E Y L
Sbjct: 62 LDPSGGGGKSTLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDELDAVLPGLLAGA 121
Query: 89 PQLWSLFDEPYSSN 102
++ L +
Sbjct: 122 GTVYYLLGRDPDLD 135
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction
only].
Length = 258
Score = 31.6 bits (72), Expect = 1.3
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 36/145 (24%)
Query: 515 LVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGA 574
L + +S + Y +R + L L L + +G F+GA
Sbjct: 52 LAVLFTSLSSALAYLKRGNVD-------WKLALILLLGAL-------------IGAFLGA 91
Query: 575 LCAL---AGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQG 631
L AL A +L + + +++ M A+A+ R R P
Sbjct: 92 LLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAEDRAARLR-------------PLLF 138
Query: 632 PPSGPGGTPVGPCGGPVGGGGGGGI 656
+ G G G G GGG GI
Sbjct: 139 ALALLIGFLAGFLSGLFGVGGGFGI 163
Score = 30.4 bits (69), Expect = 2.4
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 187 VGMFVGALCAL---AGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGP 243
+G F+GAL AL A +L + + +++ M A+A+ R R
Sbjct: 85 IGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAEDRAARLR---------- 134
Query: 244 MRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGI 275
P + G G G G GGG GI
Sbjct: 135 ---PLLFALALLIGFLAGFLSGLFGVGGGFGI 163
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517). This
family consists of several hypothetical glycine rich
plant and bacterial proteins of around 300 residues in
length. The function of this family is unknown.
Length = 280
Score = 31.5 bits (72), Expect = 1.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 239 QPRGPMRLPGQGPPSGPGGTPVGPCGGP-VGGGGGGGI 275
+ P G G PGG P P G GGGGG+
Sbjct: 24 RSSSPG---GGGYYGSPGGGFGFPFLIPFFGFGGGGGL 58
Score = 31.5 bits (72), Expect = 1.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 620 QPRGPMRLPGQGPPSGPGGTPVGPCGGP-VGGGGGGGI 656
+ P G G PGG P P G GGGGG+
Sbjct: 24 RSSSPG---GGGYYGSPGGGFGFPFLIPFFGFGGGGGL 58
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2. Arsenite is a
carcinogenic compound which can act as a co-mutagen by
inhibiting DNA repair. Arsenite-resistance protein 2 is
thought to play a role in arsenite resistance.
Length = 211
Score = 30.9 bits (70), Expect = 1.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 224 RAKLPKKRRRVLPVEQPRG-PMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIP 276
R LP+ + P P G LPG P + P G P+ G G GG P
Sbjct: 124 RPALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPP 177
Score = 30.9 bits (70), Expect = 1.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 605 RAKLPKKRRRVLPVEQPRG-PMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIP 657
R LP+ + P P G LPG P + P G P+ G G GG P
Sbjct: 124 RPALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPP 177
>gnl|CDD|221477 pfam12235, FXR1P_C, Fragile X-related 1 protein C terminal. This
domain family is found in eukaryotes, and is typically
between 126 and 160 amino acids in length. The family is
found in association with pfam05641, pfam00013. This
family is the C terminal region of the fragile X related
1 protein FXR1P. FXR1P contains two KH domains and a RGG
box that are characteristic motifs in RNA-binding
proteins as well as nuclear localization and export
signals. FXR1P is thought to regulate mRNA transport and
translation.
