Query psy1314
Match_columns 275
No_of_seqs 291 out of 2678
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:34:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.1E-38 6.7E-43 275.7 25.6 172 11-182 102-278 (346)
2 KOG0148|consensus 100.0 2.3E-32 4.9E-37 220.6 20.8 171 7-183 53-242 (321)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 7.1E-32 1.5E-36 247.2 26.5 164 10-182 52-310 (578)
4 TIGR01645 half-pint poly-U bin 100.0 2E-32 4.4E-37 251.2 20.0 170 14-183 105-288 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-31 6.3E-36 235.4 19.7 167 14-180 1-172 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 7.5E-31 1.6E-35 240.5 21.8 168 13-180 86-267 (457)
7 KOG0117|consensus 100.0 3.9E-30 8.5E-35 220.5 23.0 167 8-182 75-334 (506)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-30 7.5E-35 228.5 20.8 168 14-181 87-351 (352)
9 KOG0144|consensus 100.0 3.2E-31 6.9E-36 226.2 13.1 170 14-184 32-211 (510)
10 TIGR01628 PABP-1234 polyadenyl 100.0 4.1E-29 9E-34 234.3 18.7 161 18-179 2-167 (562)
11 KOG4205|consensus 100.0 8.3E-29 1.8E-33 210.6 18.3 173 13-185 3-182 (311)
12 TIGR01628 PABP-1234 polyadenyl 100.0 5.1E-28 1.1E-32 227.0 18.3 167 13-181 175-366 (562)
13 KOG0145|consensus 100.0 2.9E-28 6.3E-33 196.0 13.3 169 13-181 38-211 (360)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.4E-27 7.4E-32 219.1 19.8 162 12-179 171-375 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-26 3.4E-31 212.4 19.0 155 15-179 1-174 (481)
16 KOG0131|consensus 99.9 2.3E-27 4.9E-32 181.4 10.6 170 11-180 4-178 (203)
17 KOG0127|consensus 99.9 2.1E-26 4.5E-31 202.0 15.8 163 17-180 6-197 (678)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.1E-25 4.5E-30 205.0 18.8 159 14-179 273-480 (481)
19 KOG0109|consensus 99.9 5.2E-26 1.1E-30 185.7 12.1 149 17-182 3-153 (346)
20 KOG0124|consensus 99.9 5E-26 1.1E-30 190.9 11.5 167 16-182 113-293 (544)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.8E-25 1.7E-29 203.4 20.4 166 13-178 292-501 (509)
22 KOG0127|consensus 99.9 8.3E-25 1.8E-29 192.0 16.7 166 15-181 116-380 (678)
23 KOG0145|consensus 99.9 9E-24 2E-28 170.1 14.1 167 14-180 125-359 (360)
24 KOG4211|consensus 99.9 1.5E-22 3.3E-27 176.2 19.8 167 11-180 5-183 (510)
25 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-22 2.9E-27 186.0 20.4 161 15-179 185-448 (457)
26 KOG0123|consensus 99.9 4.3E-23 9.4E-28 181.5 15.1 154 17-183 2-157 (369)
27 KOG0147|consensus 99.9 1.2E-23 2.5E-28 185.4 7.9 175 8-182 171-361 (549)
28 KOG0148|consensus 99.9 7.3E-23 1.6E-27 165.8 10.8 138 12-183 2-146 (321)
29 KOG0110|consensus 99.9 2E-22 4.3E-27 182.2 11.2 164 16-179 515-693 (725)
30 PLN03134 glycine-rich RNA-bind 99.9 1.2E-20 2.6E-25 145.5 14.4 87 96-182 30-117 (144)
31 KOG0146|consensus 99.9 1.2E-21 2.5E-26 158.6 8.8 168 13-181 16-367 (371)
32 KOG0144|consensus 99.9 3.3E-21 7.1E-26 165.2 10.3 167 14-181 122-506 (510)
33 KOG0105|consensus 99.8 4.7E-20 1E-24 141.7 14.9 141 13-163 3-171 (241)
34 KOG0123|consensus 99.8 6.9E-20 1.5E-24 161.3 13.1 157 19-179 79-246 (369)
35 PLN03134 glycine-rich RNA-bind 99.8 2.6E-18 5.6E-23 132.5 11.8 86 10-95 28-114 (144)
36 TIGR01645 half-pint poly-U bin 99.8 2.6E-17 5.7E-22 151.9 19.3 79 14-92 202-281 (612)
37 KOG4212|consensus 99.7 9.8E-17 2.1E-21 138.1 14.7 160 14-175 42-290 (608)
38 KOG4211|consensus 99.7 1E-15 2.2E-20 133.9 18.9 160 14-176 101-355 (510)
39 KOG0149|consensus 99.7 3.1E-17 6.8E-22 131.0 8.5 82 13-94 9-90 (247)
40 TIGR01648 hnRNP-R-Q heterogene 99.7 2.7E-16 5.8E-21 145.0 15.8 75 14-96 231-308 (578)
41 KOG0149|consensus 99.7 4.4E-17 9.5E-22 130.2 6.8 81 98-178 10-90 (247)
42 KOG4206|consensus 99.7 3.4E-15 7.4E-20 119.1 14.7 156 13-176 6-219 (221)
43 KOG0110|consensus 99.6 1.9E-15 4.1E-20 137.3 13.2 164 12-181 381-600 (725)
44 KOG0106|consensus 99.6 3.2E-16 6.9E-21 126.1 6.7 141 17-173 2-165 (216)
45 KOG0122|consensus 99.6 1E-15 2.3E-20 122.8 9.4 86 10-95 183-269 (270)
46 PF00076 RRM_1: RNA recognitio 99.6 1.9E-15 4E-20 102.0 9.1 69 19-88 1-70 (70)
47 TIGR01659 sex-lethal sex-letha 99.6 1.1E-15 2.3E-20 134.1 9.3 82 97-178 104-186 (346)
48 KOG0147|consensus 99.6 2.2E-15 4.9E-20 133.4 10.8 158 17-179 279-528 (549)
49 PF14259 RRM_6: RNA recognitio 99.6 4.9E-15 1.1E-19 100.2 8.4 69 19-88 1-70 (70)
50 COG0724 RNA-binding proteins ( 99.6 3.2E-14 7E-19 121.0 15.0 124 16-139 115-264 (306)
51 KOG0113|consensus 99.6 6.1E-15 1.3E-19 121.6 9.5 92 2-93 87-179 (335)
52 PLN03120 nucleic acid binding 99.6 9E-15 1.9E-19 120.8 10.3 80 15-97 3-82 (260)
53 KOG0122|consensus 99.6 5.3E-15 1.1E-19 118.8 8.5 82 98-179 187-269 (270)
54 PF00076 RRM_1: RNA recognitio 99.6 8.1E-15 1.8E-19 98.9 7.9 69 103-172 1-70 (70)
55 KOG1548|consensus 99.6 1.6E-13 3.5E-18 115.4 16.2 165 10-179 128-352 (382)
56 KOG0125|consensus 99.6 6.8E-15 1.5E-19 122.7 7.6 96 82-179 77-174 (376)
57 KOG0121|consensus 99.6 6.4E-15 1.4E-19 106.9 6.4 83 99-181 35-118 (153)
58 KOG0125|consensus 99.6 1.5E-14 3.3E-19 120.7 8.9 96 5-102 85-181 (376)
59 KOG0121|consensus 99.6 9.7E-15 2.1E-19 106.0 6.8 82 12-93 32-114 (153)
60 PF14259 RRM_6: RNA recognitio 99.6 2.9E-14 6.3E-19 96.4 8.6 69 103-172 1-70 (70)
61 KOG1457|consensus 99.5 1.1E-13 2.4E-18 109.8 12.1 149 10-162 28-268 (284)
62 KOG1365|consensus 99.5 1.3E-14 2.9E-19 123.2 7.3 163 15-179 160-362 (508)
63 KOG0107|consensus 99.5 4.1E-14 8.9E-19 108.3 9.2 78 99-181 9-87 (195)
64 PLN03121 nucleic acid binding 99.5 5.7E-14 1.2E-18 114.2 10.0 79 15-96 4-82 (243)
65 KOG4207|consensus 99.5 3.5E-14 7.5E-19 111.4 8.1 83 99-181 12-95 (256)
66 PLN03120 nucleic acid binding 99.5 7.5E-14 1.6E-18 115.3 9.9 77 100-179 4-80 (260)
67 KOG0105|consensus 99.5 1.6E-13 3.5E-18 105.9 9.4 79 98-179 4-83 (241)
68 KOG0129|consensus 99.5 8.9E-13 1.9E-17 116.4 14.7 165 12-177 255-452 (520)
69 KOG0130|consensus 99.5 1E-13 2.2E-18 101.6 7.1 84 100-183 72-156 (170)
70 KOG0113|consensus 99.5 2.4E-13 5.2E-18 112.2 9.6 82 98-179 99-181 (335)
71 KOG0107|consensus 99.5 1.2E-13 2.5E-18 105.8 6.9 77 14-95 8-85 (195)
72 KOG4212|consensus 99.5 1.4E-12 3.1E-17 112.8 13.3 70 101-175 537-607 (608)
73 smart00362 RRM_2 RNA recogniti 99.5 8E-13 1.7E-17 88.8 9.5 70 18-89 1-71 (72)
74 KOG4207|consensus 99.4 2E-13 4.3E-18 107.2 7.0 84 10-93 7-91 (256)
75 KOG0124|consensus 99.4 2.6E-12 5.6E-17 108.9 14.1 77 13-89 207-284 (544)
76 KOG0111|consensus 99.4 1.2E-13 2.6E-18 109.3 5.4 85 98-182 8-93 (298)
77 KOG0120|consensus 99.4 1.2E-12 2.7E-17 117.4 12.3 167 11-177 284-490 (500)
78 KOG1190|consensus 99.4 6.7E-12 1.4E-16 107.8 15.3 154 16-178 297-490 (492)
79 PLN03121 nucleic acid binding 99.4 1.5E-12 3.2E-17 106.1 10.0 77 100-179 5-81 (243)
80 KOG0126|consensus 99.4 3.4E-14 7.3E-19 109.3 0.3 82 14-95 33-115 (219)
81 smart00360 RRM RNA recognition 99.4 1.6E-12 3.5E-17 86.9 8.6 69 21-89 1-70 (71)
82 KOG0117|consensus 99.4 1.7E-12 3.8E-17 112.5 10.7 82 98-179 81-164 (506)
83 smart00362 RRM_2 RNA recogniti 99.4 2.4E-12 5.1E-17 86.5 8.7 70 102-173 1-71 (72)
84 KOG1190|consensus 99.4 9.6E-13 2.1E-17 112.9 8.2 154 10-173 22-220 (492)
85 KOG0126|consensus 99.4 1E-13 2.2E-18 106.7 1.8 80 100-179 35-115 (219)
86 KOG0130|consensus 99.4 1.2E-12 2.5E-17 96.1 7.1 85 13-97 69-154 (170)
87 smart00360 RRM RNA recognition 99.4 2.3E-12 5E-17 86.2 8.0 69 105-173 1-70 (71)
88 PLN03213 repressor of silencin 99.4 1.2E-12 2.6E-17 114.9 8.0 77 99-179 9-88 (759)
89 KOG0131|consensus 99.4 4.5E-13 9.9E-18 103.2 4.8 82 98-179 7-89 (203)
90 KOG0120|consensus 99.4 9.9E-13 2.1E-17 118.0 7.7 161 13-179 172-369 (500)
91 KOG0114|consensus 99.4 3.2E-12 7E-17 89.5 8.5 87 5-94 7-94 (124)
92 PLN03213 repressor of silencin 99.4 2.2E-12 4.8E-17 113.2 9.2 79 12-94 6-87 (759)
93 KOG1456|consensus 99.4 2.1E-10 4.6E-15 97.7 20.3 163 6-179 21-199 (494)
94 KOG0114|consensus 99.4 3.9E-12 8.6E-17 89.1 7.7 78 99-179 17-95 (124)
95 KOG0108|consensus 99.3 2.8E-12 6E-17 114.4 8.7 80 17-96 19-99 (435)
96 cd00590 RRM RRM (RNA recogniti 99.3 1.1E-11 2.3E-16 83.7 9.3 72 18-90 1-73 (74)
97 KOG0116|consensus 99.3 1.2E-11 2.5E-16 109.8 11.2 81 101-181 289-369 (419)
98 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.8E-16 82.1 9.0 72 102-174 1-73 (74)
99 KOG0415|consensus 99.3 6E-12 1.3E-16 106.2 6.5 84 11-94 234-318 (479)
100 KOG4210|consensus 99.3 9.6E-12 2.1E-16 106.1 7.9 170 15-184 87-269 (285)
101 KOG0111|consensus 99.3 4.6E-12 1E-16 100.4 5.3 85 13-97 7-92 (298)
102 COG0724 RNA-binding proteins ( 99.3 1.9E-11 4.1E-16 103.9 9.0 79 100-178 115-194 (306)
103 KOG0108|consensus 99.3 1.1E-11 2.4E-16 110.5 7.3 82 101-182 19-101 (435)
104 KOG0128|consensus 99.2 3.7E-13 7.9E-18 124.9 -3.0 149 14-178 665-814 (881)
105 KOG4205|consensus 99.2 1.4E-11 3E-16 105.5 6.6 114 15-128 96-215 (311)
106 KOG0415|consensus 99.2 2E-11 4.3E-16 103.2 6.5 83 97-179 236-319 (479)
107 smart00361 RRM_1 RNA recogniti 99.2 5.7E-11 1.2E-15 80.1 7.3 60 114-173 2-69 (70)
108 KOG0132|consensus 99.2 4.5E-11 9.7E-16 110.1 7.0 101 16-122 421-528 (894)
109 smart00361 RRM_1 RNA recogniti 99.2 1.5E-10 3.2E-15 78.1 7.8 60 30-89 2-69 (70)
110 KOG0109|consensus 99.1 6E-11 1.3E-15 97.9 5.7 71 101-179 3-74 (346)
111 PF13893 RRM_5: RNA recognitio 99.1 2.1E-10 4.6E-15 73.8 7.1 55 117-176 1-56 (56)
112 KOG4454|consensus 99.1 2.5E-11 5.5E-16 96.2 1.7 136 11-161 4-144 (267)
113 KOG1365|consensus 99.1 1.6E-10 3.4E-15 98.7 6.2 163 14-177 58-241 (508)
114 KOG0153|consensus 99.1 3.7E-10 8E-15 95.4 7.5 78 95-178 223-302 (377)
115 PF13893 RRM_5: RNA recognitio 99.1 7.8E-10 1.7E-14 71.1 7.2 55 33-92 1-56 (56)
116 KOG0226|consensus 99.1 1.2E-10 2.6E-15 94.4 3.6 166 14-180 94-271 (290)
117 KOG0153|consensus 99.0 8.8E-10 1.9E-14 93.2 8.9 81 8-94 220-302 (377)
118 KOG0112|consensus 99.0 3.3E-10 7.1E-15 106.0 3.9 161 11-179 367-531 (975)
119 KOG0132|consensus 98.9 1.4E-09 3.1E-14 100.4 6.8 73 101-179 422-495 (894)
120 KOG4208|consensus 98.9 3.3E-09 7.2E-14 83.8 7.5 85 8-92 41-127 (214)
121 KOG0146|consensus 98.9 1.7E-09 3.6E-14 88.5 5.9 86 11-96 280-366 (371)
122 KOG4661|consensus 98.9 5.8E-09 1.3E-13 93.4 7.1 81 101-181 406-487 (940)
123 KOG4208|consensus 98.8 8.3E-09 1.8E-13 81.5 6.8 82 98-179 47-130 (214)
124 KOG0116|consensus 98.8 1.1E-08 2.5E-13 91.0 7.5 79 14-92 286-364 (419)
125 KOG1456|consensus 98.8 1.4E-07 3.1E-12 80.7 13.6 150 12-168 283-474 (494)
126 KOG4661|consensus 98.8 1.7E-08 3.7E-13 90.5 7.6 81 14-94 403-484 (940)
127 KOG4307|consensus 98.7 2.2E-08 4.7E-13 91.7 6.8 162 14-177 309-512 (944)
128 KOG0533|consensus 98.7 5.3E-08 1.1E-12 80.5 7.5 83 98-181 81-164 (243)
129 KOG2193|consensus 98.7 2.3E-09 4.9E-14 92.8 -1.5 154 17-181 2-159 (584)
130 KOG4209|consensus 98.7 1.2E-07 2.6E-12 78.5 8.7 83 98-180 99-181 (231)
131 KOG4676|consensus 98.7 2.1E-08 4.5E-13 86.2 4.2 146 16-165 7-212 (479)
132 KOG4206|consensus 98.6 8.1E-08 1.7E-12 77.2 6.9 81 99-182 8-93 (221)
133 KOG4209|consensus 98.6 3.6E-08 7.8E-13 81.6 5.1 84 11-94 96-179 (231)
134 PF04059 RRM_2: RNA recognitio 98.6 2.4E-07 5.2E-12 65.8 7.9 61 17-77 2-64 (97)
135 KOG0226|consensus 98.6 6E-08 1.3E-12 79.0 5.3 85 11-95 185-270 (290)
136 KOG0533|consensus 98.6 2.4E-07 5.3E-12 76.6 8.0 81 13-94 80-161 (243)
137 KOG4307|consensus 98.6 2.4E-07 5.1E-12 85.1 8.1 74 102-175 869-943 (944)
138 KOG4660|consensus 98.5 1.1E-07 2.3E-12 85.4 5.7 149 10-170 69-241 (549)
139 KOG0106|consensus 98.5 1E-07 2.2E-12 77.2 4.9 72 101-180 2-74 (216)
140 KOG1995|consensus 98.5 5.8E-07 1.2E-11 76.9 7.8 86 97-182 63-157 (351)
141 PF04059 RRM_2: RNA recognitio 98.3 2.4E-06 5.2E-11 60.7 7.4 77 101-177 2-85 (97)
142 KOG4454|consensus 98.3 2.5E-07 5.4E-12 73.9 2.4 77 98-176 7-84 (267)
143 KOG1457|consensus 98.3 4.7E-06 1E-10 66.9 9.2 85 100-184 34-123 (284)
144 KOG0128|consensus 98.3 6.3E-08 1.4E-12 90.7 -1.8 153 16-168 571-735 (881)
145 KOG1548|consensus 98.3 1.7E-06 3.7E-11 73.5 6.8 80 99-179 133-221 (382)
146 PF08777 RRM_3: RNA binding mo 98.2 1E-06 2.2E-11 64.0 3.4 71 101-177 2-78 (105)
147 KOG1995|consensus 98.2 2.4E-06 5.3E-11 73.1 6.0 88 9-96 59-155 (351)
148 KOG4660|consensus 98.2 7.5E-07 1.6E-11 80.1 2.4 71 97-172 72-143 (549)
149 KOG0151|consensus 98.1 4E-06 8.6E-11 77.4 5.7 83 99-181 173-259 (877)
150 PF11608 Limkain-b1: Limkain b 98.0 8.9E-06 1.9E-10 55.3 4.4 68 101-178 3-76 (90)
151 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.1E-05 4.5E-10 49.6 5.2 52 17-75 2-53 (53)
152 KOG0151|consensus 98.0 2.9E-05 6.3E-10 71.9 8.1 81 13-93 171-255 (877)
153 KOG4849|consensus 98.0 2E-05 4.3E-10 67.3 6.3 76 99-174 79-157 (498)
154 KOG4210|consensus 97.9 1E-05 2.3E-10 69.3 4.1 86 11-96 179-265 (285)
155 KOG0129|consensus 97.9 4E-05 8.7E-10 68.7 7.5 67 11-77 365-432 (520)
156 PF08777 RRM_3: RNA binding mo 97.9 3.8E-05 8.2E-10 55.8 5.8 55 17-77 2-56 (105)
157 KOG4849|consensus 97.8 1.8E-05 3.8E-10 67.6 4.2 76 13-88 77-155 (498)
158 PF11608 Limkain-b1: Limkain b 97.7 0.00015 3.2E-09 49.4 6.6 68 17-94 3-76 (90)
159 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00013 2.8E-09 46.0 4.8 52 101-159 2-53 (53)
160 KOG0921|consensus 97.6 0.00033 7.2E-09 67.1 9.4 6 264-269 1274-1279(1282)
161 KOG1855|consensus 97.6 7.1E-05 1.5E-09 65.6 4.0 67 97-163 228-307 (484)
162 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00042 9.1E-09 49.6 6.8 78 14-92 4-89 (100)
163 PF08675 RNA_bind: RNA binding 97.5 0.00055 1.2E-08 46.6 6.8 54 15-77 8-61 (87)
164 KOG1855|consensus 97.3 0.00042 9.1E-09 60.9 5.0 67 13-79 228-307 (484)
165 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0034 7.3E-08 45.0 7.5 76 100-176 6-89 (100)
166 KOG2314|consensus 97.1 0.0013 2.8E-08 59.9 6.5 64 14-78 56-125 (698)
167 COG5175 MOT2 Transcriptional r 97.0 0.0016 3.6E-08 55.6 6.3 79 15-93 113-201 (480)
168 PF10309 DUF2414: Protein of u 97.0 0.0038 8.3E-08 40.4 6.3 55 100-162 5-62 (62)
169 KOG2314|consensus 96.9 0.0025 5.5E-08 58.0 6.9 75 99-174 57-139 (698)
170 COG5175 MOT2 Transcriptional r 96.9 0.0032 6.8E-08 53.9 7.0 79 101-179 115-203 (480)
171 KOG4676|consensus 96.8 0.0017 3.8E-08 56.5 4.7 79 101-179 8-89 (479)
172 PF08952 DUF1866: Domain of un 96.8 0.0053 1.1E-07 46.7 6.5 73 14-94 25-106 (146)
173 KOG0115|consensus 96.7 0.0019 4.2E-08 53.2 4.1 95 78-179 15-114 (275)
174 PF10309 DUF2414: Protein of u 96.7 0.016 3.4E-07 37.5 7.3 54 16-77 5-61 (62)
175 PF08952 DUF1866: Domain of un 96.6 0.013 2.8E-07 44.6 7.3 56 116-179 52-107 (146)
176 KOG2202|consensus 96.5 0.001 2.2E-08 54.9 1.0 61 31-92 83-145 (260)
177 KOG3152|consensus 96.5 0.0022 4.8E-08 52.8 2.8 72 15-86 73-157 (278)
178 KOG2135|consensus 96.3 0.0026 5.5E-08 56.8 2.5 78 13-96 369-447 (526)
179 PF07292 NID: Nmi/IFP 35 domai 96.3 0.0089 1.9E-07 41.6 4.5 62 61-122 1-74 (88)
180 KOG0115|consensus 96.1 0.0063 1.4E-07 50.3 3.7 61 17-78 32-92 (275)
181 PF15023 DUF4523: Protein of u 96.1 0.033 7.1E-07 42.1 7.1 74 13-93 83-160 (166)
182 PF08675 RNA_bind: RNA binding 96.1 0.042 9.2E-07 37.6 6.9 54 100-162 9-62 (87)
183 KOG2591|consensus 96.0 0.022 4.7E-07 52.0 6.6 68 99-173 174-246 (684)
184 PF07576 BRAP2: BRCA1-associat 95.8 0.1 2.2E-06 38.1 8.5 60 16-77 13-73 (110)
185 KOG1996|consensus 95.7 0.032 6.9E-07 47.1 6.1 63 114-176 300-364 (378)
186 KOG3152|consensus 95.5 0.0047 1E-07 51.0 0.7 72 99-170 73-157 (278)
187 PF15023 DUF4523: Protein of u 95.5 0.083 1.8E-06 40.0 7.2 74 97-177 83-160 (166)
188 KOG2202|consensus 95.3 0.0056 1.2E-07 50.6 0.6 64 115-179 83-148 (260)
189 KOG1996|consensus 95.2 0.07 1.5E-06 45.1 6.7 62 30-91 300-363 (378)
190 KOG2591|consensus 95.2 0.055 1.2E-06 49.6 6.2 71 13-90 172-247 (684)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.042 9.2E-07 43.8 4.4 70 13-82 4-80 (176)
192 KOG2193|consensus 94.8 0.016 3.5E-07 51.2 1.9 75 101-181 2-78 (584)
193 KOG2416|consensus 94.4 0.024 5.2E-07 52.2 2.2 62 10-77 438-500 (718)
194 KOG0112|consensus 94.4 0.075 1.6E-06 51.4 5.4 76 12-93 451-529 (975)
195 KOG0804|consensus 94.3 0.17 3.8E-06 45.3 7.1 67 15-83 73-141 (493)
196 KOG2135|consensus 94.2 0.034 7.3E-07 49.9 2.6 74 101-180 373-447 (526)
197 PF14111 DUF4283: Domain of un 93.9 0.099 2.2E-06 40.3 4.5 112 19-135 18-140 (153)
198 KOG2416|consensus 93.9 0.053 1.1E-06 50.1 3.2 75 97-177 441-520 (718)
199 KOG4285|consensus 93.9 0.32 7E-06 41.4 7.6 68 17-91 198-266 (350)
200 PF10567 Nab6_mRNP_bdg: RNA-re 93.9 1.2 2.7E-05 37.9 11.0 149 13-162 12-211 (309)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 93.1 0.19 4.1E-06 40.1 4.9 64 99-162 6-75 (176)
202 PRK11634 ATP-dependent RNA hel 92.3 2.1 4.5E-05 41.3 11.5 62 109-179 496-563 (629)
203 PF04847 Calcipressin: Calcipr 90.5 1 2.2E-05 36.1 6.4 61 113-179 8-71 (184)
204 PF07576 BRAP2: BRCA1-associat 90.2 2.5 5.3E-05 30.9 7.6 59 103-163 16-75 (110)
205 KOG4285|consensus 90.1 1.3 2.8E-05 37.9 6.8 72 103-181 200-272 (350)
206 KOG2068|consensus 89.9 0.2 4.3E-06 43.3 1.9 80 14-93 75-161 (327)
207 KOG2068|consensus 89.6 0.1 2.2E-06 45.0 -0.0 79 101-179 78-163 (327)
208 PF03880 DbpA: DbpA RNA bindin 88.5 2.7 5.8E-05 28.2 6.4 58 26-92 11-74 (74)
209 PF04847 Calcipressin: Calcipr 87.9 2.3 4.9E-05 34.2 6.6 60 28-93 7-69 (184)
210 KOG4410|consensus 87.9 2.9 6.3E-05 35.5 7.3 61 11-77 325-393 (396)
211 KOG4574|consensus 87.7 0.31 6.8E-06 47.0 1.8 76 102-183 300-378 (1007)
212 KOG4483|consensus 87.5 1.9 4.1E-05 38.3 6.3 66 13-85 388-454 (528)
213 KOG2253|consensus 86.5 0.37 8.1E-06 45.2 1.6 70 97-175 37-107 (668)
214 KOG2253|consensus 86.1 0.64 1.4E-05 43.7 2.9 69 11-88 35-104 (668)
215 KOG4574|consensus 84.5 0.38 8.2E-06 46.5 0.7 55 18-78 300-354 (1007)
216 KOG2318|consensus 83.9 3.3 7.2E-05 38.6 6.3 119 13-168 171-295 (650)
217 KOG4213|consensus 83.8 0.86 1.9E-05 35.9 2.3 67 16-86 111-178 (205)
218 PF03880 DbpA: DbpA RNA bindin 81.3 4.6 0.0001 27.0 4.9 59 109-176 10-74 (74)
219 KOG0804|consensus 79.7 5.4 0.00012 36.1 5.9 62 100-163 74-136 (493)
220 KOG3875|consensus 79.7 5.7 0.00012 34.3 5.8 6 268-273 92-97 (362)
221 PF07530 PRE_C2HC: Associated 77.4 4.3 9.3E-05 26.8 3.6 63 31-95 2-65 (68)
222 PF10567 Nab6_mRNP_bdg: RNA-re 75.5 8 0.00017 33.1 5.5 80 100-179 15-108 (309)
223 KOG2891|consensus 75.5 5.9 0.00013 33.6 4.7 35 100-134 149-195 (445)
224 KOG4410|consensus 74.5 6.8 0.00015 33.3 4.9 47 101-152 331-377 (396)
225 PF07530 PRE_C2HC: Associated 74.0 5.5 0.00012 26.3 3.5 63 115-179 2-65 (68)
226 PRK14548 50S ribosomal protein 73.8 18 0.00038 25.0 6.0 56 19-77 23-80 (84)
227 smart00596 PRE_C2HC PRE_C2HC d 73.7 4.5 9.7E-05 26.7 2.9 63 31-95 2-65 (69)
228 KOG4483|consensus 71.5 7.6 0.00016 34.7 4.7 60 99-165 390-450 (528)
229 KOG4213|consensus 70.2 8.7 0.00019 30.4 4.3 57 101-162 112-170 (205)
230 PF11767 SET_assoc: Histone ly 68.5 30 0.00066 22.6 6.8 52 27-87 11-63 (66)
231 PF11767 SET_assoc: Histone ly 67.5 32 0.00068 22.6 5.9 52 111-171 11-63 (66)
232 TIGR03636 L23_arch archaeal ri 67.5 33 0.00071 23.2 6.2 56 18-76 15-72 (77)
233 smart00596 PRE_C2HC PRE_C2HC d 66.9 6.8 0.00015 25.9 2.6 62 115-179 2-65 (69)
234 PF03468 XS: XS domain; Inter 66.9 8.9 0.00019 28.3 3.6 57 18-77 10-76 (116)
235 COG5193 LHP1 La protein, small 65.7 2.8 6E-05 37.3 0.9 65 13-77 171-245 (438)
236 KOG3424|consensus 65.0 26 0.00056 25.8 5.5 48 26-74 33-85 (132)
237 PF15513 DUF4651: Domain of un 60.7 23 0.00051 22.8 4.2 21 30-50 8-28 (62)
238 PF07292 NID: Nmi/IFP 35 domai 60.1 22 0.00047 24.8 4.3 31 145-175 1-33 (88)
239 KOG4008|consensus 58.9 9.6 0.00021 31.6 2.7 38 11-48 35-72 (261)
240 PF03468 XS: XS domain; Inter 58.4 13 0.00028 27.4 3.2 36 113-151 30-65 (116)
241 PF02714 DUF221: Domain of unk 57.7 13 0.00029 32.4 3.8 55 61-121 1-55 (325)
242 PRK01178 rps24e 30S ribosomal 56.2 36 0.00078 24.3 5.0 48 26-74 29-81 (99)
243 PF14893 PNMA: PNMA 53.4 14 0.0003 32.6 3.1 26 14-39 16-41 (331)
244 KOG3262|consensus 52.9 43 0.00094 26.7 5.3 30 97-132 77-106 (215)
245 KOG4019|consensus 51.5 12 0.00026 29.7 2.1 73 101-179 11-90 (193)
246 PF10915 DUF2709: Protein of u 49.0 31 0.00068 27.6 4.1 73 43-125 37-117 (238)
247 COG5638 Uncharacterized conser 45.2 2.2E+02 0.0048 25.9 9.1 41 11-51 141-186 (622)
248 PF11411 DNA_ligase_IV: DNA li 44.0 18 0.0004 20.5 1.5 16 26-41 19-34 (36)
249 PTZ00071 40S ribosomal protein 42.6 68 0.0015 24.2 4.9 48 26-74 34-87 (132)
250 PF03439 Spt5-NGN: Early trans 41.6 57 0.0012 22.3 4.1 34 42-80 33-66 (84)
251 KOG2854|consensus 41.3 2.2E+02 0.0048 25.2 8.4 41 15-55 80-120 (343)
252 KOG4019|consensus 41.3 16 0.00035 29.1 1.4 66 14-85 8-79 (193)
253 KOG1175|consensus 41.2 40 0.00087 32.5 4.3 90 27-124 507-599 (626)
254 PF14026 DUF4242: Protein of u 40.5 1.1E+02 0.0024 20.5 6.8 58 103-162 3-67 (77)
255 KOG0156|consensus 40.1 47 0.001 31.1 4.5 65 14-87 30-97 (489)
256 TIGR02542 B_forsyth_147 Bacter 39.1 67 0.0015 23.6 4.2 105 24-152 11-129 (145)
257 COG5193 LHP1 La protein, small 37.8 13 0.00028 33.3 0.5 61 100-160 174-244 (438)
258 PTZ00191 60S ribosomal protein 37.6 1.6E+02 0.0034 22.7 6.2 54 19-75 84-139 (145)
259 KOG2891|consensus 37.3 37 0.00079 28.9 3.0 36 14-49 147-194 (445)
260 COG2004 RPS24A Ribosomal prote 36.6 1.2E+02 0.0027 21.9 5.2 48 25-73 29-81 (107)
261 PF14893 PNMA: PNMA 35.6 27 0.0006 30.8 2.2 53 98-152 16-72 (331)
262 PF01282 Ribosomal_S24e: Ribos 35.6 1.5E+02 0.0032 20.4 5.9 48 26-74 11-63 (84)
263 KOG1295|consensus 35.0 68 0.0015 28.7 4.4 65 13-77 4-71 (376)
264 PF02714 DUF221: Domain of unk 34.1 37 0.0008 29.6 2.8 34 145-179 1-34 (325)
265 PRK11901 hypothetical protein; 34.1 47 0.001 29.1 3.3 53 112-166 254-308 (327)
266 PF00403 HMA: Heavy-metal-asso 33.6 1.2E+02 0.0026 18.8 6.8 55 18-78 1-59 (62)
267 KOG2295|consensus 32.8 14 0.0003 34.5 -0.1 55 14-68 229-283 (648)
268 KOG3194|consensus 32.5 2.5E+02 0.0054 23.8 7.0 53 30-87 157-222 (279)
269 cd00874 RNA_Cyclase_Class_II R 32.1 2.5E+02 0.0054 24.8 7.6 110 23-149 119-237 (326)
270 CHL00030 rpl23 ribosomal prote 31.1 1.9E+02 0.004 20.4 5.4 34 18-51 20-55 (93)
271 PRK10629 EnvZ/OmpR regulon mod 30.6 2.3E+02 0.005 21.2 6.6 60 15-82 34-97 (127)
272 KOG2044|consensus 29.5 3.3E+02 0.0072 27.2 8.2 19 58-76 631-649 (931)
273 CHL00123 rps6 ribosomal protei 29.3 2.1E+02 0.0045 20.2 5.5 53 24-76 14-80 (97)
274 PRK05738 rplW 50S ribosomal pr 29.0 2E+02 0.0044 20.0 5.6 34 18-51 21-56 (92)
275 PF08206 OB_RNB: Ribonuclease 28.1 12 0.00025 23.7 -1.0 37 141-177 7-44 (58)
276 TIGR02058 lin0512_fam conserve 28.0 1.9E+02 0.0041 21.3 5.0 23 110-134 63-85 (116)
277 PRK08559 nusG transcription an 27.1 2.7E+02 0.0058 21.4 6.2 31 43-78 36-66 (153)
278 PRK10590 ATP-dependent RNA hel 26.7 4.9E+02 0.011 23.9 9.0 6 142-147 342-347 (456)
279 PF07876 Dabb: Stress responsi 26.0 2.2E+02 0.0047 19.4 6.1 57 19-75 4-71 (97)
280 PRK09631 DNA topoisomerase IV 25.9 3.3E+02 0.0071 26.5 7.7 57 16-76 220-280 (635)
281 KOG4365|consensus 25.3 13 0.00028 33.7 -1.6 75 102-177 5-80 (572)
282 PRK09630 DNA topoisomerase IV 25.0 4.5E+02 0.0098 24.5 8.0 59 16-77 220-281 (479)
283 cd04908 ACT_Bt0572_1 N-termina 24.8 1.9E+02 0.0041 18.2 7.2 47 29-79 14-61 (66)
284 KOG4008|consensus 24.8 52 0.0011 27.4 1.8 33 99-131 39-71 (261)
285 PRK11901 hypothetical protein; 24.5 2E+02 0.0043 25.3 5.4 67 13-83 242-309 (327)
286 PF04026 SpoVG: SpoVG; InterP 24.3 1.6E+02 0.0035 20.2 4.0 26 126-151 2-27 (84)
287 KOG3432|consensus 24.2 71 0.0015 23.1 2.2 23 26-48 43-65 (121)
