Query psy13138
Match_columns 362
No_of_seqs 279 out of 1621
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:32:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4195|consensus 100.0 2.3E-97 5E-102 672.7 21.7 268 34-313 5-275 (275)
2 cd03670 ADPRase_NUDT9 ADP-ribo 100.0 2.2E-48 4.8E-53 353.3 19.5 183 125-308 1-185 (186)
3 COG1051 ADP-ribose pyrophospha 99.6 5E-15 1.1E-19 129.9 13.2 110 174-309 22-141 (145)
4 PRK05379 bifunctional nicotina 99.6 2.5E-14 5.4E-19 141.7 12.6 116 174-307 215-339 (340)
5 cd03674 Nudix_Hydrolase_1 Memb 99.5 4.4E-14 9.6E-19 121.8 11.7 118 174-306 16-137 (138)
6 cd04679 Nudix_Hydrolase_20 Mem 99.5 1.6E-13 3.5E-18 115.6 11.3 101 174-300 15-122 (125)
7 cd04696 Nudix_Hydrolase_37 Mem 99.5 4.5E-13 9.8E-18 113.0 11.9 93 174-290 15-110 (125)
8 cd03673 Ap6A_hydrolase Diadeno 99.5 3.2E-13 6.9E-18 113.6 10.5 110 173-306 16-130 (131)
9 cd03427 MTH1 MutT homolog-1 (M 99.5 3.1E-13 6.8E-18 115.3 9.7 108 174-308 13-127 (137)
10 PRK15434 GDP-mannose mannosyl 99.4 6.2E-13 1.3E-17 118.5 11.4 97 174-290 30-133 (159)
11 cd03430 GDPMH GDP-mannose glyc 99.4 1.1E-12 2.4E-17 114.4 11.7 101 174-293 25-130 (144)
12 PLN02325 nudix hydrolase 99.4 1.2E-12 2.6E-17 114.4 11.7 109 174-304 21-136 (144)
13 cd04695 Nudix_Hydrolase_36 Mem 99.4 1.2E-12 2.6E-17 111.7 11.5 109 174-307 15-129 (131)
14 cd04677 Nudix_Hydrolase_18 Mem 99.4 8.9E-13 1.9E-17 111.5 8.6 106 174-302 20-131 (132)
15 cd04684 Nudix_Hydrolase_25 Con 99.4 3.2E-12 6.9E-17 107.0 11.2 97 174-290 12-113 (128)
16 cd03428 Ap4A_hydrolase_human_l 99.4 2.2E-12 4.7E-17 109.0 9.1 110 173-306 17-129 (130)
17 cd04672 Nudix_Hydrolase_14 Mem 99.4 8.7E-12 1.9E-16 105.0 12.3 95 174-293 14-110 (123)
18 PRK15472 nucleoside triphospha 99.4 2.6E-12 5.6E-17 110.8 8.8 41 174-214 16-63 (141)
19 cd04688 Nudix_Hydrolase_29 Mem 99.3 1.3E-11 2.8E-16 104.1 12.4 41 174-214 13-55 (126)
20 cd04681 Nudix_Hydrolase_22 Mem 99.3 6.1E-12 1.3E-16 106.4 10.1 41 174-214 14-59 (130)
21 cd04678 Nudix_Hydrolase_19 Mem 99.3 1.5E-11 3.2E-16 104.1 12.3 96 174-293 15-115 (129)
22 cd04689 Nudix_Hydrolase_30 Mem 99.3 1.2E-11 2.5E-16 104.2 11.6 41 174-214 13-55 (125)
23 cd04680 Nudix_Hydrolase_21 Mem 99.3 1E-11 2.2E-16 103.2 10.3 101 174-303 13-118 (120)
24 cd04687 Nudix_Hydrolase_28 Mem 99.3 2.3E-11 4.9E-16 103.0 12.2 42 174-215 13-58 (128)
25 PRK09438 nudB dihydroneopterin 99.3 1.7E-11 3.6E-16 106.6 11.5 117 174-309 20-146 (148)
26 cd04691 Nudix_Hydrolase_32 Mem 99.3 2.1E-11 4.6E-16 102.2 11.3 40 174-213 12-58 (117)
27 cd04666 Nudix_Hydrolase_9 Memb 99.3 2.6E-11 5.7E-16 103.0 11.9 42 173-214 15-58 (122)
28 cd04683 Nudix_Hydrolase_24 Mem 99.3 2.6E-11 5.7E-16 101.1 11.5 41 174-214 12-58 (120)
29 cd03672 Dcp2p mRNA decapping e 99.3 3.8E-12 8.1E-17 111.5 6.5 41 174-214 15-57 (145)
30 cd04673 Nudix_Hydrolase_15 Mem 99.3 3.5E-11 7.6E-16 100.0 12.0 41 174-214 12-57 (122)
31 cd04661 MRP_L46 Mitochondrial 99.3 1E-11 2.2E-16 106.7 8.7 98 174-293 14-118 (132)
32 cd04690 Nudix_Hydrolase_31 Mem 99.3 1.4E-11 3.1E-16 102.2 9.3 92 174-290 13-106 (118)
33 cd04511 Nudix_Hydrolase_4 Memb 99.3 2.6E-11 5.7E-16 103.3 11.0 88 174-293 25-117 (130)
34 cd04667 Nudix_Hydrolase_10 Mem 99.3 1.5E-11 3.2E-16 102.0 9.0 41 174-214 12-53 (112)
35 cd04700 DR1025_like DR1025 fro 99.3 4.6E-11 1E-15 103.8 11.4 91 174-290 26-121 (142)
36 cd04676 Nudix_Hydrolase_17 Mem 99.3 4.8E-11 1E-15 99.5 10.9 41 174-214 15-57 (129)
37 cd03675 Nudix_Hydrolase_2 Cont 99.3 4.9E-11 1.1E-15 101.5 11.1 94 174-293 12-109 (134)
38 PRK10546 pyrimidine (deoxy)nuc 99.3 3.8E-11 8.3E-16 102.1 10.3 109 174-312 16-132 (135)
39 cd04671 Nudix_Hydrolase_13 Mem 99.2 2.8E-11 6.1E-16 102.8 9.1 99 174-301 13-116 (123)
40 PF00293 NUDIX: NUDIX domain; 99.2 2.5E-11 5.3E-16 101.7 8.7 41 174-214 15-62 (134)
41 cd04686 Nudix_Hydrolase_27 Mem 99.2 1.1E-10 2.4E-15 99.8 11.2 40 174-213 12-53 (131)
42 cd04669 Nudix_Hydrolase_11 Mem 99.2 1E-10 2.2E-15 98.6 10.3 42 174-215 13-58 (121)
43 cd03671 Ap4A_hydrolase_plant_l 99.2 2.5E-10 5.4E-15 99.4 12.4 41 174-214 16-59 (147)
44 cd04662 Nudix_Hydrolase_5 Memb 99.2 2.7E-10 5.8E-15 97.9 12.0 43 172-214 14-65 (126)
45 cd03426 CoAse Coenzyme A pyrop 99.2 1.4E-10 3.1E-15 102.4 9.9 42 173-214 16-65 (157)
46 PRK00714 RNA pyrophosphohydrol 99.2 1.7E-10 3.6E-15 102.1 10.1 118 174-309 21-151 (156)
47 cd03429 NADH_pyrophosphatase N 99.2 1.9E-10 4E-15 98.6 9.5 41 174-214 13-57 (131)
48 PRK00241 nudC NADH pyrophospha 99.1 4E-10 8.7E-15 107.8 12.3 102 174-306 144-249 (256)
49 PRK10776 nucleoside triphospha 99.1 4.4E-10 9.6E-15 94.0 10.2 103 174-306 17-127 (129)
50 cd04670 Nudix_Hydrolase_12 Mem 99.1 5.9E-10 1.3E-14 94.1 10.1 41 174-214 15-59 (127)
51 cd04682 Nudix_Hydrolase_23 Mem 99.1 3.5E-10 7.5E-15 95.1 8.5 41 174-214 13-61 (122)
52 cd04664 Nudix_Hydrolase_7 Memb 99.1 4.2E-10 9.2E-15 95.2 8.9 40 174-213 16-59 (129)
53 cd04692 Nudix_Hydrolase_33 Mem 99.0 1.5E-09 3.2E-14 94.2 10.5 41 174-214 18-66 (144)
54 cd02885 IPP_Isomerase Isopente 99.0 1.8E-09 3.8E-14 96.1 10.5 41 174-214 43-91 (165)
55 cd03425 MutT_pyrophosphohydrol 99.0 1.6E-09 3.5E-14 89.3 9.4 101 174-304 14-122 (124)
56 cd02883 Nudix_Hydrolase Nudix 99.0 2.5E-09 5.5E-14 87.1 9.8 92 174-290 13-108 (123)
57 cd04699 Nudix_Hydrolase_39 Mem 99.0 9.5E-10 2.1E-14 92.1 7.4 41 174-214 14-61 (129)
58 TIGR00586 mutt mutator mutT pr 99.0 2.6E-09 5.7E-14 89.6 10.0 102 174-305 17-126 (128)
59 cd03424 ADPRase_NUDT5 ADP-ribo 99.0 2.7E-09 5.9E-14 91.1 9.2 41 174-214 15-61 (137)
60 PRK10707 putative NUDIX hydrol 98.9 4.8E-10 1E-14 102.7 3.9 41 174-214 45-93 (190)
61 cd04697 Nudix_Hydrolase_38 Mem 98.9 7.3E-09 1.6E-13 87.8 9.8 41 174-214 13-61 (126)
62 cd04665 Nudix_Hydrolase_8 Memb 98.9 1.1E-08 2.4E-13 86.9 10.4 88 174-289 12-100 (118)
63 cd04674 Nudix_Hydrolase_16 Mem 98.9 1.6E-08 3.5E-13 85.9 11.0 40 175-214 17-61 (118)
64 cd04693 Nudix_Hydrolase_34 Mem 98.9 4.9E-09 1.1E-13 88.6 7.5 40 174-214 13-60 (127)
65 PRK15393 NUDIX hydrolase YfcD; 98.9 1.5E-08 3.2E-13 91.9 10.9 41 174-214 50-98 (180)
66 cd04663 Nudix_Hydrolase_6 Memb 98.9 3.2E-08 6.9E-13 85.2 11.5 42 172-213 13-55 (126)
67 cd04694 Nudix_Hydrolase_35 Mem 98.8 2E-08 4.3E-13 87.9 9.6 41 174-214 14-61 (143)
68 TIGR02150 IPP_isom_1 isopenten 98.8 2.4E-08 5.2E-13 88.4 9.0 39 174-214 40-86 (158)
69 PRK03759 isopentenyl-diphospha 98.8 3.7E-08 7.9E-13 89.4 10.0 41 174-214 47-95 (184)
70 cd04685 Nudix_Hydrolase_26 Mem 98.8 3.4E-08 7.4E-13 85.3 8.9 40 174-213 13-59 (133)
71 PLN02709 nudix hydrolase 98.7 1.1E-07 2.4E-12 89.2 11.4 63 142-214 30-100 (222)
72 PRK11762 nudE adenosine nucleo 98.7 9.7E-08 2.1E-12 86.7 10.8 41 174-214 60-106 (185)
73 KOG2839|consensus 98.7 1.9E-08 4.1E-13 87.5 5.3 57 145-215 10-69 (145)
74 PRK08999 hypothetical protein; 98.6 1.6E-07 3.5E-12 91.4 10.0 102 174-305 18-127 (312)
75 cd03676 Nudix_hydrolase_3 Memb 98.6 3.9E-07 8.4E-12 82.1 11.0 71 131-214 18-97 (180)
76 COG0494 MutT NTP pyrophosphohy 98.6 5.5E-07 1.2E-11 74.5 10.8 42 173-214 24-69 (161)
77 COG4119 Predicted NTP pyrophos 98.5 5.4E-07 1.2E-11 77.0 7.8 146 143-317 2-159 (161)
78 TIGR00052 nudix-type nucleosid 98.5 9E-07 1.9E-11 80.8 9.7 33 182-214 77-109 (185)
79 PRK10729 nudF ADP-ribose pyrop 98.4 2.2E-06 4.9E-11 79.3 11.2 32 183-214 83-114 (202)
80 TIGR02705 nudix_YtkD nucleosid 98.4 3.6E-07 7.9E-12 81.4 5.4 41 174-214 36-77 (156)
81 KOG0648|consensus 98.4 5E-07 1.1E-11 87.4 5.3 144 174-342 128-280 (295)
82 COG2816 NPY1 NTP pyrophosphohy 98.1 1.3E-06 2.9E-11 84.0 3.2 40 175-214 157-200 (279)
83 KOG3084|consensus 98.1 3.9E-06 8.4E-11 81.6 4.9 34 181-214 212-245 (345)
84 KOG3069|consensus 98.0 3.8E-05 8.3E-10 72.0 9.7 43 171-213 56-106 (246)
85 PLN02791 Nudix hydrolase homol 98.0 2.6E-05 5.7E-10 84.7 9.6 41 174-214 46-94 (770)
86 PLN02552 isopentenyl-diphospha 98.0 3.5E-05 7.6E-10 73.5 9.4 41 174-214 69-134 (247)
87 PRK15009 GDP-mannose pyrophosp 98.0 8.7E-05 1.9E-09 68.2 11.6 30 184-214 81-110 (191)
88 KOG3041|consensus 97.8 0.00033 7.3E-09 64.2 11.8 42 173-214 88-135 (225)
89 PLN03143 nudix hydrolase; Prov 97.7 7E-05 1.5E-09 73.1 7.1 40 174-213 144-190 (291)
90 cd03431 DNA_Glycosylase_C DNA 97.3 0.0011 2.3E-08 54.3 8.1 37 174-210 15-57 (118)
91 PF14815 NUDIX_4: NUDIX domain 94.2 0.1 2.2E-06 43.1 5.4 97 174-303 10-114 (114)
92 PLN02839 nudix hydrolase 93.4 0.23 4.9E-06 50.2 7.0 33 181-213 233-266 (372)
