Query psy1314
Match_columns 275
No_of_seqs 291 out of 2678
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.2E-38 7.5E-43 256.9 21.1 178 8-185 5-189 (196)
2 4f02_A Polyadenylate-binding p 100.0 2.8E-36 9.5E-41 248.2 17.6 167 13-181 12-183 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.1E-36 3.6E-41 240.8 13.7 166 14-180 1-167 (167)
4 2qfj_A FBP-interacting repress 100.0 4.1E-35 1.4E-39 241.1 18.7 170 14-183 26-209 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.2E-35 1.8E-39 231.1 17.9 162 15-176 2-168 (168)
6 3md3_A Nuclear and cytoplasmic 100.0 1.4E-34 4.8E-39 228.0 19.0 160 17-177 1-165 (166)
7 1fxl_A Paraneoplastic encephal 100.0 1.5E-34 5E-39 228.1 18.9 162 15-176 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 1.3E-33 4.4E-38 224.5 17.3 163 14-177 1-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 5.7E-34 1.9E-38 227.0 12.9 165 10-180 7-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 8.3E-33 2.8E-37 219.4 17.8 157 14-176 2-171 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 2.6E-32 9E-37 221.4 18.0 162 14-181 2-196 (198)
12 3smz_A Protein raver-1, ribonu 100.0 2E-31 6.8E-36 228.4 20.4 167 14-181 93-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 6.7E-31 2.3E-35 224.8 19.8 159 11-177 4-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.2E-31 7.7E-36 217.4 15.7 156 14-176 2-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-31 1E-35 228.2 17.2 165 14-180 115-292 (292)
16 3sde_A Paraspeckle component 1 100.0 1.5E-30 5.1E-35 220.4 17.2 160 10-181 16-181 (261)
17 2adc_A Polypyrimidine tract-bi 100.0 9.9E-31 3.4E-35 217.4 15.8 160 10-179 28-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 9.7E-31 3.3E-35 224.9 16.1 163 10-181 35-199 (292)
19 3smz_A Protein raver-1, ribonu 100.0 9.4E-30 3.2E-34 217.9 19.6 156 14-181 20-177 (284)
20 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-30 7.7E-35 210.3 12.5 155 15-179 2-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 9.5E-24 3.3E-28 165.2 14.0 136 45-182 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 2.3E-22 7.9E-27 148.9 9.6 100 15-116 4-113 (115)
23 3pgw_S U1-70K; protein-RNA com 99.9 1.6E-21 5.5E-26 175.8 11.3 83 99-181 101-184 (437)
24 4fxv_A ELAV-like protein 1; RN 99.8 9.4E-21 3.2E-25 136.4 10.0 80 99-178 18-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.8 1.6E-20 5.3E-25 135.2 10.7 81 14-94 17-98 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.3E-20 7.8E-25 145.6 11.8 85 98-182 37-122 (156)
27 2dgs_A DAZ-associated protein 99.8 3.3E-20 1.1E-24 133.5 11.4 90 8-97 2-91 (99)
28 2i2y_A Fusion protein consists 99.8 7.5E-21 2.5E-25 147.4 8.0 120 55-180 10-149 (150)
29 3s7r_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 130.0 10.6 84 9-92 4-87 (87)
30 2cqd_A RNA-binding region cont 99.8 1.4E-19 4.7E-24 134.1 13.6 86 96-181 13-98 (116)