288 PHA01632 hypothetical protein 24.1 90 0.0019 19.6 2.4 22 19-40 19-40 (64)
289 cd06405 PB1_Mekk2_3 The PB1 do 23.8 2.4E+02 0.0051 19.0 6.5 54 20-81 12-66 (79)
290 PRK10905 cell division protein 23.6 95 0.0021 27.2 3.3 53 112-166 256-310 (328)
291 CHL00100 ilvH acetohydroxyacid 23.6 1.7E+02 0.0037 23.2 4.6 91 30-130 57-147 (174)
292 KOG4365|consensus 23.2 17 0.00037 32.9 -1.2 59 17-76 4-62 (572)
293 cd00187 TOP4c DNA Topoisomeras 23.1 2.7E+02 0.0058 25.8 6.3 58 16-75 225-286 (445)
294 COG5470 Uncharacterized conser 23.0 2.1E+02 0.0045 20.3 4.3 19 58-76 53-71 (96)
295 PF00276 Ribosomal_L23: Riboso 22.5 1.3E+02 0.0029 20.9 3.4 51 19-69 22-84 (91)
296 PRK12280 rplW 50S ribosomal pr 22.3 3.1E+02 0.0068 21.4 5.6 34 18-51 23-58 (158)
297 PF14111 DUF4283: Domain of un 22.2 44 0.00095 25.3 1.0 37 142-178 55-91 (153)
298 PF05189 RTC_insert: RNA 3'-te 22.2 1.9E+02 0.0041 20.4 4.3 49 18-66 12-65 (103)
299 PF14714 KH_dom-like: KH-domai 22.1 2.1E+02 0.0045 19.4 4.2 56 71-126 11-73 (80)
300 PRK08279 long-chain-acyl-CoA s 22.1 6.8E+02 0.015 23.6 9.3 114 26-158 470-594 (600)
301 PRK10905 cell division protein 21.7 1.4E+02 0.0031 26.1 4.0 68 13-84 244-312 (328)
302 PF05036 SPOR: Sporulation rel 21.7 94 0.002 19.9 2.4 57 62-122 9-65 (76)
303 KOG2854|consensus 21.5 1.1E+02 0.0025 26.9 3.4 21 58-78 212-232 (343)
304 COG5584 Predicted small secret 21.5 1E+02 0.0022 21.8 2.5 27 24-50 30-56 (103)
305 PF10281 Ish1: Putative stress 21.2 97 0.0021 17.5 2.1 17 27-43 3-19 (38)
306 COG5353 Uncharacterized protei 20.5 4.1E+02 0.0089 20.6 6.7 57 15-71 86-155 (161)
307 COG5507 Uncharacterized conser 20.3 1.2E+02 0.0027 21.5 2.7 22 141-162 65-86 (117)
308 PF11823 DUF3343: Protein of u 20.3 1.6E+02 0.0035 19.2 3.4 60 60-125 3-63 (73)
309 COG4010 Uncharacterized protei 20.0 2.4E+02 0.0051 21.7 4.4 46 107-162 118-163 (170)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.1e-38 Score=275.75 Aligned_cols=172 Identities=20% Similarity=0.349 Sum_probs=154.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
.+....++|||++||+++|+++|+++|++||+|++|+|+.++.|++++|||||+|.++++|++||+. ++..+.+++|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3456788999999999999999999999999999999999999999999999999999999999975 677999999999
Q ss_pred cccccccC-CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeC
Q psy1314 90 KRVTKRVN-PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVIC 167 (275)
Q Consensus 90 ~~~~~~~~-~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~ 167 (275)
.++.+... ....+|||+|||+.+|+++|+++|++||+|+.|+|+.++.+++++|||||+|++.++|++||+.++ ..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 98765432 345789999999999999999999999999999999999999999999999999999999999985 6665
Q ss_pred C--eEEEEEEeeeCCCC
Q psy1314 168 G--KEVDVKRVKFNPET 182 (275)
Q Consensus 168 g--~~i~v~~~~~~~~~ 182 (275)
+ ++|+|.+++.....
T Consensus 262 g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCceeEEEEECCccccc
Confidence 5 68888888765443
No 2
>KOG0148|consensus
Probab=100.00 E-value=2.3e-32 Score=220.62 Aligned_cols=171 Identities=23% Similarity=0.518 Sum_probs=154.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~ 85 (275)
..++++......|||+.|+++++-++|++.|.+||+|.+++|++|..|++||||+||.|.+.++|++||.. ++++|..|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 33455556677899999999999999999999999999999999999999999999999999999999985 57899999
Q ss_pred eecccccccccC-----------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEE
Q psy1314 86 KIDPKRVTKRVN-----------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148 (275)
Q Consensus 86 ~i~v~~~~~~~~-----------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 148 (275)
.|+..|+..+.. ..+++|||+||+..+++++|++.|++||+|.+|+|.++ +||+||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 999999876642 34589999999999999999999999999999999987 7899999
Q ss_pred ECCHHHHHHHHhcC-CceeCCeEEEEEEeeeCCCCC
Q psy1314 149 FDDQNVAEQVLANP-KQVICGKEVDVKRVKFNPETM 183 (275)
Q Consensus 149 f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~~~~~ 183 (275)
|++.|.|.+||..+ +.+|.|..|+|.|-+......
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999998 599999999999988766543
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.1e-32 Score=247.21 Aligned_cols=164 Identities=21% Similarity=0.379 Sum_probs=134.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceec-Ceee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIG-NKKI 87 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~-g~~i 87 (275)
...+...++|||+|||++++|++|+++|++||+|.+|+|++| .+++++|||||+|.+.|+|++||+.++ ..+. ++.|
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 444556789999999999999999999999999999999999 889999999999999999999998653 3332 2222
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy1314 88 DPK----------------------------------------------------------------------------- 90 (275)
Q Consensus 88 ~v~----------------------------------------------------------------------------- 90 (275)
.+.
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 111
Q ss_pred -------ccccccC------CCcceeeecCCCCCCCHHHHHHhcccC--CCeEEEEeccCCCCCCeeeEEEEEECCHHHH
Q psy1314 91 -------RVTKRVN------PLKCKIFVGGLTTEISEQDVRDYFSQY--GSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155 (275)
Q Consensus 91 -------~~~~~~~------~~~~~l~V~~l~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a 155 (275)
|+.+... ....+|||+||++++++++|+++|++| |+|+.|+++ ++||||+|++.++|
T Consensus 211 Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A 282 (578)
T TIGR01648 211 GHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDA 282 (578)
T ss_pred CceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHH
Confidence 1110000 012569999999999999999999999 999999875 45999999999999
Q ss_pred HHHHhcCC-ceeCCeEEEEEEeeeCCCC
Q psy1314 156 EQVLANPK-QVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 156 ~~Ai~~~~-~~~~g~~i~v~~~~~~~~~ 182 (275)
++||+.++ ..|.|++|+|.+++++...
T Consensus 283 ~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 283 VKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99999885 8999999999999876543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2e-32 Score=251.18 Aligned_cols=170 Identities=23% Similarity=0.442 Sum_probs=154.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
...++|||+|||+++++++|+++|++||+|.+|.|+.|+.|++++|||||+|.+.++|++||+. ++..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4568999999999999999999999999999999999999999999999999999999999975 678999999998765
Q ss_pred cccc------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHh
Q psy1314 93 TKRV------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160 (275)
Q Consensus 93 ~~~~------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~ 160 (275)
.... ....++|||+|||+++++++|+++|+.||.|..|+|.+++.++.++|||||+|.+.++|.+||+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4221 1123789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-ceeCCeEEEEEEeeeCCCCC
Q psy1314 161 NPK-QVICGKEVDVKRVKFNPETM 183 (275)
Q Consensus 161 ~~~-~~~~g~~i~v~~~~~~~~~~ 183 (275)
.++ ..|+|+.|+|.++..+|...
T Consensus 265 amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcccc
Confidence 996 88999999999999776543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=2.9e-31 Score=235.45 Aligned_cols=167 Identities=23% Similarity=0.420 Sum_probs=150.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
++..+|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ++..+.++.|.|+++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3578999999999999999999999999999999999999999999999999999999999975 577999999999988
Q ss_pred ccccCC-CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC--
Q psy1314 93 TKRVNP-LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICG-- 168 (275)
Q Consensus 93 ~~~~~~-~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g-- 168 (275)
.+.... ..++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++||+.++ ..+.+
T Consensus 81 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 81 RPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred cccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 765443 45789999999999999999999999999999999998888899999999999999999999885 66655
Q ss_pred eEEEEEEeeeCC
Q psy1314 169 KEVDVKRVKFNP 180 (275)
Q Consensus 169 ~~i~v~~~~~~~ 180 (275)
.+|.|.++....
T Consensus 161 ~~i~v~~a~~~~ 172 (352)
T TIGR01661 161 EPITVKFANNPS 172 (352)
T ss_pred eeEEEEECCCCC
Confidence 677887776543
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=7.5e-31 Score=240.50 Aligned_cols=168 Identities=27% Similarity=0.446 Sum_probs=153.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
..+.++|||+|||.++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||.+++..+.+++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccccC-------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHH
Q psy1314 93 TKRVN-------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159 (275)
Q Consensus 93 ~~~~~-------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai 159 (275)
..... ...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 43211 12478999999999999999999999999999999999998899999999999999999999
Q ss_pred hcC-CceeCCeEEEEEEeeeCC
Q psy1314 160 ANP-KQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 160 ~~~-~~~~~g~~i~v~~~~~~~ 180 (275)
+.| +..|.|++|.|.++....
T Consensus 246 ~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 246 EVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred HhcCCcEECCEEEEEEEccCCC
Confidence 988 489999999999987543
No 7
>KOG0117|consensus
Probab=99.97 E-value=3.9e-30 Score=220.50 Aligned_cols=167 Identities=22% Similarity=0.433 Sum_probs=141.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-Ccee-cCe
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYI-GNK 85 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~-~g~ 85 (275)
+..+.+..-+.|||+.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||+|++.++|++||+.+ +++| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 45555667789999999999999999999999999999999999999999999999999999999999864 4433 344
Q ss_pred eecccccc------------------------------------------------------------------------
Q psy1314 86 KIDPKRVT------------------------------------------------------------------------ 93 (275)
Q Consensus 86 ~i~v~~~~------------------------------------------------------------------------ 93 (275)
.|.|..+.
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 44332221
Q ss_pred ------------cccCC------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHH
Q psy1314 94 ------------KRVNP------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155 (275)
Q Consensus 94 ------------~~~~~------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a 155 (275)
+.+.. .-..|||+||+.++|++.|+++|++||.|+.|+.++| ||||.|.++++|
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~da 306 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDA 306 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHH
Confidence 11110 1156999999999999999999999999999998865 999999999999
Q ss_pred HHHHhcCC-ceeCCeEEEEEEeeeCCCC
Q psy1314 156 EQVLANPK-QVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 156 ~~Ai~~~~-~~~~g~~i~v~~~~~~~~~ 182 (275)
.+|++.++ ++|+|..|+|..|++..+.
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999995 9999999999999987554
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.5e-30 Score=228.53 Aligned_cols=168 Identities=20% Similarity=0.318 Sum_probs=145.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecC--eeeccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGN--KKIDPK 90 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g--~~i~v~ 90 (275)
....+|||+|||.++++++|+++|++||+|..+.++.+..++.++|||||+|.+.++|++||+.+ +..+.+ .+|.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 35678999999999999999999999999999999999888999999999999999999999854 555554 455554
Q ss_pred cccccc--------------------------------------------------------------------------
Q psy1314 91 RVTKRV-------------------------------------------------------------------------- 96 (275)
Q Consensus 91 ~~~~~~-------------------------------------------------------------------------- 96 (275)
++....
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 432111
Q ss_pred -------------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHH
Q psy1314 97 -------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQ 157 (275)
Q Consensus 97 -------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~ 157 (275)
.....+|||+|||+.+++++|+++|++||.|..|+|+.|..++.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0001259999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CceeCCeEEEEEEeeeCCC
Q psy1314 158 VLANP-KQVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 158 Ai~~~-~~~~~g~~i~v~~~~~~~~ 181 (275)
||+.| +..|.|+.|+|.++..++.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 99988 5899999999999988764
No 9
>KOG0144|consensus
Probab=99.97 E-value=3.2e-31 Score=226.23 Aligned_cols=170 Identities=28% Similarity=0.501 Sum_probs=150.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC--CceecC--eeecc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG--DHYIGN--KKIDP 89 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~--~~~~~g--~~i~v 89 (275)
.+.-+|||+.||..++|.||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+..+ .+.|.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 55668999999999999999999999999999999999999999999999999999999999864 335554 57778
Q ss_pred cccccccCCC--cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC--ce
Q psy1314 90 KRVTKRVNPL--KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK--QV 165 (275)
Q Consensus 90 ~~~~~~~~~~--~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~--~~ 165 (275)
+.+....+.. +++|||+-|+..+||.+|+++|++||.|++|.|++|.. +.+||||||+|.+.|.|..||+.++ ..
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhcccee
Confidence 8777665543 78999999999999999999999999999999999864 7899999999999999999999985 45
Q ss_pred eCC--eEEEEEEeeeCCCCCC
Q psy1314 166 ICG--KEVDVKRVKFNPETMG 184 (275)
Q Consensus 166 ~~g--~~i~v~~~~~~~~~~~ 184 (275)
+.| .+|.|+|++++.++..
T Consensus 191 meGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eccCCCceEEEecccCCCchH
Confidence 555 7899999999877643
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.1e-29 Score=234.30 Aligned_cols=161 Identities=24% Similarity=0.415 Sum_probs=144.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeeccccccccc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVTKRV 96 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~~~~ 96 (275)
+|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.+ ...+.++.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999865 557999999998875432
Q ss_pred C---CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEE
Q psy1314 97 N---PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVD 172 (275)
Q Consensus 97 ~---~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~ 172 (275)
. ....+|||+|||.++++++|+++|+.||.|..|+|+.+. +++++|||||+|.+.++|++|+++++ ..+.++.|.
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 2 224679999999999999999999999999999999874 57789999999999999999999985 889999998
Q ss_pred EEEeeeC
Q psy1314 173 VKRVKFN 179 (275)
Q Consensus 173 v~~~~~~ 179 (275)
|.....+
T Consensus 161 v~~~~~~ 167 (562)
T TIGR01628 161 VGRFIKK 167 (562)
T ss_pred Eeccccc
Confidence 8665443
No 11
>KOG4205|consensus
Probab=99.96 E-value=8.3e-29 Score=210.57 Aligned_cols=173 Identities=38% Similarity=0.700 Sum_probs=161.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
..+.++|||++|+++++++.|+++|.+||+|.+|.+++++.+++++||+||+|++.+.+.++|....+.|.++.|+++.+
T Consensus 3 ~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 3 SGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRA 82 (311)
T ss_pred ccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceec
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCC-------cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCce
Q psy1314 93 TKRVNPL-------KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQV 165 (275)
Q Consensus 93 ~~~~~~~-------~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~ 165 (275)
.++.... ..+|||++||..+++++|++.|++||.|..+.++.|..+.++++|+||+|.+++++++++....+.
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~ 162 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHD 162 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceee
Confidence 8775432 358999999999999999999999999999999999999999999999999999999999998999
Q ss_pred eCCeEEEEEEeeeCCCCCCC
Q psy1314 166 ICGKEVDVKRVKFNPETMGS 185 (275)
Q Consensus 166 ~~g~~i~v~~~~~~~~~~~~ 185 (275)
|++++++|++|.++......
T Consensus 163 ~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ecCceeeEeeccchhhcccc
Confidence 99999999999999776543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.1e-28 Score=226.96 Aligned_cols=167 Identities=26% Similarity=0.512 Sum_probs=147.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec----Ceee
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG----NKKI 87 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~----g~~i 87 (275)
....++|||+|||.++|+++|+++|++||+|+++.++.+ .+++++|||||+|.+.++|.+|++. ++..+. ++.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345678999999999999999999999999999999998 4789999999999999999999985 566787 8888
Q ss_pred cccccccccC-------------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEE
Q psy1314 88 DPKRVTKRVN-------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148 (275)
Q Consensus 88 ~v~~~~~~~~-------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 148 (275)
.+.++..+.. ...++|||+||++.+++++|+++|++||.|++|+|+.+ .++.++|||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 8876644322 23467999999999999999999999999999999998 678899999999
Q ss_pred ECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCCC
Q psy1314 149 FDDQNVAEQVLANPK-QVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 149 f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~~ 181 (275)
|.+.++|++|+..++ ..|.|++|.|.++..+..
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999884 899999999999987643
No 13
>KOG0145|consensus
Probab=99.96 E-value=2.9e-28 Score=195.96 Aligned_cols=169 Identities=24% Similarity=0.425 Sum_probs=151.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~ 91 (275)
.+....|.|..||.++|+|||+.+|...|+|++|++++|+.+|+|.||+||.|.+++||++|+..+ +..+..+.|+|+.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 344566999999999999999999999999999999999999999999999999999999999964 6689999999999
Q ss_pred cccccCC-CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee--C
Q psy1314 92 VTKRVNP-LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI--C 167 (275)
Q Consensus 92 ~~~~~~~-~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~--~ 167 (275)
+.+.... ....|||++||..+|..+|+++|++||.|...+|+.|..++.+||.+||.|+..++|+.||+.++ +.- +
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 8876544 34789999999999999999999999999999999999999999999999999999999999975 332 3
Q ss_pred CeEEEEEEeeeCCC
Q psy1314 168 GKEVDVKRVKFNPE 181 (275)
Q Consensus 168 g~~i~v~~~~~~~~ 181 (275)
-.+|.|+++.....
T Consensus 198 tepItVKFannPsq 211 (360)
T KOG0145|consen 198 TEPITVKFANNPSQ 211 (360)
T ss_pred CCCeEEEecCCccc
Confidence 36899999876543
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.4e-27 Score=219.12 Aligned_cols=162 Identities=22% Similarity=0.434 Sum_probs=137.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQY------------GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD 79 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~------------G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~ 79 (275)
.....++|||+|||+++|+++|+++|.++ ..|..+.+. +.+|||||+|.+.++|.+||++++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCC
Confidence 44567899999999999999999999985 234344443 347899999999999999998888
Q ss_pred ceecCeeeccccccccc------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE
Q psy1314 80 HYIGNKKIDPKRVTKRV------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE 129 (275)
Q Consensus 80 ~~~~g~~i~v~~~~~~~------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~ 129 (275)
..|.+++|.|....... .....+|||+|||..+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 89999998876432111 112368999999999999999999999999999
Q ss_pred EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 130 FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 130 v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
+.|+.+..++.++|||||+|.+.++|.+||+.|+ ..|.+++|.|.++...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999999999999999999999999884 8999999999998654
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.6e-26 Score=212.35 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=132.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh---CCceecCeeecccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA---GDHYIGNKKIDPKR 91 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~---~~~~~~g~~i~v~~ 91 (275)
++++|||+|||+++|+++|+++|++||+|.+|.|+.+ +++|||+|.+.++|++||+. +...+.+++|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 57999999999999999984 46789999999998
Q ss_pred cccccC-------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHH
Q psy1314 92 VTKRVN-------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQV 158 (275)
Q Consensus 92 ~~~~~~-------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~A 158 (275)
+..+.. ....+|+|.||++.+|+++|+++|++||.|..|.|.++.. +++|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 754321 1124789999999999999999999999999999887643 46899999999999999
Q ss_pred HhcCC-ceeCC--eEEEEEEeeeC
Q psy1314 159 LANPK-QVICG--KEVDVKRVKFN 179 (275)
Q Consensus 159 i~~~~-~~~~g--~~i~v~~~~~~ 179 (275)
++.|+ ..|.+ ..|+|.+++..
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCC
Confidence 99885 77754 47888887754
No 16
>KOG0131|consensus
Probab=99.95 E-value=2.3e-27 Score=181.42 Aligned_cols=170 Identities=23% Similarity=0.389 Sum_probs=152.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
.+.+...+|||+||+..++++.|.|+|-+.|+|.++.|.+++.+...+|||||+|.++|+|+-|++.+ ..++-+++|.|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999964 45889999999
Q ss_pred ccccccc--CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE-EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ce
Q psy1314 90 KRVTKRV--NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE-FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QV 165 (275)
Q Consensus 90 ~~~~~~~--~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~ 165 (275)
..+.... .....+|||+||.+.+++..|.+.|+.||.+.. -+|+++..|+.+++|+||.|.+.|.+.+|+..++ ..
T Consensus 84 ~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 84 NKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred EecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 9887332 234578999999999999999999999998765 4788999999999999999999999999999985 88
Q ss_pred eCCeEEEEEEeeeCC
Q psy1314 166 ICGKEVDVKRVKFNP 180 (275)
Q Consensus 166 ~~g~~i~v~~~~~~~ 180 (275)
++.++++|..+..+.
