RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13138
(362 letters)
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 223 bits (570), Expect = 2e-71
Identities = 114/277 (41%), Positives = 160/277 (57%), Gaps = 8/277 (2%)
Query: 41 GEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENVNKYVN-KFN 98
YP S V R ++P EK W + Y P + SV+ P WAD + + KFN
Sbjct: 9 TSPYPGSKVERSQVPNEKVG-WLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFN 67
Query: 99 ELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDH 158
E DG+++R+ YE++ GRP NP+GRTG+ GRGLLGRWGPNH+A I+TRW RD
Sbjct: 68 EKDGHVERKSKN-GLYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDS 124
Query: 159 NGDKVTMPSSGKPLLEFVTVK--FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMT 216
+G+K+ P SGK +L+FV +K GEW IPGG ++ E ++EF EEALN+ T
Sbjct: 125 SGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKT 184
Query: 217 AKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSP 276
+ E + I + L + + +Y+GY+ D RNTDNAW+E HD+ GE L L
Sbjct: 185 SAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEA 244
Query: 277 GDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
GD A VKW+ ++ + +H F+K+V + AHW
Sbjct: 245 GDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 281
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 39.5 bits (91), Expect = 7e-04
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 175 FVTVKFNGEWGIPGGFIE-GKETYMDRGRKEFLEE-ALNASNMTAKESKSILKHLETVMD 232
+ ++F+G G PGGF++ + D +E EE A+ + + H+ +
Sbjct: 68 LMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPR 127
Query: 233 DNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHF--MALPLSP-GDGAEDVKWLIVH 289
HF Y K + VE T D E + +PL DG + + +
Sbjct: 128 VVAHF----YAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLEN 183
Query: 290 S 290
S
Sbjct: 184 S 184
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 38.6 bits (90), Expect = 8e-04
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 28/106 (26%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVY 239
G W +P G +E ET ++ ++E EEA + + + L +V + +V
Sbjct: 44 CRGSWYLPAGRMEPGETIVEALQREVKEEA----GLHCE-----PETLLSVEERGPSWVR 94
Query: 240 RGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKW 285
++ G + T + + W
Sbjct: 95 FVFLAR-------PTGGILKTSKE------------ADAESLQAAW 121
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 37.9 bits (88), Expect = 0.002
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+G W +PGG+ + ++ D KE EEA
Sbjct: 90 DGLWSLPGGWCDVDQSVKDNVVKEVKEEA 118
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 37.4 bits (87), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
W +P G IE ET + +E EE
Sbjct: 42 GEYWSLPAGAIELGETPEEAVVREVWEET 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.003
Identities = 62/392 (15%), Positives = 104/392 (26%), Gaps = 147/392 (37%)
Query: 25 LFNTPYES--GYMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSY--NPE------YF 74
L+ T Y G ++ + R L EK + + + NP Y
Sbjct: 176 LYQT-YHVLVGDLIKFSAETLSELI---RTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 75 VHPSV----IG--QPWADSENVNKYVNKFNELDGYIDRRRCCNVKYELDYNTGRPLNP-- 126
+ + IG Q L Y+ + L + G L
Sbjct: 232 LSIPISCPLIGVIQ-----------------LAHYV---VTAKL---LGFTPGE-LRSYL 267
Query: 127 SGRTGICGRGLLGRWGPNHSAFLI--VTRW--FRDHNGDKV-------------TMPSSG 169
G TG +GL+ +A I W F + K P++
Sbjct: 268 KGATG-HSQGLV-------TAVAIAETDSWESFFV-SVRKAITVLFFIGVRCYEAYPNTS 318
Query: 170 KPLLEFVTVKFNGEWGIPGGFIEGKETYM--DRG-RKEFLEEALNASNMTAKESKSILKH 226
P N E G+P + M +E +++ +N +N K +
Sbjct: 319 LPPSILEDSLENNE-GVP--------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--E 367
Query: 227 LETVMDDNC--HFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVK 284
+ V N + V G + + G T+ K G + +
Sbjct: 368 ISLV---NGAKNLVVSGPPQS--------LYGLNLTLRKAKAP----------SGLDQSR 406
Query: 285 WLIVHSD------MTFNPT----HKTFMK-----VVTDIHGAHWYAYVIGLNSWNLTS-- 327