93 COG1443 Idi Isopentenyldiphosp 92.1 0.24 5.2E-06 45.0 4.7 26 189-214 69-94 (185)
94 PF13869 NUDIX_2: Nucleotide h 91.5 0.38 8.2E-06 44.3 5.5 41 172-212 57-98 (188)
95 PF14443 DBC1: DBC1 87.3 1.8 3.9E-05 37.4 6.0 44 171-214 6-59 (126)
96 KOG1689|consensus 84.9 1.7 3.7E-05 39.4 5.0 41 173-213 84-125 (221)
97 KOG2937|consensus 82.2 0.39 8.3E-06 47.6 -0.3 41 174-214 96-138 (348)
98 COG4112 Predicted phosphoester 71.3 21 0.00045 32.4 7.5 39 174-212 73-128 (203)
99 COG4111 Uncharacterized conser 59.4 7.2 0.00016 37.7 2.5 33 293-328 216-248 (322)
100 KOG4548|consensus 50.5 22 0.00049 34.2 4.2 38 175-212 141-183 (263)
101 PF03487 IL13: Interleukin-13; 33.3 38 0.00083 23.5 2.1 24 187-210 14-37 (43)
102 KOG4313|consensus 27.7 84 0.0018 30.5 4.1 49 163-213 140-196 (306)
103 PRK10880 adenine DNA glycosyla 25.5 2.8E+02 0.006 28.1 7.6 22 283-304 320-343 (350)
No 1
>KOG4195|consensus
Probab=100.00 E-value=2.3e-97 Score=672.73 Aligned_cols=268 Identities=41% Similarity=0.762 Sum_probs=256.4
Q ss_pred ccccCcCCCCCCCCCeeEeeCCCCccccceecCCCcCCCcccCCCCCCCCCCCCCCC-cccCccccccCCccceeeeece
Q psy13138 34 YMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENV-NKYVNKFNELDGYIDRRRCCNV 112 (362)
Q Consensus 34 ~~~~~~r~~~Yp~s~~~R~~Vp~~~v~~W~~~~~~Y~P~~yt~~~~~~~~waD~~~~-~~~~~~~N~~Dg~v~R~S~~~g 112 (362)
+-|++||++.||||+|.||+||++|| +|+++|++|+||+||||.++++-||||++. ++|.|+||++||+|+|+|| +|
T Consensus 5 ~~h~~~r~~~Yp~s~V~R~~VpnekV-~W~~e~~~Y~Pp~yTa~~v~~a~wadp~i~e~~f~pq~N~~DG~vnR~Sf-~g 82 (275)
T KOG4195|consen 5 SYHVNARHLLYPGSPVTRFPVPNEKV-PWSTEFLDYDPPAYTAPRVDAAVWADPDILEPTFTPQWNVVDGLVNRRSF-HG 82 (275)
T ss_pred chhhhcccccCCCCcceeccCCcccc-ccccccccCCCcccccccccccccCCCCCCccccCccccccccceeceec-cc
Confidence 46789999999999999999999999 999999999999999999999779999998 7899999999999999999 99
Q ss_pred eeEeeCCCCCCCCCCCCcccccccccCccCCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe--CCeeeCceee
Q psy13138 113 KYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NGEWGIPGGF 190 (362)
Q Consensus 113 ~y~vd~~~G~P~NP~GRTGl~GRG~L~rwGPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR--~g~WaLPGG~ 190 (362)
.|.| ++|+||||+||||++|||+|||||||||||||||||+||++|++|++ ++|++|||++||| +|+|||||||
T Consensus 83 ~Y~v--q~g~PlNPiGRTGL~GRG~LgrwGPNHaadPiVtRwkrd~~gai~~~--sgk~ile~vavkr~d~~~WAiPGGm 158 (275)
T KOG4195|consen 83 PYTV--QNGLPLNPIGRTGLRGRGSLGRWGPNHAADPIVTRWKRDEDGAICRK--SGKKILEFVAVKRPDNGEWAIPGGM 158 (275)
T ss_pred ceee--ccCCcCCCcccccccccccccccCCccccCcceeeeeecCCCCeeec--ccceeeEEEEEecCCCCcccCCCCc
Confidence 9999 89999999999999999999999999999999999999999999996 8999999999999 9999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEecCCCccc
Q psy13138 191 IEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFM 270 (362)
Q Consensus 191 Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~~~g~~~~ 270 (362)
||+||.++++|+|||.||+..++..+.+ +++.++|++.|.++|+||||||||||||||||+|++||++.|+.++
T Consensus 159 vdpGE~vs~tLkRef~eEa~ns~~k~~e------~~l~~~~~~~g~evYkGYvDDpRNTDNaWmET~avn~hde~g~~~~ 232 (275)
T KOG4195|consen 159 VDPGEKVSATLKREFGEEAMNSLQKSNE------EMLHKLLSQCGMEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNNMD 232 (275)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhCCeEEeeeecCCCCcccccceeEEEEeeeccccchhc
Confidence 9999999999999999999998765421 3567777777999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccceEEEecCCCCCCCcCHHHHHHHHHHHhcCcc
Q psy13138 271 ALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313 (362)
Q Consensus 271 ~~~l~a~dda~~v~W~~vd~~lpL~asH~~iL~~a~~~~~a~~ 313 (362)
++.|++|||+.+++|++|++.++|||+|++||+++++.++|||
T Consensus 233 nl~L~AgDda~~vrW~dVn~~l~LyAshs~fi~lvae~r~aHw 275 (275)
T KOG4195|consen 233 NLNLEAGDDAKKVRWVDVNSNLPLYASHSQFIQLVAEKRGAHW 275 (275)
T ss_pred cccccccCcccceeEEEecCCccchhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999997
No 2
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=100.00 E-value=2.2e-48 Score=353.32 Aligned_cols=183 Identities=46% Similarity=0.853 Sum_probs=154.2
Q ss_pred CCCCCcccccccccCccCCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe--CCeeeCceeecCCCCCHHHHHH
Q psy13138 125 NPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NGEWGIPGGFIEGKETYMDRGR 202 (362)
Q Consensus 125 NP~GRTGl~GRG~L~rwGPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR--~g~WaLPGG~Vd~GEsl~~aa~ 202 (362)
||+||||++|||+|+|||||||||||||||+++..|+.++...+++.+|+||+++| .|.|+||||+|++||++.+||+
T Consensus 1 np~grtg~~grg~l~~wg~n~~~~~~vtr~~~~~~~~~~i~~~~~~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~ 80 (186)
T cd03670 1 NPMGRTGLTGRGLLGRWGPNHAADPIVTRWKRDSSGDGSIHPKSGKPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLK 80 (186)
T ss_pred CCCCccccccCccCCCcCCchhcCEEEEEEEEcCCCCEEEEecCCCCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHH
Confidence 99999999999999999999999999999999966654444446778999999999 8999999999999999999999
Q ss_pred HHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEecCCCcccccCCCCCCcccc
Q psy13138 203 KEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAED 282 (362)
Q Consensus 203 REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~ 282 (362)
|||.|||++++.....+..++ ..+.+.+...+..+|.+|++||||||++|++|++|.|++++++.++...++++||+.+
T Consensus 81 Rel~EEt~l~l~~~~~~~~~l-~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~ 159 (186)
T cd03670 81 REFGEEALNSLQKSDEEKEEI-KKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGS 159 (186)
T ss_pred HHHHHHHcccccccchhhhhh-cchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchhe
Confidence 999999987654332333333 2222222212688999999999999999999999999998877666677888999999
Q ss_pred eEEEecCCCCCCCcCHHHHHHHHHHH
Q psy13138 283 VKWLIVHSDMTFNPTHKTFMKVVTDI 308 (362)
Q Consensus 283 v~W~~vd~~lpL~asH~~iL~~a~~~ 308 (362)
++|+++++..+|+++|.+||+++++.
T Consensus 160 a~W~~v~~l~~L~~dH~~Il~~a~~~ 185 (186)
T cd03670 160 VRWQDIDSKLPLYANHSQFLKKVAEL 185 (186)
T ss_pred eEEEEcccccccccCHHHHHHHHHHh
Confidence 99999996556999999999999875
No 3
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.62 E-value=5e-15 Score=129.90 Aligned_cols=110 Identities=25% Similarity=0.389 Sum_probs=78.7
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++||++| .|.|+||||+|+.||++++||.||++||||+++.. ++ -..+|..-.+|||
T Consensus 22 ~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~-----------~~------~~~v~~~~~rd~r- 83 (145)
T COG1051 22 RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRV-----------LE------LLAVFDDPGRDPR- 83 (145)
T ss_pred EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccc-----------ee------EEEEecCCCCCCc-
Confidence 6899999 58899999999999999999999999999998542 11 2345533323333
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC-----CCcCHHHHHHHHHHHh
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT-----FNPTHKTFMKVVTDIH 309 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp-----L~asH~~iL~~a~~~~ 309 (362)
.|..++++......|+ .....++++..+.|+++++ ++ +.+.|.++++......
T Consensus 84 ---~~~v~~~~~~~~~~g~----~~~~~~~d~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~~~ 141 (145)
T COG1051 84 ---GHHVSFLFFAAEPEGE----LLAGDGDDAAEVGWFPLDE-LPELPLPLAFTLADLRRLFLGRL 141 (145)
T ss_pred ---eeEEEEEEEEEecCCC----cccCChhhHhhcceecHhH-cccccccccccHHHHHHHHhhcc
Confidence 4666666655554442 2333345889999999994 43 5688988888776544
No 4
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.56 E-value=2.5e-14 Score=141.68 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=83.0
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|+||||+|++||++.+||+||+.||||+++... .+...+. ...+| ++|..
T Consensus 215 ~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~---------~l~~~~~--~~~~f----~~p~r 279 (340)
T PRK05379 215 HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP---------VLRGSIR--DQQVF----DHPGR 279 (340)
T ss_pred EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc---------ccceeee--eeEEE----cCCCC
Confidence 5899998 578999999999999999999999999999976431 1111111 12233 33433
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCC----CCCcCHHHHHHHHHH
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDM----TFNPTHKTFMKVVTD 307 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~l----pL~asH~~iL~~a~~ 307 (362)
+...|+.+++|.+....+.. ..+.+++|+.+++|+++++-. .++.+|..||+.++.