Length = 79
Score = 29.4 bits (66), Expect = 1.5
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 244 MRLPGQG---PPSGPGGTPVG----PCGGPVGGGGGGGIPSSVSSGNMNRRMNP 290
+R G G PPS PG G GG GGGG G +S+SS + NP
Sbjct: 15 LRQIGAGSRPPPSRPGDKEKGYLTDDSGGRGRGGGGKGNSNSISSVLDDPDSNP 68
Score = 29.4 bits (66), Expect = 1.5
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 625 MRLPGQG---PPSGPGGTPVG----PCGGPVGGGGGGGIPSSVSSGNMNRRMNP 671
+R G G PPS PG G GG GGGG G +S+SS + NP
Sbjct: 15 LRQIGAGSRPPPSRPGDKEKGYLTDDSGGRGRGGGGKGNSNSISSVLDDPDSNP 68
>gnl|CDD|99729 cd06408, PB1_NoxR, The PB1 domain is present in the Epichloe
festucae NoxR protein (NADPH oxidase regulator), a key
regulator of NADPH oxidase isoform, NoxA. NoxA is
essential for growth control of the fungal endophyte in
plant tissue in the process of symbiotic interaction
between a fungi and its plant host. The Epichloe
festucae p67(phox)-like regulator, NoxR, dispensable in
culture but essential in plants for the symbiotic
interaction. Plants infected with a noxR deletion
mutant show severe stunting and premature senescence,
whereas hyphae in the meristematic tissues show
increased branching leading to increased fungal
colonization of pseudostem and leaf blade tissue. The
PB1 domain is a modular domain mediating specific
protein-protein interactions which a play role in many
critical cell processes such as osteoclastogenesis,
angiogenesis, early cardiovascular development, and
cell polarity. A canonical PB1-PB1 interaction, which
involves heterodimerization of two PB1 domains, is
required for the formation of macromolecular signaling
complexes ensuring specificity and fidelity during
cellular signaling. The interaction between two PB1
domain depends on the type of PB1. There are three
types of PB1 domains: type I which contains an OPCA
motif, acidic aminoacid cluster, type II which contains
a basic cluster, and type I/II which contains both an
OPCA motif and a basic cluster. Interactions of PB1
domains with other protein domains have been described
as noncanonical PB1-interactions. The PB1 domain module
is conserved in amoebas, fungi, animals, and plants.
Length = 86
Score = 29.3 bits (66), Expect = 1.5
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 3 KLHYPTDVCGPLFEEELEFWGLDAP---KYKIESNFRSIIKHRDTQETLAVLDRLDLDTE 59
K+H D + + F + K+ + + IK +D + + + D+ DLD
Sbjct: 6 KVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLK--IKMKDDGDMITMGDQDDLDMA 63
Query: 60 KPSDEEMARKFGFEEAYFKGRLSWW 84
+ ARK G + G+L W
Sbjct: 64 IDTARSEARKQGSDM----GKLEIW 84
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 31.1 bits (70), Expect = 2.4
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 264 GGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARK 317
GG G GGG SV G RR P+ P+++ E + A
Sbjct: 433 GGGRSGPGGGSRSGSVGGGG--RRDGAGADGKPRPRRKPRVEGEADAAAAGAET 484
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.4 bits (71), Expect = 2.4
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 220 HTQARAKLPKKRRRVLP------------VEQPRGPMRLPGQGPPSGPGGTPVG----PC 263
H RA LP ++RR +Q R +P P P P P
Sbjct: 373 HHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA 432
Query: 264 G-GPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDT 306
P G P+ ++P + +D
Sbjct: 433 TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDA 476
Score = 31.1 bits (70), Expect = 3.0
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 601 HTQARAKLPKKRRRVLP------------VEQPRGPMRLPGQGPPSGPGGTPVG----PC 644
H RA LP ++RR +Q R +P P P P P
Sbjct: 373 HHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA 432
Query: 645 G-GPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKE 679
P G P+ ++P +
Sbjct: 433 TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDD 468
>gnl|CDD|234054 TIGR02904, spore_ysxE, spore coat protein YsxE. Members of this
family are homologs of the Bacillus subtilis spore coat
protein CotS. Members of this family, designated YsxE,
are found only in the family Bacillaceae, from among the
endospore-forming members of the Firmicutes branch of
the Bacteria. As a rule, the ysxE gene is found
immediately downstream of spoVID, a gene necessary for
spore coat assembly. The protein has been shown to be
part of the spore coat [Cellular processes, Sporulation
and germination].
