RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13136
(695 letters)
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 89.2 bits (221), Expect = 5e-22
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 506 KELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPK 565
+ LV+ ++ + L AER P + P LWW++ T TTVGYGD+ P
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
Query: 566 TYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
T G V + +AG+ + L + + F
Sbjct: 64 TLWGRCVAVVVMVAGITSFGLVTAALATWFV 94
Score = 71.9 bits (176), Expect = 5e-16
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
L AER P + P LWW++ T TTVGYGD+ P T G V + +AG+ +
Sbjct: 24 YLAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITS 81
Query: 203 IALPVPVIVSNFA 215
L + + F
Sbjct: 82 FGLVTAALATWFV 94
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 78.1 bits (192), Expect = 5e-18
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 484 LFKLTRHSSG-LKILMQTF-RASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFN 541
+ +L G L S L+ L L +L Y A +
Sbjct: 1 ITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACG-DVIENARPG 59
Query: 542 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
S ++++ TM T+GYG + P + + L AL G+L +A+ +I + F
Sbjct: 60 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114
Score = 62.7 bits (152), Expect = 1e-12
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
+L Y A + S ++++ TM T+GYG + P + + L AL G+L
Sbjct: 43 ALAYLACG-DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLG 101
Query: 203 IALPVPVIVSNFA 215
+A+ +I + F
Sbjct: 102 LAVAASLIYARFT 114
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 75.4 bits (185), Expect = 5e-17
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 491 SSGLKILMQTF-RASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWW 549
+S + L + S + L + +L+Y + ++
Sbjct: 10 ASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGD-APIANQSPPGFVGAFFF 68
Query: 550 ALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
++ T+ TVGYGDM P+T + L G+ IAL ++ + FA
Sbjct: 69 SVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115
Score = 63.5 bits (154), Expect = 6e-13
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLT 202
+L+Y + ++++ T+ TVGYGDM P+T + L G+
Sbjct: 44 ALLYQLGD-APIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSG 102
Query: 203 IALPVPVIVSNFA 215
IAL ++ + FA
Sbjct: 103 IALSTGLVFARFA 115
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 69.0 bits (169), Expect = 3e-15
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 510 LLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVG 569
+ LVL ++I+ + ++ + S + L+W VT+ TVGYGD +P T +G
Sbjct: 3 TRILLLVLAVIIYGTAGFHFI--------EGESWTVSLYWTFVTIATVGYGDYSPSTPLG 54
Query: 570 MFVGALCALAGVLTIALPVPVIVS 593
M+ + G+ T A+ V ++
Sbjct: 55 MYFTVTLIVLGIGTFAVAVERLLE 78
Score = 58.6 bits (142), Expect = 1e-11
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 161 SIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVS 212
S + L+W VT+ TVGYGD +P T +GM+ + G+ T A+ V ++
Sbjct: 27 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 78
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 68.3 bits (167), Expect = 3e-15
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 506 KELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY 559
+ LV+ ++ + L AER P + P LWWA T TTVGY
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAER--GAPGAQLITYPRALWWACETATTVGY 57
Score = 49.5 bits (118), Expect = 1e-08
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 143 SLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGY 178
L AER P + P LWWA T TTVGY
Sbjct: 24 YLAVLAER--GAPGAQLITYPRALWWACETATTVGY 57
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 68.8 bits (168), Expect = 2e-14
Identities = 13/156 (8%), Positives = 46/156 (29%), Gaps = 32/156 (20%)
Query: 353 KIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFY 412
++ + + +S++ ++ + +
Sbjct: 6 PLVELGVSYAALLSVIVVVVEYTMQL------------------------SGEYLVRLYL 41
Query: 413 IECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADI 472
++ + + R S ++K + + A + + L++ +
Sbjct: 42 VDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE------GHLAG 93
Query: 473 LEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKEL 508
L F ++R++R ++ S + +A +L