T Consensus 280 ~~~~~~i~~~f~~~~~~~~~---~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~~ 339 (340)
T PRK05379 280 SLRGRTITHAFLFEFPAGEL---PRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFLG 339 (340)
T ss_pred CCCCcEEEEEEEEEecCCcc---CccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHhc
Confidence 33467888888887655431 234567888999999999522 388999999988753
No 5
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.55 E-value=4.4e-14 Score=121.83 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=76.4
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDN 251 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDn 251 (362)
++|+++| .|.|++|||++++||++.+||.||++||||+.+... .+..+.. ....+.-+....++...
T Consensus 16 ~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~ 84 (138)
T cd03674 16 KVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGL---------RPLSVLV--DLDVHPIDGHPKRGVPG 84 (138)
T ss_pred eEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccc---------eeccccc--cceeEeecCCCCCCCCC
Confidence 6889988 789999999999999999999999999999975420 0000000 01111111011111123
Q ss_pred cEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCC--CCCCcCHHHHHHHHH
Q psy13138 252 AWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSD--MTFNPTHKTFMKVVT 306 (362)
Q Consensus 252 AWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~--lpL~asH~~iL~~a~ 306 (362)
.|...++|.+....+. ..+...+|+.+++|+++++- ++++.+|+.+|..++
T Consensus 85 ~~~~~~~y~~~~~~~~----~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 85 HLHLDLRFLAVAPADD----VAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred cEEEEEEEEEEccCcc----ccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 4555566777654442 12224567889999999953 347899999999875
No 6
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.6e-13 Score=115.64 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=65.1
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|+||||++++||++.+||+||+.||||+.+... ++ ..++..+..+
T Consensus 15 ~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~------------~~-----~~~~~~~~~~--- 74 (125)
T cd04679 15 KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST------------RL-----LCVVDHIIEE--- 74 (125)
T ss_pred EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc------------eE-----EEEEeecccC---
Confidence 5788887 489999999999999999999999999999976531 11 1111111111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC--CCcCHHH
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT--FNPTHKT 300 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp--L~asH~~ 300 (362)
+..+....+|.+....+. ......++..+++|++++ +++ +...++.
T Consensus 75 -~~~~~~~~~f~~~~~~~~----~~~~~~~E~~~~~W~~~~-~l~~~l~~~~~~ 122 (125)
T cd04679 75 -PPQHWVAPVYLAENFSGE----PRLMEPDKLLELGWFALD-ALPQPLTRATRD 122 (125)
T ss_pred -CCCeEEEEEEEEeecCCc----cccCCCccccEEEEeCHH-HCCchhHHHHHH
Confidence 222345556666554442 122234567889999999 554 4444443
No 7
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4.5e-13 Score=113.02 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=60.2
Q ss_pred EEEEEEe---CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCC
Q psy13138 174 EFVTVKF---NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTD 250 (362)
Q Consensus 174 evLlIkR---~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTD 250 (362)
++|+++| .|.|+||||++++||++.+||+||++||||+++... .+ ..+.. +.-.+...+
T Consensus 15 ~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~------------~~-----~~~~~-~~~~~~~~~ 76 (125)
T cd04696 15 RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI------------KF-----AMVQE-AIFSEEFHK 76 (125)
T ss_pred CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccccc------------ce-----EEEEE-EeccCCCCC
Confidence 4677877 689999999999999999999999999999976531 01 01111 111111112
Q ss_pred ccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 251 NAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 251 nAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
...+..+.|.+....+ .+..+++..+++|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~e~~~~~W~~~~e 110 (125)
T cd04696 77 PAHFVLFDFFARTDGT------EVTPNEEIVEWEWVTPEE 110 (125)
T ss_pred ccEEEEEEEEEEecCC------cccCCcccceeEEECHHH
Confidence 2334445555554332 334566788999999995
No 8
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.47 E-value=3.2e-13 Score=113.55 Aligned_cols=110 Identities=16% Similarity=0.319 Sum_probs=71.1
Q ss_pred eEEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCC
Q psy13138 173 LEFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTD 250 (362)
Q Consensus 173 LevLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTD 250 (362)
.++|+++| .+.|.||||++++||++.+||.||+.||||+.+... ..+ +...|. + .++ ..
T Consensus 16 ~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~-----------~~~----~~~~~~-~-~~~--~~ 76 (131)
T cd03673 16 IEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG-----------DPL----GTIRYW-F-SSS--GK 76 (131)
T ss_pred eEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec-----------ceE----EEEEEe-c-cCC--CC
Confidence 47899998 669999999999999999999999999999976531 111 111121 1 110 11
Q ss_pred ccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC---CCcCHHHHHHHHH
Q psy13138 251 NAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT---FNPTHKTFMKVVT 306 (362)
Q Consensus 251 nAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp---L~asH~~iL~~a~ 306 (362)
........|.+...++. ..+...++..+++|+++++ +. .+++.+.+|+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~----~~~~~~~E~~~~~W~~~~e-l~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 77 RVHKTVHWWLMRALGGE----FTPQPDEEVDEVRWLPPDE-ARDRLSYPNDRELLRAAL 130 (131)
T ss_pred CcceEEEEEEEEEcCCC----cccCCCCcEEEEEEcCHHH-HHHHcCCHhHHHHHHHhh
Confidence 22334444555554442 1222456778899999994 43 5667777777653
No 9
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.46 E-value=3.1e-13 Score=115.31 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=72.6
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|++|||+|+.||++.+||+||+.||||+.+... +++ +...+. .+
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~------------~~~---~~~~~~----~~-- 71 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL------------KLV---GIIKFP----FP-- 71 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc------------eEE---EEEEEE----cC--
Confidence 6888888 478999999999999999999999999999976531 111 122221 11
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHHHHHH
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKVVTDI 308 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~a~~~ 308 (362)
.+...+...+|.+....+. +...++...++|+++++ .++++++|+.+++.+++.
T Consensus 72 ~~~~~~~~~~f~~~~~~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 127 (137)
T cd03427 72 GEEERYGVFVFLATEFEGE------PLKESEEGILDWFDIDDLPLLPMWPGDREWLPLMLEK 127 (137)
T ss_pred CCCcEEEEEEEEECCcccc------cCCCCccccceEEcHhhcccccCCCCcHHHHHHHhCC
Confidence 1123344444544443331 22234456799999994 345899999999998853
No 10
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.45 E-value=6.2e-13 Score=118.50 Aligned_cols=97 Identities=23% Similarity=0.279 Sum_probs=62.2
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEec-ccccCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRG-YMKDER 247 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~g-yvdDpR 247 (362)
+||++|| .|.|+||||+|++||++.+||+||++||||+.+... ..++ ..++.. |...+.
T Consensus 30 ~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~----------~~~~-----~~~~~~~~~~~~~ 94 (159)
T PRK15434 30 EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPIT----------AGQF-----YGVWQHFYDDNFS 94 (159)
T ss_pred EEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccc----------cceE-----EEEEEeecccccC
Confidence 6899998 489999999999999999999999999999976421 0111 122211 111111
Q ss_pred CCC-ccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 248 NTD-NAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 248 NTD-nAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
..+ ......++|.+....+. +.+ .+++..+++|+++++
T Consensus 95 ~~~~~~~~i~~~f~~~~~~g~----~~~-~~~E~~~~~W~~~~e 133 (159)
T PRK15434 95 GTDFTTHYVVLGFRLRVAEED----LLL-PDEQHDDYRWLTPDA 133 (159)
T ss_pred CCccceEEEEEEEEEEecCCc----ccC-ChHHeeEEEEEeHHH
Confidence 111 12344556666655442 122 345688999999994
No 11
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.43 E-value=1.1e-12 Score=114.36 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=65.2
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|++|| .|.|+||||+|++||++.+||+||++||||+.+... .+ .++.. ....|......+
T Consensus 25 ~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~---------~~-~~l~~-~~~~~~~~~~~~-- 91 (144)
T cd03430 25 QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLIS---------DA-ELLGV-FEHFYDDNFFGD-- 91 (144)
T ss_pred eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccc---------cc-eEEEE-EEEEeccccccC--
Confidence 6889988 688999999999999999999999999999976531 00 11110 111221110001
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
....++...+|.+....+. ....+++..+++|++++ +++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~W~~~~-el~ 130 (144)
T cd03430 92 DFSTHYVVLGYVLKLSSNE-----LLLPDEQHSEYQWLTSD-ELL 130 (144)
T ss_pred CCccEEEEEEEEEEEcCCc-----ccCCchhccEeEEecHH-HHh
Confidence 1113566666766665542 13346678899999999 554
No 12
>PLN02325 nudix hydrolase
Probab=99.43 E-value=1.2e-12 Score=114.39 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=67.8
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|+||||+|+.||++.+||+||++||||+++... ++ ..++.....++
T Consensus 21 ~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~------------~~-----l~~~~~~~~~~-- 81 (144)
T PLN02325 21 SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI------------EL-----LTVTNNVFLEE-- 81 (144)
T ss_pred EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce------------EE-----EEEecceeecC--
Confidence 5788888 479999999999999999999999999999986531 11 11221111111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC--CCcCHHHHHHH
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT--FNPTHKTFMKV 304 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp--L~asH~~iL~~ 304 (362)
.+..+...++|.+...++... ......++..+++|++++ +|| ++..|+.+++.
T Consensus 82 ~~~~~~i~~~f~~~~~~~~~~--~~~~e~~e~~~~~W~~~d-~Lp~~~~~p~~~~~~~ 136 (144)
T PLN02325 82 PKPSHYVTVFMRAVLADPSQV--PQNLEPEKCYGWDWYEWD-NLPEPLFWPLEKLVGS 136 (144)
T ss_pred CCCcEEEEEEEEEEECCCCCC--CCcCCchhcCceEEEChH-HCChhhhHHHHHHHHc
Confidence 122344555555554333211 111123445779999999 777 55666555443
No 13
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.2e-12 Score=111.65 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=72.4
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCC
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNT 249 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNT 249 (362)
++|+++| .|.|.+|||++++||++.+||+||++||||+++.. +. .... ....| . ++
T Consensus 15 ~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~-----------~~-~~~~-~~~~~---~-~~--- 74 (131)
T cd04695 15 KVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPE-----------LY-NADY-LEQFY---E-AN--- 74 (131)
T ss_pred EEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccc-----------cc-cccc-eeeEe---e-cC---
Confidence 6889998 68999999999999999999999999999997642 10 0000 01222 1 11
Q ss_pred CccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCC--CCCcCHHHHHHHHHH
Q psy13138 250 DNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDM--TFNPTHKTFMKVVTD 307 (362)
Q Consensus 250 DnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~l--pL~asH~~iL~~a~~ 307 (362)
++.+....+|.+....+. .....++..+++|+++++.+ ..++.++.+++.+..
T Consensus 75 ~~~~~~~~~f~~~~~~~~-----~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd04695 75 DNRILMAPVFVGFVPPHQ-----EVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR 129 (131)
T ss_pred CceEEEEEEEEEEecCCC-----ccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence 222333444544443332 12334678899999999533 377899999888764
No 14
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=8.9e-13 Score=111.50 Aligned_cols=106 Identities=25% Similarity=0.467 Sum_probs=66.6
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEec--ccccCCCC
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRG--YMKDERNT 249 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~g--yvdDpRNT 249 (362)
++|+++| .+.|.||||+|++||++.+||.||+.||||+.+... . + ..++.+ +...+.+.
T Consensus 20 ~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~-----------~-~-----~~~~~~~~~~~~~~~~ 82 (132)
T cd04677 20 EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEEL-----------E-L-----LGVYSGKEFYVKPNGD 82 (132)
T ss_pred CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeee-----------E-E-----EEEecCCceeecCCCC
Confidence 5788888 678999999999999999999999999999876531 0 0 111111 00112222
Q ss_pred CccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC--CCcCHHHHH
Q psy13138 250 DNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT--FNPTHKTFM 302 (362)
Q Consensus 250 DnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp--L~asH~~iL 302 (362)
...++...++.....++. .....++..+++|++++ +++ +...|+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~W~~~~-e~~~~~~~~~~~~~ 131 (132)
T cd04677 83 DEQYIVTLYYVTKVFGGK-----LVPDGDETLELKFFSLD-ELPELINPQHKEML 131 (132)
T ss_pred cEEEEEEEEEEEeccCCc-----ccCCCCceeeEEEEChh-HCccchhHHHHHhh
Confidence 223455555544443331 12235567889999999 554 455565555
No 15
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.39 E-value=3.2e-12 Score=107.04 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=61.0
Q ss_pred EEEEEEe-C----CeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-N----GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-~----g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| . |.|+||||+|++||++.+||+||+.||||+++... . ++ +...+..+ ++..