T Consensus 164 l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKD 178 (203)
T ss_pred hcCCceEEEEEEecC
Confidence 999999999988764
No 17
>KOG0127|consensus
Probab=99.94 E-value=2.1e-26 Score=201.96 Aligned_cols=163 Identities=24% Similarity=0.438 Sum_probs=147.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~~~ 95 (275)
.||||++||+.++.++|.++|+.+|+|..|.++.++.+..++||+||+|+-.|+++.|+... +..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999875 66899999988876544
Q ss_pred cCC---------------------------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEE
Q psy1314 96 VNP---------------------------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148 (275)
Q Consensus 96 ~~~---------------------------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 148 (275)
... ...+|.|.||||.+.+.+|+.+|+.||.|.+|.|++...... .|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEE
Confidence 211 146799999999999999999999999999999997766554 5999999
Q ss_pred ECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCC
Q psy1314 149 FDDQNVAEQVLANPK-QVICGKEVDVKRVKFNP 180 (275)
Q Consensus 149 f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~ 180 (275)
|....+|.+||+.+| +.|.|++|-|.||.++.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999996 89999999999998874
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.1e-25 Score=204.98 Aligned_cols=159 Identities=14% Similarity=0.261 Sum_probs=134.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 14 NDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 14 ~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
.+.++|||+|||+ .+|+++|+++|++||.|.+|+|+.++ +|+|||+|.+.++|++||+ +++..|.+++|.|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999999873 5899999999999999998 467799999998876
Q ss_pred ccccc--------------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCCC--eEEEE
Q psy1314 92 VTKRV--------------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGS--ITEFQ 131 (275)
Q Consensus 92 ~~~~~--------------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~--v~~v~ 131 (275)
+.... ..++.+|||.|||.++++++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 53210 012357999999999999999999999998 88888
Q ss_pred eccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeE------EEEEEeeeC
Q psy1314 132 QPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKE------VDVKRVKFN 179 (275)
Q Consensus 132 i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~------i~v~~~~~~ 179 (275)
+...+. .++++|||+|.+.++|.+||..++ ..|.++. |+|.+++++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 765432 257899999999999999999985 7888875 888777653
No 19
>KOG0109|consensus
Probab=99.93 E-value=5.2e-26 Score=185.65 Aligned_cols=149 Identities=25% Similarity=0.440 Sum_probs=136.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~~~ 95 (275)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ |+||..++...++.||..+ +-+|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999955 55999999999999877
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
...+.+|+|+||.+.++.++|+..|++||+|++|+|++| |+||.|+-.++|..|+..| +.++.|++++|.
T Consensus 75 -sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 75 -SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred -CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 456789999999999999999999999999999999855 8999999999999999998 599999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
.+..+-..
T Consensus 146 ~stsrlrt 153 (346)
T KOG0109|consen 146 LSTSRLRT 153 (346)
T ss_pred eecccccc
Confidence 88876543
No 20
>KOG0124|consensus
Probab=99.93 E-value=5e-26 Score=190.95 Aligned_cols=167 Identities=23% Similarity=0.454 Sum_probs=152.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~ 94 (275)
-++|||+.|++++.|+.|+..|..||+|++|.|-+|+.|++.||||||+|+-+|.|..|++. ++..+.|+.|.|-....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999986 56799999999886544
Q ss_pred ccC------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 95 RVN------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 95 ~~~------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
-.. ..-.+|||..+.++++++||+.+|+.||+|..|.+.++.....++||+||+|.+..+...||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 322 12378999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ceeCCeEEEEEEeeeCCCC
Q psy1314 163 K-QVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 163 ~-~~~~g~~i~v~~~~~~~~~ 182 (275)
| ..|.|..|+|-++...|..
T Consensus 273 NlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred chhhcccceEecccccCCCch
Confidence 8 7899999999888777654
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=7.8e-25 Score=203.35 Aligned_cols=166 Identities=20% Similarity=0.357 Sum_probs=139.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
.+..++|||+|||..+|+++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|.+||+. ++..|.++.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999975 57799999998877
Q ss_pred ccccc-----------------------------CCCcceeeecCCCCCC----------CHHHHHHhcccCCCeEEEEe
Q psy1314 92 VTKRV-----------------------------NPLKCKIFVGGLTTEI----------SEQDVRDYFSQYGSITEFQQ 132 (275)
Q Consensus 92 ~~~~~-----------------------------~~~~~~l~V~~l~~~~----------~~~~l~~~F~~~G~v~~v~i 132 (275)
+.... ......|+|.||.... ..++|+++|++||.|+.|.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 53211 0123567888885321 23689999999999999999
Q ss_pred ccCC---CCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeee
Q psy1314 133 PFDK---SKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKF 178 (275)
Q Consensus 133 ~~~~---~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~ 178 (275)
+++. .+....|++||+|.++++|++||..|+ ..|.|+.|.|.+...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 8652 334567999999999999999999995 899999999988654
No 22
>KOG0127|consensus
Probab=99.93 E-value=8.3e-25 Score=191.96 Aligned_cols=166 Identities=21% Similarity=0.359 Sum_probs=146.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~ 93 (275)
+..+|.|.|||+.+.+.+|+.+|+.||.|.+|.|.+.+..+.. |||||.|.+..+|++||+. +.++|.+++|-|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3778999999999999999999999999999999987665555 9999999999999999996 5779999999999975
Q ss_pred cccC-----------------------------------------------C----------------------------
Q psy1314 94 KRVN-----------------------------------------------P---------------------------- 98 (275)
Q Consensus 94 ~~~~-----------------------------------------------~---------------------------- 98 (275)
++.. .
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 4310 0
Q ss_pred ----------------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 99 ----------------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 99 ----------------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
...+|||.|||+++|+++|.++|++||+|..+.|+.++.|+.++|.|||.|.+..+|.+||+..
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0167999999999999999999999999999999999999999999999999999999999874
Q ss_pred ------C-ceeCCeEEEEEEeeeCCC
Q psy1314 163 ------K-QVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 163 ------~-~~~~g~~i~v~~~~~~~~ 181 (275)
. ..|.|+.|.|..+..+.+
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred CccCCCceEEEeccEEeeeeccchHH
Confidence 2 578999999998887644
No 23
>KOG0145|consensus
Probab=99.91 E-value=9e-24 Score=170.12 Aligned_cols=167 Identities=22% Similarity=0.335 Sum_probs=143.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecC--eeeccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGN--KKIDPK 90 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g--~~i~v~ 90 (275)
-....|||.+||+.+|..||+++|++||.|..-+|+.|..|+.+||.+||.|...++|+.||..+ +++-.+ .+|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 34557999999999999999999999999999999999999999999999999999999999864 333222 455555
Q ss_pred ccccccCC----------------------------------------------------------------Ccceeeec
Q psy1314 91 RVTKRVNP----------------------------------------------------------------LKCKIFVG 106 (275)
Q Consensus 91 ~~~~~~~~----------------------------------------------------------------~~~~l~V~ 106 (275)
.+...... ...+|||-
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 54322100 11779999
Q ss_pred CCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCC
Q psy1314 107 GLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFNP 180 (275)
Q Consensus 107 ~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~ 180 (275)
||.++++|..|-++|.+||.|.+|+|++|-.|.+-+||+||++.+-++|..||..++ ..|.++.|.|.+...++
T Consensus 285 NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999985 88999999999876553
No 24
>KOG4211|consensus
Probab=99.91 E-value=1.5e-22 Score=176.21 Aligned_cols=167 Identities=22% Similarity=0.316 Sum_probs=139.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
++.++...|.+.+|||++|++||.+||+.+ .|+++.+.+ .+++..|-|||+|.++|++++||+++...+..+.|+|-
T Consensus 5 ~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVF 81 (510)
T ss_pred cCCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEE
Confidence 356677889999999999999999999999 577866655 47999999999999999999999999889999999887
Q ss_pred ccccccCC------------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHH
Q psy1314 91 RVTKRVNP------------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQV 158 (275)
Q Consensus 91 ~~~~~~~~------------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~A 158 (275)
.+...+.+ ....|.+.+||+.||++||.++|+..-.|....++.....+++.|-|||+|++.+.|++|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 76433221 346789999999999999999999886555533233334567899999999999999999
Q ss_pred HhcCCceeCCeEEEEEEeeeCC
Q psy1314 159 LANPKQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 159 i~~~~~~~~g~~i~v~~~~~~~ 180 (275)
+..+...|..+.|+|-++....
T Consensus 162 l~rhre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 162 LGRHRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred HHHHHHhhccceEEeehhHHHH
Confidence 9999999999999998766543
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.3e-22 Score=186.04 Aligned_cols=161 Identities=22% Similarity=0.411 Sum_probs=134.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~ 93 (275)
..++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+. ++..|.+++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999999999999999999999999999999985 5779999999888732
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy1314 94 KRV----------------------------------------------------------------------------- 96 (275)
Q Consensus 94 ~~~----------------------------------------------------------------------------- 96 (275)
...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 100
Q ss_pred --------------CCCcceeeecCCCCCCC----------HHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 97 --------------NPLKCKIFVGGLTTEIS----------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 97 --------------~~~~~~l~V~~l~~~~~----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
.....+|+|.||....+ .+||++.|++||.|+.|.|... ...|++||+|.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCH
Confidence 01224567777744433 3689999999999999988643 3478999999999
Q ss_pred HHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 153 NVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 153 e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
++|.+|++.|+ ..++|+.|.+.+....
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99999999995 8999999999887643
No 26
>KOG0123|consensus
Probab=99.90 E-value=4.3e-23 Score=181.52 Aligned_cols=154 Identities=25% Similarity=0.429 Sum_probs=140.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~~~~~ 95 (275)
..|||+ +++|+..|.++|+++|+|.++++.+|. | +-|||||.|.++++|++||..++ ..+.+++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 7 99999999999999999999765 5899999999999653
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~ 174 (275)
.. .|||.||+++++..+|.++|+.||.|.+|++.++.+. ++|| ||+|+++++|++||++++ ..+.+++|.|.
T Consensus 76 ~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 76 PS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred Cc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 32 3999999999999999999999999999999998654 8999 999999999999999985 88999999999
Q ss_pred EeeeCCCCC
Q psy1314 175 RVKFNPETM 183 (275)
Q Consensus 175 ~~~~~~~~~ 183 (275)
....+.++.
T Consensus 149 ~~~~~~er~ 157 (369)
T KOG0123|consen 149 LFERKEERE 157 (369)
T ss_pred eccchhhhc
Confidence 888877654
No 27
>KOG0147|consensus
Probab=99.89 E-value=1.2e-23 Score=185.41 Aligned_cols=175 Identities=25% Similarity=0.410 Sum_probs=156.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
.-..++.+.++||+-.|+..+++.+|.+||+.+|+|.+|.||.|+.+.+++|.+||+|.+.+.+..||.+.++.+.+.+|
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv 250 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPV 250 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCcee
Confidence 33455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCC---------------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 88 DPKRVTKRVNP---------------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 88 ~v~~~~~~~~~---------------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
.|+.....++. +-.+|||+||.+++++++|+.+|++||.|..|.+.+|..|++++||+||+|.+.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred EecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 98876433221 113499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-ceeCCeEEEEEEeeeCCCC
Q psy1314 153 NVAEQVLANPK-QVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 153 e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~~~ 182 (275)
++|++|++.+| ..|-|+.|+|.....+...
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 99999999985 8899999999887776543
No 28
>KOG0148|consensus
Probab=99.89 E-value=7.3e-23 Score=165.77 Aligned_cols=138 Identities=25% Similarity=0.454 Sum_probs=118.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~ 91 (275)
++++.++|||+||+.++||+-|..+|++.|+|++|+|+.+. |.|.+
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~w 47 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNW 47 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hcccc
Confidence 46778999999999999999999999999999999999871 11111
Q ss_pred ccc------ccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c
Q psy1314 92 VTK------RVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q 164 (275)
Q Consensus 92 ~~~------~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~ 164 (275)
+.. ........+||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|...++|+.||..|+ .
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 111 111124568999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred eeCCeEEEEEEeeeCCCCC
Q psy1314 165 VICGKEVDVKRVKFNPETM 183 (275)
Q Consensus 165 ~~~g~~i~v~~~~~~~~~~ 183 (275)
-|..|.|+..|+..||..+
T Consensus 128 WlG~R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEM 146 (321)
T ss_pred eeccceeeccccccCcccc
Confidence 8999999999999998543
No 29
>KOG0110|consensus
Probab=99.88 E-value=2e-22 Score=182.16 Aligned_cols=164 Identities=26% Similarity=0.422 Sum_probs=142.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC---CCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT---GQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKR 91 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t---g~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~ 91 (275)
.++|||.||++++|.++|..+|.+.|.|.+|.|...+.- -.|.||+||+|.++++|++|++.++ +.+.|+.|.++.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 334999999999999999999999999999988765432 1367999999999999999999875 899999999888
Q ss_pred cc--------cccCC--CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 92 VT--------KRVNP--LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 92 ~~--------~~~~~--~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
+. ..... ...+|+|.|||+.++..+|+++|..||.|..|+|+.......++|||||+|-++.+|..|+..
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 76 11111 235899999999999999999999999999999998755667799999999999999999999
Q ss_pred C-CceeCCeEEEEEEeeeC
Q psy1314 162 P-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 162 ~-~~~~~g~~i~v~~~~~~ 179 (275)
+ .+.|.|+.|.+.|+...
T Consensus 675 l~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hcccceechhhheehhccc
Confidence 8 58899999999998765
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.2e-20 Score=145.45 Aligned_cols=87 Identities=22% Similarity=0.537 Sum_probs=80.2
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
.....++|||+|||+++++++|+++|++||+|..|.|+.|..+++++|||||+|.+.++|++||+.+ ++.|++++|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445688999999999999999999999999999999999999999999999999999999999987 589999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
++..++..
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876654
No 31
>KOG0146|consensus
Probab=99.86 E-value=1.2e-21 Score=158.59 Aligned_cols=168 Identities=25% Similarity=0.450 Sum_probs=138.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC--ceecC--eeec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD--HYIGN--KKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~--~~~~g--~~i~ 88 (275)
..+.++|||+-|.+.-.|||++.+|..||+|++|.+++.+ ++.+|||+||+|.+..+|..||..+. ..+-| ..+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3478899999999999999999999999999999999985 69999999999999999999998642 12222 1222
Q ss_pred cccccccc------------------------------------------------------------------------
Q psy1314 89 PKRVTKRV------------------------------------------------------------------------ 96 (275)
Q Consensus 89 v~~~~~~~------------------------------------------------------------------------ 96 (275)
|+.+...+
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 22221110
Q ss_pred --------------------------------------------------------------------------------
Q psy1314 97 -------------------------------------------------------------------------------- 96 (275)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (275)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ---------------------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEE
Q psy1314 97 ---------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISF 149 (275)
Q Consensus 97 ---------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f 149 (275)
.+..|.|||-.||.+..+.+|-+.|-+||.|++.+|..|+.|+.+|+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 00128899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCCC
Q psy1314 150 DDQNVAEQVLANPK-QVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 150 ~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~~ 181 (275)
+++.+|+.||..|| ..|.=++|+|....++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999986 667778888876666644
No 32
>KOG0144|consensus
Probab=99.85 E-value=3.3e-21 Score=165.22 Aligned_cols=167 Identities=28% Similarity=0.442 Sum_probs=143.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc--eecC--eeecc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH--YIGN--KKIDP 89 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~--~~~g--~~i~v 89 (275)
.++++|||+.|++.+||.+|+++|++||.|++|.|+++. .+.+||||||+|.+.|.|..||+.++. ++.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 458899999999999999999999999999999999994 699999999999999999999997543 4443 56666
Q ss_pred cccccccCC-----------------------------------------------------------------------
Q psy1314 90 KRVTKRVNP----------------------------------------------------------------------- 98 (275)
Q Consensus 90 ~~~~~~~~~----------------------------------------------------------------------- 98 (275)
+++.++++.
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 665433110
Q ss_pred --------------------------------------------------------------------------------
Q psy1314 99 -------------------------------------------------------------------------------- 98 (275)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (275)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred --------------------------------------------------------------CcceeeecCCCCCCCHHH
Q psy1314 99 --------------------------------------------------------------LKCKIFVGGLTTEISEQD 116 (275)
Q Consensus 99 --------------------------------------------------------------~~~~l~V~~l~~~~~~~~ 116 (275)
....|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 004589999999999999
Q ss_pred HHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCCC
Q psy1314 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 117 l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~~ 181 (275)
|-..|..||.|...++..|+.|+.+++|+||.|++..+|..||..|+ ..|..++++|....++-+
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999986 788999998877766543
No 33
>KOG0105|consensus
Probab=99.85 E-value=4.7e-20 Score=141.66 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=121.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
...+++|||+|||.++.+.+|+++|.+||.|.+|.|...+ ....||||+|+++.+|+.||.- ++-.+.+-.|.|+.
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567899999999999999999999999999999997653 3456999999999999999986 45688898998887
Q ss_pred cccc---------------------------cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeE
Q psy1314 92 VTKR---------------------------VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF 144 (275)
Q Consensus 92 ~~~~---------------------------~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~ 144 (275)
+..- ......+|.|++||.+.+|+||+++..+-|.|....+.+| |.
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GV 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cc
Confidence 6432 1234578999999999999999999999999999998876 36
Q ss_pred EEEEECCHHHHHHHHhcCC
Q psy1314 145 CFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 145 afV~f~~~e~a~~Ai~~~~ 163 (275)
+.|+|...|+.+-||.++.
T Consensus 153 GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeeehhhHHHHHHhhc
Confidence 8999999999999999874
No 34
>KOG0123|consensus
Probab=99.83 E-value=6.9e-20 Score=161.30 Aligned_cols=157 Identities=25% Similarity=0.486 Sum_probs=137.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccccC
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKRVN 97 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~~~ 97 (275)
|||.||++++|.++|.++|+.||.|.+|++.++.. + ++|| ||+|+++++|++|+++ ++..+.+++|.|-....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999854 5 9999 9999999999999997 46688889888765544332
Q ss_pred ---------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeC
Q psy1314 98 ---------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVIC 167 (275)
Q Consensus 98 ---------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~ 167 (275)
..-..++|.+++.+++++.|+.+|..+|.|..+.++.+.. +.+++|+||.|.++++|..|++.++ ..+.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 2235689999999999999999999999999999998865 4489999999999999999999986 6666
Q ss_pred CeEEEEEEeeeC
Q psy1314 168 GKEVDVKRVKFN 179 (275)
Q Consensus 168 g~~i~v~~~~~~ 179 (275)
+..+.|..+..+
T Consensus 235 ~~~~~V~~aqkk 246 (369)
T KOG0123|consen 235 DKELYVGRAQKK 246 (369)
T ss_pred ccceeecccccc
Confidence 788888877764
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.6e-18 Score=132.45 Aligned_cols=86 Identities=30% Similarity=0.548 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.......++|||+|||+++|+++|+++|++||+|++|.|+.++.|++++|||||+|.+.++|++||+. +++.|.+++|.
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999974 67899999999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++..+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9988643
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=2.6e-17 Score=151.87 Aligned_cols=79 Identities=15% Similarity=0.425 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~ 92 (275)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|.+||+.+ +..+.|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999864 56788888876553
No 37
>KOG4212|consensus
Probab=99.73 E-value=9.8e-17 Score=138.13 Aligned_cols=160 Identities=22% Similarity=0.393 Sum_probs=134.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKR 91 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~ 91 (275)
...+.|||.|||++...++|+++|. +.|+|+.|.++.| .+++++|+|.|+|+++|.+++|++.++ +.+.+++|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3445699999999999999999996 5799999999999 579999999999999999999999764 589999998776
Q ss_pred ccccc---------------------------------------------------------------------------
Q psy1314 92 VTKRV--------------------------------------------------------------------------- 96 (275)
Q Consensus 92 ~~~~~--------------------------------------------------------------------------- 96 (275)
....+
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 43210
Q ss_pred -----------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c
Q psy1314 97 -----------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q 164 (275)
Q Consensus 97 -----------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~ 164 (275)
.+...++||.||...+....|++.|.--|.|+.|.+-.|++. .++|+|.++|..+-+|..||.+++ .
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhccC
Confidence 001156899999999999999999999999999999888774 789999999999999999999985 4
Q ss_pred eeCCeEEEEEE
Q psy1314 165 VICGKEVDVKR 175 (275)
Q Consensus 165 ~~~g~~i~v~~ 175 (275)
-+..++.++..
T Consensus 280 g~~~~~~~~Rl 290 (608)
T KOG4212|consen 280 GLFDRRMTVRL 290 (608)
T ss_pred CCccccceeec
Confidence 55556655543
No 38
>KOG4211|consensus
Probab=99.71 E-value=1e-15 Score=133.90 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=127.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
.....|.+.+||+.||++||.+||+-.-.|.. |.++.++ -+++.|.|||.|++.++|++||..+.+.|..+-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 56778999999999999999999998865555 5555554 477999999999999999999999888888887776543
Q ss_pred cccc----------------------------------------------------------------------------
Q psy1314 93 TKRV---------------------------------------------------------------------------- 96 (275)
Q Consensus 93 ~~~~---------------------------------------------------------------------------- 96 (275)
...+
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 2110
Q ss_pred -C-----------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHH
Q psy1314 97 -N-----------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQV 158 (275)
Q Consensus 97 -~-----------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~A 158 (275)
. .....++.++||+..++.+|..+|+..-.+ .|+|... .+++..|-|+|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhh
Confidence 0 001558889999999999999999977554 5555544 4578889999999999999999
Q ss_pred HhcCCceeCCeEEEEEEe
Q psy1314 159 LANPKQVICGKEVDVKRV 176 (275)
Q Consensus 159 i~~~~~~~~g~~i~v~~~ 176 (275)
+.+.+..+..+.|++...
T Consensus 338 mskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 338 MGKDGANMGHRYVELFLN 355 (510)
T ss_pred hccCCcccCcceeeeccc
Confidence 999888888888877543
No 39
>KOG0149|consensus
Probab=99.71 E-value=3.1e-17 Score=131.00 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
.-..++|||++|+|++++++|+++|++||+|++..|+.|+.|++||||+||+|++.|+|.+|++..+-.|+||+..+..+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 33567899999999999999999999999999999999999999999999999999999999998899999999888776
Q ss_pred cc
Q psy1314 93 TK 94 (275)
Q Consensus 93 ~~ 94 (275)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.71 E-value=2.7e-16 Score=144.98 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
...++|||+|||.++|+++|+++|++| |+|++|.+++ +||||+|.+.++|++||+ +++..|.++.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999998764 499999999999999998 46789999999999
Q ss_pred cccccc
Q psy1314 91 RVTKRV 96 (275)
Q Consensus 91 ~~~~~~ 96 (275)
++.+..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 987643
No 41
>KOG0149|consensus
Probab=99.69 E-value=4.4e-17 Score=130.17 Aligned_cols=81 Identities=32% Similarity=0.578 Sum_probs=76.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
..-.+|||++|+|.+..+.|+++|++||+|++..|+.|+.++++|||+||+|.|.|+|.+|++..+..|+||+..|..|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred e
Q psy1314 178 F 178 (275)
Q Consensus 178 ~ 178 (275)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 42
>KOG4206|consensus
Probab=99.66 E-value=3.4e-15 Score=119.06 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=124.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeee
Q psy1314 13 RNDERKLFVGGLHRNTGEKEIND----YFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKI 87 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~----~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i 87 (275)
..+..||||.||+..+..++|+. +|++||+|.+|.... |.+.+|-|||.|.+.+.|..|+..+ +-.+-++++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34555999999999999999988 999999999888875 4678999999999999999999865 557778888
Q ss_pred ccccccccc---------------------------------------------------CCCcceeeecCCCCCCCHHH
Q psy1314 88 DPKRVTKRV---------------------------------------------------NPLKCKIFVGGLTTEISEQD 116 (275)
Q Consensus 88 ~v~~~~~~~---------------------------------------------------~~~~~~l~V~~l~~~~~~~~ 116 (275)
.++++.... ..++..|++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 776654321 12346789999999999999
Q ss_pred HHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC-CeEEEEEEe
Q psy1314 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC-GKEVDVKRV 176 (275)
Q Consensus 117 l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~-g~~i~v~~~ 176 (275)
|..+|++|.-...|+++... .+.|||+|.+...|..|...+ +..+. ...+.|..+
T Consensus 163 l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 99999999988999887643 568999999998888888875 23332 445555443
No 43
>KOG0110|consensus
Probab=99.65 E-value=1.9e-15 Score=137.32 Aligned_cols=164 Identities=20% Similarity=0.332 Sum_probs=128.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc-eecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH-YIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~-~~~g~~i~v~ 90 (275)
.....+.|+|+|||..+..++|.++|..||+|..+.|... |. -++|+|.++.+|++|+..+.. .+..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 3455678999999999999999999999999999966532 11 499999999999999986532 3433344333
Q ss_pred cccccc---------------------------------------------------CCCcceeeecCCCCCCCHHHHHH
Q psy1314 91 RVTKRV---------------------------------------------------NPLKCKIFVGGLTTEISEQDVRD 119 (275)
Q Consensus 91 ~~~~~~---------------------------------------------------~~~~~~l~V~~l~~~~~~~~l~~ 119 (275)
|+.... ....++|||.||++.+|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 321000 00114499999999999999999
Q ss_pred hcccCCCeEEEEeccCCCC---CCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeCCC
Q psy1314 120 YFSQYGSITEFQQPFDKSK---NMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 120 ~F~~~G~v~~v~i~~~~~~---~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~~~ 181 (275)
+|...|.|..+.|...++. -.+.||+||+|.++++|+.|++.|. +.|+|+.|.|.++..++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~ 600 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA 600 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc
Confidence 9999999999988865432 1345999999999999999999996 999999999999984443
No 44
>KOG0106|consensus
Probab=99.64 E-value=3.2e-16 Score=126.08 Aligned_cols=141 Identities=23% Similarity=0.513 Sum_probs=119.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~ 95 (275)
..|||++||+.+.+++|.++|..||.|.+|.|+. ||+||+|.+..+|+.|+.. ++..|.+..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999999865 4899999999999999875 456777766666665521
Q ss_pred ---------------------cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHH
Q psy1314 96 ---------------------VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNV 154 (275)
Q Consensus 96 ---------------------~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~ 154 (275)
.....+.|.|.+++..+.+++|+++|.++|.+....+ .++++||+|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 0123478999999999999999999999999855443 25689999999999
Q ss_pred HHHHHhcC-CceeCCeEEEE
Q psy1314 155 AEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 155 a~~Ai~~~-~~~~~g~~i~v 173 (275)
|.+||.++ +..+.++.|++
T Consensus 146 a~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhcchhccchhhcCceeee
Confidence 99999998 58899999999
No 45
>KOG0122|consensus
Probab=99.64 E-value=1e-15 Score=122.81 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=78.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~ 88 (275)
..+.+++.+|.|.|||.+++|++|+++|.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||+.+ +.-++.--|.
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 346678999999999999999999999999999999999999999999999999999999999999964 6678888889
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+|+.++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998764
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.9e-15 Score=102.03 Aligned_cols=69 Identities=36% Similarity=0.744 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
|||+|||.++|+++|+++|++||+|..+.++.+ .++.++++|||+|.+.++|++|++ +++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 678899999999999999999999 577888888763
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.1e-15 Score=134.13 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||++||+++|+++|+++|++||+|+.|+|++|..+++++|||||+|.++++|++||+.| +..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345689999999999999999999999999999999999999999999999999999999999987 4889999999988
Q ss_pred eee
Q psy1314 176 VKF 178 (275)
Q Consensus 176 ~~~ 178 (275)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 764
No 48
>KOG0147|consensus
Probab=99.62 E-value=2.2e-15 Score=133.41 Aligned_cols=158 Identities=21% Similarity=0.415 Sum_probs=122.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~ 95 (275)
.+|+|+||.+++++++|+.+|+.||+|+.|.++.+..||+++||+||+|.+.++|++|++. ++-.+-|+.|.|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3499999999999999999999999999999999988999999999999999999999765 566888888875443211
Q ss_pred cC------------------------------------------------------------------------------
Q psy1314 96 VN------------------------------------------------------------------------------ 97 (275)
Q Consensus 96 ~~------------------------------------------------------------------------------ 97 (275)
..
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 00
Q ss_pred --CCcceeeecCCC--CCCC--------HHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c
Q psy1314 98 --PLKCKIFVGGLT--TEIS--------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q 164 (275)
Q Consensus 98 --~~~~~l~V~~l~--~~~~--------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~ 164 (275)
..+.++.+.|+= ...| .+|+.+...+||.|..|.|-+. +-|+.||.|.+.+.|..|+..++ .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 001223333331 1111 2677778889999988876543 34899999999999999999985 8
Q ss_pred eeCCeEEEEEEeeeC
Q psy1314 165 VICGKEVDVKRVKFN 179 (275)
Q Consensus 165 ~~~g~~i~v~~~~~~ 179 (275)
.+.|+.|+..+....