Sbjct: 94 LGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 37.2 bits (86), Expect = 9e-04
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGLD 25
+GKLHYPTDVCGPLFEEELEFWGLD
Sbjct: 63 SGKLHYPTDVCGPLFEEELEFWGLD 87
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 36.4 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 1 TGKLHYPTDVCGPLFEEELEFWGLD 25
TGKLHYP C ++EEL F+GL
Sbjct: 60 TGKLHYPRHECISAYDEELAFFGLI 84
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
hare (Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 35.6 bits (82), Expect = 0.003
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 2 GKLHYPTDVCGPLFEEELEFWGLD 25
G+L P +V +F EE++F+ L
Sbjct: 64 GRLRRPVNVPLDVFSEEIKFYELG 87
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 29.7 bits (65), Expect = 1.7
Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 11/243 (4%)
Query: 332 WQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTT 391
W + PQL + P S+ K + ++ +IC I L+ + + I +
Sbjct: 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE- 184
Query: 392 HNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIAT 451
S ++ + + + +M+ + +C + V + +
Sbjct: 185 -EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243
Query: 452 L-SFYIDLLLQKFASHLENADILEFFSIIRIMRLF------KLTRHSSGLKILMQTFRAS 504
+ S Y + L I S I + L + L I
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303
Query: 505 AKELTLLVFFLVLGIV--IFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDM 562
+ F G + + L + N +D + L+ + T D+
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363
Query: 563 APK 565
P
Sbjct: 364 VPH 366
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 28.8 bits (64), Expect = 2.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 452 LSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKL 487
L+ Y D LL+K + + E A++ + + ++M +FK
Sbjct: 12 LARYCDSLLKKSSKNPEEAELEDT--LNQVMVVFKY 45
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 27.6 bits (61), Expect = 5.3
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 452 LSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKL 487
++ ++D L+ + ++ + +IM LF+
Sbjct: 7 IAKHVDSKLRAGNKEATDEELERT--LDKIMILFRF 40
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 27.3 bits (60), Expect = 6.5
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 28 KYKIESNFRSIIK--HRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQ 85
Y+ F I+ D + + + + + + + FG +E + R WW
Sbjct: 77 NYQYNKEFCKDIRWGLGDFGDIIMGTNMEGIGYSQVVENNLRSIFGTDEKAKQDRKQWWN 136
Query: 86 KTKPQLW 92
++K +W
Sbjct: 137 ESKEHIW 143
>d2a2la1 d.110.9.1 (A:4-145) DhaI homolog {Klebsiella pneumoniae
[TaxId: 573]}
Length = 142
Score = 26.6 bits (58), Expect = 6.5
Identities = 11/45 (24%), Positives = 13/45 (28%)
Query: 233 RVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 277
V P + G Q GG PV +G G G
Sbjct: 81 AVQPGQSLYGLQLTNQQRIIIFGGGLPVIFNEQVIGAVGVSGGTV 125
Score = 26.6 bits (58), Expect = 6.5
Identities = 11/45 (24%), Positives = 13/45 (28%)
Query: 614 RVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPS 658
V P + G Q GG PV +G G G
Sbjct: 81 AVQPGQSLYGLQLTNQQRIIIFGGGLPVIFNEQVIGAVGVSGGTV 125
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia
coli [TaxId: 562]}
Length = 118
Score = 26.4 bits (58), Expect = 6.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 219 SHTQARAKLPKKRRRVLP 236
S+ QA LP+++R++L
Sbjct: 99 SYQQAVNLLPEEKRKLLV 116
Score = 26.4 bits (58), Expect = 6.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 600 SHTQARAKLPKKRRRVLP 617
S+ QA LP+++R++L
Sbjct: 99 SYQQAVNLLPEEKRKLLV 116
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (56), Expect = 7.4
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 23 GLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLS 82
+YKI ++ R +DR L+ S EE + FG + F
Sbjct: 11 NWGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHL-SQEEFYQVFGMTISEFDRLAL 69
Query: 83 WWQKTKPQLWSLFDEPYS 100
W + + LF P S
Sbjct: 70 WKRNELKKQARLFSGPSS 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,727,296
Number of extensions: 132293
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 29
Length of query: 695
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 603
Effective length of database: 1,144,436
Effective search space: 690094908
Effective search space used: 690094908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)