RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13137
(164 letters)
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 87.3 bits (216), Expect = 1e-23
Identities = 56/68 (82%), Positives = 62/68 (91%)
Query: 59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
ENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ++NY
Sbjct: 1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60
Query: 119 YRVFRLPL 126
YR +L
Sbjct: 61 YRSGKLHY 68
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 85.6 bits (212), Expect = 4e-23
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
RVV+NV G+R ET TL + P T L + YDP+ NEYFFDR+ F +L +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 81.1 bits (200), Expect = 3e-21
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
+VLNV G R +T++ TL++ P T L E Y P +YFFDR P +F +LN+YR
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
+L P C+++Y EL
Sbjct: 61 GKLHY---PRHECISAYDEEL 78
>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 87
Score = 26.3 bits (58), Expect = 0.84
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 137 SYTSELLKKKKKKKKKKKKKKK 158
S T L KK ++
Sbjct: 22 STTVAALDGGVHALGKKLLEEA 43
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 27.2 bits (60), Expect = 0.87
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 32 TKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPA 83
TKA + V G GGAG N + + E + + T L + A
Sbjct: 14 TKAKITV--VGCGGAGN--NTITRLKMEG--IEGAKTVAINTDAQQLIRTKA 59
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 27.2 bits (60), Expect = 0.93
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 34 AVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRL----SRL 89
AV+ V GVGG GG N +N M N V V I T LK I A + +
Sbjct: 2 AVIKV--IGVGGGGG--NAVNHMAKNN--VEGVEFICANTDAQALKNIAARTVLQLGPGV 55
Query: 90 TEALGNY-DPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVC-MASYTSELLKKKK 147
T+ LG +P + ++VL + + G T A +E+ K+
Sbjct: 56 TKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMG 115
Query: 148 K 148
Sbjct: 116 I 116
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.5 bits (58), Expect = 1.8
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 131 WTVCMASYTSELLKKKKKKKKKKKKKKKKK 160
W + T +L +K++ K K+ + +K
Sbjct: 207 WKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 236
>d1yvwa1 a.204.1.4 (A:4-95) Phosphoribosyl-ATP pyrophosphatase HisE
{Bacillus cereus [TaxId: 1396]}
Length = 92
Score = 24.3 bits (53), Expect = 3.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 137 SYTSELLKKKKKKKKKKKKKK 157
SYT+ L K + K KK ++
Sbjct: 20 SYTNYLFSKGEDKILKKIGEE 40
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 24.4 bits (53), Expect = 4.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 132 TVCMASYTSELLKKKKKKKKKKKKKKKK 159
T +A ELL+K ++ KK + K
Sbjct: 29 TAHIACRFDELLEKNDRRSGKKLEDHPK 56
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ
{Thermotoga maritima [TaxId: 2336]}
Length = 194
Score = 24.9 bits (54), Expect = 4.2
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 42 GVGGAGGKMNLLNMMDAEN 60
GVGGAG N +N M
Sbjct: 7 GVGGAGN--NAINRMIEIG 23
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 24.9 bits (54), Expect = 4.7
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 42 GVGGAGGKMNLLNMMDAEN 60
G+GG G N +N M +
Sbjct: 8 GIGGGGV--NAVNRMIEQG 24
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 24.2 bits (52), Expect = 5.2
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 26 TVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATR 85
TV ++ +A+ VG GV L + +D RV GG+ A + +
Sbjct: 21 TVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEK 80
Query: 86 LSRLTEAL 93
+R+ +AL
Sbjct: 81 KARVEDAL 88
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 24.6 bits (53), Expect = 5.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 84 TRLSRLTEALGNYDPVLNEYFFDRH 108
+ L + A +D L Y FD +
Sbjct: 171 SDLKKFITANNGHDLSLALYVFDEY 195
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA
synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 221
Score = 24.5 bits (53), Expect = 6.3
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 49 KMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRH 108
+ +++ NR ++V + Y+ K+ +D + DRH
Sbjct: 161 QAAHKALLN--NRTEVSV-----DAYETFFKRFDDV----------EFDEEQDAVHEDRH 203
Query: 109 PGVFAQVLNYYRVFR 123
+ + N R +
Sbjct: 204 IFYLSNIENNVREYH 218
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.6 bits (51), Expect = 6.8
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 145 KKKKKKKKKKKKKKKKD 161
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTG 18
Score = 23.6 bits (51), Expect = 7.5
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 144 KKKKKKKKKKKKKKKKK 160
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTG 18
Score = 23.2 bits (50), Expect = 10.0
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 144 KKKKKKKKKKKKKKKKK 160
+K KKK
Sbjct: 3 SGSSGRKPPPKKKMTGT 19
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 23.6 bits (51), Expect = 7.0
Identities = 2/19 (10%), Positives = 8/19 (42%)
Query: 143 LKKKKKKKKKKKKKKKKKD 161
+ + K+ +K++
Sbjct: 83 PEGYEMKRVGDYYVFEKRE 101
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.3 bits (52), Expect = 7.1
Identities = 1/24 (4%), Positives = 10/24 (41%)
Query: 138 YTSELLKKKKKKKKKKKKKKKKKD 161
+ ++ + + + + +K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 23.0 bits (50), Expect = 7.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 139 TSELLKKKKKKKKKKKKKKKKKDCHV 164
S L++K K K K +
Sbjct: 3 MSYLIRKAAGLSKGSATPNKAKVGKL 28
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 24.5 bits (53), Expect = 7.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 141 ELLKKKKKKKKKKKKKKKKK 160
E +K ++ K K+K +K++
Sbjct: 312 ETEEKMRRAKLAKEKAEKER 331
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate
phosphoribosyltransferase, C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 24.6 bits (53), Expect = 7.8
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 11 GTRNLWRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLL 53
GTR R+ + Q + + KAV D G N+L
Sbjct: 29 GTR---RRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNIL 68
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE
{Streptomyces coelicolor [TaxId: 1902]}
Length = 88
Score = 23.5 bits (51), Expect = 8.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 137 SYTSELLKKKKKKKKKKKKKK 157
S T+EL+ K KK ++
Sbjct: 22 SRTAELVDKGVHAIGKKVVEE 42
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 24.0 bits (52), Expect = 8.4
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTS 140
G+ +L +PL K M + T
Sbjct: 67 GIRDVLLEDVAQRNIPLSHKKLRRAMKAITR 97
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 23.7 bits (51), Expect = 8.4
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 126 LGFKPWTVCMASYTSELLK--KKKKKKKKKKKKKKKKD 161
L + + S + +K K KK K + ++
Sbjct: 59 LKERNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETAL 96
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.1 bits (52), Expect = 8.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 146 KKKKKKKKKKKKKKKDCH 163
K K K K +++ K +
Sbjct: 2 KNKGKGGKNRRRGKNENE 19
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.9 bits (52), Expect = 9.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 143 LKKKKKKKKKKKKKKKK 159
LK+ +K+K+++ KKK
Sbjct: 145 LKQYLSEKRKEQEAKKK 161
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE
{Chromobacterium violaceum [TaxId: 536]}
Length = 91
Score = 23.2 bits (50), Expect = 9.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 137 SYTSELLKKKKKKKKKK 153
SY + L K + KK
Sbjct: 21 SYVASLFHKGEDAILKK 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,662
Number of extensions: 29156
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 85
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)