RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13137
(164 letters)
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 109 bits (275), Expect = 6e-32
Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 3/87 (3%)
Query: 56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
MDAENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ+
Sbjct: 1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
+NYYR +L P VC + EL
Sbjct: 61 INYYRSGKLHY---PTDVCGPLFEEEL 84
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 106 bits (267), Expect = 2e-30
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
+ +VLNV G R +T++ TL++ P T L + ++ EYFFDR P VF VL
Sbjct: 32 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVL 90
Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
N+YR +L P C+++Y EL
Sbjct: 91 NFYRTGKLHY---PRYECISAYDDEL 113
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 104 bits (260), Expect = 1e-29
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
+ +VLNV G R +T++ TL++ P T L + ++ EYFFDR P VF VL
Sbjct: 10 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVL 68
Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
N+YR +L P C+++Y EL
Sbjct: 69 NFYRTGKLHY---PRYECISAYDDEL 91
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 101 bits (253), Expect = 9e-29
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L Y P +YFFDR P +F +LN+YR
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 61 GKLHY---PRHECISAYDEEL 78
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 108 bits (272), Expect = 1e-28
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
++ RVV+N+ G+R ET TL + P T L + + +DP+ NEYFFDR+ F +L
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 117 NYYRV-FRLPLGFKPWTVCMASYTSEL 142
YY+ RL +P V + ++ E+
Sbjct: 109 YYYQSGGRL---RRPVNVPLDIFSEEI 132
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton transport,
membrane protein; 1.51A {Aplysia californica} SCOP:
d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E*
1qdw_A 1dsx_A
Length = 100
Score = 95.2 bits (237), Expect = 2e-26
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
Query: 121 VFRLPLGFKPWTVCMASYTSEL 142
+P V + ++ E+
Sbjct: 62 SGGRLR--RPVNVPLDVFSEEI 81
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 90.8 bits (226), Expect = 1e-24
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVL---NEYFFDRHPGVFA 113
V LNVGG T + TL + P + L RL +A + D Y DR P F
Sbjct: 3 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 62
Query: 114 QVLNYYRVFRLPL 126
VLNY R +L +
Sbjct: 63 PVLNYLRHGKLVI 75
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 88.9 bits (220), Expect = 9e-23
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFA 113
V LNVGG T + TL + P + L RL +A + D +E Y DR P F
Sbjct: 9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 68
Query: 114 QVLNYYRVFRLPLGFKPWTVCMASYTSEL-------LKK--KKKKKKKKKKKKKKKDCHV 164
VLNY R +L + + E L K K K +++ K + HV
Sbjct: 69 PVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHV 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.009
Identities = 36/164 (21%), Positives = 53/164 (32%), Gaps = 56/164 (34%)
Query: 9 KNGTRNLWRKTLARVQYTVKAI------------LTKAVLAVGDAGV----GGAGGKMNL 52
+N T + K L + T + + L +AV G+A + GG G N
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQG---NT 166
Query: 53 LNMMDAENRVVLNVGGIRHETYK---ATLKKIPATRLSRLTEA----------------- 92
+ + E R ++TY L K A LS L
Sbjct: 167 DDYFE-ELR-------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 93 LGNYDPVLNEYFFDRHP------GVFAQVLNYYRVFRLPLGFKP 130
L N ++ + P GV Q+ +Y V LGF P
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGV-IQLAHYV-VTAKLLGFTP 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.44
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 17/43 (39%)
Query: 75 KATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP--GVFAQV 115
K LKK L +L Y D P + A +
Sbjct: 19 KQALKK--------LQASLKLYAD-------DSAPALAIKATM 46