I S+ F P H + + D+ + S+N
Sbjct: 407 --IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV--------SFNAKDIQ 456
Query: 328 ----ATVSNSDW--LIVNIRHSL-----SQPC 348
T SD L +I + P
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 37.0 bits (86), Expect = 0.004
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
K +G+W +PGG+ + T + KE EE
Sbjct: 87 KSDGKWALPGGWADVGYTPTEVAAKEVFEET 117
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 36.4 bits (84), Expect = 0.005
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 20/108 (18%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDD-NCHFVY 239
G + +PGG E +E EE + + +L + N H VY
Sbjct: 36 GGRYNLPGGKANRGELRSQALIREIREET----GLRINS----MLYLFDHITPFNAHKVY 87
Query: 240 RGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLI 287
+G ++ + ++ P + D + + ++
Sbjct: 88 L-----------CIAQGQPKPQNEIERIALVSSPDTDMDLFVEGRAIL 124
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 36.4 bits (84), Expect = 0.005
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
G W +PGG ++ ET + + E
Sbjct: 42 AQGYWFVPGGRVQKDETLEAAFERLTMAE 70
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 36.0 bits (83), Expect = 0.006
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
K G + PGG +E ET ++ ++EF EE
Sbjct: 20 KRLGVYIYPGGHVEHNETPIEAVKREFEEE 49
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 35.9 bits (83), Expect = 0.006
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEE 208
G W IP G +E E D +E EE
Sbjct: 42 AGLWHIPSGAVEDGENPQDAAVREACEE 69
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 35.5 bits (82), Expect = 0.011
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 26/118 (22%)
Query: 169 GKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMTAKESKSILKHL 227
E G+W +PGGF++ E+ +E EE L L
Sbjct: 54 SLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTD------------IPL 101
Query: 228 ETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKW 285
V+ +D R W+ ++ + GD A ++
Sbjct: 102 IPFG------VFDKPGRDPR----GWI---ISRAFYAIVPPEALEKRAAGDDAAEIGL 146
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 36.1 bits (83), Expect = 0.014
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEE-ALNASNMTAKESKSILKHLETVMDDNCHFV 238
W +PGGF+E ET +E EE +N ++ + V
Sbjct: 231 GKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQ------LAIAKRCEK------V 278
Query: 239 YRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALP-LSPGDGAEDVKWL 286
+ + R ++ V + + +LP ++ D A+DVKW+
Sbjct: 279 FDYPDRSVR----GRT---ISHVGLFVFDQWPSLPEINAADDAKDVKWI 320
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 35.8 bits (82), Expect = 0.015
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFV 238
K + WG P G I+ E+ +D +E EE + + + ++ + +
Sbjct: 123 KASSGWGFPKGKIDKDESDVDCAIREVYEE----TGFDCSSRINPNEFIDMTIRGQNVRL 178
Query: 239 YRGYMKDE 246
Y
Sbjct: 179 YIIPGISL 186
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 34.7 bits (80), Expect = 0.015
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
G WG+PGG ++ E +E EE
Sbjct: 51 PEAGCWGLPGGKVDWLEPVERAVCREIEEEL 81
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 35.3 bits (81), Expect = 0.016
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
W PGG E +E D +E EE
Sbjct: 51 KNMWKFPGGLSEPEEDIGDTAVREVFEET 79
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 35.7 bits (82), Expect = 0.018
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 20/107 (18%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMTAKESKSILKHLETVMDDNCHFV 238
G +PGGFI+ ET ++ +E EE L + + V
Sbjct: 226 GLGLIALPGGFIKQNETLVEGMLRELKEETRLKV------PLPVLRGSIVDSH------V 273
Query: 239 YRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKW 285
+ + R +T + + + GD A+ W
Sbjct: 274 FDAPGRSLR----GRT---ITHAYFIQLPGGELPAVKGGDDAQKAWW 313
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 35.4 bits (81), Expect = 0.020