T Consensus 12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-----------~-~~---~~~~~~~~--~~~~ 74 (128)
T cd04684 12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-----------R-RL---GSASRYFY--SPDG 74 (128)
T ss_pred EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-----------e-ee---eEEEEEEE--CCCC
Confidence 6889998 2 89999999999999999999999999999976421 1 11 11111111 1111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
.-......++|.+....+... .....++..+++|+++++
T Consensus 75 ~~~~~~~~~~f~~~~~~~~~~---~~~~~~e~~~~~W~~~~~ 113 (128)
T cd04684 75 DYDAHHLCVFYDARVVGGALP---VQEPGEDSHGAAWLPLDE 113 (128)
T ss_pred CeeccEEEEEEEEEEecCccc---cCCCCCCceeeEEECHHH
Confidence 001234455555555443210 123455677899999994
No 16
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.37 E-value=2.2e-12 Score=109.00 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=69.7
Q ss_pred eEEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCc
Q psy13138 173 LEFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDN 251 (362)
Q Consensus 173 LevLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDn 251 (362)
.++|+++| .+.|.||||++++||++.+||.||+.||||+.+.. +..+ .. ....+ .+ ... +
T Consensus 17 ~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~-----------~~~~-~~-~~~~~-~~--~~~--~- 77 (130)
T cd03428 17 IEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQ-----------LFIV-LG-FKETL-NY--QVR--G- 77 (130)
T ss_pred ceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhh-----------hhhh-cc-ceeEE-Ec--ccc--C-
Confidence 57899999 69999999999999999999999999999997642 1111 00 01111 11 111 1
Q ss_pred cEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC--CCcCHHHHHHHHH
Q psy13138 252 AWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT--FNPTHKTFMKVVT 306 (362)
Q Consensus 252 AWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp--L~asH~~iL~~a~ 306 (362)
.......|.++...+. .+..+++..+++|+++++-.. .+.+.+.+++++.
T Consensus 78 ~~~~~~~f~~~~~~~~-----~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 78 KLKTVTYFLAELRPDV-----EVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred cceEEEEEEEEeCCCC-----ccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 1233444555554222 222336778899999994222 3566777777664
No 17
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=8.7e-12 Score=105.01 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDN 251 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDn 251 (362)
++|++++ .|.|.||||+|++||++.+||+||+.||||+.+.. .++ ..++......+... .
T Consensus 14 ~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~------------~~~-----~~~~~~~~~~~~~~-~ 75 (123)
T cd04672 14 KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKV------------RKL-----AAVDDRNKHHPPPQ-P 75 (123)
T ss_pred EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeE------------eEE-----EEEeccccccCCCC-c
Confidence 5778887 89999999999999999999999999999997643 111 11111110111101 1
Q ss_pred cEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 252 AWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 252 AWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
..+...+|.++...+ .+...++..+++|++++ +++
T Consensus 76 ~~~~~~~f~~~~~~~------~~~~~~E~~~~~W~~~~-el~ 110 (123)
T cd04672 76 YQVYKLFFLCEILGG------EFKPNIETSEVGFFALD-DLP 110 (123)
T ss_pred eEEEEEEEEEEecCC------cccCCCceeeeEEECHH-HCc
Confidence 123445566665443 23334677889999999 554
No 18
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.36 E-value=2.6e-12 Score=110.84 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=37.5
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++|| .|.|+||||+|++||++.+||+||+.||||+.+.
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL 63 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence 5888887 3899999999999999999999999999999764
No 19
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=1.3e-11 Score=104.15 Aligned_cols=41 Identities=27% Similarity=0.180 Sum_probs=37.7
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .+.|.||||+|++||++.+||.||+.||||+++.
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~ 55 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIE 55 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCcee
Confidence 5788888 5899999999999999999999999999998765
No 20
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=6.1e-12 Score=106.40 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=37.4
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|++|||+++.||++.+||.||++||||+...
T Consensus 14 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 59 (130)
T cd04681 14 ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVT 59 (130)
T ss_pred cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccc
Confidence 5788888 4799999999999999999999999999998764
No 21
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.5e-11 Score=104.06 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.6
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|.+|||+|++||++.+||+||+.||||+++... . ...++..+..+
T Consensus 15 ~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-----------~------~~~~~~~~~~~--- 74 (129)
T cd04678 15 KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-----------Q------FLTVTNDVFEE--- 74 (129)
T ss_pred eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-----------E------EEEEEeEEeCC---
Confidence 5788887 689999999999999999999999999999976421 0 12222222111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
+..+..+++|.+....+... ......++..+++|++++ +++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~-~l~ 115 (129)
T cd04678 75 -EGKHYVTIFVKAEVDDGEAE--PNKMEPEKCEGWEWFDWE-ELP 115 (129)
T ss_pred -CCcEEEEEEEEEEeCCCCcc--cCCCCCceeCceEEeCHH-HCC
Confidence 22456677777666544211 111123556789999999 554
No 22
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.34 E-value=1.2e-11 Score=104.24 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=38.0
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .+.|.+|||++++||++.+||+||++||||+++.
T Consensus 13 ~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 13 KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVS 55 (125)
T ss_pred EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence 5889988 6899999999999999999999999999999764
No 23
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=1e-11 Score=103.20 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=65.6
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc-cchhhhHHHHHHHHHHhccCceEEEecccccCCCCC
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN-MTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTD 250 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~-~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTD 250 (362)
++|+++| .+.|.||||++++||++.+||+||+.||||+.+. . ..+ ...+.. ....
T Consensus 13 ~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~------------~~~-----~~~~~~---~~~~-- 70 (120)
T cd04680 13 RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVV------------AEL-----LGVYYH---SASG-- 70 (120)
T ss_pred eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccc------------cce-----EEEEec---CCCC--
Confidence 5788888 5689999999999999999999999999999764 2 111 122211 1111
Q ss_pred ccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC--CCcCHHHHHH
Q psy13138 251 NAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT--FNPTHKTFMK 303 (362)
Q Consensus 251 nAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp--L~asH~~iL~ 303 (362)
......+|.+....+. .....++..+++|++++ +++ +...++..|+
T Consensus 71 -~~~~~~~f~~~~~~~~-----~~~~~~E~~~~~w~~~~-~l~~~~~~~~~~~~~ 118 (120)
T cd04680 71 -SWDHVIVFRARADTQP-----VIRPSHEISEARFFPPD-ALPEPTTPATRRRIA 118 (120)
T ss_pred -CceEEEEEEecccCCC-----ccCCcccEEEEEEECHH-HCcccCChHHHHHhh
Confidence 1223345555544331 12345677889999999 665 5556655554
No 24
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=2.3e-11 Score=103.03 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=37.9
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhcccccc
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNM 215 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~ 215 (362)
++|+++| .+.|.||||+|++||++.+||+||+.||||+.+..
T Consensus 13 ~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~ 58 (128)
T cd04687 13 KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEI 58 (128)
T ss_pred EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcccc
Confidence 5888887 46799999999999999999999999999998753
No 25
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.31 E-value=1.7e-11 Score=106.65 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=70.9
Q ss_pred EEEEEEe---CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEeccc-----cc
Q psy13138 174 EFVTVKF---NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYM-----KD 245 (362)
Q Consensus 174 evLlIkR---~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyv-----dD 245 (362)
++|+++| .+.|.+|||.+|+||++.+||+||+.||||+..... .+. ++.......|.-+. ..
T Consensus 20 ~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (148)
T PRK09438 20 GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAE---------QLT-LIDCQRSIEYEIFPHWRHRYA 89 (148)
T ss_pred eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcccc---------cee-ecccccccccccchhhhhccc
Confidence 4788887 578999999999999999999999999999986321 000 10000000111010 01
Q ss_pred CCCCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCC--CCCCcCHHHHHHHHHHHh
Q psy13138 246 ERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSD--MTFNPTHKTFMKVVTDIH 309 (362)
Q Consensus 246 pRNTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~--lpL~asH~~iL~~a~~~~ 309 (362)
+. .......+|.+....+. .+.. +|..+++|+++++. +.++++++.+|+.+.+++
T Consensus 90 ~~---~~~~~~~~f~~~~~~~~-----~~~~-~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 90 PG---VTRNTEHWFCLALPHER-----PVVL-TEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL 146 (148)
T ss_pred cc---cCCceeEEEEEecCCCC-----cccc-CcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence 11 01123344444433221 2222 36788999999953 337889999998877654
No 26
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=2.1e-11 Score=102.22 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=36.7
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
++|+++| .|.|+||||+|++||++.+||+||+.||||+..
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 58 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDP 58 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCc
Confidence 5788887 378999999999999999999999999999975
No 27
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.30 E-value=2.6e-11 Score=103.02 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=38.9
Q ss_pred eEEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 173 LEFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 173 LevLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
.++|++++ .+.|.||||+|+.||++.+||+||+.||||+...
T Consensus 15 ~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~ 58 (122)
T cd04666 15 VEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGK 58 (122)
T ss_pred eEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCccc
Confidence 57999998 6899999999999999999999999999999754
No 28
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=2.6e-11 Score=101.09 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=37.2
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|+||||+|++||++.+||+||+.||||+.+.
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 5788887 4789999999999999999999999999999764
No 29
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.30 E-value=3.8e-12 Score=111.48 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=37.9
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++++ .+.|+||||++++||++.+||+||+.||||+.+.
T Consensus 15 ~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~ 57 (145)
T cd03672 15 KVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDIS 57 (145)
T ss_pred EEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccce
Confidence 5889988 7799999999999999999999999999999764
No 30
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=3.5e-11 Score=100.05 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=37.4
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .+.|.+|||++++||++.+||+||+.||||+++.
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~ 57 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE 57 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEee
Confidence 4788887 4789999999999999999999999999999865
No 31
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.29 E-value=1e-11 Score=106.67 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=63.9
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhcc-C-ceEEEecccccC-
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDD-N-CHFVYRGYMKDE- 246 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~-~-g~~vy~gyvdDp- 246 (362)
++|++|+ .|.|+||||.|++||++.+||+||+.||||+.+... ++.. + +...|. | +.+
T Consensus 14 ~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~-------------~i~~~~~~~~~~~-~-~~~~ 78 (132)
T cd04661 14 LVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAK-------------FYGNAPVGFYKYK-Y-PKAV 78 (132)
T ss_pred EEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEE-------------EEEecCcEEEEEe-c-Cccc
Confidence 6899998 378999999999999999999999999999975431 1100 0 122221 1 111
Q ss_pred CCCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 247 RNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 247 RNTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
.+.+.....+.+|.++..+|. +..+++..+++|++.+ +++
T Consensus 79 ~~~~~~~~~~~~f~~~~~~g~------~~~~~e~~~~~W~~~~-el~ 118 (132)
T cd04661 79 RNEGIVGAKVFFFKARYMSGQ------FELSQNQVDFKWLAKE-ELQ 118 (132)
T ss_pred ccccCcccEEEEEEEEEecCc------cccCCCcceeEecCHH-HHH
Confidence 011222345566667766663 2334677899999999 554
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=1.4e-11 Score=102.24 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=61.4
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDN 251 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDn 251 (362)
++|+++| .+.|+||||++++||++.+||.||+.||||+..... .+. ....+... .++..+
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~---------~~~------~~~~~~~~---~~~~~~ 74 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPD---------SLE------YLGTFRAP---AANEPG 74 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChh---------heE------EEEEEecc---cccCCC
Confidence 5788888 789999999999999999999999999999875420 011 12222111 111122
Q ss_pred cEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 252 AWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 252 AWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
.++...+|.+.... .+...++..+++|+++++
T Consensus 75 ~~~~~~~f~~~~~~-------~~~~~~e~~~~~W~~~~e 106 (118)
T cd04690 75 VDVRATVYVAELTG-------EPVPAAEIEEIRWVDYDD 106 (118)
T ss_pred cEEEEEEEEEcccC-------CcCCCchhhccEEecHHH
Confidence 45566666555432 233456778899999994
No 33
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.29 E-value=2.6e-11 Score=103.27 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=62.0
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|.||||+||+||++.+|++||+.||||+++... ++ ..+| +.+.