Length = 309
Score = 30.9 bits (70), Expect = 2.5
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 27 PKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQK 86
P IE N +H + LA+L R + TE+ ++EE+ + +++ LS W+
Sbjct: 86 PWLDIERNEERNYQHESMFQELALLHRKTVKTERVTEEEL-------KKHYERTLSRWEN 138
Query: 87 TKPQLWSLFDEPYSSN 102
P+ F +
Sbjct: 139 -IPEGLEEFIVEAEAK 153
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 246 LPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKA-NNPKEMMG 301
G GP G + G GG S + N+ MN + NN ++++G
Sbjct: 8 FGGGGPRQASGQPGMMRGAATQAAGAAGGGGSFFA--NLASPMNLSGMLNNVQKVLG 62
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 627 LPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKA-NNPKEMMG 682
G GP G + G GG S + N+ MN + NN ++++G
Sbjct: 8 FGGGGPRQASGQPGMMRGAATQAAGAAGGGGSFFA--NLASPMNLSGMLNNVQKVLG 62
>gnl|CDD|220871 pfam10759, DUF2587, Protein of unknown function (DUF2587). This is
a bacterial family of proteins with no known function.
Length = 168
Score = 30.1 bits (68), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 215 AMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGG 270
A++ ARA+L + RRR LP + + G P G G G P G G
Sbjct: 121 ALFAQQMAARAQLEQMRRRALP-----PGVGIAPPGQPQGARG------GPPPGTG 165
Score = 30.1 bits (68), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 596 AMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGG 651
A++ ARA+L + RRR LP + + G P G G G P G G
Sbjct: 121 ALFAQQMAARAQLEQMRRRALP-----PGVGIAPPGQPQGARG------GPPPGTG 165
>gnl|CDD|223829 COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 350
Score = 30.7 bits (70), Expect = 2.7
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 34 NFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWS 93
N ++KH +E++ + L+ E S + L +K ++ +
Sbjct: 22 NLLLLLKHFGNKESILKIPLPQLEIEGLSSR-RLLAELARIELLELELEKIEKPGIKIIT 80
Query: 94 LFDEPY 99
L DE Y
Sbjct: 81 LGDEDY 86
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 30.7 bits (70), Expect = 2.9
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 515 LVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTT--VGYGDMAPKTYVGMFV 572
L+LG V +L ++ L + +T V +G++ PK+
Sbjct: 72 LLLGAVGEPALAAL-------LEPLLEALGLSAALSFAIITFLHVVFGELVPKSI----- 119
Query: 573 GALCALAGVLTIALPVPVIVSNFAM 597
A+ +AL + + F
Sbjct: 120 ----AIRNPEKVALLIAPPLRFFYR 140
Score = 29.2 bits (66), Expect = 8.3
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 151 IQANPHNDFNSIPLGLWWALVTMTT--VGYGDMAPKTYVGMFVGALCALAGVLTIALPVP 208
+ A ++ L + +T V +G++ PK+ A+ +AL +
Sbjct: 82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSI---------AIRNPEKVALLIA 132
Query: 209 VIVSNFAM 216
+ F
Sbjct: 133 PPLRFFYR 140
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 30.2 bits (68), Expect = 4.2
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 249 QGPPSGPGGTPVGPCGGPVGGGGGGGIPSSV 279
P +G G G G GG V
Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDV 666
Score = 30.2 bits (68), Expect = 4.2
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 630 QGPPSGPGGTPVGPCGGPVGGGGGGGIPSSV 660
P +G G G G GG V
Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDV 666
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 30.2 bits (68), Expect = 4.3
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 242 GPMRLPGQGPPSGPGGTPVGPCGGPVGG---GGGGGIPSSVSSGNMNRRMNPAKANNPKE 298
+ G GG GG GGGGG R PA A+ +E
Sbjct: 62 LVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRLFAPADAHADEE 121
Score = 30.2 bits (68), Expect = 4.3
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 623 GPMRLPGQGPPSGPGGTPVGPCGGPVGG---GGGGGIPSSVSSGNMNRRMNPAKANNPKE 679
+ G GG GG GGGGG R PA A+ +E