31 2lxi_A RNA-binding protein 10; 99.8 9.7E-21 3.3E-25 134.2 6.9 83 16-98 1-86 (91)
32 2dh8_A DAZ-associated protein 99.8 1E-19 3.5E-24 132.3 11.9 91 7-97 7-97 (105)
33 3s8s_A Histone-lysine N-methyl 99.8 8.5E-20 2.9E-24 133.8 10.8 83 13-95 3-86 (110)
34 2lea_A Serine/arginine-rich sp 99.8 1.9E-20 6.6E-25 142.4 7.4 123 60-182 6-130 (135)
35 2lxi_A RNA-binding protein 10; 99.8 3.2E-20 1.1E-24 131.5 7.0 82 101-182 2-86 (91)
36 2cqd_A RNA-binding region cont 99.8 2.4E-19 8.3E-24 132.8 12.0 89 8-96 9-97 (116)
37 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-19 4.4E-24 132.7 10.3 90 8-97 17-106 (109)
38 2cq0_A Eukaryotic translation 99.8 1.9E-19 6.6E-24 130.4 10.7 90 8-97 7-97 (103)
39 1x5u_A Splicing factor 3B subu 99.8 2.1E-19 7.2E-24 130.6 10.9 91 7-97 6-97 (105)
40 1whw_A Hypothetical protein ri 99.8 2.5E-19 8.5E-24 128.8 10.8 87 11-97 3-90 (99)
41 2dgs_A DAZ-associated protein 99.8 2.9E-19 1E-23 128.5 11.2 87 97-183 7-93 (99)
42 2cpz_A CUG triplet repeat RNA- 99.8 3.2E-19 1.1E-23 131.9 11.6 88 10-97 19-107 (115)
43 2dnm_A SRP46 splicing factor; 99.8 1.5E-19 5.3E-24 130.9 9.7 90 8-97 5-95 (103)
44 2cqc_A Arginine/serine-rich sp 99.8 3.8E-19 1.3E-23 126.8 11.6 87 7-93 6-93 (95)
45 2lkz_A RNA-binding protein 5; 99.8 3.9E-20 1.3E-24 131.8 6.3 84 11-94 4-94 (95)
46 2cqg_A TDP-43, TAR DNA-binding 99.8 5.5E-19 1.9E-23 128.0 12.4 88 9-97 8-95 (103)
47 2dgo_A Cytotoxic granule-assoc 99.8 5.5E-19 1.9E-23 130.6 12.5 93 6-98 5-98 (115)
48 2cq0_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 128.2 11.9 87 96-182 11-98 (103)
49 1whw_A Hypothetical protein ri 99.8 4.8E-19 1.6E-23 127.3 11.7 86 98-183 6-92 (99)
50 3s8s_A Histone-lysine N-methyl 99.8 2.2E-19 7.6E-24 131.6 9.9 82 98-179 4-86 (110)
51 3lqv_A PRE-mRNA branch site pr 99.8 1.2E-19 4E-24 134.2 8.5 105 12-126 4-109 (115)
52 1x5s_A Cold-inducible RNA-bind 99.8 2.6E-19 8.9E-24 129.5 10.0 89 9-97 5-94 (102)
53 2dnz_A Probable RNA-binding pr 99.8 2.5E-19 8.6E-24 127.8 9.7 84 99-182 4-88 (95)
54 2dnz_A Probable RNA-binding pr 99.8 3.5E-19 1.2E-23 127.0 10.4 85 13-97 2-87 (95)
55 1s79_A Lupus LA protein; RRM, 99.8 1.5E-19 5.1E-24 130.9 8.4 83 11-94 6-88 (103)
56 2e5h_A Zinc finger CCHC-type a 99.8 4.9E-19 1.7E-23 126.0 11.1 87 6-92 6-93 (94)
57 1x4h_A RNA-binding protein 28; 99.8 4.7E-19 1.6E-23 130.1 11.2 90 8-97 7-103 (111)
58 3s7r_A Heterogeneous nuclear r 99.8 6E-19 2E-23 123.8 11.2 80 97-176 8-87 (87)
59 2dng_A Eukaryotic translation 99.8 4.6E-19 1.6E-23 128.4 10.9 87 10-97 9-95 (103)
60 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.8E-19 1.3E-23 124.7 10.1 83 13-95 3-86 (87)
61 2jrs_A RNA-binding protein 39; 99.8 3.9E-19 1.3E-23 130.0 10.5 91 5-95 15-106 (108)
62 1u6f_A Tcubp1, RNA-binding pro 99.8 4.8E-19 1.6E-23 135.4 11.4 85 98-182 40-125 (139)
63 2hgn_A Heterogeneous nuclear r 99.8 2.3E-20 7.7E-25 142.2 3.9 121 59-181 2-125 (139)