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
F W +PGGF+ E+ D +E EE
Sbjct: 68 FRNSWALPGGFVNRNESTEDSVLRETKEE 96
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 34.1 bits (79), Expect = 0.021
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 35/111 (31%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMTAKESKSILKHLETVMDDNCHFVY 239
+ W P G IE E + +E EE + IL ++ + Y
Sbjct: 24 SNVWSFPKGNIEPGEKPEETAVREVWEETGVKG---------EILDYIGEI-------HY 67
Query: 240 RGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLS----PGDGAEDVKWL 286
+K ER K ++++ P +D K+
Sbjct: 68 WYTLKGER--------------IFKTVKYYLMKYKEGEPRPSWEVKDAKFF 104
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 35.0 bits (80), Expect = 0.022
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 155 FRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
FR + ++V + + + W +PGG +E +E +E EEA
Sbjct: 48 FRSESEEEVLL---------VSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEA 93
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 34.2 bits (79), Expect = 0.023
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+PGGF+E E + +E EE
Sbjct: 37 VGLALPGGFVEVGERVEEAAAREMREET 64
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 34.3 bits (79), Expect = 0.023
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
N +W +PGG +E ET + +E EE
Sbjct: 45 NRDWSLPGGRVENGETLEEAMIREMREET 73
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 34.0 bits (78), Expect = 0.033
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
W P G +E ET ++ +E EE
Sbjct: 29 ALWNQPAGHLEADETLVEAAARELWEET 56
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 34.2 bits (78), Expect = 0.039
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 9/69 (13%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFV 238
W GG + ++ + KE EE K+ L+ + V
Sbjct: 66 NIYNSWAWTGGHSDNEKDQLKVAIKELKEET---------GVKNPTPLLDKAFALDVLTV 116
Query: 239 YRGYMKDER 247
+ +
Sbjct: 117 NGHIKRGKY 125
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 33.9 bits (78), Expect = 0.045
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
G+W +P GF+E ET + +E LEEA
Sbjct: 65 GKWTLPAGFMENNETLVQGAARETLEEA 92
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 33.6 bits (76), Expect = 0.070
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 166 PSSGKPLLEFVTVKFNGEWGIPGGFIE-GKETYMDRGRKEFLEE 208
P L+ ++F+G G PGGF++ + + ++E EE
Sbjct: 53 PIRRVLLMM---MRFDGRLGFPGGFVDTRDISLEEGLKRELEEE 93
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 32.5 bits (74), Expect = 0.075
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEE 208
+ W P G I E +D +E EE
Sbjct: 27 SDSWSFPRGKISKDENDIDCCIREVKEE 54
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 32.3 bits (73), Expect = 0.11
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
K + GG IE E + +E EEA
Sbjct: 25 KKAKKMLPLGGHIEVNELPEEACIREAKEEA 55
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 32.4 bits (74), Expect = 0.11
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 178 VKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
K G++ GG I+ E+ D +E EE
Sbjct: 35 TKDKGKYYTIGGAIQVNESTEDAVVREVKEEL 66
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 32.1 bits (73), Expect = 0.13
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEE 208
NG + +PGG IEG ET + +E LEE
Sbjct: 40 NGAYFLPGGEIEGTETKEEAIHREVLEE 67
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 32.0 bits (73), Expect = 0.15
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
G W PGG +E E+ ++ ++E+ EE
Sbjct: 23 PRRGWWVAPGGKMEAGESILETVKREYWEET 53
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 31.7 bits (72), Expect = 0.16
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+ P G +E E+ + +E LEE
Sbjct: 33 IKLNQPAGHLEPGESIIQACSREVLEET 60
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 30.7 bits (70), Expect = 0.27