T Consensus 25 ~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~------------~~-----~~~~----~~~~- 82 (130)
T cd04511 25 KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID------------GL-----YAVY----SVPH- 82 (130)
T ss_pred EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee------------eE-----EEEE----ecCC-
Confidence 5888887 689999999999999999999999999999976431 11 1222 1221
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
.....++|.+....+ .+..+.+..+++|++++ +++
T Consensus 83 ---~~~~~~~f~~~~~~~------~~~~~~e~~~~~~~~~~-~l~ 117 (130)
T cd04511 83 ---ISQVYMFYRARLLDL------DFAPGPESLEVRLFTEE-EIP 117 (130)
T ss_pred ---ceEEEEEEEEEEcCC------cccCCcchhceEEECHH-HCC
Confidence 123455566555443 23345667789999999 776
No 34
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=1.5e-11 Score=101.95 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=38.2
Q ss_pred EEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.+|||+|++||++.+||.||+.||||+...
T Consensus 12 ~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~ 53 (112)
T cd04667 12 RVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGLQGL 53 (112)
T ss_pred EEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCccc
Confidence 5899999 8999999999999999999999999999998753
No 35
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.26 E-value=4.6e-11 Score=103.78 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=60.6
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .|.|.||||+|++||++.+||+||++||||+.+... +. ...|....+
T Consensus 26 ~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~------------~~-----~~~~~~~~~---- 84 (142)
T cd04700 26 DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV------------KF-----LGTYLGRFD---- 84 (142)
T ss_pred cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc------------EE-----EEEEEEEcC----
Confidence 5788887 478999999999999999999999999999976431 11 122221111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
+..++...+|.+....+. .....+++..+++|+++++
T Consensus 85 -~~~~~~~~~f~~~~~~~~----~~~~~~~E~~~~~w~~~~e 121 (142)
T cd04700 85 -DGVLVLRHVWLAEPEGQT----LAPKFTDEIAEASFFSRED 121 (142)
T ss_pred -CCcEEEEEEEEEEecCCc----cccCCCCCEEEEEEECHHH
Confidence 123444555655543321 1233356788999999993
No 36
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=4.8e-11 Score=99.51 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=38.0
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.||||++++||++.+||+||+.||||++..
T Consensus 15 ~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~ 57 (129)
T cd04676 15 RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVE 57 (129)
T ss_pred eEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeE
Confidence 5788898 7899999999999999999999999999999764
No 37
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.26 E-value=4.9e-11 Score=101.51 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=61.1
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCC
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNT 249 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNT 249 (362)
++|+++| .+.|.||||++++||++.+||+||+.||||+++... .+. +...+. . .+
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~------------~~~---~~~~~~----~-~~- 70 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT------------ALL---GIYQWT----A-PD- 70 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc------------eEE---EEEEee----c-CC-
Confidence 5889998 468999999999999999999999999999976421 111 111111 1 11
Q ss_pred CccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCC
Q psy13138 250 DNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMT 293 (362)
Q Consensus 250 DnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lp 293 (362)
+..+...++|.+....+. .....+++..++.|++++ +++
T Consensus 71 ~~~~~~~~~f~~~~~~~~----~~~~~~~e~~~~~w~~~~-el~ 109 (134)
T cd03675 71 SDTTYLRFAFAAELLEHL----PDQPLDSGIVRAHWLTLE-EIL 109 (134)
T ss_pred CCeeEEEEEEEEEECCCC----CCCCCCCCceeeEEEeHH-HHH
Confidence 123444555655554332 111234567789999999 554
No 38
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.26 E-value=3.8e-11 Score=102.14 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=71.9
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|++|| .|.|.||||.+++||+..+|++||+.||||+.+... .++ ..++..
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~------------~~~-----~~~~~~----- 73 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG------------EYV-----ASHQRE----- 73 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc------------eeE-----EEEEEe-----
Confidence 5788888 378999999999999999999999999999876431 111 111111
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHHHHHHhcCc
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKVVTDIHGAH 312 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~a~~~~~a~ 312 (362)
-++..| ...+|.+....+. +. ..+..+++|+++++ .+++.+.++.+|+.+.+...+.
T Consensus 74 ~~~~~~-~~~~~~~~~~~~~------~~-~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~~ 132 (135)
T PRK10546 74 VSGRRI-HLHAWHVPDFHGE------LQ-AHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRAAR 132 (135)
T ss_pred cCCcEE-EEEEEEEEEecCc------cc-ccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhccC
Confidence 112222 2334444443332 11 12345789999995 3458899999999887765543
No 39
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=2.8e-11 Score=102.81 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=63.9
Q ss_pred EEEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC
Q psy13138 174 EFVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN 248 (362)
Q Consensus 174 evLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN 248 (362)
++|+++| .+.|.||||+|+.||++.+||+||++||||+++... ++ ..++ ..+
T Consensus 13 ~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~------------~~-----~~~~----~~~-- 69 (123)
T cd04671 13 EVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT------------TL-----LSVE----EQG-- 69 (123)
T ss_pred EEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc------------eE-----EEEE----ccC--
Confidence 5788887 578999999999999999999999999999987531 11 1111 111
Q ss_pred CCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCCCCcCHHHH
Q psy13138 249 TDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTF 301 (362)
Q Consensus 249 TDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lpL~asH~~i 301 (362)
..|+ ..+|.++..+|. +. .....+++..+++|++++ ++++......+
T Consensus 70 --~~~~-~~~f~a~~~~g~-~~-~~~~~~~e~~~~~W~~~~-el~~~~~~~~~ 116 (123)
T cd04671 70 --GSWF-RFVFTGNITGGD-LK-TEKEADSESLQARWYSNK-DLPLPLRAHDI 116 (123)
T ss_pred --CeEE-EEEEEEEEeCCe-Ec-cCCCCCcceEEEEEECHH-HCCCccchhee
Confidence 1244 345555655442 11 011123456689999999 67754444333
No 40
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.25 E-value=2.5e-11 Score=101.73 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=38.1
Q ss_pred EEEEEEe--C-----CeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--N-----GEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~-----g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
+||+++| . +.|.+|||.+++||++.+||+||+.||||+.+.
T Consensus 15 ~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~ 62 (134)
T PF00293_consen 15 KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVS 62 (134)
T ss_dssp EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEE
T ss_pred EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceec
Confidence 7999999 2 789999999999999999999999999999864
No 41
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=1.1e-10 Score=99.81 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=37.2
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
+||++++ .+.|.||||.|++||++.+||+||++||||+.+
T Consensus 12 ~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 12 KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 5888888 589999999999999999999999999999975
No 42
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=1e-10 Score=98.61 Aligned_cols=42 Identities=29% Similarity=0.329 Sum_probs=38.2
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhcccccc
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNM 215 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~ 215 (362)
++|+++| .+.|.||||.|++||++.+||+||++||||+.+..
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRV 58 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEee
Confidence 6899998 36899999999999999999999999999998753
No 43
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.19 E-value=2.5e-10 Score=99.45 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=38.0
Q ss_pred EEEEEEe---CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF---NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR---~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .+.|+||||++++||++.+||.||++||||+.+.
T Consensus 16 ~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~ 59 (147)
T cd03671 16 KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPD 59 (147)
T ss_pred EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcC
Confidence 6899999 3699999999999999999999999999999864
No 44
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.19 E-value=2.7e-10 Score=97.93 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=38.9
Q ss_pred eeEEEEEEe---------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 172 LLEFVTVKF---------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 172 vLevLlIkR---------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
.++|||++| .+.|.||||+++.||++.+||+||+.||||++..
T Consensus 14 ~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 14 RIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred cEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 378999972 6899999999999999999999999999999754
No 45
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.17 E-value=1.4e-10 Score=102.43 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=38.3
Q ss_pred eEEEEEEe-------CCeeeCceeecCCC-CCHHHHHHHHHHHHhccccc
Q psy13138 173 LEFVTVKF-------NGEWGIPGGFIEGK-ETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 173 LevLlIkR-------~g~WaLPGG~Vd~G-Esl~~aa~REl~EEtGl~~~ 214 (362)
.++|++|| .|.|+||||+|++| |++.+||+||++||||+...
T Consensus 16 ~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~ 65 (157)
T cd03426 16 LRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD 65 (157)
T ss_pred eEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc
Confidence 47899998 47899999999999 99999999999999999754
No 46
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.16 E-value=1.7e-10 Score=102.11 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=70.6
Q ss_pred EEEEEEe---CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCC--
Q psy13138 174 EFVTVKF---NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERN-- 248 (362)
Q Consensus 174 evLlIkR---~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRN-- 248 (362)
++|+++| .+.|.||||++++||++.+||.||+.||||+..... ..+-.......|. .|.+
T Consensus 21 ~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~-----------~~~~~~~~~~~y~----~~~~~~ 85 (156)
T PRK00714 21 QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV-----------EILAETRDWLRYD----LPKRLV 85 (156)
T ss_pred EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccce-----------EEEEEcCCeEEec----CcHHHh
Confidence 5888888 589999999999999999999999999999976420 0000000011110 0100
Q ss_pred --CCccEE--EEEEEEEEecCCCcccccCCC--CCCcccceEEEecCCCCC--CCcCHHHHHHHHHHHh
Q psy13138 249 --TDNAWV--EGAVTTVHDKKGEHFMALPLS--PGDGAEDVKWLIVHSDMT--FNPTHKTFMKVVTDIH 309 (362)
Q Consensus 249 --TDnAWi--etva~~~h~~~g~~~~~~~l~--a~dda~~v~W~~vd~~lp--L~asH~~iL~~a~~~~ 309 (362)
.....+ ..+.|.+....+.. ...+. ..++..+++|++++ +++ +....+.+++.+++.+
T Consensus 86 ~~~~~~~~~~~~~~fl~~~~~~~~--~~~l~~~~~~E~~~~~W~~~d-el~~~~~~~~r~~~~~~~~~~ 151 (156)
T PRK00714 86 RRSKGVYRGQKQKWFLLRLTGDDS--EINLNTTSHPEFDAWRWVSYW-YPLDQVVPFKRDVYRRVLKEF 151 (156)
T ss_pred hccCCcccCcEEEEEEEEecCCCc--cccCCCCCCCCeeeeEeCCHH-HHHHhchhhhHHHHHHHHHHH
Confidence 000011 23344444322211 12232 23577899999999 444 4466688888888765
No 47
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.15 E-value=1.9e-10 Score=98.56 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.7
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|+||||+++.||++.+||.||+.||||+...
T Consensus 13 ~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 13 RILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVK 57 (131)
T ss_pred EEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceee
Confidence 6888888 5899999999999999999999999999999764
No 48
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.14 E-value=4e-10 Score=107.77 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=65.6
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCC
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNT 249 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNT 249 (362)
++|++++ .|.|++|||+||+||++++|++||+.||||+++.. +. .+ +...+ ..|.
T Consensus 144 ~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~-----------~~-~~---~s~~~----~~p~-- 202 (256)
T PRK00241 144 EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKN-----------LR-YV---GSQPW----PFPH-- 202 (256)
T ss_pred EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeee-----------eE-EE---EeEee----cCCC--
Confidence 6788887 68999999999999999999999999999997642 11 11 11111 1121
Q ss_pred CccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCCCCCCCcCHHHHHHHHH
Q psy13138 250 DNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVT 306 (362)
Q Consensus 250 DnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~~lpL~asH~~iL~~a~ 306 (362)
...++|.+...+++ +.+ ..+|..+++|++++ +++..+....|.....
