Query psy13137
Match_columns 164
No_of_seqs 120 out of 931
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 20:31:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02214 BTB_2: BTB/POZ domain 99.9 6.7E-26 1.4E-30 162.6 5.3 85 62-149 1-88 (94)
2 KOG3713|consensus 99.9 1.7E-24 3.7E-29 196.0 7.8 90 57-149 28-126 (477)
3 KOG2715|consensus 99.8 4E-21 8.7E-26 155.8 3.2 86 59-148 20-108 (210)
4 KOG2714|consensus 99.8 3.3E-20 7.2E-25 166.4 6.8 88 57-147 8-97 (465)
5 KOG4390|consensus 99.8 3.4E-20 7.3E-25 166.3 2.7 85 58-146 38-122 (632)
6 KOG1665|consensus 99.7 1.3E-18 2.8E-23 146.9 5.7 91 57-150 6-99 (302)
7 KOG2716|consensus 99.7 2E-18 4.3E-23 144.9 6.7 86 58-147 3-90 (230)
8 KOG2723|consensus 99.7 3.6E-18 7.9E-23 142.6 4.8 89 58-149 7-97 (221)
9 KOG1545|consensus 99.7 8.6E-18 1.9E-22 149.5 5.7 89 56-147 57-146 (507)
10 KOG3840|consensus 98.6 3.8E-08 8.3E-13 86.9 4.0 87 56-145 92-182 (438)
11 smart00225 BTB Broad-Complex, 98.4 2.8E-07 6.1E-12 61.6 4.1 81 62-148 2-83 (90)
12 PHA03098 kelch-like protein; P 93.7 0.07 1.5E-06 48.4 3.8 83 58-149 10-92 (534)
13 PHA02790 Kelch-like protein; P 87.9 0.57 1.2E-05 42.7 3.6 79 63-148 25-106 (480)
14 PF00651 BTB: BTB/POZ domain; 87.5 0.32 6.9E-06 34.2 1.4 84 60-149 11-98 (111)
15 PHA02713 hypothetical protein; 85.0 1.1 2.4E-05 41.7 4.0 81 61-150 27-111 (557)
16 PF06375 BLVR: Bovine leukaemi 77.0 0.77 1.7E-05 36.9 0.0 11 145-155 82-92 (154)
17 PF15002 ERK-JNK_inhib: ERK an 69.8 4 8.7E-05 34.2 2.6 26 135-160 173-198 (207)
18 KOG4441|consensus 69.5 5.2 0.00011 37.7 3.6 84 60-149 37-121 (571)
19 PF02519 Auxin_inducible: Auxi 50.5 34 0.00073 25.3 4.4 59 57-119 36-99 (100)
20 PF07818 HCNGP: HCNGP-like pro 50.5 28 0.0006 25.7 3.9 47 107-156 41-95 (96)
21 PF12926 MOZART2: Mitotic-spin 46.9 6.2 0.00013 29.1 -0.1 18 106-123 40-57 (88)
22 KOG0783|consensus 43.7 15 0.00033 37.3 2.0 71 54-125 553-635 (1267)
23 PLN03220 uncharacterized prote 38.4 96 0.0021 23.6 5.2 56 58-116 36-100 (105)
24 PLN03219 uncharacterized prote 34.7 1.1E+02 0.0024 23.3 5.0 58 58-118 40-104 (108)
25 PF15333 TAF1D: TATA box-bindi 32.9 25 0.00054 29.8 1.4 7 145-151 58-64 (217)
26 KOG2422|consensus 31.2 15 0.00033 35.6 -0.1 15 146-160 91-105 (665)
27 PF09907 DUF2136: Uncharacteri 26.1 58 0.0013 23.0 2.1 16 59-74 36-51 (76)
28 PTZ00148 40S ribosomal protein 25.6 39 0.00084 28.5 1.3 14 140-153 191-204 (205)
29 COG4680 Uncharacterized protei 24.6 66 0.0014 24.1 2.3 19 57-75 52-70 (98)
30 PF05833 FbpA: Fibronectin-bin 23.7 26 0.00057 31.4 0.0 7 137-143 431-437 (455)
31 TIGR03130 malonate_delta malon 22.2 63 0.0014 24.2 1.8 20 9-28 50-69 (98)
No 1
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.92 E-value=6.7e-26 Score=162.59 Aligned_cols=85 Identities=38% Similarity=0.584 Sum_probs=73.1
Q ss_pred EEEEeCCeEEEeeHHHHhcCCCccccchhhh--cCCCCCCCCeEEEecCCCChHHHhccccC-CCCCCCCCCCCCCHHHH
Q psy13137 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEA--LGNYDPVLNEYFFDRHPGVFAQVLNYYRV-FRLPLGFKPWTVCMASY 138 (164)
Q Consensus 62 I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~--~~~~~~~~~eyFIDRDp~~F~~ILnyLRt-G~L~~~~~P~~v~~~~f 138 (164)
|+|||||++|+|+++||.++|+|+|+.+++. ....++++++|||||||.+|++||+|||+ |.++ .|.+.+...|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~---~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLP---IPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB------TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccC---CCCchhHHHH
Confidence 7899999999999999999999999999974 34566799999999999999999999999 7888 8889999999
Q ss_pred HHHHHHHHHhh
Q psy13137 139 TSELLKKKKKK 149 (164)
Q Consensus 139 ~eEl~y~~~~~ 149 (164)
.+|++||....