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.9 bits (65), Expect = 0.55
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 142 LLKKKKKKKKKKKKKKKKKDC 162
L ++K+ +++K ++ C
Sbjct: 179 LQPPRRKEVPRRRKNHRRSGC 199
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency
decline, ATP-binding, DNA DAMA repair, DNA-binding,
helicase, hydrolase; 1.95A {Escherichia coli} PDB:
2b2n_A* 4dfc_A
Length = 483
Score = 28.9 bits (65), Expect = 0.88
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 12/81 (14%)
Query: 83 ATRLSRLTEALGNYD--PVLNEYFFDRHPGVFAQVLNYYRVFRLPL--GFKPWTVCMASY 138
R L E L P + + GF +A
Sbjct: 392 EGRREALGELLARIKIAPQRIMRLDEASDRGRY-------LMIGAAEHGFVDTVRNLALI 444
Query: 139 T-SELLKKKKKKKKKKKKKKK 158
S+LL ++ ++++ ++
Sbjct: 445 CESDLLGERVARRRQDSRRTI 465
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.7 bits (64), Expect = 0.98
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK+ K
Sbjct: 94 GATGKKKKKKKKKRGPK 110
Score = 28.3 bits (63), Expect = 1.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK+
Sbjct: 91 DGDGATGKKKKKKKKKR 107
Score = 28.3 bits (63), Expect = 1.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK+
Sbjct: 92 GDGATGKKKKKKKKKRG 108
Score = 28.3 bits (63), Expect = 1.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK+
Sbjct: 93 DGATGKKKKKKKKKRGP 109
Score = 28.3 bits (63), Expect = 1.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK+ K
Sbjct: 95 ATGKKKKKKKKKRGPKV 111
Score = 27.6 bits (61), Expect = 2.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KKKKKKKKK
Sbjct: 90 GDGDGATGKKKKKKKKK 106
Score = 27.2 bits (60), Expect = 3.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 144 KKKKKKKKKKKKKKKKKD 161
KKKKKKKKK+ K + D
Sbjct: 97 GKKKKKKKKKRGPKVQTD 114
Score = 26.8 bits (59), Expect = 4.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 141 ELLKKKKKKKKKKKKKKKKK 160
E KKKKKKKK
Sbjct: 86 EDGDGDGDGATGKKKKKKKK 105
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 28.2 bits (63), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 28 KAILTKAVLAVGDAGVGGAGGKMNLLNMM 56
K ILTK A+ G GG +LLN+M
Sbjct: 488 KNILTKNYSALTA---GAKGGHFSLLNIM 513
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 26.7 bits (58), Expect = 1.8
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 144 KKKKKKKKKKKKKKKKK 160
K+ ++ K K++K++K
Sbjct: 74 KEIANQRSKSKRQKRRK 90
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Length = 267
Score = 27.6 bits (61), Expect = 1.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 99 VLNEYFFDR-------HPGVFAQVLNYYR 120
VL+EYFF P ++ + ++YR
Sbjct: 217 VLSEYFFSAPELFAPRFPALWQRFCHFYR 245
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 26.5 bits (59), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 146 KKKKKKKKKKKKKKKD 161
++ KK+ +KKKD
Sbjct: 2 VTPREPKKRTTRKKKD 17
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 27.3 bits (61), Expect = 2.5
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 83 ATRLSRLTEALGNYD--PVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT- 139
R L E L P + + + GF +A
Sbjct: 395 EGRREALGELLARIKIAPQRIMRLDEASDRGRYLM-----IGAAEHGFVDTVRNLALICE 449
Query: 140 SELLKKKKKKKKKKKKKKKKKD 161
S+LL ++ ++++ ++ D
Sbjct: 450 SDLLGERVARRRQDSRRTINPD 471
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 26.5 bits (58), Expect = 3.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 84 TRLSRLTEALGNYDPVLNEYFFDRH 108
+ L + A +D L Y FD +
Sbjct: 183 SDLKKFITANNGHDLSLALYVFDEY 207
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 26.6 bits (59), Expect = 3.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 139 TSELLKKKKKKKKKKKKKKKKK 160
S +K +KKKKKK K +
Sbjct: 366 QSSASRKTQKKKKKKASKTAEN 387
Score = 26.6 bits (59), Expect = 4.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 141 ELLKKKKKKKKKKKKKKKKK 160
LL+ +K +KKKKKK
Sbjct: 363 ALLQSSASRKTQKKKKKKAS 382
Score = 25.9 bits (57), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 143 LKKKKKKKKKKKKKKKKKD 161