Sbjct: 62 LVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRLFAPADAHADEE 121
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 30.3 bits (69), Expect = 4.4
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 245 RLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKA 293
RL P G GG P GG G + ++ PA A
Sbjct: 386 RLQEGPPSPGGGGGG--PPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Score = 30.3 bits (69), Expect = 4.4
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 626 RLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKA 674
RL P G GG P GG G + ++ PA A
Sbjct: 386 RLQEGPPSPGGGGGG--PPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 30.0 bits (67), Expect = 4.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 239 QPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 274
QP ++P G +G G P G G GG
Sbjct: 649 QPSNLPQVPTSGQGNGTAGGEQPPSAPNGTGNGEGG 684
Score = 30.0 bits (67), Expect = 4.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 620 QPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 655
QP ++P G +G G P G G GG
Sbjct: 649 QPSNLPQVPTSGQGNGTAGGEQPPSAPNGTGNGEGG 684
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 30.1 bits (67), Expect = 5.0
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 230 KRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMN 289
K+ LP R P G G GG G GG GG P + S R+
Sbjct: 164 KKSTPLPSFDQGRQGRYPSGGGAFGGGGG--GGGGGERRSGGFRDSPGADDSDRWGRKKV 221
Query: 290 PAKANNPKE 298
+ E
Sbjct: 222 ETFGSAFGE 230
Score = 30.1 bits (67), Expect = 5.0
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 611 KRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMN 670
K+ LP R P G G GG G GG GG P + S R+
Sbjct: 164 KKSTPLPSFDQGRQGRYPSGGGAFGGGGG--GGGGGERRSGGFRDSPGADDSDRWGRKKV 221
Query: 671 PAKANNPKE 679
+ E
Sbjct: 222 ETFGSAFGE 230
>gnl|CDD|221868 pfam12938, M_domain, M domain of GW182.
Length = 238
Score = 29.5 bits (66), Expect = 5.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 246 LPGQGPPSGPGGTPVGPCGG-PVGGGGGGGIPSSVSSGNMN 285
L G PP G G G PVGGGGG G+ + N
Sbjct: 70 LSGLQPPPLGNGGGSGAGGPGPVGGGGGPGVAPNNIQPNAQ 110
Score = 29.5 bits (66), Expect = 5.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 627 LPGQGPPSGPGGTPVGPCGG-PVGGGGGGGIPSSVSSGNMN 666
L G PP G G G PVGGGGG G+ + N
Sbjct: 70 LSGLQPPPLGNGGGSGAGGPGPVGGGGGPGVAPNNIQPNAQ 110
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 30.1 bits (68), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 254 GPGGTPVGPCGGPVGGGGGGGIPSS 278
PGG P G GG GG G G +S
Sbjct: 620 MPGGMPGGMPGGMPGGAGPAGAGAS 644
Score = 30.1 bits (68), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 635 GPGGTPVGPCGGPVGGGGGGGIPSS 659
PGG P G GG GG G G +S
Sbjct: 620 MPGGMPGGMPGGMPGGAGPAGAGAS 644
Score = 29.4 bits (66), Expect = 8.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 248 GQGPPSG-PGGTPVG-PCGGPVGGGGGGGIPS 277
G G P G PGG P G P G G G P+
Sbjct: 617 GGGMPGGMPGGMPGGMPGGAGPAGAGASSGPT 648
Score = 29.4 bits (66), Expect = 8.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 629 GQGPPSG-PGGTPVG-PCGGPVGGGGGGGIPS 658
G G P G PGG P G P G G G P+
Sbjct: 617 GGGMPGGMPGGMPGGMPGGAGPAGAGASSGPT 648
Score = 29.4 bits (66), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 246 LPGQGPPSGPGGTPVGPCGGPVGGGGGGG 274
+PG P PGG P G GP G G G
Sbjct: 620 MPGGMPGGMPGGMPGG--AGPAGAGASSG 646
Score = 29.4 bits (66), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 627 LPGQGPPSGPGGTPVGPCGGPVGGGGGGG 655
+PG P PGG P G GP G G G
Sbjct: 620 MPGGMPGGMPGGMPGG--AGPAGAGASSG 646
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine
O-phosphatidyltransferase.