T Consensus 514 WF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 514 WFAGRMITAKYLPLE 528 (549)
T ss_pred hhccceeEEEEeehh
Confidence 899999998876544
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=4.9e-15 Score=100.19 Aligned_cols=69 Identities=30% Similarity=0.648 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeec
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKID 88 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~ 88 (275)
|+|+|||+++++++|+++|+.+|.|..+.+..++. ++++++|||+|.++++|.+|++.++ ..+.++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 8999999999999999999999876 789998763
No 50
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=120.97 Aligned_cols=124 Identities=25% Similarity=0.517 Sum_probs=107.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecccccc-
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVT- 93 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~~~- 93 (275)
.++|||+|||.++|+++|.++|.+||+|..+.+..++.+++++|+|||+|.+.++|..|++.++ ..|.+++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999875 79999999998843
Q ss_pred ---cccCC---------------------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCC
Q psy1314 94 ---KRVNP---------------------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKN 139 (275)
Q Consensus 94 ---~~~~~---------------------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~ 139 (275)
.+... ....+++.+++..++..++...|..++.+..+.+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGK 264 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCc
Confidence 21111 12568999999999999999999999999777776554433
No 51
>KOG0113|consensus
Probab=99.59 E-value=6.1e-15 Score=121.55 Aligned_cols=92 Identities=22% Similarity=0.415 Sum_probs=82.9
Q ss_pred cccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCc
Q psy1314 2 AYRANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDH 80 (275)
Q Consensus 2 a~~~~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~ 80 (275)
-|+.+.+.....++-+||||+-|+.+++|.+|++.|+.||+|+.|.|++++.|++++|||||+|+++.+..+|.+. .+.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3566667777779999999999999999999999999999999999999999999999999999999999999885 577
Q ss_pred eecCeeecccccc
Q psy1314 81 YIGNKKIDPKRVT 93 (275)
Q Consensus 81 ~~~g~~i~v~~~~ 93 (275)
+|+++.|.|..-.
T Consensus 167 ~Idgrri~VDvER 179 (335)
T KOG0113|consen 167 KIDGRRILVDVER 179 (335)
T ss_pred eecCcEEEEEecc
Confidence 9999998877543
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=9e-15 Score=120.77 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
..++|||+|||+++|+++|+++|+.||+|++|.|+.++. ++|||||+|.++++|+.||.+++..|.++.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 367999999999999999999999999999999998853 57899999999999999999889999999999998865
Q ss_pred ccC
Q psy1314 95 RVN 97 (275)
Q Consensus 95 ~~~ 97 (275)
...
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 443
No 53
>KOG0122|consensus
Probab=99.59 E-value=5.3e-15 Score=118.78 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=76.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~ 176 (275)
...++|.|.||+.++++++|+++|.+||.|..|.|.+|++|+.+||||||+|.+.++|.+||..|+ .-++.--|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999999999999999999999999999999999985 7788889999999
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=8.1e-15 Score=98.85 Aligned_cols=69 Identities=30% Similarity=0.681 Sum_probs=64.1
Q ss_pred eeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEE
Q psy1314 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVD 172 (275)
Q Consensus 103 l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~ 172 (275)
|||+|||.++++++|+++|++||.|..+.+..+ .++.++++|||+|.+.++|++|++.+ +..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 67888999999999999999999976 5889998874
No 55
>KOG1548|consensus
Probab=99.57 E-value=1.6e-13 Score=115.38 Aligned_cols=165 Identities=15% Similarity=0.257 Sum_probs=130.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-Cc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DH 80 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~ 80 (275)
..++.-+..|||.+||.++|.+++.++|++||.|.. |+|.++. .|..+|-+.+.|-..|+++.|++.+ ..
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc
Confidence 344556677999999999999999999999998763 7788874 4999999999999999999999976 55
Q ss_pred eecCeeecccccccc---------------------------------------cCCCcceeeecCCCC----CCC----
Q psy1314 81 YIGNKKIDPKRVTKR---------------------------------------VNPLKCKIFVGGLTT----EIS---- 113 (275)
Q Consensus 81 ~~~g~~i~v~~~~~~---------------------------------------~~~~~~~l~V~~l~~----~~~---- 113 (275)
.+.++.|.|+.+.-. .....++|.|.|+=. ..+
T Consensus 207 ~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 888999988876421 011236788888732 223
Q ss_pred ---HHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 114 ---EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 114 ---~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
.++|++-.++||.|..|.|.-. .+.|.+.|.|.+.++|..||+.| +..+.|+.|+......+
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 3566777889999999987633 35788999999999999999999 58899999988765543
No 56
>KOG0125|consensus
Probab=99.56 E-value=6.8e-15 Score=122.74 Aligned_cols=96 Identities=18% Similarity=0.402 Sum_probs=79.7
Q ss_pred ecCeeeccccccccc-CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHh
Q psy1314 82 IGNKKIDPKRVTKRV-NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160 (275)
Q Consensus 82 ~~g~~i~v~~~~~~~-~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~ 160 (275)
..+.++.+..+...+ ....++|+|+|||+...+.||+..|++||.|.+|+|+.+. .-+|||+||+|++.+||++|-+
T Consensus 77 t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa 154 (376)
T KOG0125|consen 77 TDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARA 154 (376)
T ss_pred CCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHH
Confidence 344444444443332 2345899999999999999999999999999999999874 3479999999999999999999
Q ss_pred cCC-ceeCCeEEEEEEeeeC
Q psy1314 161 NPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 161 ~~~-~~~~g~~i~v~~~~~~ 179 (275)
+++ ..|.||+|+|..+..+
T Consensus 155 ~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 155 ELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HhhcceeeceEEEEeccchh
Confidence 985 8999999999988766
No 57
>KOG0121|consensus
Probab=99.56 E-value=6.4e-15 Score=106.91 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=76.1
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
.+++|||+||++.++|++|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.|++-+ ++.|+.++|.+.+..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4789999999999999999999999999999999999999999999999999999999999988 588999999988765
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
--.+
T Consensus 115 GF~e 118 (153)
T KOG0121|consen 115 GFVE 118 (153)
T ss_pred cchh
Confidence 4443
No 58
>KOG0125|consensus
Probab=99.56 E-value=1.5e-14 Score=120.66 Aligned_cols=96 Identities=23% Similarity=0.378 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec
Q psy1314 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG 83 (275)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~ 83 (275)
...+..+..+..++|+|.|||+...|-||+..|++||+|.+|.||.+. .-||||+||+|++.+||++|-++ ++..+.
T Consensus 85 ~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 85 QPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceee
Confidence 345556667788999999999999999999999999999999999873 56899999999999999999876 588999
Q ss_pred CeeecccccccccCCCcce
Q psy1314 84 NKKIDPKRVTKRVNPLKCK 102 (275)
Q Consensus 84 g~~i~v~~~~~~~~~~~~~ 102 (275)
||+|+|..+..+....+.+
T Consensus 163 GRkIEVn~ATarV~n~K~~ 181 (376)
T KOG0125|consen 163 GRKIEVNNATARVHNKKKK 181 (376)
T ss_pred ceEEEEeccchhhccCCcc
Confidence 9999999998876555443
No 59
>KOG0121|consensus
Probab=99.56 E-value=9.7e-15 Score=105.95 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
....+++|||+||+..++||+|.++|+++|+|..|.|=.|+.+..+=|||||+|.+.++|+.||+. ++..+..++|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 346789999999999999999999999999999999999999999999999999999999999996 4678888888887
Q ss_pred ccc
Q psy1314 91 RVT 93 (275)
Q Consensus 91 ~~~ 93 (275)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 753
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.9e-14 Score=96.39 Aligned_cols=69 Identities=23% Similarity=0.578 Sum_probs=63.2
Q ss_pred eeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEE
Q psy1314 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVD 172 (275)
Q Consensus 103 l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~ 172 (275)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +.++++|||+|.++++|++|++.++ ..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999877 8899999999999999999999986 899999874
No 61
>KOG1457|consensus
Probab=99.54 E-value=1.1e-13 Score=109.85 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=109.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee-CCCCCCcccEEEEEEccHHHHHHHHHhCC-ceec---C
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKN-DPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIG---N 84 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~-~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~---g 84 (275)
..++..-+||||.+||.++...+|..+|..|--.+.+.|.. ++.....+-++||+|.+..+|.+|+++++ ..|+ +
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 34456689999999999999999999999997777776654 33333456799999999999999998753 3333 1
Q ss_pred eeeccccccc--ccC-----------------------------------------------------------------
Q psy1314 85 KKIDPKRVTK--RVN----------------------------------------------------------------- 97 (275)
Q Consensus 85 ~~i~v~~~~~--~~~----------------------------------------------------------------- 97 (275)
..+.++.++. +..
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~ 187 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPD 187 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhh
Confidence 2222222211 000
Q ss_pred --------------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHH
Q psy1314 98 --------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQ 157 (275)
Q Consensus 98 --------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~ 157 (275)
....+|||.||..+++|++|+.+|+.|--...++|... .+ ...||++|++.+.|..
T Consensus 188 ~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 188 SKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATD 263 (284)
T ss_pred hcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHH
Confidence 00156999999999999999999999977666666432 12 4468999999999999
Q ss_pred HHhcC
Q psy1314 158 VLANP 162 (275)
Q Consensus 158 Ai~~~ 162 (275)
|+..+
T Consensus 264 am~~l 268 (284)
T KOG1457|consen 264 AMNHL 268 (284)
T ss_pred HHHHh
Confidence 99884
No 62
>KOG1365|consensus
Probab=99.54 E-value=1.3e-14 Score=123.21 Aligned_cols=163 Identities=19% Similarity=0.304 Sum_probs=128.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQY----GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~----G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
+.-.|.+++||+++++.|+.+||..- +.++.|.+++.+ +++..|-|||.|..+++|+.||.++...+..|.|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34568888999999999999999632 346677777764 6899999999999999999999998878877777655
Q ss_pred ccccc--------------------------------cCCCcceeeecCCCCCCCHHHHHHhcccCCC-eEE--EEeccC
Q psy1314 91 RVTKR--------------------------------VNPLKCKIFVGGLTTEISEQDVRDYFSQYGS-ITE--FQQPFD 135 (275)
Q Consensus 91 ~~~~~--------------------------------~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~-v~~--v~i~~~ 135 (275)
.+... ....+.+|.+++||+.++.++|-++|..|-. |.. |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 44321 1122467999999999999999999998853 333 666655
Q ss_pred CCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 136 KSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 136 ~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
..+++.|-|||+|.+.|+|.+|..+. ++....+.|+|-.+...
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 45888999999999999999998887 45556888988766543
No 63
>KOG0107|consensus
Probab=99.54 E-value=4.1e-14 Score=108.27 Aligned_cols=78 Identities=26% Similarity=0.514 Sum_probs=71.3
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
..++|||+||+..+++.+|+.+|..||+|..|+|... +.|||||||+++.+|+.|+..|+ ..|+|..|.|...+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998764 57999999999999999999995 89999999999888
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
-.+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7654
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.7e-14 Score=114.24 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
...+|||+||++.+|+++|+++|+.||+|++|.|+++. +.+++|||+|+++++++.||.+++..|.+++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999884 456799999999999999999999999999999887654
Q ss_pred cc
Q psy1314 95 RV 96 (275)
Q Consensus 95 ~~ 96 (275)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 33
No 65
>KOG4207|consensus
Probab=99.53 E-value=3.5e-14 Score=111.37 Aligned_cols=83 Identities=28% Similarity=0.487 Sum_probs=77.7
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
-...|.|-||.+.++.++|+.+|++||.|-+|.|+.|+.|..++|||||.|.+..+|+.|++.|+ .+|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999995 89999999999988
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
....
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 6654
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.5e-14 Score=115.33 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=70.3
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
.++|||+|||+.+++++|+++|+.||.|.+|+|+.++. +++||||+|.++++|+.||...+..|.++.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 46899999999999999999999999999999998864 478999999999999999986679999999999998744
No 67
>KOG0105|consensus
Probab=99.49 E-value=1.6e-13 Score=105.87 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
..+++|||+|||.++.+.+|+++|-+||.|.+|++... .....||||+|+++.+|+.||.-- ...+++..|.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34689999999999999999999999999999987543 234679999999999999999987 48899999999987
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 643
No 68
>KOG0129|consensus
Probab=99.49 E-value=8.9e-13 Score=116.43 Aligned_cols=165 Identities=23% Similarity=0.412 Sum_probs=123.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC-CC--Cccc---EEEEEEccHHHHHHHHHhCCc-----
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPH-TG--QSRG---FAFVTFTTQKAVDDLLAAGDH----- 80 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-tg--~~~G---~afV~f~~~e~a~~al~~~~~----- 80 (275)
...-+++|||++||++++|++|...|..||.+. +....... .+ .++| |+|+.|+++..+++.|...-.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 345578899999999999999999999999863 33332111 11 2466 999999999999988875321
Q ss_pred -------eecCeeecccccc----------cccCCCcceeeecCCCCCCCHHHHHHhcc-cCCCeEEEEeccCCCCCCee
Q psy1314 81 -------YIGNKKIDPKRVT----------KRVNPLKCKIFVGGLTTEISEQDVRDYFS-QYGSITEFQQPFDKSKNMKK 142 (275)
Q Consensus 81 -------~~~g~~i~v~~~~----------~~~~~~~~~l~V~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~ 142 (275)
.+..+.++|..+. ....+..++|||++||-.++.++|..+|+ .||.|..+-|-+|.+-+.++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 1122223332221 22344568999999999999999999999 79999999999998889999
Q ss_pred eEEEEEECCHHHHHHHHhcCCceeC----CeEEEEEEee
Q psy1314 143 GFCFISFDDQNVAEQVLANPKQVIC----GKEVDVKRVK 177 (275)
Q Consensus 143 G~afV~f~~~e~a~~Ai~~~~~~~~----g~~i~v~~~~ 177 (275)
|-+-|+|.+..+-.+||.+--..|. .++|+|+.-.
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 9999999999999999988543333 3456665433
No 69
>KOG0130|consensus
Probab=99.48 E-value=1e-13 Score=101.60 Aligned_cols=84 Identities=23% Similarity=0.447 Sum_probs=79.3
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~ 178 (275)
...|||+++...+++++|.+.|..||+|+++.+-.|+-|+..+|||+|+|++.+.|++||..+| ..|.+.+|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999997 899999999999998
Q ss_pred CCCCC
Q psy1314 179 NPETM 183 (275)
Q Consensus 179 ~~~~~ 183 (275)
+.+..
T Consensus 152 ~gp~~ 156 (170)
T KOG0130|consen 152 KGPER 156 (170)
T ss_pred cCCcc
Confidence 86643
No 70
>KOG0113|consensus
Probab=99.47 E-value=2.4e-13 Score=112.23 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=75.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
++-++|||..|+.+++|..|+..|+.||+|+.|.|+.|+.|++++|||||+|+++.+..+|.+.. +.+|+++.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999887 68999999998765
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
.-+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 433
No 71
>KOG0107|consensus
Probab=99.47 E-value=1.2e-13 Score=105.80 Aligned_cols=77 Identities=30% Similarity=0.529 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~ 92 (275)
.-.++|||+||+.++++.||+.+|..||+|.+|+|-.++ .|||||+|++..+|+.|+..+ ++.|.+..|.|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 447899999999999999999999999999999998875 589999999999999999864 67899988888877
Q ss_pred ccc
Q psy1314 93 TKR 95 (275)
Q Consensus 93 ~~~ 95 (275)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 543
No 72
>KOG4212|consensus
Probab=99.45 E-value=1.4e-12 Score=112.75 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=63.5
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
|+|+|.|||+++||+.|++.|..+|.|..++|+. .++++| .|.|.++++|+.|+..++ ..|+|+.|+|..
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 8899999999999999999999999999999953 356665 899999999999999985 889999999975
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=8e-13 Score=88.77 Aligned_cols=70 Identities=33% Similarity=0.700 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDP 89 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v 89 (275)
+|+|.|||..+++++|+++|++||+|..+.+..++ +.++++|||+|.+.++|++|++.++ ..+.++++.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 6788999999999999999998754 7888887765
No 74
>KOG4207|consensus
Probab=99.45 E-value=2e-13 Score=107.18 Aligned_cols=84 Identities=29% Similarity=0.449 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~ 88 (275)
.++-+.-.+|.|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.||+.+ +.+++++.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 455677789999999999999999999999999999999999999999999999999999999999975 6789999988
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
|+.+.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 87664
No 75
>KOG0124|consensus
Probab=99.45 E-value=2.6e-12 Score=108.88 Aligned_cols=77 Identities=16% Similarity=0.445 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc-eecCeeecc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH-YIGNKKIDP 89 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~-~~~g~~i~v 89 (275)
...-++|||..+.++++|+||+..|+.||+|..|++-+.+.++..|||+||+|.+..+...|+..++. .+.|..++|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEec
Confidence 34567999999999999999999999999999999999998899999999999999988888886553 566655553
No 76
>KOG0111|consensus
Probab=99.44 E-value=1.2e-13 Score=109.30 Aligned_cols=85 Identities=26% Similarity=0.509 Sum_probs=79.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~ 176 (275)
..+++|||++|..++++..|...|-+||.|..|.++.|..+.+.|||+||+|...|+|.+||..|+ .+|.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
++....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876443
No 77
>KOG0120|consensus
Probab=99.44 E-value=1.2e-12 Score=117.36 Aligned_cols=167 Identities=20% Similarity=0.379 Sum_probs=125.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
......+.+||++||..+++.++.|+++.||++....++.+..++.++||||.+|.+......|+..+ +..+.++.+.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34466788999999999999999999999999999999999999999999999999999998888864 45666677766
Q ss_pred cccccccCC-------------------------CcceeeecCC--CCCC-CH-------HHHHHhcccCCCeEEEEecc
Q psy1314 90 KRVTKRVNP-------------------------LKCKIFVGGL--TTEI-SE-------QDVRDYFSQYGSITEFQQPF 134 (275)
Q Consensus 90 ~~~~~~~~~-------------------------~~~~l~V~~l--~~~~-~~-------~~l~~~F~~~G~v~~v~i~~ 134 (275)
+.+...... .+..|.+.|+ |.++ ++ ++++..+.+||.|..|.|++
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 654322110 0111222221 0111 11 45666778899999999987
Q ss_pred CC---CCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 135 DK---SKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 135 ~~---~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
+. ......|..||+|.+.+++++|++.| +.++.++.|....-.
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 72 22234667899999999999999999 589999998776543
No 78
>KOG1190|consensus
Probab=99.42 E-value=6.7e-12 Score=107.80 Aligned_cols=154 Identities=16% Similarity=0.245 Sum_probs=123.3
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccccc
Q psy1314 16 ERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVT 93 (275)
Q Consensus 16 ~~~l~v~~Lp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~ 93 (275)
+..|.|.||..+ +|++.|..+|..||.|..|+|+.++. -.|.|+|.+...|+-|++.+ ++++.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678999999766 79999999999999999999999864 37999999999999999864 779999999887764
Q ss_pred cccC------------------------------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCC
Q psy1314 94 KRVN------------------------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKS 137 (275)
Q Consensus 94 ~~~~------------------------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~ 137 (275)
.... +++.+|++.|+|.+++||+|+.+|.+-|-..+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 3210 12357999999999999999999998876554433222
Q ss_pred CCCeeeEEEEEECCHHHHHHHHhcC-CceeCCe-EEEEEEeee
Q psy1314 138 KNMKKGFCFISFDDQNVAEQVLANP-KQVICGK-EVDVKRVKF 178 (275)
Q Consensus 138 ~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~-~i~v~~~~~ 178 (275)
..+-++++.+++.|+|..|+..+ ++.+... .++|++.+.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 12458999999999999999887 5666654 788887763
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.5e-12 Score=106.09 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=70.1
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
..+|+|+||++.+|+++|+++|+.||+|.+|+|+.+.. .+++|||+|+++++|+.|+...+..|.+++|.|..+...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 46899999999999999999999999999999998853 457999999999999999988889999999999887644
No 80
>KOG0126|consensus
Probab=99.41 E-value=3.4e-14 Score=109.31 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
.++.-|||++||.++||.||.-.|++||+|++|.+++|+.||+|+||||+.|++..+...|+.. ++..|.++.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 5677899999999999999999999999999999999999999999999999999988888875 577999999999876
Q ss_pred ccc
Q psy1314 93 TKR 95 (275)
Q Consensus 93 ~~~ 95 (275)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 544
No 81
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.6e-12 Score=86.91 Aligned_cols=69 Identities=32% Similarity=0.642 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeecc
Q psy1314 21 VGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDP 89 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~v 89 (275)
|+|||..+++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|.+|++.++ ..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 67999999999999999999999999999988889999999999999999999998754 6778877765
No 82
>KOG0117|consensus
Probab=99.41 E-value=1.7e-12 Score=112.52 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=73.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee-CCeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI-CGKEVDVKR 175 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~-~g~~i~v~~ 175 (275)
...|.|||+.||.++.|++|..+|++.|+|-+++++.|+.++.+||||||+|.+.++|++||+.++ ++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 446899999999999999999999999999999999999999999999999999999999999984 544 578888876
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6554
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.4e-12 Score=86.46 Aligned_cols=70 Identities=30% Similarity=0.680 Sum_probs=64.2
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEE
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDV 173 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v 173 (275)
+|+|+|||..+++++|+++|++||.|..+.+..+. +.++++|||+|.+.++|++|++.++ ..+.+++|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988776 5678999999999999999999885 8899998876
No 84
>KOG1190|consensus
Probab=99.39 E-value=9.6e-13 Score=112.89 Aligned_cols=154 Identities=10% Similarity=0.112 Sum_probs=113.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecCee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGNKK 86 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g~~ 86 (275)
.....+++.|.++|||++++|+||.+++.+||+|+.+.++.-++ -|||+|+++++|...+... .-.+.+++
T Consensus 22 ~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~ 95 (492)
T KOG1190|consen 22 RSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQP 95 (492)
T ss_pred ccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcc
Confidence 34455889999999999999999999999999999999987654 7999999999888754421 22445555
Q ss_pred eccccccccc-----------------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCC
Q psy1314 87 IDPKRVTKRV-----------------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYG 125 (275)
Q Consensus 87 i~v~~~~~~~-----------------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G 125 (275)
|.++.+.... ...-.+++|.++-..++-+-|.++|++||
T Consensus 96 ~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG 175 (492)
T KOG1190|consen 96 IYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFG 175 (492)
T ss_pred eeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcc
Confidence 5544432110 01125678899999999999999999999
Q ss_pred CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 126 ~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
.|.+|.-.....+- -|+|+|.+.+.|..|...+ +..|..-.+.+
T Consensus 176 ~VlKIiTF~Knn~F----QALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 176 FVLKIITFTKNNGF----QALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred eeEEEEEEecccch----hhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 99887544332221 2899999999999998887 45554433333
No 85
>KOG0126|consensus
Probab=99.39 E-value=1e-13 Score=106.70 Aligned_cols=80 Identities=33% Similarity=0.538 Sum_probs=74.5
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~ 178 (275)
+.-|||++||+.+||.||--+|++||+|++|.+++|+.||+++||||+.|++..+..-|+..++ ..|.|+.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 4679999999999999999999999999999999999999999999999999999999999985 899999999987654
Q ss_pred C
Q psy1314 179 N 179 (275)
Q Consensus 179 ~ 179 (275)
.
T Consensus 115 Y 115 (219)
T KOG0126|consen 115 Y 115 (219)
T ss_pred c
Confidence 3
No 86
>KOG0130|consensus
Probab=99.39 E-value=1.2e-12 Score=96.06 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~ 91 (275)
+.+-..|||.++..++||++|.+.|..||+|++|.+..|+.|+-.+|||+|+|++.++|++|+..+ +..+.+..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 344557999999999999999999999999999999999999999999999999999999999975 5799999999999
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+..+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 865433
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.3e-12 Score=86.16 Aligned_cols=69 Identities=30% Similarity=0.625 Sum_probs=64.0
Q ss_pred ecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEE
Q psy1314 105 VGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDV 173 (275)
Q Consensus 105 V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v 173 (275)
|+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|.+|++.++ ..+.+++|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999888778899999999999999999999885 8889988876
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.2e-12 Score=114.86 Aligned_cols=77 Identities=21% Similarity=0.421 Sum_probs=70.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCH--HHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ--NVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~--e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
...+|||+||++.+++++|+.+|++||.|..|.|+ +.++ ||||||+|.+. +++.+||..++ ..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35789999999999999999999999999999999 4566 99999999987 78999999985 899999999999
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8765
No 89
>KOG0131|consensus
Probab=99.38 E-value=4.5e-13 Score=103.21 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=77.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~ 176 (275)
....+|||+||+..++++.|.++|-+.|+|.++.|++|+.+...+|||||+|.++|+|+-||+.++ ..|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456789999999999999999999999999999999999999999999999999999999999997 7899999999998
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 833
No 90
>KOG0120|consensus
Probab=99.38 E-value=9.9e-13 Score=117.96 Aligned_cols=161 Identities=24% Similarity=0.456 Sum_probs=133.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------CC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQY-----------GE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH 80 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~-----------G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~ 80 (275)
....+.++|++||+.++++.+..+|..- |+ +..+.+...+ .||||+|.+.++|..|+..+..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccch
Confidence 3456789999999999999999999865 33 6666666553 4999999999999999988777
Q ss_pred eecCeeecccccccc------------------------cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCC
Q psy1314 81 YIGNKKIDPKRVTKR------------------------VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDK 136 (275)
Q Consensus 81 ~~~g~~i~v~~~~~~------------------------~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~ 136 (275)
.+.+.++.+...... .....++++|++||..+++++++++.+.||++....++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 777766654332211 12234789999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 137 SKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 137 ~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
.++.++||||.+|.+......|+..++ ..+.++++.|..+...
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 999999999999999999999999986 7788899998877654
No 91
>KOG0114|consensus
Probab=99.38 E-value=3.2e-12 Score=89.50 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-Cceec
Q psy1314 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIG 83 (275)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~ 83 (275)
...+..-.++..+.|||+|||+++|.+++.++|.+||.|.+|+|=..+. .+|.|||.|++..+|++|+..+ +..+.
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccC
Confidence 3445555667788899999999999999999999999999999977655 4899999999999999999864 55777
Q ss_pred Ceeeccccccc
Q psy1314 84 NKKIDPKRVTK 94 (275)
Q Consensus 84 g~~i~v~~~~~ 94 (275)
++.+.|...++
T Consensus 84 ~ryl~vlyyq~ 94 (124)
T KOG0114|consen 84 NRYLVVLYYQP 94 (124)
T ss_pred CceEEEEecCH
Confidence 88877776643
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=2.2e-12 Score=113.19 Aligned_cols=79 Identities=20% Similarity=0.473 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccH--HHHHHHHHh-CCceecCeeec
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQ--KAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~--e~a~~al~~-~~~~~~g~~i~ 88 (275)
+.....+|||+||++++++++|+.+|..||.|.+|.|++ .|+ ||||||+|.+. +++.+||+. ++..+.|+.|.
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 345567899999999999999999999999999999994 466 89999999987 678899985 57799999999
Q ss_pred cccccc
Q psy1314 89 PKRVTK 94 (275)
Q Consensus 89 v~~~~~ 94 (275)
|..+.+
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 888754
No 93
>KOG1456|consensus
Probab=99.36 E-value=2.1e-10 Score=97.65 Aligned_cols=163 Identities=14% Similarity=0.161 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---Ccee
Q psy1314 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYI 82 (275)
Q Consensus 6 ~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~ 82 (275)
+.........+-.|.|++|-..++|.+|.+.++.||+|..+.++..+ .-|.|+|++.+.|++++... ...+
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i 94 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYI 94 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccc
Confidence 34444556778899999999999999999999999999888887653 37999999999999998752 3456
Q ss_pred cCeeeccccccccc--------CCCcceee--ecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 83 GNKKIDPKRVTKRV--------NPLKCKIF--VGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 83 ~g~~i~v~~~~~~~--------~~~~~~l~--V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
.+..-.+..+..+. ...+..|. |-|--..+|.+-|..+....|.|..|.|.+. ++ --|.|||++.
T Consensus 95 ~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv 169 (494)
T KOG1456|consen 95 AGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSV 169 (494)
T ss_pred cCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechh
Confidence 66655555443221 11223333 3455567899999999999999999988865 22 2499999999
Q ss_pred HHHHHHHhcCC-ceeCC--eEEEEEEeeeC
Q psy1314 153 NVAEQVLANPK-QVICG--KEVDVKRVKFN 179 (275)
Q Consensus 153 e~a~~Ai~~~~-~~~~g--~~i~v~~~~~~ 179 (275)
+.|++|.+.|+ ..|.. ..|+|..|++.