T Consensus 203 ----~lm~~f~a~~~~~~----~~~-~~~Ei~~a~W~~~d-el~~lp~~~sia~~li 249 (256)
T PRK00241 203 ----SLMLGFHADYDSGE----IVF-DPKEIADAQWFRYD-ELPLLPPSGTIARRLI 249 (256)
T ss_pred ----eEEEEEEEEecCCc----ccC-CcccEEEEEEECHH-HCcccCCchHHHHHHH
Confidence 23345555554442 222 23577889999999 6664444334444443
No 49
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.12 E-value=4.4e-10 Score=93.96 Aligned_cols=103 Identities=21% Similarity=0.323 Sum_probs=65.4
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|+++| .|.|.||||++++||++.+||.||+.||||+++... ..+.. ...+|
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~------------~~~~~-~~~~~-------- 75 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA------------TLFEK-LEYEF-------- 75 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc------------eEEEE-EEeeC--------
Confidence 5788888 489999999999999999999999999999865320 11110 11111
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHHHH
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKVVT 306 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~a~ 306 (362)
++..|. ..+|.+....+. +. ..+..+++|+++++ ..++...++.+++.+.
T Consensus 76 -~~~~~~-~~~~~~~~~~~~------~~-~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 76 -PDRHIT-LWFWLVESWEGE------PW-GKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred -CCcEEE-EEEEEEEEECCc------cC-CccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 222232 223344332221 11 23456789999994 2247788888887664
No 50
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=5.9e-10 Score=94.06 Aligned_cols=41 Identities=29% Similarity=0.544 Sum_probs=37.4
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.||||++++||++.+||.||+.||||+...
T Consensus 15 ~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~ 59 (127)
T cd04670 15 EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTE 59 (127)
T ss_pred eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 5788887 4899999999999999999999999999999764
No 51
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.09 E-value=3.5e-10 Score=95.10 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=37.3
Q ss_pred EEEEEEe--C------CeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--N------GEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~------g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| . |.|.||||+|+.||++.+||+||+.||||+.+.
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLP 61 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccc
Confidence 5788888 2 799999999999999999999999999999764
No 52
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.09 E-value=4.2e-10 Score=95.22 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=37.5
Q ss_pred EEEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 174 EFVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 174 evLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
++|+++| .|.|.+|||+++.||++.+||.||++||||+.+
T Consensus 16 ~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 16 RVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP 59 (129)
T ss_pred EEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCCh
Confidence 6899998 489999999999999999999999999999975
No 53
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.04 E-value=1.5e-09 Score=94.15 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=36.6
Q ss_pred EEEEEEe-------CCeeeC-ceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGI-PGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaL-PGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+.+| .|.|.+ |||+|++||++.+||+||+.||||+.+.
T Consensus 18 ~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~ 66 (144)
T cd04692 18 YVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVS 66 (144)
T ss_pred EEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5788888 478999 5999999999999999999999999764
No 54
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.03 E-value=1.8e-09 Score=96.13 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=36.0
Q ss_pred EEEEEEe-------CCeeeCc-eeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIP-GGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLP-GG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++|| .|.|.+| ||++++||++.+||+||++||||+.+.
T Consensus 43 ~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~ 91 (165)
T cd02885 43 RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGD 91 (165)
T ss_pred cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 4788888 4778885 799999999999999999999999865
No 55
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.02 E-value=1.6e-09 Score=89.26 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=64.4
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|+++| .|.|+||||+++.+|++.++|.||+.||||+.+.. . +.+ +...+ .
T Consensus 14 ~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~-----------~-~~~---~~~~~-------~ 71 (124)
T cd03425 14 RILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV-----------G-ELL---ATVEH-------D 71 (124)
T ss_pred EEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec-----------c-ceE---EEEEe-------e
Confidence 5788887 57899999999999999999999999999987542 0 111 11111 1
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHH
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKV 304 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~ 304 (362)
-++..|. ..+|.+....+ ... ..+..++.|+++++ .+++.+.++.+++.
T Consensus 72 ~~~~~~~-~~~~~~~~~~~------~~~-~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 72 YPDKRVT-LHVFLVELWSG------EPQ-LLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred CCCCeEE-EEEEEEeeeCC------Ccc-cccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 1122232 23333333222 111 23456789999995 34578888888764
No 56
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.00 E-value=2.5e-09 Score=87.12 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=59.8
Q ss_pred EEEEEEe-C---CeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCC
Q psy13138 174 EFVTVKF-N---GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNT 249 (362)
Q Consensus 174 evLlIkR-~---g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNT 249 (362)
++|+++| . |.|.+|||+++.||++.++|.||+.||+|+..... . ...++. |. .+.
T Consensus 13 ~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~------------~-----~~~~~~-~~-~~~-- 71 (123)
T cd02883 13 RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL------------R-----LLGVYE-VE-SPD-- 71 (123)
T ss_pred CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee------------e-----EEEEEE-ee-ccC--
Confidence 5788888 4 99999999999999999999999999999875310 0 112221 11 111
Q ss_pred CccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC
Q psy13138 250 DNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS 290 (362)
Q Consensus 250 DnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~ 290 (362)
+.......+|.++...+.. ......+...++|+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~~ 108 (123)
T cd02883 72 EGEHAVVFVFLARLVGGEP----TLLPPDEISEVRWVTLDE 108 (123)
T ss_pred CCceEEEEEEEEEeCCCCc----CCCCCCccceEEEEcHHH
Confidence 2234555666666544421 112234566789999983
No 57
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.00 E-value=9.5e-10 Score=92.11 Aligned_cols=41 Identities=29% Similarity=0.540 Sum_probs=36.6
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++|| .|.|.+|||++++||++.+||+||+.||||+.+.
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~ 61 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVT 61 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEE
Confidence 4778888 3579999999999999999999999999999764
No 58
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=2.6e-09 Score=89.57 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|+.+| .|.|.||||.++.||+..++++||+.||||+.+... +.... ..++|
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~------------~~~~~-~~h~~-------- 75 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS------------EFEKL-EYEFY-------- 75 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee------------eEEEE-EEEEC--------
Confidence 5788888 579999999999999999999999999999875421 11100 11122
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHHH
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKVV 305 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~a 305 (362)
++..| ...++.+...++. .. ..+..+++|+++++ ++++.+.++.+++.+
T Consensus 76 -~~~~~-~~~~~~~~~~~~~------~~-~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (128)
T TIGR00586 76 -PRHIT-LWFWLLERWEGGP------PG-KEGQPEEWWVLVGLLADDFFPAANPVIIKLL 126 (128)
T ss_pred -CCcEE-EEEEEEEEEcCCC------cC-cccccccEEeCHHHCCccCCCCCCHHHHHHH
Confidence 22223 2334444443331 11 22345689999884 334778888888643
No 59
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.97 E-value=2.7e-09 Score=91.07 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=36.5
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++++ .+.|.+|||+|+.||++.+||+||+.||||+.+.
T Consensus 15 ~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~ 61 (137)
T cd03424 15 KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAG 61 (137)
T ss_pred eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 5778765 3589999999999999999999999999999864
No 60
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.95 E-value=4.8e-10 Score=102.71 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=36.1
Q ss_pred EEEEEEe-------CCeeeCceeecCCC-CCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGK-ETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~G-Esl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|+|+||||.+|+| |++.+||+||+.||||+...
T Consensus 45 ~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~ 93 (190)
T PRK10707 45 TLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPS 93 (190)
T ss_pred EEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCcc
Confidence 6788886 68999999999985 67999999999999999753
No 61
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.92 E-value=7.3e-09 Score=87.81 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=36.0
Q ss_pred EEEEEEe-------CCeeeC-ceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGI-PGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaL-PGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.+ |||++++||++.+||+||+.||||+...
T Consensus 13 ~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~ 61 (126)
T cd04697 13 KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV 61 (126)
T ss_pred eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 5677887 477999 6999999999999999999999998753
No 62
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.91 E-value=1.1e-08 Score=86.89 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=61.2
Q ss_pred EEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCcc
Q psy13138 174 EFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNA 252 (362)
Q Consensus 174 evLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnA 252 (362)
++|++++ .+.|.||||++++||++.+||+||+.||||+.... +. ....|. -++ ...
T Consensus 12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~-----------~~------~l~~~~---~~~---~~~ 68 (118)
T cd04665 12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGS-----------LT------LVGYYQ---VDL---FES 68 (118)
T ss_pred EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCCccCc-----------eE------EEEEEE---ecC---CCC
Confidence 5788888 78999999999999999999999999999997632 11 112221 111 113
Q ss_pred EEEEEEEEEEecCCCcccccCCCCCCcccceEEEecC
Q psy13138 253 WVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVH 289 (362)
Q Consensus 253 Wietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd 289 (362)
+....+|......+. ...+..+.....|++..
T Consensus 69 ~~~~~~y~a~~~~~~-----~~~~~~E~~~~~~~~~~ 100 (118)
T cd04665 69 GFETLVYPAVSAQLE-----EKASYLETDGPVLFKNE 100 (118)
T ss_pred cEEEEEEEEEEEecc-----cccccccccCcEEeccC
Confidence 556666665554442 33456778889999877
No 63
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.89 E-value=1.6e-08 Score=85.94 Aligned_cols=40 Identities=38% Similarity=0.613 Sum_probs=35.5
Q ss_pred EEEEEe-----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 175 FVTVKF-----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 175 vLlIkR-----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
+|+++| .|.|+||||+|++||++.+||+||+.||||+.+.
T Consensus 17 ~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 17 LLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 455665 5899999999999999999999999999999764
No 64
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=4.9e-09 Score=88.57 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=35.7
Q ss_pred EEEEEEe-------CCeeeCc-eeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIP-GGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLP-GG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.+| ||++++||++ +||+||+.||||+.+.
T Consensus 13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~ 60 (127)
T cd04693 13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELD 60 (127)
T ss_pred eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcC
Confidence 4678887 3799998 9999999999 9999999999999865
No 65
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.88 E-value=1.5e-08 Score=91.89 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEEe-------CCee-eCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEW-GIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~W-aLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+.+| .|.| .+|||+|++||++.+||+|||.||||+...
T Consensus 50 ~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~ 98 (180)
T PRK15393 50 KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGV 98 (180)
T ss_pred eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 4677777 2334 689999999999999999999999998743
No 66
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.85 E-value=3.2e-08 Score=85.16 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=38.4
Q ss_pred eeEEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 172 LLEFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 172 vLevLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
.+++|+++. .+.|.||||.|++||++.+||+||+.||||+..
T Consensus 13 ~~~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 13 VLELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred eEEEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 478888887 667999999999999999999999999999975
No 67
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.83 E-value=2e-08 Score=87.93 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=37.7
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| .|.|.||||++++||++.+||+||+.||+|+.+.
T Consensus 14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 6889988 4689999999999999999999999999999764
No 68
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.79 E-value=2.4e-08 Score=88.44 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.7
Q ss_pred EEEEEEe-------CCeeeCc-eeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGIP-GGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaLP-GG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+.|| .|.|.+| ||+++.|| .+||+||+.||||+.+.
T Consensus 40 ~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 40 QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 4788888 3888886 79999999 49999999999999765
No 69
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.78 E-value=3.7e-08 Score=89.41 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEEEEEe-C------CeeeCc-eeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-N------GEWGIP-GGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-~------g~WaLP-GG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+++| . |.|.+| ||++++||++.+||+||+.||||+...
T Consensus 47 ~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 47 RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 4788887 3 445443 699999999999999999999999764
No 70
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.77 E-value=3.4e-08 Score=85.26 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
++|++++ .+.|.+|||.|++||++.+||+||+.||||+.+
T Consensus 13 ~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 13 RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 4777776 257999999999999999999999999999976
No 71
>PLN02709 nudix hydrolase
Probab=98.72 E-value=1.1e-07 Score=89.15 Aligned_cols=63 Identities=22% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe-------CCeeeCceeecCCCC-CHHHHHHHHHHHHhcccc
Q psy13138 142 GPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF-------NGEWGIPGGFIEGKE-TYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 142 GPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR-------~g~WaLPGG~Vd~GE-sl~~aa~REl~EEtGl~~ 213 (362)
....||-.|...-.... +...+++|+++| .|+|+||||++|++| ++.+||.||+.||+|+..
T Consensus 30 ~~r~AAVLv~l~~~~~~----------~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~ 99 (222)
T PLN02709 30 PAKSSAVLVCLYQEQRE----------DKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDP 99 (222)
T ss_pred CCCccEEEEEEeeccCC----------CCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 44677777766421100 011368999998 699999999999975 789999999999999975
Q ss_pred c
Q psy13138 214 N 214 (362)
Q Consensus 214 ~ 214 (362)
.