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999998765
No 2
>KOG3713|consensus
Probab=99.90 E-value=1.7e-24 Score=195.96 Aligned_cols=90 Identities=53% Similarity=0.845 Sum_probs=84.5
Q ss_pred CCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhh---------hcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCC
Q psy13137 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTE---------ALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLG 127 (164)
Q Consensus 57 ~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~---------~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~ 127 (164)
..++.|+|||||++|++.++||.++|.|+|++|.. .|++||+.++||||||+|.+|.+||||||+|+||
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH-- 105 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLH-- 105 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeec--
Confidence 45679999999999999999999999999999875 2889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh
Q psy13137 128 FKPWTVCMASYTSELLKKKKKK 149 (164)
Q Consensus 128 ~~P~~v~~~~f~eEl~y~~~~~ 149 (164)
+|.++|+..|.+||+||.+..
T Consensus 106 -~p~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 106 -VPADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred -cccccchHHHHHHHHHhCCCh
Confidence 999999999999999998754
No 3
>KOG2715|consensus
Probab=99.82 E-value=4e-21 Score=155.78 Aligned_cols=86 Identities=30% Similarity=0.271 Sum_probs=77.8
Q ss_pred CCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcC---CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137 59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG---NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCM 135 (164)
Q Consensus 59 ~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~---~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~ 135 (164)
+.+|+|||||+.|.|+++||.+.|.|+|+++++... .-.+++|+|||||||..|..||||||+|+|. +.. +..
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv---l~~-l~e 95 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV---LNK-LSE 95 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh---hhh-hhh
Confidence 489999999999999999999999999999997532 2346999999999999999999999999999 666 999
Q ss_pred HHHHHHHHHHHHh
Q psy13137 136 ASYTSELLKKKKK 148 (164)
Q Consensus 136 ~~f~eEl~y~~~~ 148 (164)
+..++|++||..-
T Consensus 96 eGvL~EAefyn~~ 108 (210)
T KOG2715|consen 96 EGVLEEAEFYNDP 108 (210)
T ss_pred hccchhhhccCCh
Confidence 9999999999864
No 4
>KOG2714|consensus
Probab=99.81 E-value=3.3e-20 Score=166.45 Aligned_cols=88 Identities=30% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCCeEEEEeCCeEEEeeHHHHhcCC-Cccccchhhh-cCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCC
Q psy13137 57 DAENRVVLNVGGIRHETYKATLKKIP-ATRLSRLTEA-LGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVC 134 (164)
Q Consensus 57 ~~~~~I~LNVGG~~F~T~~sTL~r~P-~S~L~~l~~~-~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~ 134 (164)
.++++|+|||||++|+|+++||+..| ||+|+.|++. .....++.+++||||||++|..||||||||.|+ +|..+.
T Consensus 8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~---~~g~~~ 84 (465)
T KOG2714|consen 8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD---ASGVFP 84 (465)
T ss_pred CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC---CccCch
Confidence 46799999999999999999999998 9999999863 223457889999999999999999999999999 777777
Q ss_pred HHHHHHHHHHHHH
Q psy13137 135 MASYTSELLKKKK 147 (164)
Q Consensus 135 ~~~f~eEl~y~~~ 147 (164)
...+.+|+.||-.
T Consensus 85 ~~llhdEA~fYGl 97 (465)
T KOG2714|consen 85 ERLLHDEAMFYGL 97 (465)
T ss_pred hhhhhhhhhhcCc
Confidence 7778889999953
No 5
>KOG4390|consensus
Probab=99.79 E-value=3.4e-20 Score=166.34 Aligned_cols=85 Identities=41% Similarity=0.652 Sum_probs=78.1
Q ss_pred CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137 58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS 137 (164)
Q Consensus 58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~ 137 (164)
.++.+.|||.|++|+|-+.||.+||+++|+.-.. .-.|+.+++||||||||++|++||||||+|+|| .|..-|+..