Length = 353
Score = 29.7 bits (67), Expect = 5.9
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 155 PHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 205
P N L LWW + T Y +GA C L+ L I +
Sbjct: 288 PRNPLIVYRLILWWLIAIPTIREYNSFLQDRKPVKKLGAFCWLS--LAICI 336
Score = 29.7 bits (67), Expect = 5.9
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 536 PHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIAL 586
P N L LWW + T Y +GA C L+ L I +
Sbjct: 288 PRNPLIVYRLILWWLIAIPTIREYNSFLQDRKPVKKLGAFCWLS--LAICI 336
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 30.0 bits (67), Expect = 6.1
Identities = 30/124 (24%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 236 PVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVS---SGNMNRRMNPAK 292
PV Q + +P PS P P GP P GG IPS + S + +PA
Sbjct: 416 PVPQVQTNQSMPQPPQPSVPS--PGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPAS 473
Query: 293 ANNPKE-MMGPKMDTEKPSDEEMARKFG-FEEAYFKGRLSWWQKTKPQLWSLFDEPYSSN 350
++ M+ P P + EE ++ + K + EP
Sbjct: 474 QRTIQQDMVSPGGPLNTPGQSSVNSPANPQEEQLYREKYKQLSK--------YIEPLRRM 525
Query: 351 SAKI 354
AKI
Sbjct: 526 IAKI 529
Score = 29.2 bits (65), Expect = 9.7
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 617 PVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVS---SGNMNRRMNPAK 673
PV Q + +P PS P P GP P GG IPS + S + +PA
Sbjct: 416 PVPQVQTNQSMPQPPQPSVPS--PGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPAS 473
Query: 674 ANNPKE-MMGP 683
++ M+ P
Sbjct: 474 QRTIQQDMVSP 484
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 29.4 bits (66), Expect = 7.5
Identities = 13/50 (26%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 233 RVLPVEQPRGPMRLP-GQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSS 281
R + P GPP G GG P P G G S
Sbjct: 684 RPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASP 733
Score = 29.4 bits (66), Expect = 7.5
Identities = 13/50 (26%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 614 RVLPVEQPRGPMRLP-GQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSS 662
R + P GPP G GG P P G G S
Sbjct: 684 RPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASP 733
>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 28.9 bits (65), Expect = 7.8
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 33/138 (23%)
Query: 494 LKILMQTFRASAKELTLLVFFLVL------GIVIFASLVYYA-ERIQANPHNDFNSIP-- 544
L ILM F L+ +F + G++I A+ + YA + ++ + SIP
Sbjct: 152 LAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPAR 211
Query: 545 -----------LGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVS 593
L + + +GY + C+L +P+ VI+
Sbjct: 212 FGEKKAIRIASANLIASAIAYLLIGY--FVSNKKIFYL----CSL-------VPLTVILK 258
Query: 594 NFAMYYSHTQARAKLPKK 611
Y + ++ L +K
Sbjct: 259 TIKHYSLIDKKKSTLEQK 276
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 29.3 bits (66), Expect = 7.9
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 33/150 (22%)
Query: 445 VIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSG---------LK 495
V+ +A S + +++ L NA +LE S IR+++ F +
Sbjct: 168 VLSLLARKSRKLSRRVREALGEL-NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRR 226
Query: 496 ILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMT 555
++ R A L + L+ + L G + L
Sbjct: 227 ANLRASRLEA--LLAPLMLLLSSLGTVLVLAL------------------GGFLVLSGSL 266
Query: 556 TVGYGDMAP-KTYVGMFVGALCALAGVLTI 584
TV G +A Y+ + + L V+++
Sbjct: 267 TV--GALAAFILYLLRLLTPILQLGEVVSL 294
>gnl|CDD|223866 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 29.2 bits (66), Expect = 7.9
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 509 TLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYV 568
L + ++L I++ L+ + + L L T + + P +
Sbjct: 16 FLAILLVLLAILLIIDLLELLNGKAVDGRYPALDV--LLLLLLSLPTLLPL--VLP---L 68
Query: 569 GMFVGALCAL 578
+ + AL L
Sbjct: 69 ALLIAALLTL 78
>gnl|CDD|115849 pfam07220, DUF1420, Protein of unknown function (DUF1420). This
family consists of several hypothetical putative
lipoproteins which seem to be found specifically in the
bacterium Leptospira interrogans. Members of this family
are typically around 670 resides in length and their
function is unknown.