+K +KKKKKK K ++
Sbjct: 369 ASRKTQKKKKKKASKTAEN 387
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 26.7 bits (59), Expect = 4.1
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 117 NYYRVFRLPLGFKPWTVCMASYTSELLKKKKKKKKKKKK 155
+ R F P GFK YT + K + K
Sbjct: 399 DLLR-FYEPKGFKKVNPSDYDYTKHDEDSSETSKDNEDK 436
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 25.4 bits (56), Expect = 4.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 143 LKKKKKKKKKKKKKKKKKD 161
+ + ++ +K KKD
Sbjct: 1 MAGASDRTGVRRPRKAKKD 19
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 26.3 bits (57), Expect = 5.5
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 144 KKKKKKKKKKKKKKKKKD 161
KK K +K K D
Sbjct: 294 GKKNSKMTAAQKALAKVD 311
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 25.0 bits (55), Expect = 5.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 144 KKKKKKKKKKKKKKKKKDC 162
K K KK+ +++ +K
Sbjct: 4 KNAKPKKEAQRRPSRKAKV 22
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics,
PSI, protein structure initiative; 2.80A
{Chromobacterium violaceum} SCOP: a.204.1.4
Length = 116
Score = 25.4 bits (56), Expect = 5.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 137 SYTSELLKKKKKKKKKK 153
SY + L K + KK
Sbjct: 24 SYVASLFHKGEDAILKK 40
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 25.7 bits (57), Expect = 5.9
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 135 MASYTSELLKKKKKKKKKKKKKKKKK 160
MA ++ ++ + +K +K
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSASARK 26
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 25.9 bits (56), Expect = 6.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 144 KKKKKKKKKKKKKKKKK 160
KK K ++KKKK+ K K
Sbjct: 83 KKPKPQEKKKKQPAKTK 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.3 bits (59), Expect = 6.4
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 134 CMASYTSELLKK--KKKKKKKKKKKKKKK 160
S+T LK ++ + + + + + K
Sbjct: 943 VKESHTGRYLKPILERDRARMQARYEAAK 971
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.0 bits (58), Expect = 7.0
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 134 CMASYTSELLKK--KKKKKKKKKKKKKKK 160
S+T LK ++ + + + + + K
Sbjct: 641 VKESHTGRYLKPILERDRARMQARYEAAK 669
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 25.9 bits (57), Expect = 7.0
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 140 SELLK--KKKKKKKKKKKKKKKK 160
+ LL+ K ++ KK +KK
Sbjct: 441 AALLEKIKAERAASGGKKASRKK 463
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.0 bits (58), Expect = 8.2
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 134 CMASYT----SELLKKKKKKKKKKKKKKKK 159
ASYT +E++ + +++
Sbjct: 961 VPASYTGKFLAEVVGGGASAATSRSNRRRN 990
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases,
HSP70, actin superfamily, anhydro-N-actetylmuramic acid
binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB:
3qbw_A*
Length = 371
Score = 25.6 bits (57), Expect = 8.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 59 ENRVVLNVGGI 69
+R VLN+GG
Sbjct: 156 TSRAVLNIGGF 166
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 25.2 bits (56), Expect = 9.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 141 ELLKKKKKKKKKKKKKKKKKDCH 163
+ +K+ K+ +KK+K K + H
Sbjct: 157 KKFEKELKELQKKQKHKLEHHHH 179
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 24.9 bits (55), Expect = 9.8
Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 11/58 (18%)
Query: 101 NEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY-----TSELLKKKKKKKKKK 153
+ + P +V RLP Y T + K +
Sbjct: 72 GVKYLTQRPKYV------RKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFKFE 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,580,907
Number of extensions: 153062
Number of successful extensions: 2114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1755
Number of HSP's successfully gapped: 195
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)