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCcc
Confidence 99999999985 55443 45566666544
No 94
>KOG0114|consensus
Probab=99.35 E-value=3.9e-12 Score=89.07 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=69.6
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
.++.|||.|||+++|.+++.++|.+||+|..|+|-..+.| +|.|||.|++..+|++|++.| ...++++.+.|....
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3577999999999999999999999999999999877654 899999999999999999998 588999999987665
Q ss_pred eC
Q psy1314 178 FN 179 (275)
Q Consensus 178 ~~ 179 (275)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 43
No 95
>KOG0108|consensus
Probab=99.35 E-value=2.8e-12 Score=114.39 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=75.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~~~ 95 (275)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.||+++||+|++|.+.++|+.|++.+ +.++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999976 57999999999988654
Q ss_pred c
Q psy1314 96 V 96 (275)
Q Consensus 96 ~ 96 (275)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.1e-11 Score=83.67 Aligned_cols=72 Identities=35% Similarity=0.655 Sum_probs=63.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc-eecCeeeccc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH-YIGNKKIDPK 90 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~-~~~g~~i~v~ 90 (275)
+|+|++||..+++++|+++|+.+|.|..+.+..++.+ .++++|||+|.+.++|..|++.+.. .+.++.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988655 7789999999999999999987544 5888877664
No 97
>KOG0116|consensus
Probab=99.33 E-value=1.2e-11 Score=109.82 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=70.0
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeCC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~~ 180 (275)
..|||.|||.++++++|+++|.+||+|+...|....-.+...+|+||+|.+.++++.||+.....|.+++|.|.......
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 55999999999999999999999999999888765433334499999999999999999999899999999998766554
Q ss_pred C
Q psy1314 181 E 181 (275)
Q Consensus 181 ~ 181 (275)
.
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 3
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.2e-11 Score=82.10 Aligned_cols=72 Identities=32% Similarity=0.673 Sum_probs=65.3
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEE
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVK 174 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~ 174 (275)
+|+|++||..+++++|+++|+.+|.|..+.+..+..+ .++++|||+|.+.++|..|++.++ ..+.++++.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987655 668999999999999999999985 66999999875
No 99
>KOG0415|consensus
Probab=99.28 E-value=6e-12 Score=106.24 Aligned_cols=84 Identities=23% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
....+.+.|||+.|.+-+|+++|.-+|+.||+|.+|.|+++..|+.+.-||||+|.+.++|++|.- +.+..|..+.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345778999999999999999999999999999999999999999999999999999999999965 4578999999999
Q ss_pred ccccc
Q psy1314 90 KRVTK 94 (275)
Q Consensus 90 ~~~~~ 94 (275)
..++.
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 88754
No 100
>KOG4210|consensus
Probab=99.28 E-value=9.6e-12 Score=106.07 Aligned_cols=170 Identities=23% Similarity=0.336 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc-eecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH-YIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~-~~~g~~i~v~~~~ 93 (275)
...++|++++..++.+.++..++...|.+..+.+........+++++.|.|+..+.+..+|.+... .+..+.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 588999999999999999999999999888888877667788999999999999999999998654 4444444333322
Q ss_pred ccc-----------CCCcceee-ecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 94 KRV-----------NPLKCKIF-VGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 94 ~~~-----------~~~~~~l~-V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
... .....+++ |.+|++.+++++|+.+|..++.|..++++.++.++..++|++|.|.+...+.+++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 221 11234455 999999999999999999999999999999999999999999999999999999887
Q ss_pred CCceeCCeEEEEEEeeeCCCCCC
Q psy1314 162 PKQVICGKEVDVKRVKFNPETMG 184 (275)
Q Consensus 162 ~~~~~~g~~i~v~~~~~~~~~~~ 184 (275)
....+.++++.+....+.+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPKSDG 269 (285)
T ss_pred ccCcccCcccccccCCCCccccc
Confidence 44778899999988887766543
No 101
>KOG0111|consensus
Probab=99.28 E-value=4.6e-12 Score=100.45 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~ 91 (275)
....++|||++|..++||.-|...|-+||.|.+|++..|-.+.+.|||+||+|...|+|.+||..+ ..++.|+.|+|..
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 456789999999999999999999999999999999999999999999999999999999999864 6699999999999
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+.+.+.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 876543
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=1.9e-11 Score=103.85 Aligned_cols=79 Identities=23% Similarity=0.582 Sum_probs=75.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~ 178 (275)
.++|||+|||..+++++|.++|.+||.|..+.+..++.++.++|+|||+|.+.++|..|++.++ ..|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999999899999999999999999999999996 999999999999653
No 103
>KOG0108|consensus
Probab=99.26 E-value=1.1e-11 Score=110.55 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=78.3
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
+.|||+|||+++++++|.++|+..|.|..++++.|+.|++++||+|++|.+.++|++|++.++ .++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999999999999999999999999999996 9999999999998877
Q ss_pred CCC
Q psy1314 180 PET 182 (275)
Q Consensus 180 ~~~ 182 (275)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 654
No 104
>KOG0128|consensus
Probab=99.24 E-value=3.7e-13 Score=124.86 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=126.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
.+..++||.||+..+.+.+|.+.|..++.+..+++...+.+++.+|+|||+|.+++++.+||......+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45567999999999999999999999998888888766778999999999999999999999986665555
Q ss_pred cccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEE
Q psy1314 94 KRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVD 172 (275)
Q Consensus 94 ~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~ 172 (275)
+..|+|.|+|+..|.++|+.++..+|.+..+.++..+ .++++|.++|.|.++.++.+++.+.. ..+.-..+.
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGE 808 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcc
Confidence 3579999999999999999999999999999877664 47899999999999999999988864 445555555
Q ss_pred EEEeee
Q psy1314 173 VKRVKF 178 (275)
Q Consensus 173 v~~~~~ 178 (275)
|....+
T Consensus 809 v~vsnp 814 (881)
T KOG0128|consen 809 VQVSNP 814 (881)
T ss_pred ccccCC
Confidence 555444
No 105
>KOG4205|consensus
Probab=99.24 E-value=1.4e-11 Score=105.47 Aligned_cols=114 Identities=33% Similarity=0.558 Sum_probs=95.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
...+|||+.||.++++++|+++|++||.|..+.++.|..+.+++||+||+|.+++++++++...-+.|.++.++|..+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCcceeeecC------CCCCCCHHHHHHhcccCCCeE
Q psy1314 95 RVNPLKCKIFVGG------LTTEISEQDVRDYFSQYGSIT 128 (275)
Q Consensus 95 ~~~~~~~~l~V~~------l~~~~~~~~l~~~F~~~G~v~ 128 (275)
+.......+.+.. +....+.-.|..+|..|+.+.
T Consensus 176 k~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 176 KEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred hhhccccccccccccccccccccccccccchhccccCccc
Confidence 8776655443333 333334445666676666543
No 106
>KOG0415|consensus
Probab=99.22 E-value=2e-11 Score=103.19 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=77.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
.++...|||.-|.+-++++||.-+|+.||.|..|.|++|..|+.+-.||||+|++.+++++|.-+| |..|++++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456688999999999999999999999999999999999999999999999999999999999888 7999999999988
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7644
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=5.7e-11 Score=80.14 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=53.0
Q ss_pred HHHHHHhcc----cCCCeEEEE-eccCCCC--CCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 114 EQDVRDYFS----QYGSITEFQ-QPFDKSK--NMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 114 ~~~l~~~F~----~~G~v~~v~-i~~~~~~--~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
+++|+++|+ +||.|.+|. |+.++.+ +.++|++||+|.+.++|.+|++.| +..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888998 999999995 7777666 889999999999999999999998 48899999876
No 108
>KOG0132|consensus
Probab=99.17 E-value=4.5e-11 Score=110.10 Aligned_cols=101 Identities=22% Similarity=0.393 Sum_probs=83.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeeccccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRVTK 94 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~~~ 94 (275)
++||||+.|+.+++|.||.++|+.||+|++|.++.. ++||||.+....+|++||.++ +..+..+.|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999876 579999999999999999875 6789999999999876
Q ss_pred ccCCC------cceeeecCCCCCCCHHHHHHhcc
Q psy1314 95 RVNPL------KCKIFVGGLTTEISEQDVRDYFS 122 (275)
Q Consensus 95 ~~~~~------~~~l~V~~l~~~~~~~~l~~~F~ 122 (275)
+-... ...|=|+-||+..-.++|+.+.+
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 54433 34455666787765555666654
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.5e-10 Score=78.14 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=52.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeeCCCC--CCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 30 EKEINDYFS----QYGEVESIS-IKNDPHT--GQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 30 ~~~l~~~f~----~~G~v~~~~-i~~~~~t--g~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
+++|+++|+ +||.|.+|. |+.++.+ ++++|++||+|.+.++|.+|++. ++..+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 6666666 89999999999999999999986 577899988765
No 110
>KOG0109|consensus
Probab=99.14 E-value=6e-11 Score=97.91 Aligned_cols=71 Identities=30% Similarity=0.567 Sum_probs=66.2
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
.+|||+|||.++++.+|+.+|++||.|.+|+|+++ |+||..++...|+.||..| +-.|+|..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999954 8999999999999999987 58899999999988877
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=2.1e-10 Score=73.76 Aligned_cols=55 Identities=20% Similarity=0.446 Sum_probs=48.3
Q ss_pred HHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 117 l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
|.++|++||+|..+.+..+. +++|||+|.+.++|++|++.+ +..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 579999999999999999987 58899999999875
No 112
>KOG4454|consensus
Probab=99.10 E-value=2.5e-11 Score=96.24 Aligned_cols=136 Identities=20% Similarity=0.335 Sum_probs=111.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
+..+..++|||.||...++|+-|.|+|-+-|+|..+.|...+ ..+.+ ||||.|+++-.+.-|++++ +..+.+.++.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 445678999999999999999999999999999999998775 45666 9999999999999999974 44555555544
Q ss_pred cccccccCCCcceeeecC----CCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 90 KRVTKRVNPLKCKIFVGG----LTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 90 ~~~~~~~~~~~~~l~V~~----l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
+ ++.++ |...++++.+...|+.-+++..+++.++.+ ++++.+.|+.+.-....-.++..
T Consensus 82 ~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 82 T------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred c------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 4 34444 777889999999999999999999998865 77888999988776666666554
No 113
>KOG1365|consensus
Probab=99.09 E-value=1.6e-10 Score=98.73 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=122.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
+++..|..+.|||..++.+|..+|.-.....-...+.....++-.|.+.|.|.++|.-+-|++.+.+.+..+.|+|-.+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 45566788899999999999999986543333333333345677899999999999999999998888888888876553
Q ss_pred ccc-----------------CCCcceeeecCCCCCCCHHHHHHhcccCC----CeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 94 KRV-----------------NPLKCKIFVGGLTTEISEQDVRDYFSQYG----SITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 94 ~~~-----------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G----~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
..+ +...-.|.+++||+++++.++.++|.+-- .++.|-+++. .+++..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 321 11234577899999999999999996432 3344444433 3577889999999999
Q ss_pred HHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 153 NVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 153 e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
++|+.||.++...|.-+.|++-++.
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999998777887777765443
No 114
>KOG0153|consensus
Probab=99.07 E-value=3.7e-10 Score=95.44 Aligned_cols=78 Identities=31% Similarity=0.501 Sum_probs=69.6
Q ss_pred ccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C-ceeCCeEEE
Q psy1314 95 RVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K-QVICGKEVD 172 (275)
Q Consensus 95 ~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~-~~~~g~~i~ 172 (275)
.++..-.+|||++|-..+++.+|+++|.+||+|..+.++.. +++|||+|.+.++|+.|.++. + ..|+|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34445688999999999999999999999999999998865 569999999999999999886 4 789999999
Q ss_pred EEEeee
Q psy1314 173 VKRVKF 178 (275)
Q Consensus 173 v~~~~~ 178 (275)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=7.8e-10 Score=71.12 Aligned_cols=55 Identities=25% Similarity=0.502 Sum_probs=47.9
Q ss_pred HHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 33 INDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 33 l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
|.++|++||+|+++.+..+. +++|||+|.+.++|++|++ +++..+.+++|.|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 5799999999999999998 4678999999998764
No 116
>KOG0226|consensus
Probab=99.05 E-value=1.2e-10 Score=94.43 Aligned_cols=166 Identities=17% Similarity=0.258 Sum_probs=126.4
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 14 NDERKLFVGGLHRNTGEKE-I--NDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~-l--~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
.....+++.++-.++..+- | ...|+.+-.+....++++. -+..++++|+.|.......++-.. ..+++.-.+|+.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4455677777766665544 3 5667777666666666663 356678999999887766666544 344555555554
Q ss_pred ccccccc-------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 90 KRVTKRV-------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 90 ~~~~~~~-------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
...+..+ ...+.+||.+.|..+++++.|...|.+|-.....++++|+-|++++||+||.|.+.+++..|+..|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 4433332 334689999999999999999999999999899999999999999999999999999999999998
Q ss_pred C-ceeCCeEEEEEEeeeCC
Q psy1314 163 K-QVICGKEVDVKRVKFNP 180 (275)
Q Consensus 163 ~-~~~~g~~i~v~~~~~~~ 180 (275)
+ ..++.+.|.+.....+.
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 5 88888998887766654
No 117
>KOG0153|consensus
Probab=99.05 E-value=8.8e-10 Score=93.19 Aligned_cols=81 Identities=33% Similarity=0.497 Sum_probs=71.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh--CCceecCe
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA--GDHYIGNK 85 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~--~~~~~~g~ 85 (275)
...++.....+|||++|-..++|.+|+++|.+||+|++|.++..+ ++|||+|.+.++|+.|.+. +...|+|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 445667778899999999999999999999999999999998874 5999999999999998875 35588999
Q ss_pred eeccccccc
Q psy1314 86 KIDPKRVTK 94 (275)
Q Consensus 86 ~i~v~~~~~ 94 (275)
+|.+.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999877
No 118
>KOG0112|consensus
Probab=98.97 E-value=3.3e-10 Score=106.04 Aligned_cols=161 Identities=19% Similarity=0.276 Sum_probs=124.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
.+.....+||++||+..+++.+|+..|..+|.|.+|.|.+-+. +.-.-|+||.|.+...+-.|...+ ...|..-.+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3445678999999999999999999999999999999977532 344458999999988777765543 33444334444
Q ss_pred cccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCC
Q psy1314 90 KRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICG 168 (275)
Q Consensus 90 ~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g 168 (275)
..... +......++|++|..++....|.+.|..||.|..|.+-.. .-|++|.|++...+++|++.+ ...|.+
T Consensus 446 glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 446 GLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCC
Confidence 43332 3445678999999999999999999999999999887533 348999999999999999987 355554
Q ss_pred --eEEEEEEeeeC
Q psy1314 169 --KEVDVKRVKFN 179 (275)
Q Consensus 169 --~~i~v~~~~~~ 179 (275)
+.+.|.++.+.
T Consensus 519 P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 519 PPRRLRVDLASPP 531 (975)
T ss_pred CCcccccccccCC
Confidence 56777776654
No 119
>KOG0132|consensus
Probab=98.95 E-value=1.4e-09 Score=100.36 Aligned_cols=73 Identities=22% Similarity=0.413 Sum_probs=68.1
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
++|||+.|+.+++++||+++|+.||+|..|.++. +++||||++....+|.+|+.+| +..+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 7899999999999999999999999999998864 4889999999999999999999 68999999999998766
No 120
>KOG4208|consensus
Probab=98.93 E-value=3.3e-09 Score=83.76 Aligned_cols=85 Identities=22% Similarity=0.398 Sum_probs=71.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCe
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQY-GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNK 85 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~-G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~ 85 (275)
...+.......++|..||.-+.+.+|..+|.++ |.|..+++-+++.||.|+|||||+|++++.|+-|-+.+ +-.|.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 445666777889999999999999999999998 77888899899999999999999999999999877754 4466666
Q ss_pred eeccccc
Q psy1314 86 KIDPKRV 92 (275)
Q Consensus 86 ~i~v~~~ 92 (275)
.|.+...
T Consensus 121 lL~c~vm 127 (214)
T KOG4208|consen 121 LLECHVM 127 (214)
T ss_pred eeeeEEe
Confidence 6555544
No 121
>KOG0146|consensus
Probab=98.93 E-value=1.7e-09 Score=88.49 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
.+..+-+.|||-.||.+..+.||.+.|-.||.|++.++..|+.|+.||.|+||.|.+..++++||..+ +-.|.=++++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999974 45677788888
Q ss_pred ccccccc
Q psy1314 90 KRVTKRV 96 (275)
Q Consensus 90 ~~~~~~~ 96 (275)
+...++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 7766554
No 122
>KOG4661|consensus
Probab=98.85 E-value=5.8e-09 Score=93.42 Aligned_cols=81 Identities=17% Similarity=0.406 Sum_probs=74.7
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
+.|||.+|+..+...+|+.+|++||.|+-.+|+++.-+.-.++|+||++.+.++|.++|+.|+ +.|.|+.|.|..++..
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 679999999999999999999999999999999987777789999999999999999999995 8999999999988766
Q ss_pred CC
Q psy1314 180 PE 181 (275)
Q Consensus 180 ~~ 181 (275)
+.
T Consensus 486 p~ 487 (940)
T KOG4661|consen 486 PG 487 (940)
T ss_pred cc
Confidence 54
No 123
>KOG4208|consensus
Probab=98.84 E-value=8.3e-09 Score=81.52 Aligned_cols=82 Identities=18% Similarity=0.429 Sum_probs=72.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccC-CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQY-GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
....-++|..+|.-+.+..|..+|.++ |.|..+++-+++.||.++|||||+|++++.|+-|-+.|| ..|.++-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344568999999999999999999988 788888888999999999999999999999999999985 788889999987
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7665
No 124
>KOG0116|consensus
Probab=98.81 E-value=1.1e-08 Score=90.96 Aligned_cols=79 Identities=25% Similarity=0.447 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
....+|||.|||+++++++|+++|..||+|+...|......++...|+||+|.+.++++.||++....+.++++.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 3445599999999999999999999999999887766432344448999999999999999999877777777666644
No 125
>KOG1456|consensus
Probab=98.81 E-value=1.4e-07 Score=80.70 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=114.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeecc
Q psy1314 12 GRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDP 89 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v 89 (275)
...+...++|-+|... +.-+.|..+|..||-|+.|++++.+ .|-|.|++.|..+.++|+..+ +..+.|.+|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3456778999999876 6889999999999999999999875 378999999999999999854 55667777766
Q ss_pred cccccc--------------------------------------cCCCcceeeecCCCCCCCHHHHHHhcccCCC-eEEE
Q psy1314 90 KRVTKR--------------------------------------VNPLKCKIFVGGLTTEISEQDVRDYFSQYGS-ITEF 130 (275)
Q Consensus 90 ~~~~~~--------------------------------------~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~-v~~v 130 (275)
..+.+. -..+++.|+.=|.|..+||+.|-++|..... ..+|
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 544322 1123467888899999999999999987653 4556
Q ss_pred EeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCc-eeCC
Q psy1314 131 QQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQ-VICG 168 (275)
Q Consensus 131 ~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~-~~~g 168 (275)
+|...+... .-.+++||++.++|..||.++++ .|.+
T Consensus 438 kvFp~kser--SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 438 KVFPLKSER--SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred Eeecccccc--cccceeeeehHHHHHHHHHHhccccccC
Confidence 665444222 23479999999999999999863 3443
No 126
>KOG4661|consensus
Probab=98.78 E-value=1.7e-08 Score=90.47 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~v~~~ 92 (275)
.-.+.|||.+|+..+...+|+.+|++||+|+-.+|+++..+.-.+.|+||++.+.++|.+||+.+ .+.+.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34567999999999999999999999999999999999888888999999999999999999964 66899999998876
Q ss_pred cc
Q psy1314 93 TK 94 (275)
Q Consensus 93 ~~ 94 (275)
..
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 127
>KOG4307|consensus
Probab=98.73 E-value=2.2e-08 Score=91.70 Aligned_cols=162 Identities=11% Similarity=0.081 Sum_probs=121.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
.+.+.+-+...++++++.+++++|... -|.+..|..+...+...|-++|+|....++.+|++.+...+-.+.+++..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 556677888999999999999999754 3666666666544444789999999999999999988877777777655432
Q ss_pred ccc----------------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE-EEe
Q psy1314 94 KRV----------------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE-FQQ 132 (275)
Q Consensus 94 ~~~----------------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~-v~i 132 (275)
... .....+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 110 012367999999999999999999998777777 444
Q ss_pred ccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 133 PFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 133 ~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
.. --+++.++.|||+|..++++.+|+.-. ++.+..+.|.|....
T Consensus 468 t~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 468 TR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cc-CCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 43 345677889999999988777776554 566667777776443
No 128
>KOG0533|consensus
Probab=98.70 E-value=5.3e-08 Score=80.50 Aligned_cols=83 Identities=16% Similarity=0.350 Sum_probs=73.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
....+|.|.|||..++++||+++|+.|+.++.+.+..++ .+.+.|.|-|.|...++|++|++.+ +..|+|+.+++..+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999999888775 5788999999999999999999998 58899999988877
Q ss_pred eeCCC
Q psy1314 177 KFNPE 181 (275)
Q Consensus 177 ~~~~~ 181 (275)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 129
>KOG2193|consensus
Probab=98.66 E-value=2.3e-09 Score=92.82 Aligned_cols=154 Identities=14% Similarity=0.234 Sum_probs=119.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC--ceecCeeeccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD--HYIGNKKIDPKRVTK 94 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~--~~~~g~~i~v~~~~~ 94 (275)
+.|||+||.+.++..+|+.+|...-.-.+-.++.. .||+||.+.+..+|.+|++.+. ..+.|+++++..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46899999999999999999976522112222221 3799999999999999999764 378899999988876
Q ss_pred ccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEec-cCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEE
Q psy1314 95 RVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQP-FDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVD 172 (275)
Q Consensus 95 ~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~-~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~ 172 (275)
++. .++++-|.|+|+...|+.|..++..||.+..|.++ .+.++- ..-|+|.+.+.++.||.+++ ..+....++
T Consensus 76 kkq-rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 76 KKQ-RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred HHH-HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 644 44669999999999999999999999999998765 232221 23468889999999999984 777777777
Q ss_pred EEEeeeCCC
Q psy1314 173 VKRVKFNPE 181 (275)
Q Consensus 173 v~~~~~~~~ 181 (275)
+........
T Consensus 151 ~~YiPdeq~ 159 (584)
T KOG2193|consen 151 VGYIPDEQN 159 (584)
T ss_pred cccCchhhh
Confidence 776655443
No 130
>KOG4209|consensus
Probab=98.66 E-value=1.2e-07 Score=78.48 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=76.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
.....+||+|+.+.++.++++.+|+.||.|..+.|+.|+.++.+++|+||+|.+.+.+++|+......|.++.++|....
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 34578999999999999999999999999999999999999999999999999999999999955699999999999888
Q ss_pred eCC
Q psy1314 178 FNP 180 (275)
Q Consensus 178 ~~~ 180 (275)
.+.
T Consensus 179 ~~~ 181 (231)
T KOG4209|consen 179 TNV 181 (231)
T ss_pred eec
Confidence 773
No 131
>KOG4676|consensus
Probab=98.66 E-value=2.1e-08 Score=86.17 Aligned_cols=146 Identities=11% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC---CCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT---GQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t---g~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
...|.|.||++.+|.++++.+|...|+|.++.|..+... ....-.|||.|.+...+..|..+.+.++-+..|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 348999999999999999999999999999999875432 33456899999999999888887777766665554332
Q ss_pred ccccC---------------------------------------------------------CCcceeeecCCCCCCCHH
Q psy1314 93 TKRVN---------------------------------------------------------PLKCKIFVGGLTTEISEQ 115 (275)
Q Consensus 93 ~~~~~---------------------------------------------------------~~~~~l~V~~l~~~~~~~ 115 (275)
..... ....+|+|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 11100 011568999999999999
Q ss_pred HHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCce
Q psy1314 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQV 165 (275)
Q Consensus 116 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~ 165 (275)
++.+.|+.+|+|....+.... ..-+|-|+|........|+..++..
T Consensus 167 e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre 212 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRE 212 (479)
T ss_pred hhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchh
Confidence 999999999998877665332 2346779999888888888876533
No 132
>KOG4206|consensus
Probab=98.65 E-value=8.1e-08 Score=77.16 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=70.9
Q ss_pred CcceeeecCCCCCCCHHHHHH----hcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRD----YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~----~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
++.+|||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|+..+ +.-+.|+++.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999998764 3567899999999999999999998 57899999999
Q ss_pred EEeeeCCCC
Q psy1314 174 KRVKFNPET 182 (275)
Q Consensus 174 ~~~~~~~~~ 182 (275)
..|+.+.+.
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 998877553
No 133
>KOG4209|consensus
Probab=98.64 E-value=3.6e-08 Score=81.58 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
....+...|||+|+...+|.+++..+|+.||.|..+.|..++.++.+++|+||+|.+.+.+++++.++...|.++.+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44567889999999999999999999999999999999999999999999999999999999999988899999988887
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
+...
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 7643
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=2.4e-07 Score=65.81 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
+||.|+|||...|.++|.+++... |...-+.+..|..+..+.|||||.|.++++|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 689999999999999999999764 6677788999988999999999999999999998886
No 135
>KOG0226|consensus
Probab=98.61 E-value=6e-08 Score=78.96 Aligned_cols=85 Identities=19% Similarity=0.448 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
...++..+||.+.|..+++++.|...|.+|-.....++++++.|++++||+||.|.+.+++..|+.. +++.++.++|..
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 3456678999999999999999999999998888899999999999999999999999999999985 567888888877
Q ss_pred cccccc
Q psy1314 90 KRVTKR 95 (275)
Q Consensus 90 ~~~~~~ 95 (275)
..+..+
T Consensus 265 RkS~wk 270 (290)
T KOG0226|consen 265 RKSEWK 270 (290)
T ss_pred hhhhHH
Confidence 766543
No 136
>KOG0533|consensus
Probab=98.57 E-value=2.4e-07 Score=76.60 Aligned_cols=81 Identities=16% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
...+.+|.|.|||..++++||+|+|++|++++.+.|..++ ++++.|.|-|.|...++|++|++. ++..++++++.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999998884 699999999999999999999986 46688888877766
Q ss_pred ccc
Q psy1314 92 VTK 94 (275)
Q Consensus 92 ~~~ 94 (275)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 137
>KOG4307|consensus
Probab=98.55 E-value=2.4e-07 Score=85.08 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=64.0
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
.|.+.|+|++++.+||.++|..|-.+....+++..+.+...|-|.|.|++.++|.+|.+.+ ++.|..++|.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5889999999999999999999977665555555677899999999999999999999998 4888888888764
No 138
>KOG4660|consensus
Probab=98.55 E-value=1.1e-07 Score=85.41 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=98.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~ 88 (275)
.+......+|+|-|||..+++++|+++|+.||+|..|+.... .++.+||+|-|..+|++|++.+ ...+.++.|.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344567889999999999999999999999999999766554 3689999999999999999875 4567776665
Q ss_pred cccccccc-----------------------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEE
Q psy1314 89 PKRVTKRV-----------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFC 145 (275)
Q Consensus 89 v~~~~~~~-----------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~a 145 (275)
......+. ......+++ .|++..+..-++..|+-++.+.. +. +..-+---
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~ 216 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQR 216 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhh
Confidence 22211110 001122332 37777777666666666676554 21 11112235
Q ss_pred EEEECCHHHHHHHHhcCCceeCCeE
Q psy1314 146 FISFDDQNVAEQVLANPKQVICGKE 170 (275)
Q Consensus 146 fV~f~~~e~a~~Ai~~~~~~~~g~~ 170 (275)
|++|.+..++..+...++..+.+..
T Consensus 217 ~~~~~~~~s~a~~~~~~G~~~s~~~ 241 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRGGFLISNSS 241 (549)
T ss_pred hhhhccccchhhcccCCceecCCCC
Confidence 7888888887555443334444444
No 139
>KOG0106|consensus
Probab=98.54 E-value=1e-07 Score=77.16 Aligned_cols=72 Identities=25% Similarity=0.586 Sum_probs=62.5
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
.+|||++||+.+.+.+|..+|..||.|.++.+. .+|+||+|++..+|..||..++ ..|++.++.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999988764 5689999999999999999985 7788888777766654
Q ss_pred C
Q psy1314 180 P 180 (275)
Q Consensus 180 ~ 180 (275)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 140
>KOG1995|consensus
Probab=98.47 E-value=5.8e-07 Score=76.89 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=76.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE--------EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
.....+|||.+||..+++++|.++|.+++.|.. |.|.++++|+.+|+-|.|+|++...|++||+.. ...++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999988754 678889999999999999999999999999998 58899
Q ss_pred CeEEEEEEeeeCCCC
Q psy1314 168 GKEVDVKRVKFNPET 182 (275)
Q Consensus 168 g~~i~v~~~~~~~~~ 182 (275)
+..|+|..|+.++..