T Consensus 38 ~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEk-eFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLH---yPR~ECi~A 113 (632)
T KOG4390|consen 38 QDELLVLNVSGRRFETWKNTLERYPDTLLGSSEK-EFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLH---YPRHECISA 113 (632)
T ss_pred cCcEEEEeccccchhHHHhHHHhCchhhhCCcch-heeecCCcccccccCChHHHHHHHHHhhcCccc---CchHHHHHH
Confidence 6789999999999999999999999999997433 236889999999999999999999999999999 999999999
Q ss_pred HHHHHHHHH
Q psy13137 138 YTSELLKKK 146 (164)
Q Consensus 138 f~eEl~y~~ 146 (164)
+-|||.||-
T Consensus 114 yDeELaF~G 122 (632)
T KOG4390|consen 114 YDEELAFYG 122 (632)
T ss_pred hhhhhhHhc
Confidence 999998874
No 6
>KOG1665|consensus
Probab=99.75 E-value=1.3e-18 Score=146.90 Aligned_cols=91 Identities=23% Similarity=0.253 Sum_probs=80.5
Q ss_pred CCCCeEEEEeCCeEEEeeHHHHh-cCCCccccchhhhcC--CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCC
Q psy13137 57 DAENRVVLNVGGIRHETYKATLK-KIPATRLSRLTEALG--NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTV 133 (164)
Q Consensus 57 ~~~~~I~LNVGG~~F~T~~sTL~-r~P~S~L~~l~~~~~--~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v 133 (164)
..+..|+|||||+.|+|+.+||. +-|||||..||+... ...++.|.|||||+|.+|++||||||+|+++ .-.++
T Consensus 6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~---~~s~i 82 (302)
T KOG1665|consen 6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP---SLSDI 82 (302)
T ss_pred ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCcee---ecCCc
Confidence 35688999999999999999997 679999999997432 2346899999999999999999999999999 78899
Q ss_pred CHHHHHHHHHHHHHhhH
Q psy13137 134 CMASYTSELLKKKKKKK 150 (164)
Q Consensus 134 ~~~~f~eEl~y~~~~~~ 150 (164)
....+++|+.||++=-=
T Consensus 83 ~~lgvLeeArff~i~sL 99 (302)
T KOG1665|consen 83 DCLGVLEEARFFQILSL 99 (302)
T ss_pred cHHHHHHHhhHHhhHhH
Confidence 99999999999998543
No 7
>KOG2716|consensus
Probab=99.74 E-value=2e-18 Score=144.91 Aligned_cols=86 Identities=26% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcC-CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHH
Q psy13137 58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG-NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMA 136 (164)
Q Consensus 58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~-~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~ 136 (164)
.++.|+|||||+.|.|+.+||++ -+++|..|++... ...++.|.|||||+|.+|+.||||||+|.+. +|++--..
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk-~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~---LPe~~kel 78 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTK-FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVD---LPESEKEL 78 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhh-hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhccccc---CccchHHH
Confidence 45889999999999999999999 5789999987532 2345789999999999999999999999999 99987775
Q ss_pred -HHHHHHHHHHH
Q psy13137 137 -SYTSELLKKKK 147 (164)
Q Consensus 137 -~f~eEl~y~~~ 147 (164)
.++.|++||.-
T Consensus 79 ~El~~EA~fYlL 90 (230)
T KOG2716|consen 79 KELLREAEFYLL 90 (230)
T ss_pred HHHHHHHHHhhH
Confidence 69999999863
No 8
>KOG2723|consensus
Probab=99.72 E-value=3.6e-18 Score=142.61 Aligned_cols=89 Identities=29% Similarity=0.301 Sum_probs=79.6
Q ss_pred CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhh-cCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCH-
Q psy13137 58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEA-LGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCM- 135 (164)
Q Consensus 58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~-~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~- 135 (164)
-+++|.|||||+.|+|+..||.++|+|+|++|++. .....+..+.||||||+.+|++||+|||+-.+. +|++...
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~---lpe~f~e~ 83 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALL---LPEDFAEV 83 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccc---cchhhhhH
Confidence 45899999999999999999999999999999974 233457889999999999999999999998788 8999885
Q ss_pred HHHHHHHHHHHHhh
Q psy13137 136 ASYTSELLKKKKKK 149 (164)
Q Consensus 136 ~~f~eEl~y~~~~~ 149 (164)
..+.+|++||+...
