RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13138
(362 letters)
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 213 bits (543), Expect = 9e-68
Identities = 114/274 (41%), Positives = 161/274 (58%), Gaps = 8/274 (2%)
Query: 44 YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENVNKYVN-KFNELD 101
YP S V R ++P EK W + Y P + SV+ P WAD + + KFNE D
Sbjct: 12 YPGSKVERSQVPNEKVG-WLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKD 70
Query: 102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161
G+++R+ + YE++ GRP NP+GRTG+ GRGLLGRWGPNH+A I+TRW RD +G+
Sbjct: 71 GHVERKSKNGL-YEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGN 127
Query: 162 KVTMPSSGKPLLEFVTVK--FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219
K+ P SGK +L+FV +K GEW IPGG ++ E ++EF EEALN+ T+ E
Sbjct: 128 KIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE 187
Query: 220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279
+ I + L + + +Y+GY+ D RNTDNAW+E HD+ GE L L GD
Sbjct: 188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDD 247
Query: 280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
A VKW+ ++ + +H F+K+V + AHW
Sbjct: 248 AGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 281
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 41.2 bits (96), Expect = 5e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRG-RKEFLEEA-LNASNMTAKESKSILKHLETVMDDNCH 236
+F+G G PGGF++ ++ ++ G ++E EE + + E + +
Sbjct: 50 RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVR---EHPQK 106
Query: 237 FVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWL 286
V Y+K+ + + +E D E + + + V L
Sbjct: 107 CVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGL 156
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 36.3 bits (83), Expect = 0.002
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 152 TRWFRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
T ++ + + + + NG + +PGG IEG ET + +E LEE
Sbjct: 11 TLTYQTRYAAYIIVSKPENNTM-VLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEEL 67
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 36.3 bits (83), Expect = 0.002
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFV 238
K + WG P G I+ E+ +D +E EE + + ++ + +
Sbjct: 24 KASSGWGFPKGKIDKDESDVDCAIREVYEET----GFDCSSRINPNEFIDMTIRGQNVRL 79
Query: 239 YRGYMKDE 246
Y
Sbjct: 80 YIIPGISL 87
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 35.6 bits (81), Expect = 0.003
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 169 GKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLE 228
GK LL V K G + PGG +E ET ++ ++EF EE + + +
Sbjct: 12 GKVLL--VKHKRLGVYIYPGGHVEHNETPIEAVKREFEEET----GIVVE----PIGFTY 61
Query: 229 TVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWL 286
++D+N + V H ++ G ++ +W+
Sbjct: 62 GIIDENAVERPMPLVI------LEEVVKYPEETHIHFDLIYLVKR--VGGDLKNGEWI 111
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 34.2 bits (78), Expect = 0.006
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYR 240
G W P G E E+ + +E EE + + + + + V + F+ R
Sbjct: 23 MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLMR 82
Query: 241 GYMK---DERNTDNAWV 254
G +E T W
Sbjct: 83 GEGAPRLEEGMTGAGWF 99
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 34.4 bits (78), Expect = 0.007
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+ P G +E E+ + +E LEE
Sbjct: 25 GTAIKLNQPAGHLEPGESIIQACSREVLEET 55
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 33.1 bits (75), Expect = 0.020
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEA----LNASNMTAKESKSILKHLETVMDDNC 235
G W GG ++ ET D R+E EE+ + + + + + C
Sbjct: 28 GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFC 87
Query: 236 HFVYRGYMKDERNTDNAWVE 255
+G + W +
Sbjct: 88 TDSIQGTPVESDEMRPCWFQ 107
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 32.5 bits (73), Expect = 0.048
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 27/107 (25%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEA-LNASNMTAKESKSILKHLETVMDDNCHFV 238
F W +PGGF+ E+ D +E EE + S ++ S +
Sbjct: 66 FRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVS 125
Query: 239 YRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKW 285
Y ++ +E PL GD A++V W
Sbjct: 126 YLAFIGEE--------------------------PLIAGDDAKEVHW 146
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 30.9 bits (69), Expect = 0.12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+ G W IP G +E E D +E EE
Sbjct: 39 EKAGLWHIPSGAVEDGENPQDAAVREACEET 69
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 30.5 bits (68), Expect = 0.13
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 169 GKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
+ +L + + W +PGG +E +E +E EEA
Sbjct: 24 EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEA 64
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 30.6 bits (68), Expect = 0.16
Identities = 9/59 (15%), Positives = 17/59 (28%)
Query: 181 NGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVY 239
W P G +E E ++ + EEA + + + +Y
Sbjct: 40 IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIY 98
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 29.4 bits (65), Expect = 0.46
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEA 209
G+ PGG ++ ET +E EE
Sbjct: 61 GQIAFPGGSLDAGETPTQAALREAQEEV 88
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 28.2 bits (63), Expect = 0.57
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 194 KETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKD 245
K Y+ RK L A A T SK ++ +F + +KD
Sbjct: 63 KGKYVGELRKALLSGAGPADVYTFNFSK-----------ESAYFFFEKNLKD 103
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 27.5 bits (60), Expect = 1.8
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 9/107 (8%)
Query: 182 GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRG 241
W +P G I+ E + +E EE S E L + + R
Sbjct: 38 DAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTY-------DFPPKVRE 90
Query: 242 YMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAE--DVKWL 286
+ + +D + + L + E + W+
Sbjct: 91 KLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWV 137
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 27.0 bits (59), Expect = 2.6
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 179 KFNGEWGIPGGFIEGKETYMDRGRKEFLEE 208
+ PGG +E E + + +E EE
Sbjct: 33 NRWSGYAFPGGHVENDEAFAESVIREIYEE 62
>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
2 [TaxId: 11060]}
Length = 297
Score = 26.6 bits (59), Expect = 4.9
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 268 HFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVT 306
+ LP PG + W+ + +TF H VV
Sbjct: 214 LDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVV 252
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 25.1 bits (54), Expect = 8.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 169 GKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
LL T NG + GF+E ET +E +EE+
Sbjct: 14 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEES 54
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 25.2 bits (54), Expect = 8.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 180 FNGEWGIPGGFIEGKETYMDRGRKEFLEEA 209
GEW + GGF++ E+ D ++ E
Sbjct: 37 AMGEWSLMGGFVQKDESVDDAAKRVLAELT 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.442
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,464,236
Number of extensions: 70704
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 25
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)