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999888753
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.35 E-value=2.4e-06 Score=60.70 Aligned_cols=77 Identities=12% Similarity=0.255 Sum_probs=62.3
Q ss_pred ceeeecCCCCCCCHHHHHHhcccC--CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC----CeEEEE
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQY--GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC----GKEVDV 173 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~----g~~i~v 173 (275)
++|.|+|||...|.++|.+++... |....+-++.|-.+..+.|||||.|.+++.|.+..+.. +..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999999988753 67888889999889999999999999999999888775 33332 345566
Q ss_pred EEee
Q psy1314 174 KRVK 177 (275)
Q Consensus 174 ~~~~ 177 (275)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 142
>KOG4454|consensus
Probab=98.34 E-value=2.5e-07 Score=73.86 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=66.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~ 176 (275)
+..++|||.|+...++++-|.++|-+-|+|..|.|+.+++.. .+ ||||.|+++-.+.-|++.++ ..+.+.++.+..-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~-~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQE-QK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCC-Cc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 346789999999999999999999999999999999887654 45 99999999999999999985 7788877776543
No 143
>KOG1457|consensus
Probab=98.32 E-value=4.7e-06 Score=66.85 Aligned_cols=85 Identities=15% Similarity=0.297 Sum_probs=64.8
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEecc-CCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeC---CeEEEEE
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPF-DKSKNMKKGFCFISFDDQNVAEQVLANPK-QVIC---GKEVDVK 174 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~-~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~---g~~i~v~ 174 (275)
-++|||.+||.++...+|..+|..|--.+.+.+.. ++....-+-++||+|.+..+|.+|+..++ ..++ +..|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 48899999999999999999999986655554432 22222335689999999999999999985 4443 5678888
Q ss_pred EeeeCCCCCC
Q psy1314 175 RVKFNPETMG 184 (275)
Q Consensus 175 ~~~~~~~~~~ 184 (275)
.++..+.+..
T Consensus 114 lAKSNtK~kr 123 (284)
T KOG1457|consen 114 LAKSNTKRKR 123 (284)
T ss_pred ehhcCccccc
Confidence 8877665543
No 144
>KOG0128|consensus
Probab=98.31 E-value=6.3e-08 Score=90.72 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred CCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 16 ERKLFVGGLHRNTGEK-EINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~-~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
...+.+.++.+...+. .++..|..++.|+.|.+......-...-+.++.+....+++.|+......+..+.+.+..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3456777887776555 677888899999999987633322222388899999999999998877778777777666554
Q ss_pred ccCC-----------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC
Q psy1314 95 RVNP-----------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 95 ~~~~-----------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~ 163 (275)
+... ..+++||+||+..+.+++|+..|..++.+..+.|....++++.+|+|+++|..++++.+||....
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 4322 12678999999999999999999999999888887777788899999999999999999998865
Q ss_pred ceeCC
Q psy1314 164 QVICG 168 (275)
Q Consensus 164 ~~~~g 168 (275)
..+.+
T Consensus 731 ~~~~g 735 (881)
T KOG0128|consen 731 SCFFG 735 (881)
T ss_pred hhhhh
Confidence 44444
No 145
>KOG1548|consensus
Probab=98.30 E-value=1.7e-06 Score=73.53 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=70.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEE--------EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCe
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGK 169 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~ 169 (275)
.+..|||+|||.++|.+++.++|+++|.|.. |++.++.. |..+|=|+|.|-..|+++-|++.|+ ..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3467999999999999999999999998754 67777654 8889999999999999999999996 789999
Q ss_pred EEEEEEeeeC
Q psy1314 170 EVDVKRVKFN 179 (275)
Q Consensus 170 ~i~v~~~~~~ 179 (275)
.|+|.+|+..
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999988754
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.23 E-value=1e-06 Score=64.02 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=43.5
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC------ceeCCeEEEEE
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK------QVICGKEVDVK 174 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~------~~~~g~~i~v~ 174 (275)
+.|+|.+++..++.++|+++|++|+.|..|.+..... .|+|.|.+.+.|++|++++. ..|.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999886533 58999999999999988742 34666666655
Q ss_pred Eee
Q psy1314 175 RVK 177 (275)
Q Consensus 175 ~~~ 177 (275)
...
T Consensus 76 vLe 78 (105)
T PF08777_consen 76 VLE 78 (105)
T ss_dssp ---
T ss_pred ECC
Confidence 443
No 147
>KOG1995|consensus
Probab=98.22 E-value=2.4e-06 Score=73.12 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CC
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--------SISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GD 79 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~ 79 (275)
...+.....+|||-.||..+++++|.++|.+++.|. .|.|-+++.|+++|+-|.|+|.+...|++|+.. ..
T Consensus 59 ~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 59 SMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 344567788999999999999999999999998775 477888999999999999999999999999986 46
Q ss_pred ceecCeeeccccccccc
Q psy1314 80 HYIGNKKIDPKRVTKRV 96 (275)
Q Consensus 80 ~~~~g~~i~v~~~~~~~ 96 (275)
+.+.+..|.|..+..+.
T Consensus 139 kdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccCCCchhhhhhhcc
Confidence 78888888888776543
No 148
>KOG4660|consensus
Probab=98.19 E-value=7.5e-07 Score=80.10 Aligned_cols=71 Identities=27% Similarity=0.442 Sum_probs=61.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVD 172 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~ 172 (275)
+....+|+|-|||..+++++|.++|+.||+|+.|+- +-..++.+||+|-|..+|++|++.++ ..+.++.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445688999999999999999999999999998653 33458899999999999999999985 778888877
No 149
>KOG0151|consensus
Probab=98.12 E-value=4e-06 Score=77.43 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=71.2
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCC---CCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDK---SKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
....|||+||++.+++++|-..|..||+|..|+|+.-+ +..+.+-|+||.|.+..+|++|++.| +..+...++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 45789999999999999999999999999999988543 33455779999999999999999998 588889999998
Q ss_pred EeeeCCC
Q psy1314 175 RVKFNPE 181 (275)
Q Consensus 175 ~~~~~~~ 181 (275)
|.+.-+-
T Consensus 253 Wgk~V~i 259 (877)
T KOG0151|consen 253 WGKAVPI 259 (877)
T ss_pred ccccccc
Confidence 8865543
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.02 E-value=8.9e-06 Score=55.31 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=45.4
Q ss_pred ceeeecCCCCCCCHHH----HHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 101 CKIFVGGLTTEISEQD----VRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~----l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
..|+|.|||.+.+... |++++..+| .|..|. .+.|+|.|.+.+.|++|.+.| +..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3589999999988755 557777776 565552 346999999999999999998 689999999998
Q ss_pred Eeee
Q psy1314 175 RVKF 178 (275)
Q Consensus 175 ~~~~ 178 (275)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.97 E-value=2.1e-05 Score=49.61 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHH
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLL 75 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al 75 (275)
+.|-|.+.+.+..+ +|..+|.+||+|.++.+.... -..+|+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56888899877765 455589999999998887433 28999999999999985
No 152
>KOG0151|consensus
Probab=97.97 E-value=2.9e-05 Score=71.91 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC---CCCcccEEEEEEccHHHHHHHHHhC-CceecCeeec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPH---TGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i~ 88 (275)
....+.|||+||++.+++++|...|..||+|.+++|++-+. ..+.+-|+||.|-+..+|++|++.+ +..+....+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34566799999999999999999999999999999987542 2345679999999999999999875 5577777777
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 77663
No 153
>KOG4849|consensus
Probab=97.95 E-value=2e-05 Score=67.25 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=65.5
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCC--CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVK 174 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~ 174 (275)
...++||+||-|++|++||.+.+...| .+.++++..++.++++||||+|...+..++++.++.+. +.|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357899999999999999999988776 56777888889999999999999999999999999984 78888765554
No 154
>KOG4210|consensus
Probab=97.91 E-value=1e-05 Score=69.27 Aligned_cols=86 Identities=23% Similarity=0.432 Sum_probs=73.8
Q ss_pred CCCCCCCeEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 11 PGRNDERKLF-VGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~-v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
.......+++ |.+|+.++++++|.++|..++.|..+++..++.++.++|++||.|.+...+..++....+.+.++++.+
T Consensus 179 ~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 179 LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRL 258 (285)
T ss_pred cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccccc
Confidence 3344555666 999999999999999999999999999999999999999999999999999998887456788888888
Q ss_pred ccccccc
Q psy1314 90 KRVTKRV 96 (275)
Q Consensus 90 ~~~~~~~ 96 (275)
.......
T Consensus 259 ~~~~~~~ 265 (285)
T KOG4210|consen 259 EEDEPRP 265 (285)
T ss_pred ccCCCCc
Confidence 7776553
No 155
>KOG0129|consensus
Probab=97.89 E-value=4e-05 Score=68.68 Aligned_cols=67 Identities=30% Similarity=0.448 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
..-++.+||||+.||.-++.++|..+|+ .||.|..+-|-+|++-+-++|-+-|+|.+..+-.+||++
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4457889999999999999999999999 699999999999988899999999999999999999987
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=3.8e-05 Score=55.80 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=36.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
..|.|.+++..++.++|++.|++|++|..|.+...-. .|||.|.++++|++|++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHH
Confidence 3688999999999999999999999999998877532 799999999999999886
No 157
>KOG4849|consensus
Probab=97.84 E-value=1.8e-05 Score=67.56 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC-ceecCeeec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~--v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~-~~~~g~~i~ 88 (275)
+....++||+||-|.+|++||.+.+...|. +.++++..++.+++|||||+|...+..+.++.++.+. +.|.|....
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344567999999999999999999988775 7788888898999999999999999999999998764 466665433
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.74 E-value=0.00015 Score=49.44 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhhcC-CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 17 RKLFVGGLHRNTGEKEIN----DYFSQYG-EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~----~~f~~~G-~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
..|+|.|||.+.+...|+ +++..+| +|.+|. .+.|.|.|.+++.|++|++. .+..+.|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999887655 5555675 576552 24799999999999999885 5778888888888
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 7643
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00013 Score=45.97 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=41.2
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHH
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai 159 (275)
+.|.|.+.+....+ ++..+|.+||+|..+.+... .-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 35778888877665 45558889999999987622 337999999999999985
No 160
>KOG0921|consensus
Probab=97.62 E-value=0.00033 Score=67.15 Aligned_cols=6 Identities=17% Similarity=-0.114 Sum_probs=2.3
Q ss_pred cccCCc
Q psy1314 264 YREAAY 269 (275)
Q Consensus 264 ~~~~~~ 269 (275)
.++++|
T Consensus 1274 ~~Gg~~ 1279 (1282)
T KOG0921|consen 1274 GRGGNA 1279 (1282)
T ss_pred Cccccc
Confidence 333343
No 161
>KOG1855|consensus
Probab=97.57 E-value=7.1e-05 Score=65.62 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccC---CCCC--C--------eeeEEEEEECCHHHHHHHHhcCC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFD---KSKN--M--------KKGFCFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~---~~~~--~--------~~G~afV~f~~~e~a~~Ai~~~~ 163 (275)
+...++|.+.|||.+-.-+.|.++|..+|.|..|+|+.- ..+. . .+-+|+|+|+..+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346788999999999999999999999999999999865 2221 1 14579999999999999999874
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00042 Score=49.62 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeeCC------CCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESIS-IKNDP------HTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~-i~~~~------~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
..++.|.|=+.|+. ....|.++|++||.|.+.. +.++. ..........|+|.++.+|.+||+.++..+.+.-
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45566888899888 5667888999999987764 11100 0011234899999999999999999999998854
Q ss_pred ec-cccc
Q psy1314 87 ID-PKRV 92 (275)
Q Consensus 87 i~-v~~~ 92 (275)
+- |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 43 4443
No 163
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.51 E-value=0.00055 Score=46.62 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=41.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
-.+..+|. +|.++...||.++|+.||.| .|..+.|. .|||...+.+.|..++..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 34445555 99999999999999999988 67777763 799999999999988875
No 164
>KOG1855|consensus
Probab=97.27 E-value=0.00042 Score=60.93 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeC---CCCCC----------cccEEEEEEccHHHHHHHHHhCC
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKND---PHTGQ----------SRGFAFVTFTTQKAVDDLLAAGD 79 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~---~~tg~----------~~G~afV~f~~~e~a~~al~~~~ 79 (275)
+-++++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.+.+ .+-+|+|+|...+.|++|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999988999999999999999999865 33221 25679999999999999998753
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0034 Score=45.00 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=50.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCC-------CCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEE-
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKS-------KNMKKGFCFISFDDQNVAEQVLANPKQVICGKEV- 171 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~-------~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i- 171 (275)
++-|.|=+.|+. ....|-++|++||+|.+..-..... ......+-.|+|+++.+|.+||.+++..|.|.-+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 455778888888 4567778999999998775111100 0112458899999999999999999998988544
Q ss_pred EEEEe
Q psy1314 172 DVKRV 176 (275)
Q Consensus 172 ~v~~~ 176 (275)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45554
No 166
>KOG2314|consensus
Probab=97.10 E-value=0.0013 Score=59.86 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC
Q psy1314 14 NDERKLFVGGLHRNTG------EKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t------~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~ 78 (275)
.-...|+|-|+|.--. +.-|..+|+++|+|..+.+..+..++ ++||.|++|++..+|+.|++.+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhc
Confidence 4567899999986432 23466789999999999999887655 9999999999999999999873
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.05 E-value=0.0016 Score=55.59 Aligned_cols=79 Identities=18% Similarity=0.450 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHH------HHHHHhhcCCeeEEEEeeCCCC-CCcccEE--EEEEccHHHHHHHHHh-CCceecC
Q psy1314 15 DERKLFVGGLHRNTGEKE------INDYFSQYGEVESISIKNDPHT-GQSRGFA--FVTFTTQKAVDDLLAA-GDHYIGN 84 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~------l~~~f~~~G~v~~~~i~~~~~t-g~~~G~a--fV~f~~~e~a~~al~~-~~~~~~g 84 (275)
..+-|||-+||+.+..++ -.++|.+||+|..|.|.+...+ ....+++ ||+|.+.|+|.+||.. .+..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999998876666 2479999999998888654322 2223344 9999999999999987 4678889
Q ss_pred eeecccccc
Q psy1314 85 KKIDPKRVT 93 (275)
Q Consensus 85 ~~i~v~~~~ 93 (275)
+.|....-.
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 988876654
No 168
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0038 Score=40.35 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=43.6
Q ss_pred cceeeecCCCCCCCHHHHHHhcccC---CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQY---GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
..+|+|.++. +++.++|+.+|..| .....|+++-|. .|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 47888999999988 134577777663 3899999999999999864
No 169
>KOG2314|consensus
Probab=96.94 E-value=0.0025 Score=58.01 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=57.8
Q ss_pred CcceeeecCCCCCCC------HHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeC-CeE
Q psy1314 99 LKCKIFVGGLTTEIS------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVIC-GKE 170 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~-g~~ 170 (275)
....|.|.|+|.--. ..-|.++|+++|+|..+.++.+..++ .+|+.|++|.+..+|+.|++.++ +.|+ ...
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 456788999885421 23466899999999999999887766 79999999999999999999974 4433 344
Q ss_pred EEEE
Q psy1314 171 VDVK 174 (275)
Q Consensus 171 i~v~ 174 (275)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4444
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.93 E-value=0.0032 Score=53.91 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=59.5
Q ss_pred ceeeecCCCCCCCHHH----H--HHhcccCCCeEEEEeccCCCCCC-eeeE--EEEEECCHHHHHHHHhcC-CceeCCeE
Q psy1314 101 CKIFVGGLTTEISEQD----V--RDYFSQYGSITEFQQPFDKSKNM-KKGF--CFISFDDQNVAEQVLANP-KQVICGKE 170 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~----l--~~~F~~~G~v~~v~i~~~~~~~~-~~G~--afV~f~~~e~a~~Ai~~~-~~~~~g~~ 170 (275)
.-+||-+||+.+..++ | .++|.+||.|..|.|-+...+.. ..+. .+|+|.+.|+|.+||... ...++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5589999999886665 3 37899999999988765432111 1222 399999999999999997 48899999
Q ss_pred EEEEEeeeC
Q psy1314 171 VDVKRVKFN 179 (275)
Q Consensus 171 i~v~~~~~~ 179 (275)
|+...-..+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 988766554
No 171
>KOG4676|consensus
Probab=96.83 E-value=0.0017 Score=56.50 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=63.5
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCC---CCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKS---KNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
..|.|.||.++++.++++.+|...|.|.++.+..... -....-.|||.|.+...+..|....++++-++.|.|...-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3689999999999999999999999999998875221 1223457999999999999998888888888887776554
Q ss_pred eC
Q psy1314 178 FN 179 (275)
Q Consensus 178 ~~ 179 (275)
..
T Consensus 88 ~~ 89 (479)
T KOG4676|consen 88 DE 89 (479)
T ss_pred CC
Confidence 33
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.78 E-value=0.0053 Score=46.74 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=52.0
Q ss_pred CCCCeEEEcCCC-----C-CCCH---HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecC
Q psy1314 14 NDERKLFVGGLH-----R-NTGE---KEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGN 84 (275)
Q Consensus 14 ~~~~~l~v~~Lp-----~-~~t~---~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g 84 (275)
++..||.|.=+. . ..++ .+|.+.|..||++.=++++.+ .-.|+|.+-+.|-+|+++++..+.+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 445566666544 1 1222 367788889999888888765 4789999999999999999999999
Q ss_pred eeeccccccc
Q psy1314 85 KKIDPKRVTK 94 (275)
Q Consensus 85 ~~i~v~~~~~ 94 (275)
+.|.++...+
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9998886653
No 173
>KOG0115|consensus
Probab=96.74 E-value=0.0019 Score=53.22 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=74.0
Q ss_pred CCceecCeeecccccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHH
Q psy1314 78 GDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQ 157 (275)
Q Consensus 78 ~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~ 157 (275)
.+....++.+.|..+.. ..|+|.||..-++.+.|.+.|+.||+|....++.|. .++..+-++|+|...-.|.+
T Consensus 15 d~~~~~~~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~ 87 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARK 87 (275)
T ss_pred CCCCCCCCceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHH
Confidence 46677888898888853 579999999999999999999999999887666663 46677889999999988888
Q ss_pred HHhcCC-----ceeCCeEEEEEEeeeC
Q psy1314 158 VLANPK-----QVICGKEVDVKRVKFN 179 (275)
Q Consensus 158 Ai~~~~-----~~~~g~~i~v~~~~~~ 179 (275)
|+.... ....++++.|......
T Consensus 88 a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 88 AARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred HHHHhccCccccCCCCCccCCChhhcc
Confidence 887752 3445566666554443
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.70 E-value=0.016 Score=37.53 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
...|+|.++ .+++.++|+.+|..| .....|..+.|. .|=|.|.+.+.|.+||.+
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 457999998 458889999999998 235589999884 588999999999999975
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.56 E-value=0.013 Score=44.63 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=45.0
Q ss_pred HHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 116 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
+|-+.|..||++.-++++-+ .-.|+|.+-++|.+|+.+.+.+++|+.|+|+...+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 66678889999998888754 269999999999999999999999999999766543
No 176
>KOG2202|consensus
Probab=96.49 E-value=0.001 Score=54.89 Aligned_cols=61 Identities=15% Similarity=0.396 Sum_probs=46.5
Q ss_pred HHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 31 KEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 31 ~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
++|...|+ +||+|+++.|..+. --..+|-+||.|..+|+|++|++. ++.++.+++|..+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444454 78999999776653 345678899999999999999986 466888888766654
No 177
>KOG3152|consensus
Probab=96.47 E-value=0.0022 Score=52.84 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=56.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC--------CCccc----EEEEEEccHHHHHHHHHh-CCce
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT--------GQSRG----FAFVTFTTQKAVDDLLAA-GDHY 81 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t--------g~~~G----~afV~f~~~e~a~~al~~-~~~~ 81 (275)
..-.||+++||+.+...-|+++|++||+|-.|.+-.+..+ +.++. -+.|+|.+...|.++..+ ++..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999999876555 22222 367999999999887665 4566
Q ss_pred ecCee
Q psy1314 82 IGNKK 86 (275)
Q Consensus 82 ~~g~~ 86 (275)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 76654
No 178
>KOG2135|consensus
Probab=96.31 E-value=0.0026 Score=56.81 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNT-GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~-t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~ 91 (275)
..+.+.|-+--+|..+ |.++|..+|.+||+|..|.+-.... .|.|+|.+..+|-.|.......|+++.|.+.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEE
Confidence 4456667777777776 6799999999999999999976633 79999999999988888888899999999999
Q ss_pred ccccc
Q psy1314 92 VTKRV 96 (275)
Q Consensus 92 ~~~~~ 96 (275)
.....
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87643
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.26 E-value=0.0089 Score=41.62 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=44.8
Q ss_pred EEEEEccHHHHHHHHHhCCc--eecCeeecccccccc----------cCCCcceeeecCCCCCCCHHHHHHhcc
Q psy1314 61 AFVTFTTQKAVDDLLAAGDH--YIGNKKIDPKRVTKR----------VNPLKCKIFVGGLTTEISEQDVRDYFS 122 (275)
Q Consensus 61 afV~f~~~e~a~~al~~~~~--~~~g~~i~v~~~~~~----------~~~~~~~l~V~~l~~~~~~~~l~~~F~ 122 (275)
|.|+|.+++-|++.+++-.+ .+....+.|....-. .....++|.|++||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999987543 555555544332211 123457899999999999999988765
No 180
>KOG0115|consensus
Probab=96.11 E-value=0.0063 Score=50.26 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=54.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~ 78 (275)
..|+|.||+.-++-+.|.+.|+.||+|+...++.| ..++..+-.+|+|...-.|.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 67999999999999999999999999998888777 55788889999999998888888764
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.10 E-value=0.033 Score=42.06 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 13 RNDERKLFVGGLHRNT----GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~----t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
..+-.+|.|.=|..++ +...|...++.||+|+++.+.-. -.|.|.|.+..+|=+|+.+......+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3455678887766665 33456667788999999998754 279999999999999999877777777777
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 77654
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.08 E-value=0.042 Score=37.58 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
+...+|+ +|..+...||.++|+.||.|.-.. +.| ..|||...+.+.|..|+..+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsW-i~d-------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSW-IND-------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEE-ECT-------TEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEE-EcC-------CcEEEEeecHHHHHHHHHHh
Confidence 3455665 999999999999999999875444 333 14999999999998887764
No 183
>KOG2591|consensus
Probab=95.96 E-value=0.022 Score=52.05 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=55.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcc--cCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFS--QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDV 173 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~--~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v 173 (275)
..|.|.|+-||..+-.|+++.||. .+-.+++|++-.+.. =||+|++.+||+.|.+.+. +.|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 457788899999999999999997 467888888765432 5999999999999987762 5678887643
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.81 E-value=0.1 Score=38.09 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
...+.+.-.|..++.++|..+.+.+-+ |..++|+++.. .++=.+.++|.+.++|++..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH
Confidence 444455555555666778777777654 88899998743 2444799999999999999886
No 185
>KOG1996|consensus
Probab=95.69 E-value=0.032 Score=47.06 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=47.7
Q ss_pred HHHHHHhcccCCCeEEEEeccCCCCCCee-eEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEe
Q psy1314 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKK-GFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRV 176 (275)
Q Consensus 114 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~-G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~ 176 (275)
++++++..++||.|..|.|..+...-... --.||+|...++|.+|+-.++ ..+.|+.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46788889999999998887654332211 237999999999999998885 7788888776553
No 186
>KOG3152|consensus
Probab=95.52 E-value=0.0047 Score=50.97 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=56.8
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCC--------CCeee----EEEEEECCHHHHHHHHhcCC-ce
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSK--------NMKKG----FCFISFDDQNVAEQVLANPK-QV 165 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~--------~~~~G----~afV~f~~~e~a~~Ai~~~~-~~ 165 (275)
..-.||+++||+.++..-|+++|+.||.|-.|-+.....+ +.+.. -+-|+|.+...|+.+.+.|| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999988765444 11111 25789999999999888874 66
Q ss_pred eCCeE
Q psy1314 166 ICGKE 170 (275)
Q Consensus 166 ~~g~~ 170 (275)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77654
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.52 E-value=0.083 Score=39.96 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCCcceeeecCCCCCC-CHHHHH---HhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEE
Q psy1314 97 NPLKCKIFVGGLTTEI-SEQDVR---DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVD 172 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~-~~~~l~---~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~ 172 (275)
+.+-.+|.|.=|..++ ..+||+ ..++.||+|..|...- +-.|.|.|.+..+|.+|+........|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3445677777666665 334555 4556899999998752 4469999999999999999987777888888
Q ss_pred EEEee
Q psy1314 173 VKRVK 177 (275)
Q Consensus 173 v~~~~ 177 (275)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87754
No 188
>KOG2202|consensus
Probab=95.35 E-value=0.0056 Score=50.58 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=48.4
Q ss_pred HHHHHhcc-cCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 115 QDVRDYFS-QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 115 ~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
++|...|+ +||+|+++.|..+. ...-+|-++|.|..+|+|++|++.++ ..+.|++|...+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 34444444 89999998766442 23347789999999999999999984 8899999988766544
No 189
>KOG1996|consensus
Probab=95.24 E-value=0.07 Score=45.08 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCeeEEEEeeCCCCCCcc-cEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 30 EKEINDYFSQYGEVESISIKNDPHTGQSR-GFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 30 ~~~l~~~f~~~G~v~~~~i~~~~~tg~~~-G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
++++.+.+++||.|..|.|...+...... =-.||+|...++|.+|+-. ++..|.|+.+..-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46788899999999999988775433322 1379999999999988764 57788888765443
No 190
>KOG2591|consensus
Probab=95.16 E-value=0.055 Score=49.57 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecCeee
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQ--YGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGNKKI 87 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~--~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g~~i 87 (275)
....+.|.|+-||..+.+|+|+.+|+. +-++++|.+-.+- -=||+|++.+||+.|.+.+ -+.|.+++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 444566888899999999999999974 6789999987763 3699999999999987754 457888877
Q ss_pred ccc
Q psy1314 88 DPK 90 (275)
Q Consensus 88 ~v~ 90 (275)
..+
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 543
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.88 E-value=0.042 Score=43.77 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEeeC-CCCCC-cccEEEEEEccHHHHHHHHHhC-Ccee
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQ-YGEV---ESISIKND-PHTGQ-SRGFAFVTFTTQKAVDDLLAAG-DHYI 82 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~-~G~v---~~~~i~~~-~~tg~-~~G~afV~f~~~e~a~~al~~~-~~~~ 82 (275)
..+..+|.|++||+.+|++++.+.++. ++.. ..+.-... ..... ..--|||.|.+.+++....... ++.|
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 455679999999999999999997776 5554 23331111 11111 2235999999999988888763 4343
No 192
>KOG2193|consensus
Probab=94.82 E-value=0.016 Score=51.18 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=57.8
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC--ceeCCeEEEEEEeee
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK--QVICGKEVDVKRVKF 178 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~--~~~~g~~i~v~~~~~ 178 (275)
.+||++||.+.++..+|..+|...-.-..-.++. ..||+||...+..-|.+|++.++ ..+.|+++++....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541111111111 25799999999999999999984 789999999987776
Q ss_pred CCC
Q psy1314 179 NPE 181 (275)
Q Consensus 179 ~~~ 181 (275)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 644
No 193
>KOG2416|consensus
Probab=94.45 E-value=0.024 Score=52.19 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQ-YGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
.+....++.|+|.||-.-.|.-+|++++.+ .|.|++.+|-+- |-+|||.|.+.++|.+...+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHH
Confidence 345677899999999999999999999985 566777744322 34899999999999888776
No 194
>KOG0112|consensus
Probab=94.39 E-value=0.075 Score=51.39 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=60.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecC--eeec
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGN--KKID 88 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g--~~i~ 88 (275)
.....+.|||++|..++....|...|..||.|..|.+-.-. -|++|.+.+...++.|+..+ +..|.+ +++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 44567889999999999999999999999999998886542 29999999999999998754 445544 4455
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
|..+.