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEE 208
G W P G E E+ + +E EE
Sbjct: 23 MGFWVFPKGHPEPGESLEEAAVREVWEE 50
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA structural genomics consortium, SGC, RNA
degradation, RNA B protein; 1.70A {Homo sapiens}
Length = 214
Score = 31.7 bits (71), Expect = 0.28
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 175 FVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDN 234
+ ++F+G G PGGF++ + ++ G L L +T E+ + HL
Sbjct: 47 LMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLT--EADYLSSHLTEGPHRV 104
Query: 235 -CHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHF--MALPL-SPGDGAEDVKWLIVHS 290
H Y + VE + D E + +PL + D + ++
Sbjct: 105 VAHL----YARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNA 160
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 31.0 bits (70), Expect = 0.29
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
F G+W + GG +E E + R+E EE
Sbjct: 53 FPGQWALSGGGVEPGERIEEALRREIREE 81
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 30.1 bits (68), Expect = 0.54
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
W P G +E E ++ + EE
Sbjct: 38 DGIHHWTPPKGHVEPGEDDLETALRATQEE 67
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 31.0 bits (69), Expect = 0.55
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+W P G +E ET+ +E EE
Sbjct: 49 DDWSWPKGKLEQNETHRHAAVREIGEET 76
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 30.7 bits (69), Expect = 0.77
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 231 MDDNCHFVYRGYMKDERNTDNAW--VEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIV 288
+D + H Y ++ D + G VTT+ HF P A K L +
Sbjct: 64 LDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPK----DAAGTKALAI 119
Query: 289 HSDMTFNPTHKTFMKVVTDIHGAHWYAYVIG 319
K++ H A ++
Sbjct: 120 TL-------SKSYYNARPAGVKVHGGAVILE 143
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 29.1 bits (65), Expect = 1.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
W G E +E + ++E +EE
Sbjct: 30 ADVWQFVAGGGEDEEAISETAKRESIEEL 58
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 29.2 bits (65), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
GEW + GGF++ E+ D ++ E
Sbjct: 40 AMGEWSLMGGFVQKDESVDDAAKRVLAELT 69
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 29.2 bits (66), Expect = 2.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 203 KEFLEEALNASNMTAKES-KSILKHLETVMDDN 234
L++ MT K + +K L MD +
Sbjct: 172 VSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 204
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 28.6 bits (64), Expect = 2.3
Identities = 13/74 (17%), Positives = 17/74 (22%), Gaps = 15/74 (20%)
Query: 183 EWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETV------MDDNCH 236
P G I+ ET +E EE + V + H
Sbjct: 93 CIEFPAGLIDDGETPEAAALRELEEET----GYKGDI----AECSPAVCMDPGLSNCTIH 144
Query: 237 FVY-RGYMKDERNT 249
V D N
Sbjct: 145 IVTVTINGDDAENA 158
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 29.4 bits (65), Expect = 2.3
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 116 LDYNTGRPLNPSGRTG--ICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTM 165
L+ + RP N G + L+G G ++++
Sbjct: 101 LEAESHRPDNAMINAGALAVHQLLVGPEASRKERLDRAVEIMSLLAGRRLSV 152
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 29.1 bits (66), Expect = 2.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 174 EFVTVKFNGEWGIPGGFIEG-------KETYMDRGRKEFLEEA 209
F TV + G W G ++ +E + KE L+EA
Sbjct: 27 AFGTV-YKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 186 IPGGFIEGKETYMDRGRKEFLEEA 209
+ G IE E+ D R+E +EEA
Sbjct: 94 MVAGMIEEGESVEDVARREAIEEA 117
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEE 208
W P G ++ E +E EE
Sbjct: 30 HHWTPPKGHVDPGEDEWQAAIRETKEE 56