T Consensus 100 ~ 100 (222)
T PLN02709 100 S 100 (222)
T ss_pred h
Confidence 4
No 72
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.72 E-value=9.7e-08 Score=86.70 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=36.4
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++++ ...|.||||.+|+||++.+||+||+.||||+...
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~ 106 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGAR 106 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 4777776 5679999999999999999999999999999764
No 73
>KOG2839|consensus
Probab=98.70 E-value=1.9e-08 Score=87.52 Aligned_cols=57 Identities=26% Similarity=0.189 Sum_probs=47.4
Q ss_pred ccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe---CCeeeCceeecCCCCCHHHHHHHHHHHHhcccccc
Q psy13138 145 HSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF---NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNM 215 (362)
Q Consensus 145 hAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR---~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~ 215 (362)
..+.||..|.+ +..+|||+|.- ...|-+|+|.+|++|+..+||.||..||+|+.-.+
T Consensus 10 ~vagCi~~r~~--------------~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l 69 (145)
T KOG2839|consen 10 LVAGCICYRSD--------------KEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKL 69 (145)
T ss_pred EEEEeeeeeec--------------CcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeee
Confidence 45667777633 22589999987 67899999999999999999999999999987654
No 74
>PRK08999 hypothetical protein; Provisional
Probab=98.62 E-value=1.6e-07 Score=91.41 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=64.9
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|+.|| .|.|.||||.++.||+..+++.||+.||||+.+... ..+.. ....|
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-----------~~l~~--~~h~~-------- 76 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA-----------RPLIT--VRHDY-------- 76 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc-----------eeEEE--EEEEc--------
Confidence 4788888 579999999999999999999999999999875421 11111 11111
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHHHH
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMKVV 305 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~~a 305 (362)
++..|. ..+|.+....+. +. +.+...++|+++++ ++++...++.+++.+
T Consensus 77 -~~~~~~-i~~y~~~~~~~~------~~-~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 77 -PDKRVR-LDVRRVTAWQGE------PH-GREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred -CCCeEE-EEEEEEEEecCc------cc-CccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 222233 233443332221 11 23445789999984 344777888877755
No 75
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.60 E-value=3.9e-07 Score=82.14 Aligned_cols=71 Identities=20% Similarity=0.035 Sum_probs=51.8
Q ss_pred ccccccccCccCCCccceEE-EEEeeecCCCCeEeccCCCCCeeEEEEEEe-------CCee-eCceeecCCCCCHHHHH
Q psy13138 131 GICGRGLLGRWGPNHSAFLI-VTRWFRDHNGDKVTMPSSGKPLLEFVTVKF-------NGEW-GIPGGFIEGKETYMDRG 201 (362)
Q Consensus 131 Gl~GRG~L~rwGPNhAad~V-VtRw~~~~~G~iv~~~~~~k~vLevLlIkR-------~g~W-aLPGG~Vd~GEsl~~aa 201 (362)
|...||.....|--|.+--| ++- .+++| ..++++.|| .|.| .+|||++++||++.+||
T Consensus 18 ~~~~r~~~~~~g~~h~~v~~~~~~--~~~~~-----------~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA 84 (180)
T cd03676 18 FEIERAASRLFGLVTYGVHLNGYV--RDEDG-----------GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETL 84 (180)
T ss_pred EEEEecccccCCceEEEEEEEEEE--EcCCC-----------CeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHH
Confidence 44556666666766666554 232 22221 246788888 6899 59999999999999999
Q ss_pred HHHHHHHhccccc
Q psy13138 202 RKEFLEEALNASN 214 (362)
Q Consensus 202 ~REl~EEtGl~~~ 214 (362)
+||+.||||+...
T Consensus 85 ~REl~EE~Gl~~~ 97 (180)
T cd03676 85 VKECDEEAGLPED 97 (180)
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999753
No 76
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.59 E-value=5.5e-07 Score=74.53 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=37.1
Q ss_pred eEEEEEEe--CC-eeeCceeecCCCCCHHH-HHHHHHHHHhccccc
Q psy13138 173 LEFVTVKF--NG-EWGIPGGFIEGKETYMD-RGRKEFLEEALNASN 214 (362)
Q Consensus 173 LevLlIkR--~g-~WaLPGG~Vd~GEsl~~-aa~REl~EEtGl~~~ 214 (362)
-++|+++| .+ .|.+|||.|++||+..+ ||+||+.||||+...
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 36788888 54 99999999999999988 999999999999765
No 77
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.47 E-value=5.4e-07 Score=76.96 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=86.8
Q ss_pred CCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe---------CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 143 PNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF---------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 143 PNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR---------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
|..+|..++.|.. +| ++.|||+.. .|-|+||.|-++.||+...|++|||.||+|+.+
T Consensus 2 pK~SAGvLlYR~~---aG-----------~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~v 67 (161)
T COG4119 2 PKLSAGVLLYRAR---AG-----------VVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICV 67 (161)
T ss_pred CcccceeEEEEec---CC-----------CEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceee
Confidence 4567777888743 23 356788764 799999999999999999999999999999987
Q ss_pred ccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEe--cCCCcccccCCCCCCcccceEEEecCCC
Q psy13138 214 NMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHD--KKGEHFMALPLSPGDGAEDVKWLIVHSD 291 (362)
Q Consensus 214 ~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~--~~g~~~~~~~l~a~dda~~v~W~~vd~~ 291 (362)
.- + + ..+-.+ +++|-.+...|.-.. .-|-|-+.+..|...- .+| ..+.=.+...+.||++.++
T Consensus 68 dG-P--~----~~lG~~-kQ~GGKvVta~~vea-e~Dva~~rSntFe~eWPprSG------~M~~FPEVDRagWF~l~eA 132 (161)
T COG4119 68 DG-P--R----IDLGSL-KQSGGKVVTAFGVEA-ELDVADARSNTFELEWPPRSG------KMRKFPEVDRAGWFPLAEA 132 (161)
T ss_pred cC-c--h----hhhhhh-ccCCCcEEEEEeeee-eeehhhhhcceeeeecCCCCC------ccccCcccccccceecHHH
Confidence 52 1 1 111111 111222221221000 0111111222222221 122 1111234667899999963
Q ss_pred -CCCCcCHHHHHHHHHHHhcCccccce
Q psy13138 292 -MTFNPTHKTFMKVVTDIHGAHWYAYV 317 (362)
Q Consensus 292 -lpL~asH~~iL~~a~~~~~a~~~~~p 317 (362)
.++...++.+|...++...+-.+..+
T Consensus 133 r~Kil~gQRpfldrL~a~~~ag~s~g~ 159 (161)
T COG4119 133 RTKILKGQRPFLDRLMAHAVAGLSEGP 159 (161)
T ss_pred HhHHhhccchHHHHHHHHhccccccCC
Confidence 45888899999999888877665543
No 78
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.46 E-value=9e-07 Score=80.77 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=30.4
Q ss_pred CeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 182 GEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 182 g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
..|.||||++|+||++++||+||+.||||+...
T Consensus 77 ~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~ 109 (185)
T TIGR00052 77 WLLELSAGMVEKGESPEDVARREAIEEAGYQVK 109 (185)
T ss_pred eEEEECcEecCCCCCHHHHHHHHccccccceec
Confidence 468899999999999999999999999999764
No 79
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.42 E-value=2.2e-06 Score=79.27 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=29.9
Q ss_pred eeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 183 EWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 183 ~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
.|.||+|++|+||++.+||+|||.||||....
T Consensus 83 ~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~ 114 (202)
T PRK10729 83 LLEMVAGMIEEGESVEDVARREAIEEAGLIVG 114 (202)
T ss_pred EEEccceEcCCCCCHHHHHHHHHHHHhCceee
Confidence 59999999999999999999999999999753
No 80
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.40 E-value=3.6e-07 Score=81.36 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|++++ ...|.||||.+++||++.+||+||+.||||....
T Consensus 36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~ 77 (156)
T TIGR02705 36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAIVK 77 (156)
T ss_pred EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCcEee
Confidence 4677777 6679999999999999999999999999998653
No 81
>KOG0648|consensus
Probab=98.35 E-value=5e-07 Score=87.36 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=89.5
Q ss_pred EEEEEEe-------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccC
Q psy13138 174 EFVTVKF-------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDE 246 (362)
Q Consensus 174 evLlIkR-------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDp 246 (362)
|||+++. .|.|.+|+|.|++||++-++++||++||||++... .++ ..+.+. ....|. .
T Consensus 128 eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef-----~eV-la~r~~----H~~~~~-~---- 192 (295)
T KOG0648|consen 128 EVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF-----VEV-LAFRRA----HNATFG-L---- 192 (295)
T ss_pred eeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh-----hhH-HHHHhh----hcchhh-c----
Confidence 6777763 89999999999999999999999999999986542 111 011111 111110 0
Q ss_pred CCCCccEEEEEEEEEEecCCCcccccCCCC-CCcccceEEEecCCCCCCCcCHHH-HHHHHHHHhcCccccceeeeecCC
Q psy13138 247 RNTDNAWVEGAVTTVHDKKGEHFMALPLSP-GDGAEDVKWLIVHSDMTFNPTHKT-FMKVVTDIHGAHWYAYVIGLNSWN 324 (362)
Q Consensus 247 RNTDnAWietva~~~h~~~g~~~~~~~l~a-~dda~~v~W~~vd~~lpL~asH~~-iL~~a~~~~~a~~~~~pigf~~~~ 324 (362)
-++| |-.+|- ++..+ ++++. ..+...+.|+++.+-....-.|.. +.+.+...+-+.....+.||..-.
T Consensus 193 ~ksd---~f~~c~-L~p~s------~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~~~~~~~~~~ 262 (295)
T KOG0648|consen 193 IKSD---MFFTCE-LRPRS------LDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEEFYLGLTAIV 262 (295)
T ss_pred cccc---ceeEEE-eeccc------cccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhhhcCCcccee
Confidence 0122 222221 12211 23333 235667799999953332222332 444555555555566688997788
Q ss_pred cccccccCCCcEEEeccc
Q psy13138 325 LTSATVSNSDWLIVNIRH 342 (362)
Q Consensus 325 l~~~~~~~~~~~~~~~~~ 342 (362)
++..+..++.++|+|..+
T Consensus 263 l~~~~~~k~~~ly~~~~~ 280 (295)
T KOG0648|consen 263 LTTTYTGKESYLYYNEDH 280 (295)
T ss_pred ccccccCcccccccccch
Confidence 999999999999988875
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.14 E-value=1.3e-06 Score=83.98 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.9
Q ss_pred EEEEEe----CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 175 FVTVKF----NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 175 vLlIkR----~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
+||.++ .|.+++-.|||++|||+++|+.||+.||+|+.+.
T Consensus 157 ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~ 200 (279)
T COG2816 157 ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVK 200 (279)
T ss_pred eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEe
Confidence 556555 8999999999999999999999999999999875
No 83
>KOG3084|consensus
Probab=98.08 E-value=3.9e-06 Score=81.55 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=32.8
Q ss_pred CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 181 ~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
.|.|+.+.||+|+||++++|++||..||||++++
T Consensus 212 ~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 212 PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred CchhhhhhccCCccccHHHHHHHHHHHHhCceee
Confidence 8999999999999999999999999999999875
No 84
>KOG3069|consensus
Probab=98.00 E-value=3.8e-05 Score=72.03 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=37.4
Q ss_pred CeeEEEEEEe-------CCeeeCceeecCCCC-CHHHHHHHHHHHHhcccc
Q psy13138 171 PLLEFVTVKF-------NGEWGIPGGFIEGKE-TYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 171 ~vLevLlIkR-------~g~WaLPGG~Vd~GE-sl~~aa~REl~EEtGl~~ 213 (362)
+.|.+|+.|| .|+-+||||++|+.+ +-..||.||-.||.|+..
T Consensus 56 ~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 56 GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 3488999998 899999999999976 455799999999999875
No 85
>PLN02791 Nudix hydrolase homolog
Probab=97.98 E-value=2.6e-05 Score=84.70 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=37.2
Q ss_pred EEEEEEe-------CCeeeC-ceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEWGI-PGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~WaL-PGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++|+.|| .|.|.+ +||+++.||+..+|++||+.||+|+.+.