T Consensus 525 vdla~ 529 (975)
T KOG0112|consen 525 VDLAS 529 (975)
T ss_pred ccccc
Confidence 55543
No 195
>KOG0804|consensus
Probab=94.31 E-value=0.17 Score=45.27 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG 83 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~ 83 (275)
....|+|--+|..+|-.||..|...+-+ |.+|+|++|..-. +=.+.|+|.+.++|..+.+. +++.|+
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3888999999999999999999987654 9999999975432 33689999999999999886 343443
No 196
>KOG2135|consensus
Probab=94.25 E-value=0.034 Score=49.92 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=59.0
Q ss_pred ceeeecCCCCCC-CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEI-SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~-~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
+.|-+.-+|+.. +.++|..+|.+||+|..|.|-.. .-.|.|+|.+..+|-+|-......|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 445555555555 66899999999999999987543 22489999999999888877788999999999998874
Q ss_pred C
Q psy1314 180 P 180 (275)
Q Consensus 180 ~ 180 (275)
+
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 197
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.92 E-value=0.099 Score=40.35 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=77.8
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccc
Q psy1314 19 LFVGGL-H-RNTGEKEINDYFSQ-YGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 19 l~v~~L-p-~~~t~~~l~~~f~~-~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~ 95 (275)
..|+.+ . .+.+-+.|.+.+.+ ++....+.+..- ..++..+.|.++++++++++.....+.+..+.++...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 444444 3 34677778877765 344334444332 135899999999999999998777888888887777644
Q ss_pred cCCCc-------ceeeecCCCCC-CCHHHHHHhcccCCCeEEEEeccC
Q psy1314 96 VNPLK-------CKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFD 135 (275)
Q Consensus 96 ~~~~~-------~~l~V~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~ 135 (275)
..... .=|.|.+||.. .+++-|+.+.+.+|++..++....
T Consensus 93 ~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 33221 22667899988 488889999999999998876543
No 198
>KOG2416|consensus
Probab=93.91 E-value=0.053 Score=50.06 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=55.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcc-cCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ce---eCCeEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFS-QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QV---ICGKEV 171 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~---~~g~~i 171 (275)
...++.|+|.||--.+|.-+|+.++. ..|.|... +.|+. +-.|||.|.+.++|.+.+..|+ .. -+.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34568899999999999999999999 55666666 33432 4469999999999998888873 32 345666
Q ss_pred EEEEee
Q psy1314 172 DVKRVK 177 (275)
Q Consensus 172 ~v~~~~ 177 (275)
.+.+..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 666554
No 199
>KOG4285|consensus
Probab=93.88 E-value=0.32 Score=41.36 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=50.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee-cccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI-DPKR 91 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i-~v~~ 91 (275)
.=|-|=++|+... .-|..+|++||+|.+...-.+ -.+-+|.|.+.-+|++||..++..|++..+ -|+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3455557776544 456788999999877666533 238899999999999999999998888544 3444
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.88 E-value=1.2 Score=37.86 Aligned_cols=149 Identities=11% Similarity=0.186 Sum_probs=93.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC-------CCCcccEEEEEEccHHHHHHHHH-------hC
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPH-------TGQSRGFAFVTFTTQKAVDDLLA-------AG 78 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-------tg~~~G~afV~f~~~e~a~~al~-------~~ 78 (275)
+=..+.|.+.||..+++-..+...|.+||+|++|.++.+.. .....-.+.+.|-+.+.|-.... ..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999999998751 12234578999999888766532 12
Q ss_pred CceecCeeeccccccc---------c------------------cCCCcceeeecCCCCCC-CHHHHHHhc---ccCC--
Q psy1314 79 DHYIGNKKIDPKRVTK---------R------------------VNPLKCKIFVGGLTTEI-SEQDVRDYF---SQYG-- 125 (275)
Q Consensus 79 ~~~~~g~~i~v~~~~~---------~------------------~~~~~~~l~V~~l~~~~-~~~~l~~~F---~~~G-- 125 (275)
.+.+....+.+....- . .....+.|.|. +...+ .++-|.+.+ ..-+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 3344444444333221 0 01123556664 23344 333333322 1112
Q ss_pred --CeEEEEeccC--CCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 126 --SITEFQQPFD--KSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 126 --~v~~v~i~~~--~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
.++.|.|+.. +...-++-||.++|-+...|...++-+
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYl 211 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYL 211 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHH
Confidence 3556666633 233456789999999999988887764
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.09 E-value=0.19 Score=40.08 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=39.5
Q ss_pred CcceeeecCCCCCCCHHHHHHhccc-CCCe---EEEE--eccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQ-YGSI---TEFQ--QPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~-~G~v---~~v~--i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
...+|.|++||+.+|++++.+.++. ++.. ..+. +.........-.-|+|.|.+.+++...+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 4568999999999999999987776 5544 2333 1111111111234899999999998888876
No 202
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.27 E-value=2.1 Score=41.33 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHhcccCCCe-----EEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 109 TTEISEQDVRDYFSQYGSI-----TEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 109 ~~~~~~~~l~~~F~~~G~v-----~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
...++..+|..++..-+.| -.|+|.. .|.||+... +.|...+..+ +..+.+++|.|..+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 3556777777777654433 3355542 267888754 3466677777 57899999999887543
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.53 E-value=1 Score=36.11 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=42.6
Q ss_pred CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEEEEeeeC
Q psy1314 113 SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDVKRVKFN 179 (275)
Q Consensus 113 ~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v~~~~~~ 179 (275)
..+.|+++|..+..+..+.+++. -.-..|.|.+.++|.+|...+. ..+.+..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45889999999998877766643 2238999999999999999875 6799999999888544
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.18 E-value=2.5 Score=30.88 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=43.1
Q ss_pred eeecCCCCCCCHHHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC
Q psy1314 103 IFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 103 l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~ 163 (275)
+.+-..|..++-++|..+.+.+- .|..++|++|.. .++=.++++|.+.++|++-.+..|
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhC
Confidence 33444566667777877777664 577788888754 346689999999999999988753
No 205
>KOG4285|consensus
Probab=90.05 E-value=1.3 Score=37.86 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=50.6
Q ss_pred eeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeE-EEEEEeeeCCC
Q psy1314 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKE-VDVKRVKFNPE 181 (275)
Q Consensus 103 l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~-i~v~~~~~~~~ 181 (275)
|.|=++|+. .-..|-.+|++||+|.+..... .-.+-+|.|.++.+|+|||.+....|++.. |-|+...++..
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 444455544 3356789999999987765431 234889999999999999999888887754 44555455433
No 206
>KOG2068|consensus
Probab=89.92 E-value=0.2 Score=43.32 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeeCCCCC-C--cccEEEEEEccHHHHHHHHHhC-CceecCee
Q psy1314 14 NDERKLFVGGLHRNTGEKEIN---DYFSQYGEVESISIKNDPHTG-Q--SRGFAFVTFTTQKAVDDLLAAG-DHYIGNKK 86 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~tg-~--~~G~afV~f~~~e~a~~al~~~-~~~~~g~~ 86 (275)
-..+-+||-+|+..+..+.+. +.|.+||.|..|.+..++.+- . .--.++|+|...|+|..||..- +..+.++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345678899999887555544 478888999999988876311 1 1123899999999999999863 44666666
Q ss_pred ecccccc
Q psy1314 87 IDPKRVT 93 (275)
Q Consensus 87 i~v~~~~ 93 (275)
++.....
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 5544443
No 207
>KOG2068|consensus
Probab=89.56 E-value=0.1 Score=45.01 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=53.4
Q ss_pred ceeeecCCCCCCCH-HHHH--HhcccCCCeEEEEeccCCC--CC-CeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 101 CKIFVGGLTTEISE-QDVR--DYFSQYGSITEFQQPFDKS--KN-MKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 101 ~~l~V~~l~~~~~~-~~l~--~~F~~~G~v~~v~i~~~~~--~~-~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
..+||-+|+..+.. ..|+ +.|.+||.|..|.+..+.. .. ....-++|+|...|+|..||... +..++++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888877644 4444 6788899999998877652 11 11223799999999999999876 35566666555
Q ss_pred EEeeeC
Q psy1314 174 KRVKFN 179 (275)
Q Consensus 174 ~~~~~~ 179 (275)
.....+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 444433
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.53 E-value=2.7 Score=28.18 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 26 RNTGEKEINDYFSQYGE-----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~G~-----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
..++..+|..++..... |-.|.|..+ |+||+-... .|+.+++. .+..+.++++.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788999999987643 557888765 899988665 45666665 567899998887653
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.85 E-value=2.3 Score=34.16 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC---ceecCeeecccccc
Q psy1314 28 TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD---HYIGNKKIDPKRVT 93 (275)
Q Consensus 28 ~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~---~~~~g~~i~v~~~~ 93 (275)
...+.|+++|..++.+.++.++..- +-..|.|.+.++|.+|...+. ..+.+..+.+-...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3568999999999998888887652 368899999999999988754 57888887776553
No 210
>KOG4410|consensus
Probab=87.85 E-value=2.9 Score=35.48 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeeCCCCCCcccEEEEEEccH-------HHHHHHHHh
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPHTGQSRGFAFVTFTTQ-------KAVDDLLAA 77 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~tg~~~G~afV~f~~~-------e~a~~al~~ 77 (275)
.+......|+++|||.++.-.||+..+.+.+.+ .+|.+.- ..|-||+.|.+. +++++++..
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s 393 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKS 393 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhcc
Confidence 334445669999999999999999999887643 2333322 356899999653 455555543
No 211
>KOG4574|consensus
Probab=87.69 E-value=0.31 Score=47.03 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=61.1
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C--ceeCCeEEEEEEeee
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K--QVICGKEVDVKRVKF 178 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~--~~~~g~~i~v~~~~~ 178 (275)
+..+.|.+-..+-..|..+|.+||.|...+.+++- -.|.|+|.+.+.|..|++.+ + ..+.|.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34555666667788899999999999999887763 36999999999999999987 3 457788889999887
Q ss_pred CCCCC
Q psy1314 179 NPETM 183 (275)
Q Consensus 179 ~~~~~ 183 (275)
.+--.
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 76543
No 212
>KOG4483|consensus
Probab=87.52 E-value=1.9 Score=38.32 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCe
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNK 85 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~ 85 (275)
.+=.+.|-|-++|.....+||...|+.|+. --+|.++.+. ++|-.|.+...|..||.+...++.-+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEee
Confidence 344678999999999999999999999965 4467777664 79999999999999998633344333
No 213
>KOG2253|consensus
Probab=86.48 E-value=0.37 Score=45.23 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
.....++||+++...+..+-++.+...+|.|..+.... |+|++|..+.....|+..+. ..+++..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567899999999999999999999999988776542 89999999999999988874 567777766544
No 214
>KOG2253|consensus
Probab=86.10 E-value=0.64 Score=43.75 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc-eecCeeec
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH-YIGNKKID 88 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~-~~~g~~i~ 88 (275)
....+..+|||+||...+..+-+..++..+|-|.++..+. |+|..|........|+..+.. .+++..+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 3446678999999999999999999999999987776654 899999999888887775433 44454443
No 215
>KOG4574|consensus
Probab=84.47 E-value=0.38 Score=46.48 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=46.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~ 78 (275)
+..+-|.+..++-..|..+|++||.|.+++.+++-. .|.|+|.+.|.|..|+.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDAL 354 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhh
Confidence 344555666778888999999999999999988854 8999999999999999873
No 216
>KOG2318|consensus
Probab=83.88 E-value=3.3 Score=38.60 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 13 RNDERKLFVGGLHRN-TGEKEINDYFSQY----GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~----G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
....++|-|.|+.|+ +...+|.-+|+.| |.|.+|.|.... |-...-++. .+.|.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeRM~eE-------eV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKERMKEE-------EVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHHhhhh-------cccCChh
Confidence 466789999999998 7889999999988 578888887652 222221111 2334333
Q ss_pred cccccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-Ccee
Q psy1314 88 DPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVI 166 (275)
Q Consensus 88 ~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~ 166 (275)
.+........... ..+..-++-.+..+.+|+ +..+.. =||.|+|.+.+.|.+.-+.. +..+
T Consensus 232 el~~~~e~~~~s~-------sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 232 ELFKPVEEYKESE-------SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhccccccCcccc-------cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecCchHHHHHHHhcCccee
Confidence 3322211111110 111111122344444443 222221 27999999999999998887 4555
Q ss_pred CC
Q psy1314 167 CG 168 (275)
Q Consensus 167 ~g 168 (275)
..
T Consensus 294 Es 295 (650)
T KOG2318|consen 294 ES 295 (650)
T ss_pred cc
Confidence 54
No 217
>KOG4213|consensus
Probab=83.85 E-value=0.86 Score=35.89 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT-GQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t-g~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
.++++.. |.+...++|.++-+ +++..+.+.+.... -..+|..||+|.+.+.|.++++.......-..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~e 178 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETE 178 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchH
Confidence 3455555 33334444555444 78888888664221 25789999999999999998876544444333
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.26 E-value=4.6 Score=26.99 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHhcccCC-----CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 109 TTEISEQDVRDYFSQYG-----SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 109 ~~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
-..++..+|..++.... .|-.|+|..+ |+||+-... .|++++..+ +..+.|+++.|..|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34577888888887653 4566777533 789888654 566677776 47899999999865
No 219
>KOG0804|consensus
Probab=79.72 E-value=5.4 Score=36.15 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=52.0
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~ 163 (275)
...|+|-.+|..++-.||-.|...+- .|..++|++|..- .+=..+|+|.+.++|....+..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcC
Confidence 67889999999999999999998764 6888999986543 35568999999999999988863
No 220
>KOG3875|consensus
Probab=79.66 E-value=5.7 Score=34.26 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.3
Q ss_pred CccCCC
Q psy1314 268 AYTRHA 273 (275)
Q Consensus 268 ~~~~~~ 273 (275)
||++..
T Consensus 92 GyN~~~ 97 (362)
T KOG3875|consen 92 GYNRFG 97 (362)
T ss_pred cccccc
Confidence 333333
No 221
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.38 E-value=4.3 Score=26.80 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccc
Q psy1314 31 KEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 31 ~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~ 95 (275)
++|.+.|...|- |..+.-+..+.++...-.-||+.+...+..+++.. +.+.+..+.|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCCC
Confidence 578888888874 88888888877777778899998877654444332 3467777888776543
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.48 E-value=8 Score=33.11 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=61.4
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCC-------CCCCeeeEEEEEECCHHHHHH----HHh---cCCce
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDK-------SKNMKKGFCFISFDDQNVAEQ----VLA---NPKQV 165 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~-------~~~~~~G~afV~f~~~e~a~~----Ai~---~~~~~ 165 (275)
.+.|...||..+++-..+...|.+||+|+.|-++.+. +.........+.|-+.+.|.. .++ +.++.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999998765 112234568999999988753 233 33577
Q ss_pred eCCeEEEEEEeeeC
Q psy1314 166 ICGKEVDVKRVKFN 179 (275)
Q Consensus 166 ~~g~~i~v~~~~~~ 179 (275)
|....+.+.+...+
T Consensus 95 L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 95 LKSESLTLSFVSLN 108 (309)
T ss_pred cCCcceeEEEEEEe
Confidence 88888888887753
No 223
>KOG2891|consensus
Probab=75.48 E-value=5.9 Score=33.55 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=28.1
Q ss_pred cceeeecCCCCC------------CCHHHHHHhcccCCCeEEEEecc
Q psy1314 100 KCKIFVGGLTTE------------ISEQDVRDYFSQYGSITEFQQPF 134 (275)
Q Consensus 100 ~~~l~V~~l~~~------------~~~~~l~~~F~~~G~v~~v~i~~ 134 (275)
..+|++.+||-. .+++.|+..|+.||+|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 367888888743 35788999999999999998874
No 224
>KOG4410|consensus
Probab=74.46 E-value=6.8 Score=33.32 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=34.5
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
.-|+|+||+.++...||+..+.+.+.+. +.|... -+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeee----cCCcceeEecCCc
Confidence 4599999999999999999998876432 222221 1366799999774
No 225
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.99 E-value=5.5 Score=26.29 Aligned_cols=63 Identities=11% Similarity=0.400 Sum_probs=42.2
Q ss_pred HHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 115 QDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 115 ~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
++|++.|...| +|.++.-+..+.+..+--.-||+.+...+..+++.. ..|++..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCCC
Confidence 45667777666 788887777766666667788888776553333221 5688888888766543
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.76 E-value=18 Score=25.03 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
-|+=.++.++++.+|++.++. |+. |.+|..+..+. ..--|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 444456789999999999998 664 77777766542 223699999988888776544
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.69 E-value=4.5 Score=26.68 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccc
Q psy1314 31 KEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 31 ~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~ 95 (275)
++|++.|.+.|- +..+.-+.++.++.....-||+.....+-...++ -+.+.++++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~--ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILN--IKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEe--ehhhCCeeEEEecCccc
Confidence 578888998885 8889888888877777788888876543333222 23567777888776543
No 228
>KOG4483|consensus
Probab=71.50 E-value=7.6 Score=34.65 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.7
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCe-EEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCce
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSI-TEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQV 165 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~ 165 (275)
..+.|-|-++|.....+||-.+|+.|+.- -+|.++-| -.+|-.|.+...|..||...+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh~~ 450 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKHDW 450 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccCce
Confidence 44778999999999999999999998642 23444433 25999999999999999874333
No 229
>KOG4213|consensus
Probab=70.19 E-value=8.7 Score=30.42 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=35.7
Q ss_pred ceeeecCCCCCCCHHHHHHhcc-cCCCeEEEEeccCCCC-CCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFS-QYGSITEFQQPFDKSK-NMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
++++.. .|+++|.++.+ .-+.+.+|......+. -..+|-.||+|.+.+.|.+.++..
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 455554 34444444433 1167777765543322 135788999999999999887764
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.49 E-value=30 Score=22.63 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-CceecCeee
Q psy1314 27 NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYIGNKKI 87 (275)
Q Consensus 27 ~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~~g~~i 87 (275)
.++-++|+..+.+|.- .+|+.++ | | -||.|.+.++|+++.... ...+....+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 4788999999999853 2333443 2 3 489999999999999874 445544443
No 231
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.53 E-value=32 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=36.5
Q ss_pred CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEE
Q psy1314 111 EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEV 171 (275)
Q Consensus 111 ~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i 171 (275)
.++-++|+..+..|.- .. |..| .+| =||.|.+.++|+++....+ ..+....+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 4678899999999853 33 3333 233 4899999999999998863 44444443
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=67.49 E-value=33 Score=23.24 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~ 76 (275)
.-|+=.++.++++.+|++.++. |+. |.+|..+.-+. ..--|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3455567889999999999987 564 77777665542 22359999988777766543
No 233
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.88 E-value=6.8 Score=25.86 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 115 QDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 115 ~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
++|++.|+..| ++..+.-+..+.+..+--+=+|+.....+-.. .++ +.|++.+|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35777777777 78888888777766666777888776543333 223 5688999988766543
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.85 E-value=8.9 Score=28.26 Aligned_cols=57 Identities=12% Similarity=0.276 Sum_probs=30.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccH-HHHHHHHHh
Q psy1314 18 KLFVGGLHRN---------TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQ-KAVDDLLAA 77 (275)
Q Consensus 18 ~l~v~~Lp~~---------~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~-e~a~~al~~ 77 (275)
++.|-|++.+ ++-++|.+.|+.|.+++ ++.+.++. -..|++.|+|.+. .--..|+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 4667777544 35688999999998875 55555533 4678999999753 444455543
No 235
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=65.66 E-value=2.8 Score=37.32 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=52.9
Q ss_pred CCCCCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 13 RNDERKLFVGGLHRNTGEK--------EINDYFSQ--YGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~--------~l~~~f~~--~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
....+.+|+.++..+.+.+ ++...|.. ++++..|.+.++-....++|..|++|...+.+++++..
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 3445678888887765544 89999998 67888899988876788999999999999999999863
No 236
>KOG3424|consensus
Probab=65.01 E-value=26 Score=25.76 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhhc-CC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQY-GE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~-G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
.+++++||+|-+.+. -. |.-..+...-..+++.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 457899999988774 22 333334444456789999977 7777776654
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.75 E-value=23 Score=22.82 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=16.6
Q ss_pred HHHHHHHHhhcCCeeEEEEee
Q psy1314 30 EKEINDYFSQYGEVESISIKN 50 (275)
Q Consensus 30 ~~~l~~~f~~~G~v~~~~i~~ 50 (275)
.++|+++|++.|+|.-+.+..
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 368999999999987665543
No 238
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.05 E-value=22 Score=24.82 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=24.2
Q ss_pred EEEEECCHHHHHHHHhcCC--ceeCCeEEEEEE
Q psy1314 145 CFISFDDQNVAEQVLANPK--QVICGKEVDVKR 175 (275)
Q Consensus 145 afV~f~~~e~a~~Ai~~~~--~~~~g~~i~v~~ 175 (275)
|+|+|.+++.|++.+++.. ..+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999998863 567776666543
No 239
>KOG4008|consensus
Probab=58.87 E-value=9.6 Score=31.55 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISI 48 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i 48 (275)
....+..+||+-|||..+|++.|.++.+.+|.++.+.+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45567889999999999999999999999986655444
No 240
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.44 E-value=13 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.522 Sum_probs=22.0
Q ss_pred CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECC
Q psy1314 113 SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD 151 (275)
Q Consensus 113 ~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~ 151 (275)
+.+.|++.|+.|.+++ ++.+.+.. -..|+++|+|..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECC
Confidence 5578999999998765 44444433 468999999976
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.74 E-value=13 Score=32.38 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=31.3
Q ss_pred EEEEEccHHHHHHHHHhCCceecCeeecccccccccCCCcceeeecCCCCCCCHHHHHHhc
Q psy1314 61 AFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYF 121 (275)
Q Consensus 61 afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F 121 (275)
|||+|+++++|+.|++.....- ...+.++.+.++. -|.=.||..+..+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-~~~~~v~~APeP~-----DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-PNSWRVSPAPEPD-----DIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-CCCceEeeCCCcc-----cccccccCCChHHHHHHHHH
Confidence 7999999999999998532211 2333454443322 23345665555554444443
No 242
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=56.19 E-value=36 Score=24.28 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeeCCC----CCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGEVESISIKNDPH----TGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~v~~~~i~~~~~----tg~~~G~afV~f~~~e~a~~a 74 (275)
.+.+..+|++.+.+ ++.-.+..++..-. .+++.|||.| |.+.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35688899988865 55433444443323 3567888877 7777766554
No 243
>PF14893 PNMA: PNMA
Probab=53.41 E-value=14 Score=32.58 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQ 39 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~ 39 (275)
+..+.|.|.+||.++++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45678999999999999999998764
No 244
>KOG3262|consensus
Probab=52.87 E-value=43 Score=26.71 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=13.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQ 132 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i 132 (275)
.-.+.-||+.|- ++|-++=|-||+|.++.+
T Consensus 77 PyfNAPIylenk------~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 77 PYFNAPIYLENK------EQIGKVDEIFGPINDVHF 106 (215)
T ss_pred CCCCCceeecch------hhhcchhhhcccccccEE
Confidence 334455666553 223222233555555443
No 245
>KOG4019|consensus
Probab=51.47 E-value=12 Score=29.74 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=46.7
Q ss_pred ceeeecCCCCCC-----CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCe-EEEE
Q psy1314 101 CKIFVGGLTTEI-----SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGK-EVDV 173 (275)
Q Consensus 101 ~~l~V~~l~~~~-----~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~-~i~v 173 (275)
..+.+.+|+..+ .......+|.++-+.....+++ +.+...|.|.+++.|..|..++ ...|.++ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 345566666554 2233445666555544444442 2445778999999999998887 4778887 7777
Q ss_pred EEeeeC
Q psy1314 174 KRVKFN 179 (275)
Q Consensus 174 ~~~~~~ 179 (275)
.++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 776654
No 246
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=49.03 E-value=31 Score=27.63 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=55.0
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccccCCCcceeeecCCCCC-----C---CH
Q psy1314 43 VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTE-----I---SE 114 (275)
Q Consensus 43 v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~-----~---~~ 114 (275)
+.-+.+++++ +.|.+.|+|.+.|+..++.+....|.+....+..+....+|||.-+.-. + ..
T Consensus 37 l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~VNE~TkkIYICPFTGKVF~DNt~~nPQ 106 (238)
T PF10915_consen 37 LQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSVNEQTKKIYICPFTGKVFGDNTHPNPQ 106 (238)
T ss_pred CCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcccccccceEEEcCCcCccccCCCCCChH
Confidence 4456666664 5799999999999998888888889988888888888888888644322 1 34
Q ss_pred HHHHHhcccCC
Q psy1314 115 QDVRDYFSQYG 125 (275)
Q Consensus 115 ~~l~~~F~~~G 125 (275)
+.|.+..+++-
T Consensus 107 DAIYDWvSkCP 117 (238)
T PF10915_consen 107 DAIYDWVSKCP 117 (238)
T ss_pred HHHHHHHhhCC
Confidence 66778777764
No 247
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=45.17 E-value=2.2e+02 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeeC
Q psy1314 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQY----GEVESISIKND 51 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~----G~v~~~~i~~~ 51 (275)
.+..+..+|-|-||.|+ +...+|.-.|+.| |++..|.|...
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34567788999999998 7889999999887 56777777654
No 248
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.01 E-value=18 Score=20.52 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhhcC
Q psy1314 26 RNTGEKEINDYFSQYG 41 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~G 41 (275)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998764
No 249
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=42.58 E-value=68 Score=24.18 Aligned_cols=48 Identities=15% Similarity=0.358 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhh-cC-CeeEEEEeeCCC----CCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YG-EVESISIKNDPH----TGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~----tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+ |. .-.++.++..-. .+++.|||.| |.+.+++.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35688999998876 55 223333333222 3567888877 6676665544
No 250
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.63 E-value=57 Score=22.31 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=23.4
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCc
Q psy1314 42 EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDH 80 (275)
Q Consensus 42 ~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~ 80 (275)
.|.++....+ .+||.|||-.+++++..|++-..+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 3555555433 589999999999999999986544
No 251
>KOG2854|consensus
Probab=41.33 E-value=2.2e+02 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTG 55 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg 55 (275)
+..++|++.+-.|---+.|.+....-|.-..-.+..+-.|+
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TG 120 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTG 120 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCc
Confidence 44889999888887777788777777765455555554443
No 252
>KOG4019|consensus
Probab=41.30 E-value=16 Score=29.05 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCCeEEEcCCCCCC-----CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe
Q psy1314 14 NDERKLFVGGLHRNT-----GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK 85 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~-----t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~ 85 (275)
+=..++++++|+.++ ......++|..+.+....++++. .+..-|.|.+++.|..|.-+ +...|.++
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 334568889998775 22344566776766666666553 45778999999988887554 45566665
No 253
>KOG1175|consensus
Probab=41.18 E-value=40 Score=32.49 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeeCC--CCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccccCCCccee
Q psy1314 27 NTGEKEINDYFSQYGEVESISIKNDP--HTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKRVNPLKCKI 103 (275)
Q Consensus 27 ~~t~~~l~~~f~~~G~v~~~~i~~~~--~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~~~~~~~~l 103 (275)
.+...||+..+..+-.|.++-++-.+ .+++ .=+|||.+++..+....|.+ +...+. .....-..++..+
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge-~v~aFvvl~~g~~~~~~L~kel~~~VR-------~~igp~a~P~~I~ 578 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGE-VVLAFVVLKSGSHDPEQLTKELVKHVR-------SVIGPYAVPRLIV 578 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCe-EEEEEEEEcCCCCChHHHHHHHHHHHH-------hhcCcccccceeE
Confidence 35789999999999889888776543 3333 23689988765433333322 111111 1111112345678
Q ss_pred eecCCCCCCCHHHHHHhcccC
Q psy1314 104 FVGGLTTEISEQDVRDYFSQY 124 (275)
Q Consensus 104 ~V~~l~~~~~~~~l~~~F~~~ 124 (275)
+|.+||...+-..++.++.+.
T Consensus 579 ~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 579 FVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred ecCCCCccccchhHHHHHHHH
Confidence 899999999887777777654
No 254
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=40.51 E-value=1.1e+02 Score=20.51 Aligned_cols=58 Identities=10% Similarity=0.211 Sum_probs=39.8
Q ss_pred eeecCCCCCCCHHHHHHhccc-------CCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 103 IFVGGLTTEISEQDVRDYFSQ-------YGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 103 l~V~~l~~~~~~~~l~~~F~~-------~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
|-..+||..+|.++|.+...+ +..|..++.....+.+ +-||+.+=.|+|..+++-+.-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHc
Confidence 345678888898888766543 3456666555554333 668888888999888887764
No 255
>KOG0156|consensus
Probab=40.07 E-value=47 Score=31.11 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=49.1
Q ss_pred CCCCeEEEcCCCCCCC---HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 14 NDERKLFVGGLHRNTG---EKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t---~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
.+..--+||||+.-.. ...|.++=++||+|..+++=.. -.|.-++.+.|+.++..++..+.+|+.
