BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13137
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 132 bits (332), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 3/87 (3%)
Query: 56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
MDAENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ+
Sbjct: 1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
+NYYR +L P VC + EL
Sbjct: 61 INYYRSGKL---HYPTDVCGPLFEEEL 84
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L +E Y P +YFFDR P +F +LN+YR
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGS-SERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 61 GKLHY---PRHECISAYDEEL 78
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L TE ++ EYFFDR P VF VLN+YR
Sbjct: 15 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 74 GKLHY---PRYECISAYDDEL 91
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L TE ++ EYFFDR P VF VLN+YR
Sbjct: 37 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 96 GKL---HYPRYECISAYDDEL 113
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 57.4 bits (137), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
++ RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 117 NYYR 120
YY+
Sbjct: 109 YYYQ 112
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 57.4 bits (137), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
++ RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 117 NYYR 120
YY+
Sbjct: 109 YYYQ 112
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L TE ++ EYFFDR P VF VLN+YR
Sbjct: 43 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 101
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 102 GKL---HYPRYECISAYDDEL 119
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L YY+
Sbjct: 34 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 93
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 56.6 bits (135), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L YY+
Sbjct: 34 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 93
>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
Length = 99
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
+
Sbjct: 61 Q 61
>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|E Chain E, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|F Chain F, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|G Chain G, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|H Chain H, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
Length = 87
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
+
Sbjct: 61 Q 61
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 103
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L YY+
Sbjct: 12 RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 71
>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 95
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 3 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 62
>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|B Chain B, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|C Chain C, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|D Chain D, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|E Chain E, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|F Chain F, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|G Chain G, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|H Chain H, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
Length = 87
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
RVV+N+ G+R E TL + P T L + + +DP+ NEYFFDR+ F +L YY
Sbjct: 1 ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
+
Sbjct: 61 Q 61
>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1
Domain
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1
Domain
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1
Domain
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFAQVLNY 118
V LNVGG T + TL + P + L RL +A + D +E Y DR P F VLNY
Sbjct: 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 73
Query: 119 YRVFRL 124
R +L
Sbjct: 74 LRHGKL 79
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFAQVLNY 118
V LNVGG T + TL + P + L RL +A + D +E Y DR P F VLNY
Sbjct: 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 67
Query: 119 YRVFRL 124
R +L
Sbjct: 68 LRHGKL 73
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 225 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 267
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 96 YDPVLNEYFFDRHPGVFAQ------VLNYYRVFRLPLGF-KPW 131
YD L E F D+HPG F+Q V + F+ L + PW
Sbjct: 221 YDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPW 263
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 71 HETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
H +Y TLKK ++ +A+ + PV+N + R G+ A +L +
Sbjct: 36 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEF 83
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
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pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
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pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
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pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
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pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
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pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 71 HETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
H +Y TLKK ++ +A+ + PV+N + R G+ A +L +
Sbjct: 45 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEF 92
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 71 HETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
H +Y TLKK ++ +A+ + PV+N + R G+ A +L +
Sbjct: 44 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEF 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,773,410
Number of Sequences: 62578
Number of extensions: 117930
Number of successful extensions: 311
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 31
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)