T Consensus 46 elLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~ 94 (770)
T PLN02791 46 ELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILP 94 (770)
T ss_pred eEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5788888 799999 7999999999999999999999999764
No 86
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=97.98 E-value=3.5e-05 Score=73.54 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=29.9
Q ss_pred EEEEEEe-------CCee-----eCceeecCCCC----------C---HHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF-------NGEW-----GIPGGFIEGKE----------T---YMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR-------~g~W-----aLPGG~Vd~GE----------s---l~~aa~REl~EEtGl~~~ 214 (362)
++|+.|| .|.| +.|++..++|| + ..+||+||+.||+|+...
T Consensus 69 ~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~ 134 (247)
T PLN02552 69 ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE 134 (247)
T ss_pred eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence 5788888 4689 55555544443 1 678999999999999854
No 87
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=97.97 E-value=8.7e-05 Score=68.15 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=26.9
Q ss_pred eeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 184 WGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 184 WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
|.||+|.+|+| ++.+||+|||.||||....
T Consensus 81 lElPAG~vd~~-~p~~aA~REL~EETGy~a~ 110 (191)
T PRK15009 81 IETCAGLLDND-EPEVCIRKEAIEETGYEVG 110 (191)
T ss_pred EEEeccccCCC-CHHHHHHHHHHHhhCCccc
Confidence 88999999976 6999999999999998653
No 88
>KOG3041|consensus
Probab=97.79 E-value=0.00033 Score=64.23 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=35.4
Q ss_pred eEEEEEEe----CCe--eeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 173 LEFVTVKF----NGE--WGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 173 LevLlIkR----~g~--WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
..+|++|. .|. -.||.|++|.||+++.||+|||+||||..-.
T Consensus 88 ~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk 135 (225)
T KOG3041|consen 88 PYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK 135 (225)
T ss_pred EEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence 36777774 555 5789999999999999999999999998743
No 89
>PLN03143 nudix hydrolase; Provisional
Probab=97.74 E-value=7e-05 Score=73.06 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=34.1
Q ss_pred EEEEEEe------CCeeeCceeecCCC-CCHHHHHHHHHHHHhcccc
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGK-ETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~G-Esl~~aa~REl~EEtGl~~ 213 (362)
.+|++++ .-.|+||||++|++ |++.+||+||+.||||+..
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~ 190 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKL 190 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 4667765 45799999999984 8999999999999999974
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.34 E-value=0.0011 Score=54.28 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=32.8
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhc
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEAL 210 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtG 210 (362)
++|+.|| .|.|.||||-++.+|+..+++.|++.+|.+
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 5788888 789999999999999999999999988865
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=94.19 E-value=0.1 Score=43.09 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=45.4
Q ss_pred EEEEEEe------CCeeeCceeecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCC
Q psy13138 174 EFVTVKF------NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDER 247 (362)
Q Consensus 174 evLlIkR------~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpR 247 (362)
++|+.|| .|.|.||.--++...+ .+++.+.+.+..|+.+... +.+ .. ..++|+.+
T Consensus 10 ~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~-----------~~~-~~-v~H~fSH~----- 70 (114)
T PF14815_consen 10 RVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV-----------EPL-GT-VKHVFSHR----- 70 (114)
T ss_dssp EEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE------------S-S-EE-EEEE-SSE-----
T ss_pred EEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh-----------eec-Cc-EEEEccce-----
Confidence 5889998 7999999988874333 5556555555556543321 111 11 34455322
Q ss_pred CCCccEEEEEEEEEEecCCCcccccCCCCCCcccceEEEecCC--CCCCCcCHHHHHH
Q psy13138 248 NTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHS--DMTFNPTHKTFMK 303 (362)
Q Consensus 248 NTDnAWietva~~~h~~~g~~~~~~~l~a~dda~~v~W~~vd~--~lpL~asH~~iL~ 303 (362)
.| ...+|.+...... .. ...+.+|++.++ ++++...|+.|++
T Consensus 71 ----~~-~~~~~~~~~~~~~-----~~----~~~~~~W~~~~~l~~~~~p~~~~kil~ 114 (114)
T PF14815_consen 71 ----RW-TIHVYEVEVSADP-----PA----EPEEGQWVSLEELDQYPLPTPMRKILE 114 (114)
T ss_dssp ----EE-EEEEEEEEEE-SS-------------TTEEEEEGGGGGGS---HHHHHHH-
T ss_pred ----EE-EEEEEEEEecCCC-----CC----CCCCcEEEEHHHHhhCCCCHHHHHHhC
Confidence 23 3444555544331 11 245789999995 3456667776664
No 92
>PLN02839 nudix hydrolase
Probab=93.36 E-value=0.23 Score=50.16 Aligned_cols=33 Identities=21% Similarity=0.028 Sum_probs=29.1
Q ss_pred CCee-eCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 181 NGEW-GIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 181 ~g~W-aLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
.|.| .+-+|.+..||++.++++||..||+|+..
T Consensus 233 PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~ 266 (372)
T PLN02839 233 PGMLDHLVAGGLPHGISCGENLVKECEEEAGISK 266 (372)
T ss_pred CChhhhccccCccCCCCHHHHHHHHHHHHcCCCH
Confidence 5666 56789999999999999999999999964
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=92.11 E-value=0.24 Score=45.02 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.5
Q ss_pred eecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 189 GFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 189 G~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
|+--+||+...|++|-+.+|.|+...
T Consensus 69 sHP~~~es~~~A~~rRl~~ELGie~~ 94 (185)
T COG1443 69 SHPLPGESNEDAARRRLAYELGIEPD 94 (185)
T ss_pred CCCcCCCchHHHHHHHHHHHhCCCCc
Confidence 44458999999999999999999765
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=91.53 E-value=0.38 Score=44.27 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=30.8
Q ss_pred eeEEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhccc
Q psy13138 172 LLEFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNA 212 (362)
Q Consensus 172 vLevLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~ 212 (362)
.-.+||+|. +..|.||||.+.+||+-.+.++|.|.+..+..
T Consensus 57 ~PHvLLLq~~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 57 HPHVLLLQIGNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEEETTTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred CcEEEEEeccCccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 457899998 78999999999999999999999999877654
No 95
>PF14443 DBC1: DBC1
Probab=87.28 E-value=1.8 Score=37.40 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=30.3
Q ss_pred CeeEEEEEEeCCeeeCceeecCC----------CCCHHHHHHHHHHHHhccccc
Q psy13138 171 PLLEFVTVKFNGEWGIPGGFIEG----------KETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 171 ~vLevLlIkR~g~WaLPGG~Vd~----------GEsl~~aa~REl~EEtGl~~~ 214 (362)
+.|+||+.++...-...||.-+| ...+..||+|-+++-||+++.
T Consensus 6 ~~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 6 RLLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred hheeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 46889998882233334444333 235788999999999999874
No 96
>KOG1689|consensus
Probab=84.91 E-value=1.7 Score=39.39 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=35.6
Q ss_pred eEEEEEEe-CCeeeCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 173 LEFVTVKF-NGEWGIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 173 LevLlIkR-~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
-.+|+.|- +.-+.||||..++||+-.+.++|-|.|-.|.+.
T Consensus 84 PHvLLLQig~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~d 125 (221)
T KOG1689|consen 84 PHVLLLQIGNTFFKLPGGRLRPGEDEADGLKRLLTESLGRSD 125 (221)
T ss_pred CeEEEEeeCCEEEecCCCccCCCcchhHHHHHHHHHHhcccc
Confidence 36788887 777899999999999999999999999988543
No 97
>KOG2937|consensus
Probab=82.16 E-value=0.39 Score=47.62 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=35.5
Q ss_pred EEEEEEe--CCeeeCceeecCCCCCHHHHHHHHHHHHhccccc
Q psy13138 174 EFVTVKF--NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASN 214 (362)
Q Consensus 174 evLlIkR--~g~WaLPGG~Vd~GEsl~~aa~REl~EEtGl~~~ 214 (362)
++||++- ...|.+|-|++...|+-..+++||+.||||.+..
T Consensus 96 r~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 96 RCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 4667765 5559999999999999999999999999998764
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=71.32 E-value=21 Score=32.39 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=26.8
Q ss_pred EEEEEEe---------CCeeeC-ceeecCCCC---CHHH----HHHHHHHHHhccc
Q psy13138 174 EFVTVKF---------NGEWGI-PGGFIEGKE---TYMD----RGRKEFLEEALNA 212 (362)
Q Consensus 174 evLlIkR---------~g~WaL-PGG~Vd~GE---sl~~----aa~REl~EEtGl~ 212 (362)
|||+.+| .+..+| -||++..++ +..+ .+.|||.||.+++
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vs 128 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVS 128 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcC
Confidence 6777777 345555 388888766 3333 3579999999875
No 99
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=59.37 E-value=7.2 Score=37.67 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=29.7
Q ss_pred CCCcCHHHHHHHHHHHhcCccccceeeeecCCcccc
Q psy13138 293 TFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSA 328 (362)
Q Consensus 293 pL~asH~~iL~~a~~~~~a~~~~~pigf~~~~l~~~ 328 (362)
++.++|+.||..++.++++++.+.|+.| +|.|.
T Consensus 216 ~M~~DHRRIlATa~aRLR~KIKYRPVVF---ELmp~ 248 (322)
T COG4111 216 PMRHDHRRILATALARLRAKIKYRPVVF---ELMPP 248 (322)
T ss_pred cchhhHHHHHHHHHHHHHhcccccceEE---EecCc
Confidence 4789999999999999999999999998 66664
No 100
>KOG4548|consensus
Probab=50.53 E-value=22 Score=34.23 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEEe----CCeeeCceeec-CCCCCHHHHHHHHHHHHhccc
Q psy13138 175 FVTVKF----NGEWGIPGGFI-EGKETYMDRGRKEFLEEALNA 212 (362)
Q Consensus 175 vLlIkR----~g~WaLPGG~V-d~GEsl~~aa~REl~EEtGl~ 212 (362)
+|+|++ .+.|-||.+-. +.++++-.+|.|+|++-.|..
T Consensus 141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 788886 78999999999 999999999999999877754
No 101
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=33.33 E-value=38 Score=23.54 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=12.5
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhc
Q psy13138 187 PGGFIEGKETYMDRGRKEFLEEAL 210 (362)
Q Consensus 187 PGG~Vd~GEsl~~aa~REl~EEtG 210 (362)
-||..-||--...++.||+-||.-
T Consensus 14 lggLasPgPvp~~~alkELIeELv 37 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEELV 37 (43)
T ss_dssp ---------S-HHHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHHH
Confidence 478888888888999999999864
No 102
>KOG4313|consensus
Probab=27.65 E-value=84 Score=30.48 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=34.9
Q ss_pred EeccCCCCCeeEEEEEEe---CCee-----eCceeecCCCCCHHHHHHHHHHHHhcccc
Q psy13138 163 VTMPSSGKPLLEFVTVKF---NGEW-----GIPGGFIEGKETYMDRGRKEFLEEALNAS 213 (362)
Q Consensus 163 v~~~~~~k~vLevLlIkR---~g~W-----aLPGG~Vd~GEsl~~aa~REl~EEtGl~~ 213 (362)
|.+++.++ |++-+-+| ...| -+-+|-+--|-.+.+|+++|..||+.+..
T Consensus 140 V~~pk~~~--l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 140 VRHPKLGP--LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred ecCCCcCc--eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 34444442 67777777 3344 24567777888999999999999999865
No 103
>PRK10880 adenine DNA glycosylase; Provisional
Probab=25.52 E-value=2.8e+02 Score=28.07 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=15.3
Q ss_pred eEEEecCC--CCCCCcCHHHHHHH
Q psy13138 283 VKWLIVHS--DMTFNPTHKTFMKV 304 (362)
Q Consensus 283 v~W~~vd~--~lpL~asH~~iL~~ 304 (362)
..|+++++ .+++..-++.+++.
T Consensus 320 ~~w~~~~~~~~~~~p~~~~k~l~~ 343 (350)
T PRK10880 320 GLWYNLAQPPSVGLAAPVERLLQQ 343 (350)
T ss_pred CeEechHHhcccCCcHHHHHHHHH
Confidence 46999885 34577777777754
Done!