T Consensus 84 ~~L~rEA~f~~l~~ 97 (221)
T KOG2723|consen 84 ERLVREAEFFQLEA 97 (221)
T ss_pred HHHHHHHHHHcccc
Confidence 57999999999874
No 9
>KOG1545|consensus
Probab=99.71 E-value=8.6e-18 Score=149.52 Aligned_cols=89 Identities=35% Similarity=0.543 Sum_probs=83.7
Q ss_pred CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCC-CCCCCCCCCCCC
Q psy13137 56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVF-RLPLGFKPWTVC 134 (164)
Q Consensus 56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG-~L~~~~~P~~v~ 134 (164)
....++|+|||.|-+|+|..+||.++|+|+|+.-..+...+|+..+||||||+...|+.||.||++| +|. +|.+|+
T Consensus 57 ~~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlr---RPvnVP 133 (507)
T KOG1545|consen 57 SCCCERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR---RPVNVP 133 (507)
T ss_pred cccccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceec---CCcccc
Confidence 3456999999999999999999999999999999888888999999999999999999999999975 788 999999
Q ss_pred HHHHHHHHHHHHH
Q psy13137 135 MASYTSELLKKKK 147 (164)
Q Consensus 135 ~~~f~eEl~y~~~ 147 (164)
.+.|.+|+.|||-
T Consensus 134 lDiF~eEirFyql 146 (507)
T KOG1545|consen 134 LDIFLEEIRFYQL 146 (507)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999984
No 10
>KOG3840|consensus
Probab=98.59 E-value=3.8e-08 Score=86.91 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=75.0
Q ss_pred CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCC--CCCCCeEEEe--cCCCChHHHhccccCCCCCCCCCCC
Q psy13137 56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNY--DPVLNEYFFD--RHPGVFAQVLNYYRVFRLPLGFKPW 131 (164)
Q Consensus 56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~--~~~~~eyFID--RDp~~F~~ILnyLRtG~L~~~~~P~ 131 (164)
.-+.++|.+-|.|++|.++...|+..|+|+++.|+...-++ -.+.|||-+. -.-.+|+.||+||.+|.+. ||+
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iR---CP~ 168 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMR---CPS 168 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCcee---CCC
Confidence 34679999999999999999999999999999998653322 2488999774 4567899999999999999 999
Q ss_pred CCCHHHHHHHHHHH
Q psy13137 132 TVCMASYTSELLKK 145 (164)
Q Consensus 132 ~v~~~~f~eEl~y~ 145 (164)
+|++..+.|.++|-
T Consensus 169 ~vSvpELrEACDYL 182 (438)
T KOG3840|consen 169 SVSVSELREACDYL 182 (438)
T ss_pred CCchHHHHhhcceE
Confidence 99999999998884
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.43 E-value=2.8e-07 Score=61.58 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeE-EEecCCCChHHHhccccCCCCCCCCCCCCCCHHHHHH
Q psy13137 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEY-FFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTS 140 (164)
Q Consensus 62 I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~ey-FIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~e 140 (164)
|.|+|||..|.+.+..|...+ +++..++.... .......+ +.|.++..|..||+|+.+|.+. +|.+ ....+.+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s-~~f~~~~~~~~-~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~---~~~~-~~~~l~~ 75 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACS-PYFKALFSGDF-KESKKSEIYLDDVSPEDFRALLEFLYTGKLD---LPEE-NVEELLE 75 (90)
T ss_pred eEEEECCEEEehHHHHHhhcC-HHHHHHHcCCC-ccCCCCEEEecCCCHHHHHHHHHeecCceee---cCHH-HHHHHHH
Confidence 569999999999999998885 45556654321 11134455 4479999999999999999988 6666 6668999
Q ss_pred HHHHHHHh
Q psy13137 141 ELLKKKKK 148 (164)
Q Consensus 141 El~y~~~~ 148 (164)
.++||+-.
T Consensus 76 ~a~~~~~~ 83 (90)
T smart00225 76 LADYLQIP 83 (90)
T ss_pred HHHHHCcH
Confidence 99998753
No 12
>PHA03098 kelch-like protein; Provisional
Probab=93.73 E-value=0.07 Score=48.38 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=59.4
Q ss_pred CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137 58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS 137 (164)
Q Consensus 58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~ 137 (164)
.+-.|.+.|+|+.|...+..|....+ .|..|+... .. .+++-+.=++++|+.||+|+.+|++. +..+- ...