Length = 672
Score = 29.5 bits (66), Expect = 8.2
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 425 ILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRL 484
I++ F+SSP + + + I SF I LLL+ F+ + + L F +I I+ +
Sbjct: 268 IIIAFLSSPVLVFLVSSPKPQLLQIGMTSFAITLLLEIFSKAKTDKNKLFAFILICILIM 327
Query: 485 --------FKLTRHSSGL--KILMQTFRASAKELTLLVFFLVLGIVIFASLVY 527
F L+ GL L+ + R L + +FF +L +IF ++ +
Sbjct: 328 SATQAKFSFFLSAFLIGLCSIFLLGSIRLFFYGLLIGIFFFIL--IIFPAIFW 378
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.4 bits (66), Expect = 8.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 222 QARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGP 266
Q +LP+ ++VLP P P QGPP P G P P G P
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHP 211
Score = 29.4 bits (66), Expect = 8.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 603 QARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGP 647
Q +LP+ ++VLP P P QGPP P G P P G P
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHP 211
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38. This family
contains several Gp38 proteins from T-even-like phages.
Gp38, together with a second phage protein, gp57,
catalyzes the organisation of gp37 but is absent from
the phage particle. Gp37 is responsible for receptor
recognition.
Length = 261
Score = 29.0 bits (65), Expect = 8.3
Identities = 13/44 (29%), Positives = 14/44 (31%)
Query: 240 PRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGN 283
G L G SG G G GG VG GG +
Sbjct: 192 SGGNASLTAPGGGSGTGSAYGGGNGGNVGAAGGRAWGGNGYEYG 235
Score = 29.0 bits (65), Expect = 8.3
Identities = 13/44 (29%), Positives = 14/44 (31%)
Query: 621 PRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGN 664
G L G SG G G GG VG GG +
Sbjct: 192 SGGNASLTAPGGGSGTGSAYGGGNGGNVGAAGGRAWGGNGYEYG 235
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 29.6 bits (67), Expect = 8.4
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 299 MMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLF 343
+GP+M K + E M EEA +KG + P ++F
Sbjct: 901 TLGPEM---KSTGEVMGIDKDLEEALYKGYEASDLH-IPSYGTIF 941
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 29.3 bits (66), Expect = 8.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 497 LMQTFRASAKELTLLVFFLVLGIVIFASLVYY 528
S K+L +LV +L IVIF + Y
Sbjct: 156 YPPAVS-SLKDLNILVILALLLIVIFVLFLIY 186
>gnl|CDD|212123 cd10812, GH38N_AMII_ScAms1_like, N-terminal catalytic domain of
yeast vacuolar alpha-mannosidases and similar proteins;
glycoside hydrolase family 38 (GH38). The family is
represented by Saccharomyces cerevisiae
alpha-mannosidase (Ams1) and its eukaryotic homologs.