T Consensus 30 GP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 30 GPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 3445567888875543 3566666678999998877443 347888999999999999999999886
No 256
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=39.09 E-value=67 Score=23.57 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC--ceecCeeecccccccccCCCcc
Q psy1314 24 LHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD--HYIGNKKIDPKRVTKRVNPLKC 101 (275)
Q Consensus 24 Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~--~~~~g~~i~v~~~~~~~~~~~~ 101 (275)
||+-++ .|.++|+.=|+|.++..+.. +.+.+ +.+...+ ..++++ |.+-... ...
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypdnd---al~~~~G~lE~vDg~-i~IGs~q-----~~~ 66 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPDND---ALLYVHGTLEQVDGN-IRIGSGQ-----TPA 66 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCCch---hhheeeeehhhccCc-EEEccCC-----Ccc
Confidence 676665 48899999999998877653 22211 1111111 012222 2221111 112
Q ss_pred eeeecC---------CCCCCCHHHHHHhccc---CCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 102 KIFVGG---------LTTEISEQDVRDYFSQ---YGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 102 ~l~V~~---------l~~~~~~~~l~~~F~~---~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
.|+|.+ -|..+|-.+|+++|+. |.-|..-.+.+|-.-.-+--.||.-|...
T Consensus 67 sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 67 SVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred cEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 233332 3567899999999984 44455444544422222233688887654
No 257
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.83 E-value=13 Score=33.29 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=48.9
Q ss_pred cceeeecCCCCCCCHH--------HHHHhccc--CCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHh
Q psy1314 100 KCKIFVGGLTTEISEQ--------DVRDYFSQ--YGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~--------~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~ 160 (275)
.+.+|+.+++...+.+ ++...|.. ++++..+...++......+|..|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4667888887765544 99999998 6777778777776566678889999999999999984
No 258
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=37.61 E-value=1.6e+02 Score=22.66 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=36.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHH
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLL 75 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al 75 (275)
-++=-++..++..+|++.++. |+. |..|..+..+. + .--|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 334446678999999999987 654 66776655443 1 125999997766655443
No 259
>KOG2891|consensus
Probab=37.34 E-value=37 Score=28.94 Aligned_cols=36 Identities=17% Similarity=0.481 Sum_probs=28.3
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEe
Q psy1314 14 NDERKLFVGGLHRN------------TGEKEINDYFSQYGEVESISIK 49 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~------------~t~~~l~~~f~~~G~v~~~~i~ 49 (275)
+-..+|++.+||.. -+++-|+..|+.||+|..+.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34557889888842 3678899999999999888764
No 260
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=36.55 E-value=1.2e+02 Score=21.88 Aligned_cols=48 Identities=15% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHhh-cCCeeEEEEeeCCC----CCCcccEEEEEEccHHHHHH
Q psy1314 25 HRNTGEKEINDYFSQ-YGEVESISIKNDPH----TGQSRGFAFVTFTTQKAVDD 73 (275)
Q Consensus 25 p~~~t~~~l~~~f~~-~G~v~~~~i~~~~~----tg~~~G~afV~f~~~e~a~~ 73 (275)
..+-+..+|++.+.+ ++.-.++.++..-. .++++||+-| |.|.+.+..
T Consensus 29 ~~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 29 SPTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 355688999998876 55544444443322 3567888876 667666544
No 261
>PF14893 PNMA: PNMA
Probab=35.63 E-value=27 Score=30.78 Aligned_cols=53 Identities=13% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcc----cCCCeEEEEeccCCCCCCeeeEEEEEECCH
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFS----QYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~----~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 152 (275)
+..+.|.|.+||.++++++|++.+. ..|...-+.-+..++.+ .--++|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccc
Confidence 3456799999999999999887765 44543332221122222 22478888654
No 262
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=35.61 E-value=1.5e+02 Score=20.39 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+ ++. |.-..|.+.--.+++.|||.| |.+.+.+++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45677888888876 333 222233333334567888877 7777766544
No 263
>KOG1295|consensus
Probab=35.04 E-value=68 Score=28.66 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCC-C-CCcccEEEEEEccHHHHHHHHHh
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPH-T-GQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~-t-g~~~G~afV~f~~~e~a~~al~~ 77 (275)
......|.|.+||+.+++++|.+.+..+-. |.-..+..... . ..-...+||.|...++.......
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 345678999999999999999999888643 32233331111 0 11246799999999997766654
No 264
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.12 E-value=37 Score=29.60 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=22.5
Q ss_pred EEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 145 CFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 145 afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
|||+|++.++|..|++..... ....+.+..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeCCCc
Confidence 799999999999999864211 2244455544443
No 265
>PRK11901 hypothetical protein; Reviewed
Probab=34.10 E-value=47 Score=29.08 Aligned_cols=53 Identities=8% Similarity=0.194 Sum_probs=35.4
Q ss_pred CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEE--EECCHHHHHHHHhcCCcee
Q psy1314 112 ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI--SFDDQNVAEQVLANPKQVI 166 (275)
Q Consensus 112 ~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV--~f~~~e~a~~Ai~~~~~~~ 166 (275)
.+++.|+.|..++. +..+.|.....+++ .-|..| .|.+.++|+.|+..|...|
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 45778888877764 44555554333333 335544 7899999999999986544
No 266
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.55 E-value=1.2e+02 Score=18.78 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=41.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccH----HHHHHHHHhC
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQ----KAVDDLLAAG 78 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~----e~a~~al~~~ 78 (275)
++.|.+|.-.-....|++.+.+.-.|.++.+-... +.+-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46777887777889999999999889888886653 3677888643 5666666654
No 267
>KOG2295|consensus
Probab=32.80 E-value=14 Score=34.54 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=41.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccH
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQ 68 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~ 68 (275)
...++|||.||+++++-++|..+++.+--+..+.+.....-.+...+..|+|+--
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~ 283 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRG 283 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccc
Confidence 3456799999999999999999999886666666655433345566788899743
No 268
>KOG3194|consensus
Probab=32.50 E-value=2.5e+02 Score=23.81 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcC---CeeEEEEeeCCCCCCcccEEEEEE----------ccHHHHHHHHHhCCceecCeee
Q psy1314 30 EKEINDYFSQYG---EVESISIKNDPHTGQSRGFAFVTF----------TTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 30 ~~~l~~~f~~~G---~v~~~~i~~~~~tg~~~G~afV~f----------~~~e~a~~al~~~~~~~~g~~i 87 (275)
-+-|++.|+.+- ++..|.+-.++.+ |++.+| .+..+...+++.+...+....+
T Consensus 157 se~L~eAlkeLD~tsevl~It~s~dk~~-----F~L~tfG~lG~S~i~~Ps~s~~mEs~~~~~ev~~sy~f 222 (279)
T KOG3194|consen 157 SEGLHEALKELDMTSEVLQITMSPDKPY-----FRLSTFGNLGSSHIDYPSDSSLMESFQCFDEVIGSYDF 222 (279)
T ss_pred hHHHHHHHHHhhhcceeEEEEecCCCcE-----EEEEEecccCcceecCCCcHHHHHHhhhhhhhhceEee
Confidence 466788888774 4555555555332 555555 5555566666654444443333
No 269
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=32.14 E-value=2.5e+02 Score=24.78 Aligned_cols=110 Identities=9% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHHHH----hhcCCeeEEEEeeCCCCCCcccEEEEEEccHHH-HHHHHHhCCceecCeeecccccccccC
Q psy1314 23 GLHRNTGEKEINDYF----SQYGEVESISIKNDPHTGQSRGFAFVTFTTQKA-VDDLLAAGDHYIGNKKIDPKRVTKRVN 97 (275)
Q Consensus 23 ~Lp~~~t~~~l~~~f----~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~-a~~al~~~~~~~~g~~i~v~~~~~~~~ 97 (275)
|.+++-+-+.++..| ++||.-.++++++.-.. ++|=+-|.|..+-. .-+.+.+ .-.++. .
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~~~l~~i~l---~~~g~i----------~ 183 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPSKLLPPLLL---EERGEI----------E 183 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecccCCCccee---ecCCCe----------E
Confidence 556666667766644 67888777888775333 33344455533211 1112211 001111 0
Q ss_pred CCcceeeecCCCCCCCHHHHH---Hhccc-CCCeEEEEeccCCCCCCeeeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVR---DYFSQ-YGSITEFQQPFDKSKNMKKGFCFISF 149 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~---~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~f 149 (275)
...-..++.+||..+.+.+++ +++.+ +. .++.|..+..++.+.|++.+-+
T Consensus 184 ~irg~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 184 KIRGISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEEEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEE
Confidence 112245677889888776554 44544 32 2344444444455666665443
No 270
>CHL00030 rpl23 ribosomal protein L23
Probab=31.12 E-value=1.9e+02 Score=20.38 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=25.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeC
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKND 51 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~ 51 (275)
..|+=.++.++++.+|++.++. |+. |..|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4556667889999999999987 664 777766554
No 271
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.57 E-value=2.3e+02 Score=21.17 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCcee
Q psy1314 15 DERKLFVGGLHRN---TGEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYI 82 (275)
Q Consensus 15 ~~~~l~v~~Lp~~---~t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~ 82 (275)
+...|.|...... .+...+.+.+++-|- ++++..-.+ ...|.|.+.|+..+|.+.....+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L 97 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTL 97 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHc
Confidence 3445666655333 577888999988875 556655443 58899999998877776544434
No 272
>KOG2044|consensus
Probab=29.45 E-value=3.3e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=12.4
Q ss_pred ccEEEEEEccHHHHHHHHH
Q psy1314 58 RGFAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 58 ~G~afV~f~~~e~a~~al~ 76 (275)
.|.|.+-|-++.-..+|+.
T Consensus 631 QGIalLPFiDe~rLl~a~~ 649 (931)
T KOG2044|consen 631 QGIALLPFIDERRLLSAVA 649 (931)
T ss_pred cccccccccchhhHHHHHH
Confidence 4677777777665555554
No 273
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.32 E-value=2.1e+02 Score=20.17 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHhhc--------CCeeEEEEeeC-----CCCCCccc-EEEEEEccHHHHHHHHH
Q psy1314 24 LHRNTGEKEINDYFSQY--------GEVESISIKND-----PHTGQSRG-FAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 24 Lp~~~t~~~l~~~f~~~--------G~v~~~~i~~~-----~~tg~~~G-~afV~f~~~e~a~~al~ 76 (275)
|.++++++++.++.+++ |+|..+.-.-. +..+..+| |.++.|....++-+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 45677777766665554 45555442211 12234556 57888886666666655
No 274
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.97 E-value=2e+02 Score=20.04 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeC
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKND 51 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~ 51 (275)
..++=.++.+++..||+++|+. |+. |.+|..+.-
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 3555567889999999999987 664 666655543
No 275
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=28.11 E-value=12 Score=23.70 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=20.2
Q ss_pred eeeEEEEEECC-HHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 141 KKGFCFISFDD-QNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 141 ~~G~afV~f~~-~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
++|||||.-.+ .++.--.-..++..++|-++.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 47899999987 11111111223455788888887776
No 276
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=27.97 E-value=1.9e+02 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=17.6
Q ss_pred CCCCHHHHHHhcccCCCeEEEEecc
Q psy1314 110 TEISEQDVRDYFSQYGSITEFQQPF 134 (275)
Q Consensus 110 ~~~~~~~l~~~F~~~G~v~~v~i~~ 134 (275)
..++.+.|++.| +||.+. ++++.
T Consensus 63 e~vD~e~v~~~~-PyG~~~-v~vv~ 85 (116)
T TIGR02058 63 DQLDEDKVKAII-PYGTVT-VEVED 85 (116)
T ss_pred HhcCHHHHHHhC-CCCeeE-EEEEc
Confidence 558899999998 699874 66653
No 277
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=27.09 E-value=2.7e+02 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=23.2
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC
Q psy1314 43 VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 43 v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~ 78 (275)
|.+|.+... ..||.||+....+++..+++..
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 555555443 6899999999888888888753
No 278
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.72 E-value=4.9e+02 Score=23.92 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.5
Q ss_pred eeEEEE
Q psy1314 142 KGFCFI 147 (275)
Q Consensus 142 ~G~afV 147 (275)
.|.|++
T Consensus 342 ~G~ai~ 347 (456)
T PRK10590 342 TGEALS 347 (456)
T ss_pred CeeEEE
Confidence 344443
No 279
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=26.05 E-value=2.2e+02 Score=19.38 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=32.9
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------hcCCeeEEEEeeCCCCCC-cccE---EEEEEccHHHHHHHH
Q psy1314 19 LFVGGLHRNTGEKEINDYFS-------QYGEVESISIKNDPHTGQ-SRGF---AFVTFTTQKAVDDLL 75 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~-------~~G~v~~~~i~~~~~tg~-~~G~---afV~f~~~e~a~~al 75 (275)
|.+-.|..+++++++.++++ ..-.|.++.+-++..... .++| .+++|.+.++.++-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 44445778888888755443 334577887766543322 2344 356677777665444
No 280
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=25.92 E-value=3.3e+02 Score=26.55 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCCCCcccEEE-EEEccHHHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPHTGQSRGFAF-VTFTTQKAVDDLLA 76 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~tg~~~G~af-V~f~~~e~a~~al~ 76 (275)
.++|.|.-||..++.+.|.+...+. +++. |.-++|- |.+ +..| |+++....++..++
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~--~v~i~i~l~~~~~~~~~~~ 280 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE--NVEIEIKLPRGVYASEVIE 280 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC--cEEEEEEECCCCCHHHHHH
Confidence 4689999999999999998876543 5554 5555553 332 3433 34444444444443
No 281
>KOG4365|consensus
Probab=25.30 E-value=13 Score=33.68 Aligned_cols=75 Identities=7% Similarity=-0.115 Sum_probs=51.7
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
+.++..||...+++++.-+|+.++.|..+..-...+.+...-.+||+-.+. ++..+|..+. ..+.+..+++..+.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 456778999999999999999999998887766555555666778876543 3344444443 44556555555443
No 282
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=24.96 E-value=4.5e+02 Score=24.52 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
.++|.|.-||..++.+.|.+.+.+. |.|. |.=++|..+ ..- .--|++.....++..|..
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~-~~v-~i~I~Lk~~~~~~~vl~~ 281 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DLP-HIEIKLPKGIYAKDLLRP 281 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCC-CCc-eEEEEECCCCCHHHHHHH
Confidence 4689999999999999998876543 5554 444555332 221 223555555556665553
No 283
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.82 E-value=1.9e+02 Score=18.23 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=32.7
Q ss_pred CHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC
Q psy1314 29 GEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD 79 (275)
Q Consensus 29 t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~ 79 (275)
.-.+|.++|.+.+- |.++.+.... . ++..-+.+.+.+.+.++|+..+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 45788889988875 7777764432 1 3566667777778888887654
No 284
>KOG4008|consensus
Probab=24.76 E-value=52 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=28.1
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQ 131 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~ 131 (275)
...+||+-|||...|++.|+++.++.|-+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 457899999999999999999999988665544
No 285
>PRK11901 hypothetical protein; Reviewed
Probab=24.55 E-value=2e+02 Score=25.32 Aligned_cols=67 Identities=7% Similarity=0.113 Sum_probs=41.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcc-cEEEEEEccHHHHHHHHHhCCceec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSR-GFAFVTFTTQKAVDDLLAAGDHYIG 83 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~-G~afV~f~~~e~a~~al~~~~~~~~ 83 (275)
+....+|-|..+ ..++.|.+|..+++ +..+++......|+.- -..+=.|.+.++|++|++.+...+.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 344455555543 56888888888875 4555555543334331 1123357899999999998765544
No 286
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.33 E-value=1.6e+02 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.8
Q ss_pred CeEEEEeccCCCCCCeeeEEEEEECC
Q psy1314 126 SITEFQQPFDKSKNMKKGFCFISFDD 151 (275)
Q Consensus 126 ~v~~v~i~~~~~~~~~~G~afV~f~~ 151 (275)
+|.+|+|..-...+.-+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36777777665568889999999977
No 287
>KOG3432|consensus
Probab=24.18 E-value=71 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEE
Q psy1314 26 RNTGEKEINDYFSQYGEVESISI 48 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~G~v~~~~i 48 (275)
..+|+++|++.|..|-.-.+|.|
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEE
Confidence 58999999999999965444443
No 288
>PHA01632 hypothetical protein
Probab=24.10 E-value=90 Score=19.58 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=17.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQY 40 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~~ 40 (275)
|.|-.+|..-|+++|+..+.+.
T Consensus 19 ilieqvp~kpteeelrkvlpki 40 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKI 40 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHH
Confidence 4456889999999999877653
No 289
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=23.81 E-value=2.4e+02 Score=19.04 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=40.6
Q ss_pred EEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 20 FVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 20 ~v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
+|=.+|.-+.-+||..... .||-..++....+ --.|-..+.++.++|++.....
T Consensus 12 RIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s 66 (79)
T cd06405 12 RIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRS 66 (79)
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccC
Confidence 3445677788888887774 6898888877665 2668889999999999975543
No 290
>PRK10905 cell division protein DamX; Validated
Probab=23.65 E-value=95 Score=27.18 Aligned_cols=53 Identities=2% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEE--EECCHHHHHHHHhcCCcee
Q psy1314 112 ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI--SFDDQNVAEQVLANPKQVI 166 (275)
Q Consensus 112 ~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV--~f~~~e~a~~Ai~~~~~~~ 166 (275)
.+++.|+++..+++ +....+.....+|+. -|-.+ .|.+.++|++|+..|...|
T Consensus 256 Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 256 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 45677777777764 333334333333332 23333 7899999999999986544
No 291
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=23.61 E-value=1.7e+02 Score=23.23 Aligned_cols=91 Identities=8% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccccCCCcceeeecCCC
Q psy1314 30 EKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLT 109 (275)
Q Consensus 30 ~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~ 109 (275)
.++|.+.|++.-.+..+..+.+. .--.|-.++|...........+...-..+.++-+.+... ...|-+.+-+
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~-------~~~ie~tG~~ 128 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEE-------SLILEVTGDP 128 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCC-------EEEEEEcCCH
Confidence 67888899988788888887653 234566788888654332222222222466666665533 2344454433
Q ss_pred CCCCHHHHHHhcccCCCeEEE
Q psy1314 110 TEISEQDVRDYFSQYGSITEF 130 (275)
Q Consensus 110 ~~~~~~~l~~~F~~~G~v~~v 130 (275)
.. -+.+-+++++||-++-+
T Consensus 129 ~k--i~a~~~~l~~~gi~e~~ 147 (174)
T CHL00100 129 GK--IVAIEQLLEKFGIIEIA 147 (174)
T ss_pred HH--HHHHHHHhhhcCCEEEE
Confidence 32 34566777889854433
No 292
>KOG4365|consensus
Probab=23.24 E-value=17 Score=32.94 Aligned_cols=59 Identities=3% Similarity=-0.143 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~ 76 (275)
.+.|+..||-.++++++.-+|..++.|..+.+.+..+.+..+=.+||.-.+. ++..+|+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~ 62 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQ 62 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccC
Confidence 4567889999999999999999999999888877666666666788876543 2444443
No 293
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=23.15 E-value=2.7e+02 Score=25.82 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCCCCcccEEEEE-EccHHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPHTGQSRGFAFVT-FTTQKAVDDLL 75 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~tg~~~G~afV~-f~~~e~a~~al 75 (275)
.++|.|.-||..+..+++.+.+... +++..|.=++|..+. .+..||. ++....++..+
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~ 286 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVL 286 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHH
Confidence 4689999999999999988876543 334344444443322 2565554 44433444333
No 294
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.04 E-value=2.1e+02 Score=20.26 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.0
Q ss_pred ccEEEEEEccHHHHHHHHH
Q psy1314 58 RGFAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 58 ~G~afV~f~~~e~a~~al~ 76 (275)
.....|+|.+.+.|..+..
T Consensus 53 tr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred ccEEEEEcCCHHHHHHHhc
Confidence 4579999999999988865
No 295
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.47 E-value=1.3e+02 Score=20.88 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=32.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCC----CCCc------ccEEEEEEccHH
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPH----TGQS------RGFAFVTFTTQK 69 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~----tg~~------~G~afV~f~~~e 69 (275)
.++=.++.++|+.||+++++. |+. |.+|..+.-+. .+.. .--|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 344457889999999999987 665 66766554321 1111 124888887654
No 296
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=22.25 E-value=3.1e+02 Score=21.40 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeC
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKND 51 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~ 51 (275)
..|+=.++.+++..+|++.|+. |+. |.+|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 4577778899999999999987 664 777766553
No 297
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.24 E-value=44 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.3
Q ss_pred eeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeee
Q psy1314 142 KGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKF 178 (275)
Q Consensus 142 ~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~ 178 (275)
.++..++|.+.+++.+++......+.+..+.+....+
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 4578999999999999998877778887777776664
No 298
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.19 E-value=1.9e+02 Score=20.41 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=28.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh---cCCeeEEEE--eeCCCCCCcccEEEEEEc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQ---YGEVESISI--KNDPHTGQSRGFAFVTFT 66 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~---~G~v~~~~i--~~~~~tg~~~G~afV~f~ 66 (275)
..|+.+||..+.+.++...-+. +.+-..|.+ ........+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688999999988776655544 433333333 123344566777665554
No 299
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=22.10 E-value=2.1e+02 Score=19.37 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=29.3
Q ss_pred HHHHHHhCCceecCeeecccccccccCCCcceeeecCCCCCCCHH-------HHHHhcccCCC
Q psy1314 71 VDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQ-------DVRDYFSQYGS 126 (275)
Q Consensus 71 a~~al~~~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~-------~l~~~F~~~G~ 126 (275)
.+++++.+.....++.+.+..+.+-...+..-++..|-|..+++. .|++.|.-.|.
T Consensus 11 l~~~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~ 73 (80)
T PF14714_consen 11 LQKALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGV 73 (80)
T ss_dssp HHHHHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCce
Confidence 344454443223788888888877766666656666778887763 45555544444
No 300
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=22.06 E-value=6.8e+02 Score=23.65 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEee--CCCCCCcccEEEEEEcc-----HHHHHHHHHhCCceecCeeecccccccccCC
Q psy1314 26 RNTGEKEINDYFSQYGEVESISIKN--DPHTGQSRGFAFVTFTT-----QKAVDDLLAAGDHYIGNKKIDPKRVTKRVNP 98 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~G~v~~~~i~~--~~~tg~~~G~afV~f~~-----~e~a~~al~~~~~~~~g~~i~v~~~~~~~~~ 98 (275)
..+...+|++.+.++-.|.++.++- +.........++|...+ .++..+.+.. .+. ....
T Consensus 470 ~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~---~L~-----------~~~~ 535 (600)
T PRK08279 470 ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYE---RLP-----------AYAV 535 (600)
T ss_pred cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHh---hCc-----------cccC
Confidence 4578899999999988888887643 22222234566666552 2222222221 111 1112
Q ss_pred CcceeeecCCCCCC----CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHH
Q psy1314 99 LKCKIFVGGLTTEI----SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQV 158 (275)
Q Consensus 99 ~~~~l~V~~l~~~~----~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~A 158 (275)
+...++|..||... +...|++.+..--.+..+-...|... . +.+...++-.|+-+
T Consensus 536 P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~ 594 (600)
T PRK08279 536 PLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGS---G--GYVPLTAELYAEIA 594 (600)
T ss_pred CeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCC---C--ceEecCHHHHHHHh
Confidence 33456677787654 56677665554444544444445433 3 45566666555543
No 301
>PRK10905 cell division protein DamX; Validated
Probab=21.69 E-value=1.4e+02 Score=26.14 Aligned_cols=68 Identities=6% Similarity=0.084 Sum_probs=40.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcc-cEEEEEEccHHHHHHHHHhCCceecC
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSR-GFAFVTFTTQKAVDDLLAAGDHYIGN 84 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~-G~afV~f~~~e~a~~al~~~~~~~~g 84 (275)
+....+|-|.-+ .+++.|++|..+++. ....+......|+.. -.-+=.|.+.++|++|++.+...+..
T Consensus 244 pa~~YTLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~vQa 312 (328)
T PRK10905 244 PSSHYTLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQA 312 (328)
T ss_pred CCCceEEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHHHh
Confidence 334455555544 566888888888753 333333332333321 12233589999999999987665543
No 302
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.68 E-value=94 Score=19.93 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=30.1
Q ss_pred EEEEccHHHHHHHHHhCCceecCeeecccccccccCCCcceeeecCCCCCCCHHHHHHhcc
Q psy1314 62 FVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFS 122 (275)
Q Consensus 62 fV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~ 122 (275)
+..|.+.+.|++.+..+... +....+ ........-.+|+|+..+....-+.+.+.+.
T Consensus 9 v~s~~~~~~A~~~~~~l~~~--g~~~~~--~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKK--GPDAYV--VQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHH--T-------EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHhc--CCCcce--EEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 34678999999888764332 222221 2222244557899987766555444444443
No 303
>KOG2854|consensus
Probab=21.53 E-value=1.1e+02 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=17.8
Q ss_pred ccEEEEEEccHHHHHHHHHhC
Q psy1314 58 RGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 58 ~G~afV~f~~~e~a~~al~~~ 78 (275)
--|+.|.|.++++|++..+.+
T Consensus 212 ~~y~DiifgNe~EA~af~~~~ 232 (343)
T KOG2854|consen 212 LPYADIIFGNEDEAAAFARAH 232 (343)
T ss_pred cCcceEEEcCHHHHHHHHHhh
Confidence 348999999999999988765
No 304
>COG5584 Predicted small secreted protein [Function unknown]
Probab=21.47 E-value=1e+02 Score=21.85 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEee
Q psy1314 24 LHRNTGEKEINDYFSQYGEVESISIKN 50 (275)
Q Consensus 24 Lp~~~t~~~l~~~f~~~G~v~~~~i~~ 50 (275)
|+.+..-+-+++.|++++.|+--.|..
T Consensus 30 is~e~alk~vk~afk~~mnI~GSwI~~ 56 (103)
T COG5584 30 ISRENALKVVKEAFKQFMNIKGSWIVY 56 (103)
T ss_pred cChhHHHHHHHHHhcccCCcceeEEEE
Confidence 344444444555555555554444433
No 305
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.22 E-value=97 Score=17.50 Aligned_cols=17 Identities=6% Similarity=0.263 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHhhcCCe
Q psy1314 27 NTGEKEINDYFSQYGEV 43 (275)
Q Consensus 27 ~~t~~~l~~~f~~~G~v 43 (275)
.+++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998754
No 306
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=4.1e+02 Score=20.55 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeeCCCC---------CCccc-EEEEEEccHHHH
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPHT---------GQSRG-FAFVTFTTQKAV 71 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~t---------g~~~G-~afV~f~~~e~a 71 (275)
+...|++.-++.-+++++.++..++- .++.+|.+-+.+.+ ...+. |-+|.|.+-+..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 34789999999999999999988764 55777776554332 22334 788999886543
No 307
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.33 E-value=1.2e+02 Score=21.50 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.8
Q ss_pred eeeEEEEEECCHHHHHHHHhcC
Q psy1314 141 KKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 141 ~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
---|+.++|.+.+++.+|..++
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3458899999999998888764
No 308
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.28 E-value=1.6e+02 Score=19.24 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=31.7
Q ss_pred EEEEEEccHHHHHHHHHhCC-ceecCeeecccccccccCCCcceeeecCCCCCCCHHHHHHhcccCC
Q psy1314 60 FAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYG 125 (275)
Q Consensus 60 ~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G 125 (275)
+.+|.|.+..+|.+|-+.+. ..+..+-+. .++.-...|-+-+. ++. -+.+.+.++++..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP----~P~~i~~~CG~al~-~~~-~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIP----TPREISAGCGLALR-FEP-EDLEKIKEILEENG 63 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeC----CChhccCCCCEEEE-ECh-hhHHHHHHHHHHCC
Confidence 68899999998888866421 122222221 12222344544442 122 35566677776654
No 309
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.04 E-value=2.4e+02 Score=21.68 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 107 GLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 107 ~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
.|+..+.++.|.++.+-+|.|.+.. -.| -.+.|.+.+...+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5788888999999999999887765 222 356889999999999874
Done!