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~-yF~~mf~~~--~~--~~~i~l~~~~~~~~~~l~y~Ytg~~~---i~~~~-~~~ 80 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSE-YFKKMFKNN--FK--ENEINLNIDYDSFNEVIKYIYTGKIN---ITSNN-VKD 80 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhH-HHHHHHhCC--CC--CceEEecCCHHHHHHHHHHhcCCceE---EcHHH-HHH
Confidence 34566777799999999999987643 455666532 12 45565533999999999999999988 55443 556
Q ss_pred HHHHHHHHHHhh
Q psy13137 138 YTSELLKKKKKK 149 (164)
Q Consensus 138 f~eEl~y~~~~~ 149 (164)
++.-+++|+.-.
T Consensus 81 ll~~A~~l~~~~ 92 (534)
T PHA03098 81 ILSIANYLIIDF 92 (534)
T ss_pred HHHHHHHhCcHH
Confidence 777777777543
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=87.86 E-value=0.57 Score=42.69 Aligned_cols=79 Identities=9% Similarity=-0.000 Sum_probs=56.0
Q ss_pred EEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE---ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137 63 VLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF---DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT 139 (164)
Q Consensus 63 ~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI---DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~ 139 (164)
.+-|.|..|...+..|.... ..|..||... +....+++.+ |=|++.++.||+|+.||+|. +..+ .++.++
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S-~YFraMF~~~--~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~---it~~-nV~~ll 97 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLS-PYFRTHLRQK--YTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY---IDSH-NVVNLL 97 (480)
T ss_pred EEEEcCcEEeeehhhhhhcC-HHHHHHhcCC--ccccccceEEEecCcCHHHHHHHHHhheeeeEE---Eecc-cHHHHH
Confidence 35566778888888887764 3556666431 2222333432 78999999999999999998 6554 577888
Q ss_pred HHHHHHHHh
Q psy13137 140 SELLKKKKK 148 (164)
Q Consensus 140 eEl~y~~~~ 148 (164)
+.+.++|.-
T Consensus 98 ~aA~~Lqi~ 106 (480)
T PHA02790 98 RASILTSVE 106 (480)
T ss_pred HHHHHhChH
Confidence 888888864
No 14
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=87.50 E-value=0.32 Score=34.19 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=55.2
Q ss_pred CeEEEEeC-CeEEEeeHHHHhcCCCccccchhhhcCCCCCCCC--eEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137 60 NRVVLNVG-GIRHETYKATLKKIPATRLSRLTEALGNYDPVLN--EYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCM 135 (164)
Q Consensus 60 ~~I~LNVG-G~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~--eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~ 135 (164)
.-+.|.|| |..|.+.+..|...- .+|..++.... ..+.+ ++-+ |=+++.|..|++|+.+|.+. .+..-..
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S-~~F~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~---~~~~~~~ 84 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARS-PYFRNLFEGSK--FKESTVPEISLPDVSPEAFEAFLEYMYTGEIE---INSDENV 84 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHB-HHHHHHHTTTT--STTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---EE-TTTH
T ss_pred CCEEEEECCCEEEeechhhhhccc-hhhhhcccccc--cccccccccccccccccccccccccccCCccc---CCHHHHH
Confidence 45889999 999999999997652 35666665431 11222 3433 36789999999999999987 5523345
Q ss_pred HHHHHHHHHHHHhh
Q psy13137 136 ASYTSELLKKKKKK 149 (164)
Q Consensus 136 ~~f~eEl~y~~~~~ 149 (164)
..+++-+++|+...
T Consensus 85 ~~ll~lA~~~~~~~ 98 (111)
T PF00651_consen 85 EELLELADKLQIPE 98 (111)
T ss_dssp HHHHHHHHHTTBHH
T ss_pred HHHHHHHHHhCcHH
Confidence 56777777766543
No 15
>PHA02713 hypothetical protein; Provisional
Probab=85.02 E-value=1.1 Score=41.75 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=58.7
Q ss_pred eEEEEeC-CeEEEeeHHHHhcCCCccccchhhhcCCCC--CCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHH
Q psy13137 61 RVVLNVG-GIRHETYKATLKKIPATRLSRLTEALGNYD--PVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMA 136 (164)
Q Consensus 61 ~I~LNVG-G~~F~T~~sTL~r~P~S~L~~l~~~~~~~~--~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~ 136 (164)
-|+|-|+ |+.|...+..|..... .|..||... +. ...+++-+ +=+++.|+.||+|+.+|.|. ++ ...