Ams1 functions as a second resident vacuolar hydrolase
in S. cerevisiae. It aids in recycling macromolecular
components of the cell through hydrolysis of terminal,
non-reducing alpha-d-mannose residues. Ams1 forms an
oligomer in the cytoplasm and retains its oligomeric
form during the import process. It utilizes both the Cvt
(nutrient-rich conditions) and autophagic (starvation
conditions) pathways for biosynthetic delivery to the
vacuole. Mutants in either pathway are defective in Ams1
import. Members in this family show high sequence
similarity with rat ER/cytosolic alpha-mannosidase
Man2C1.
Length = 258
Score = 28.9 bits (65), Expect = 8.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 304 MDTEKPSDEEMARKFGFEEAYFKGR 328
DT PS E +AR+F + + YF+ R
Sbjct: 85 NDTNMPSGESLARQFLYGQRYFESR 109
>gnl|CDD|220660 pfam10261, Scs3p, Inositol phospholipid synthesis and
fat-storage-inducing TM. This is a family of
transmembrane proteins which are variously annotated as
possibly being inositol phospholipid synthesis protein
and fat-storage-inducing. The members are conserved from
yeasts to humans and are localised to the endoplasmic
reticulum where they are involved in triglyceride lipid
droplet formation.
Length = 223
Score = 28.5 bits (64), Expect = 8.9
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 164 LGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVL 201
LGLW ++ MT + + K +G L G
Sbjct: 188 LGLWVWMLLMTAIYFHTFPEK-----LLGLLFGYLGWY 220
Score = 28.5 bits (64), Expect = 8.9
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 545 LGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVL 582
LGLW ++ MT + + K +G L G
Sbjct: 188 LGLWVWMLLMTAIYFHTFPEK-----LLGLLFGYLGWY 220
>gnl|CDD|223941 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 606
Score = 29.2 bits (66), Expect = 9.1
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 25/68 (36%)
Query: 514 FLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVG 573
FL G VI A+ ++ GL + P T+V +G
Sbjct: 339 FLSAGSVIHATGTRDIRKLG------------GLRKKM------------PITFVAFLIG 374
Query: 574 ALCALAGV 581
AL ALAGV
Sbjct: 375 AL-ALAGV 381
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 28.9 bits (65), Expect = 9.1
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 242 GPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 274
G G G G G G G GGG GGG
Sbjct: 17 GGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49
Score = 28.9 bits (65), Expect = 9.1
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 623 GPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGG 655
G G G G G G G GGG GGG
Sbjct: 17 GGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 28.3 bits (64), Expect = 9.4
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 508 LTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY 559
+ +L+ LV+ +++ + I LG+ +T+ +GY
Sbjct: 142 IIVLLILLVISLILSENYFI------------LLLIVLGILLQSITLLPIGY 181
>gnl|CDD|217903 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-terminal
acetyltransferase. NatC N(alpha)-terminal
acetyltransferases contains Mak10p, Mak31p and Mak3p
subunits. All three subunits are associated with each
other to form the active complex.
Length = 167
Score = 28.1 bits (63), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 298 EMMGPKMDT---EKPSDEEMARKFGFEEAY 324
E+M PKMD+ E +E F EEAY
Sbjct: 21 EIMDPKMDSGMIELTEEEP----FDLEEAY 46
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 29.1 bits (65), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 253 SGPGGTPVGPCGGPVGGGGGGG 274
S G G GG GGGGGG
Sbjct: 573 SSSSGGGGGFSGGGSGGGGGGA 594
Score = 29.1 bits (65), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 634 SGPGGTPVGPCGGPVGGGGGGG 655
S G G GG GGGGGG
Sbjct: 573 SSSSGGGGGFSGGGSGGGGGGA 594
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,449,611
Number of extensions: 3648867
Number of successful extensions: 5421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5245
Number of HSP's successfully gapped: 149
Length of query: 695
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 591
Effective length of database: 6,324,786
Effective search space: 3737948526
Effective search space used: 3737948526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)