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 27.6 bits (62), Expect = 4.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 183 EWGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMT 216
E G G I+ E+ + +E EE A+++T
Sbjct: 76 ELGFSKGLIDPGESVYEAANRELKEEVGFGANDLT 110
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 28.1 bits (63), Expect = 5.5
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 174 EFVTVKFNGEWGIPGGFIEG-------KETYMDRGRKEFLEEA 209
EF V + G G E K Y ++ R +FL EA
Sbjct: 56 EFGEV-YKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA 97
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 27.7 bits (62), Expect = 6.0
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 174 EFVTVKFNGEWGIPGGFIEG-------KETYMDRGRKEFLEEA 209
F TV + G W G ++ +E + KE L+EA
Sbjct: 27 AFGTV-YKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 27.5 bits (62), Expect = 6.6
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 194 KETYMDRGRKEFLEEA 209
K+ +++F+ EA
Sbjct: 49 KKDCTLDNKEKFMSEA 64
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 27.6 bits (62), Expect = 6.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 194 KETYMDRGRKEFLEEA 209
K D R++FL+EA
Sbjct: 52 KNCTSDSVREKFLQEA 67
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 27.7 bits (62), Expect = 6.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 194 KETYMDRGRKEFLEEA 209
K Y ++ R++FL EA
Sbjct: 82 KVGYTEKQRRDFLGEA 97
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 26.7 bits (60), Expect = 7.9
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 184 WGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMT 216
I G +E E +E LEE AS
Sbjct: 34 TEIVAGGVEKGEDLGAAAARELLEEVGGAASEWV 67
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 26.5 bits (59), Expect = 8.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 9/29 (31%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEAL 210
G+W +PGG + E+ L+E +
Sbjct: 36 GKWDLPGGKVNPDES---------LKEGV 55
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 27.5 bits (61), Expect = 8.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 194 KETYMDRGRKEFLEEA 209
K D R++FL+EA
Sbjct: 427 KNCTSDSVREKFLQEA 442
>3uaj_B Envelope protein; dengue antibody membrane fusion, viral
protein-immune system; HET: NAG; 3.23A {Dengue virus 4}
Length = 433
Score = 27.3 bits (60), Expect = 9.4
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 270 MALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVT 306
+ LP + G +V W +TF H V
Sbjct: 216 LPLPWTAGADTSEVHWNYKERMVTFKVPHAKRQDVTV 252
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 9.6
Identities = 35/256 (13%), Positives = 69/256 (26%), Gaps = 84/256 (32%)
Query: 35 MVDRNFGEFYPRSNVTRLK---------L-PKE--KYYVWEFALRSYNPEYFVHPSVIGQ 82
+ + + N +L L P E K + ++ + P + ++
Sbjct: 340 GLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSV--FPPSAHIPTILLSL 394
Query: 83 PWADS--ENVNKYVNKFNEL---------------DGYIDRRRCCNVKYEL------DYN 119
W D +V VNK ++ Y++ + +Y L YN
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 120 TGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVK 179
+ + +F H G + + + F
Sbjct: 455 IPKTFDSDDLIPPYLDQ-----------------YFYSHIGHHLKNIEHPERMTLF---- 493
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVY 239
+ ++D FLE+ + + S SIL L+ + Y
Sbjct: 494 --------------RMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLK------FY 530
Query: 240 RGYMKDERNTDNAWVE 255
+ Y+ D V
Sbjct: 531 KPYICDNDPKYERLVN 546
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 27.2 bits (61), Expect = 9.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 194 KETYMDRGRKEFLEEA 209
+ET + +FL+EA
Sbjct: 148 RETLPPDLKAKFLQEA 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.442
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,761,975
Number of extensions: 342838
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 72
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)