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~-YF~amF~~~--~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~----~~--nv~ 97 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSK-YFRTLFTTP--MIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS----SM--NVI 97 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCH-HHHHHhcCC--chhhccCceEEeccCCHHHHHHHHHHhcCCCCC----HH--HHH
Confidence 4778898 8999999999986643 456666431 12 12456655 58999999999999999855 33 466
Q ss_pred HHHHHHHHHHHhhH
Q psy13137 137 SYTSELLKKKKKKK 150 (164)
Q Consensus 137 ~f~eEl~y~~~~~~ 150 (164)
.++.-++++|...=
T Consensus 98 ~ll~aA~~lqi~~l 111 (557)
T PHA02713 98 DVLKCADYLLIDDL 111 (557)
T ss_pred HHHHHHHHHCHHHH
Confidence 78888888887543
No 16
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=77.03 E-value=0.77 Score=36.90 Aligned_cols=11 Identities=100% Similarity=1.066 Sum_probs=0.0
Q ss_pred HHHhhHHHHHh
Q psy13137 145 KKKKKKKKKKK 155 (164)
Q Consensus 145 ~~~~~~~~~~~ 155 (164)
|+.+||+||+|
T Consensus 82 ~k~kKK~KKkk 92 (154)
T PF06375_consen 82 KKKKKKKKKKK 92 (154)
T ss_dssp -----------
T ss_pred hhhhhhccchh
Confidence 44444433333
No 17
>PF15002 ERK-JNK_inhib: ERK and JNK pathways, inhibitor
Probab=69.80 E-value=4 Score=34.23 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhcc
Q psy13137 135 MASYTSELLKKKKKKKKKKKKKKKKK 160 (164)
Q Consensus 135 ~~~f~eEl~y~~~~~~~~~~~~~~~~ 160 (164)
...+.+++.+-..+++|||++|+.+|
T Consensus 173 ~~~~~~~~~~~e~~~~kKk~kkk~kK 198 (207)
T PF15002_consen 173 KEREKEEQRYEEERRKKKKKKKKIKK 198 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888888877666666665444
No 18
>KOG4441|consensus
Probab=69.49 E-value=5.2 Score=37.73 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=61.2
Q ss_pred CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeE-EEecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137 60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEY-FFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY 138 (164)
Q Consensus 60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~ey-FIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f 138 (164)
--|.|-||+..|...+-.|..+. .+|..||... .-.....++ +.+-||..++.+++|..+|.+. ..+-.++.+
T Consensus 37 cDv~L~v~~~~~~aHR~VLAa~S-~YFraMFt~~-l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~----i~~~nVq~l 110 (571)
T KOG4441|consen 37 CDVTLLVGDREFPAHRVVLAACS-PYFRAMFTSG-LKESKQKEINLEGVDPETLELLLDYAYTGKLE----ISEDNVQEL 110 (571)
T ss_pred ceEEEEECCeeechHHHHHHhcc-HHHHHHhcCC-cccccceEEEEecCCHHHHHHHHHHhhcceEE----echHhHHHH
Confidence 45889999999998888887663 2455566431 112344555 4468999999999999999988 345567788
Q ss_pred HHHHHHHHHhh
Q psy13137 139 TSELLKKKKKK 149 (164)
Q Consensus 139 ~eEl~y~~~~~ 149 (164)
++-+.++|..-
T Consensus 111 l~aA~~lQi~~ 121 (571)
T KOG4441|consen 111 LEAASLLQIPE 121 (571)
T ss_pred HHHHHHhhhHH
Confidence 88888888654
No 19
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=50.51 E-value=34 Score=25.33 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCCCeEEEEeCC--eEEEeeHHHHhcCCCccccchhhhc-C--CCCCCCCeEEEecCCCChHHHhccc
Q psy13137 57 DAENRVVLNVGG--IRHETYKATLKKIPATRLSRLTEAL-G--NYDPVLNEYFFDRHPGVFAQVLNYY 119 (164)
Q Consensus 57 ~~~~~I~LNVGG--~~F~T~~sTL~r~P~S~L~~l~~~~-~--~~~~~~~eyFIDRDp~~F~~ILnyL 119 (164)
.+...+.+.||. .+|.++.+.|. +| +|..|+... . .++ ..|.+.|.=|...|++||..+
T Consensus 36 vp~G~~~VyVG~~~~Rfvvp~~~L~-hp--~f~~LL~~aeeEfG~~-~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 36 VPKGHFAVYVGEERRRFVVPVSYLN-HP--LFQELLEQAEEEFGFD-QDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCCeEEEEeCccceEEEechHHcC-ch--hHHHHHHHHhhhcCcC-CCCcEEeeCCHHHHHHHHHHh
Confidence 346788999985 89999987653 44 445554321 1 233 478899999999999999765
No 20
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=50.48 E-value=28 Score=25.66 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=33.5
Q ss_pred cCCCChHHHhccccCCC--------CCCCCCCCCCCHHHHHHHHHHHHHhhHHHHHhh
Q psy13137 107 RHPGVFAQVLNYYRVFR--------LPLGFKPWTVCMASYTSELLKKKKKKKKKKKKK 156 (164)
Q Consensus 107 RDp~~F~~ILnyLRtG~--------L~~~~~P~~v~~~~f~eEl~y~~~~~~~~~~~~ 156 (164)
|||.++..++.|+--.. +. =|..++...|.+||.-=|++...++.|+
T Consensus 41 rNP~i~ekLi~~~~Ide~gTn~p~~i~---dP~~~~~~~y~e~L~k~Qk~~~~k~ek~ 95 (96)
T PF07818_consen 41 RNPSILEKLIEFFGIDEYGTNFPKDIF---DPHGFPEEDYYEELAKAQKEEMEKREKE 95 (96)
T ss_pred CChHHHHHHHHHcCCCcccCCCChhhc---CCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 68888888888876321 22 4666778889999988887776655544
No 21
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.93 E-value=6.2 Score=29.12 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred ecCCCChHHHhccccCCC
Q psy13137 106 DRHPGVFAQVLNYYRVFR 123 (164)
Q Consensus 106 DRDp~~F~~ILnyLRtG~ 123 (164)
.-||++|++||+.|+-+.
T Consensus 40 ~~dp~VFriildLL~~nV 57 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRLNV 57 (88)
T ss_pred CcChHHHHHHHHHHHcCC
Confidence 349999999999999865
No 22
>KOG0783|consensus
Probab=43.74 E-value=15 Score=37.31 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=47.3
Q ss_pred cCCCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhc-------C----CCCCCCCeEEEe-cCCCChHHHhccccC
Q psy13137 54 NMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL-------G----NYDPVLNEYFFD-RHPGVFAQVLNYYRV 121 (164)
Q Consensus 54 ~~~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~-------~----~~~~~~~eyFID-RDp~~F~~ILnyLRt 121 (164)
+.+++-.-|+|-|||..|...+=.|+... ++|-.|+-.. + +.+.....+|+| -.|.+|.++|+|+.+
T Consensus 553 ~~~ds~hDVtf~vg~~~F~aHKfIl~~rs-~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 553 NYKDSFHDVTFYVGTSMFHAHKFILCARS-SFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYT 631 (1267)
T ss_pred ccccccceEEEEecCeecccceEEEEecc-HHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhc
Confidence 44556677999999999988765554432 3455544210 1 112344456665 789999999999999
Q ss_pred CCCC
Q psy13137 122 FRLP 125 (164)
Q Consensus 122 G~L~ 125 (164)
..+.
T Consensus 632 dt~~ 635 (1267)
T KOG0783|consen 632 DTLL 635 (1267)
T ss_pred cccc
Confidence 8766
No 23
>PLN03220 uncharacterized protein; Provisional
Probab=38.36 E-value=96 Score=23.58 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=35.1
Q ss_pred CCCeEEEEeCC------eEEEeeHHHHhcCCCccccchhhhc---CCCCCCCCeEEEecCCCChHHHh
Q psy13137 58 AENRVVLNVGG------IRHETYKATLKKIPATRLSRLTEAL---GNYDPVLNEYFFDRHPGVFAQVL 116 (164)
Q Consensus 58 ~~~~I~LNVGG------~~F~T~~sTL~r~P~S~L~~l~~~~---~~~~~~~~eyFIDRDp~~F~~IL 116 (164)
+...+.+-||. ++|.+..+-| .+| .|..|++.. -.++...|.+=|==|.+.|..||
T Consensus 36 PkGh~aVyVGe~~~~e~kRFVVPv~yL-~hP--~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll 100 (105)
T PLN03220 36 PKGHVAVYVGEQIEMEKKRFVVPISFL-NHP--SFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLI 100 (105)
T ss_pred CCCeEEEEECCCCCccceEEEEEHHHc-CCh--HHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHH
Confidence 44677778985 7999998754 455 344444321 12343357777777777777766
No 24
>PLN03219 uncharacterized protein; Provisional
Probab=34.74 E-value=1.1e+02 Score=23.35 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCeEEEEeCC----eEEEeeHHHHhcCCCccccchhhhc---CCCCCCCCeEEEecCCCChHHHhcc
Q psy13137 58 AENRVVLNVGG----IRHETYKATLKKIPATRLSRLTEAL---GNYDPVLNEYFFDRHPGVFAQVLNY 118 (164)
Q Consensus 58 ~~~~I~LNVGG----~~F~T~~sTL~r~P~S~L~~l~~~~---~~~~~~~~eyFIDRDp~~F~~ILny 118 (164)
+...+.+.||. ++|.+..+-| .+| .|..|++.. -.++...|.+=|-=|...|..||..
T Consensus 40 pkGh~aVYVG~~~E~kRFvVPi~yL-~hP--~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 40 PKGHVAVYVGEQMEKKRFVVPISYL-NHP--LFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCeEEEEECCCCCceEEEEEHHHc-CCh--HHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 45777888984 8999998755 445 344444321 1234345778888888888888865
No 25
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=32.92 E-value=25 Score=29.84 Aligned_cols=7 Identities=57% Similarity=0.710 Sum_probs=3.5
Q ss_pred HHHhhHH
Q psy13137 145 KKKKKKK 151 (164)
Q Consensus 145 ~~~~~~~ 151 (164)
|++||||
T Consensus 58 fkkrkrK 64 (217)
T PF15333_consen 58 FKKRKRK 64 (217)
T ss_pred HHHHHHH
Confidence 5555443
No 26
>KOG2422|consensus
Probab=31.24 E-value=15 Score=35.60 Aligned_cols=15 Identities=73% Similarity=0.837 Sum_probs=7.5
Q ss_pred HHhhHHHHHhhhhcc
Q psy13137 146 KKKKKKKKKKKKKKK 160 (164)
Q Consensus 146 ~~~~~~~~~~~~~~~ 160 (164)
++||||||||||-++
T Consensus 91 k~KKK~krkkKk~~~ 105 (665)
T KOG2422|consen 91 KKKKKKKRKKKKSTA 105 (665)
T ss_pred ccchhhhhccccccC
Confidence 445555555555443
No 27
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=26.05 E-value=58 Score=23.01 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=13.9
Q ss_pred CCeEEEEeCCeEEEee
Q psy13137 59 ENRVVLNVGGIRHETY 74 (164)
Q Consensus 59 ~~~I~LNVGG~~F~T~ 74 (164)
+.++.|||||-.|.+-
T Consensus 36 ~~~~vFnI~GN~yRlI 51 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLI 51 (76)
T ss_pred CCEEEEEcCCCcEEEE
Confidence 6899999999888774
No 28
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=25.59 E-value=39 Score=28.54 Aligned_cols=14 Identities=50% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHhhHHHH
Q psy13137 140 SELLKKKKKKKKKK 153 (164)
Q Consensus 140 eEl~y~~~~~~~~~ 153 (164)
+||+||.+|=++||
T Consensus 191 kEL~FY~kk~~~kK 204 (205)
T PTZ00148 191 KELEFYLKKLEKKK 204 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 59999999877655
No 29
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.57 E-value=66 Score=24.13 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCCCeEEEEeCCeEEEeeH
Q psy13137 57 DAENRVVLNVGGIRHETYK 75 (164)
Q Consensus 57 ~~~~~I~LNVGG~~F~T~~ 75 (164)
-.+.++.|||||-.|++-.
T Consensus 52 ~~Dnr~Vfdi~GN~yRLIv 70 (98)
T COG4680 52 YLDNRVVFDIGGNKYRLIV 70 (98)
T ss_pred eccceEEEEcCCCEEEEEE
Confidence 3679999999998887643
No 30
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=23.71 E-value=26 Score=31.36 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHH
Q psy13137 137 SYTSELL 143 (164)
Q Consensus 137 ~f~eEl~ 143 (164)
.+.+|+.
T Consensus 431 ~i~~el~ 437 (455)
T PF05833_consen 431 EIREELE 437 (455)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4666664
No 31
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=22.17 E-value=63 Score=24.23 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q psy13137 9 KNGTRNLWRKTLARVQYTVK 28 (164)
Q Consensus 9 ~~~~~~l~~~~~~~~s~~~~ 28 (164)
-+|+..+|+..+.|+-..|+
T Consensus 50 v~Gf~~~Wqavl~rf~~~~~ 69 (98)
T TIGR03130 50 VDGFGAVWQAVIERFFARYP 69 (98)
T ss_pred ccCcHHHHHHHHHHHHhhCC
Confidence 48999999999999999883
Done!