64 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-19 1.1E-23 129.1 9.6 90 8-97 4-94 (102)
65 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-19 5.4E-24 130.6 8.0 87 8-96 7-93 (102)
66 1wg5_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 129.5 9.5 88 8-96 7-95 (104)
67 2cpz_A CUG triplet repeat RNA- 99.8 4.2E-19 1.4E-23 131.3 10.3 88 97-184 22-110 (115)
68 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4E-23 126.3 12.4 86 97-183 12-97 (103)
69 3md1_A Nuclear and cytoplasmic 99.8 6.3E-19 2.2E-23 122.4 10.5 81 16-96 1-82 (83)
70 1x5t_A Splicing factor 3B subu 99.8 4.6E-19 1.6E-23 126.7 10.0 84 99-182 4-89 (96)
71 2div_A TRNA selenocysteine ass 99.8 6.4E-19 2.2E-23 126.7 10.8 86 11-96 4-95 (99)
72 1x5t_A Splicing factor 3B subu 99.8 3.9E-19 1.3E-23 127.1 9.6 85 13-97 2-88 (96)
73 1x5u_A Splicing factor 3B subu 99.8 5.1E-19 1.7E-23 128.6 10.2 87 96-182 11-98 (105)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.6E-19 1.6E-23 123.7 9.5 81 12-92 3-84 (85)
75 2dgp_A Bruno-like 4, RNA bindi 99.8 4.6E-19 1.6E-23 129.1 9.8 90 8-97 5-98 (106)
76 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.4E-19 1.8E-23 123.9 9.8 82 99-180 5-87 (87)
77 1wi8_A EIF-4B, eukaryotic tran 99.8 5.3E-19 1.8E-23 128.3 10.1 87 10-97 9-96 (104)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-18 3.9E-23 126.6 11.9 85 97-183 12-98 (104)
79 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.4E-23 125.3 12.1 86 10-96 11-97 (100)
80 2dgo_A Cytotoxic granule-assoc 99.8 2.5E-18 8.5E-23 127.0 13.9 87 97-183 12-99 (115)
81 2rs2_A Musashi-1, RNA-binding 99.8 6.7E-19 2.3E-23 128.9 10.7 86 97-182 22-107 (109)
82 2dgw_A Probable RNA-binding pr 99.8 9.1E-19 3.1E-23 123.9 11.0 86 9-96 3-88 (91)
83 1p27_B RNA-binding protein 8A; 99.8 6.2E-19 2.1E-23 128.4 10.3 86 11-96 18-104 (106)
84 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.5E-19 1.5E-23 128.2 9.3 87 97-183 9-96 (102)
85 1x4b_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 131.4 9.3 84 99-182 26-109 (116)
86 1x4b_A Heterogeneous nuclear r 99.8 3.1E-19 1.1E-23 132.2 8.5 84 14-97 25-108 (116)
87 2cph_A RNA binding motif prote 99.8 9.9E-19 3.4E-23 127.5 11.0 90 8-97 7-99 (107)
88 2dh8_A DAZ-associated protein 99.8 5.1E-19 1.7E-23 128.6 9.4 87 97-183 13-99 (105)
89 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.2E-24 132.4 7.7 85 11-96 10-95 (114)
90 2kxn_B Transformer-2 protein h 99.8 7.6E-19 2.6E-23 132.5 10.5 88 9-96 39-127 (129)
91 1x5s_A Cold-inducible RNA-bind 99.8 3.8E-19 1.3E-23 128.6 8.5 87 97-183 9-96 (102)
92 2cpf_A RNA binding motif prote 99.8 6.8E-19 2.3E-23 126.3 9.8 85 13-97 2-90 (98)
93 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.6E-23 126.1 11.4 86 11-97 4-92 (104)
94 3ex7_B RNA-binding protein 8A; 99.8 4.5E-19 1.5E-23 133.2 9.2 87 97-183 19-106 (126)
95 2cq4_A RNA binding motif prote 99.8 2.9E-19 1E-23 131.9 8.0 82 14-95 23-104 (114)
96 2dnn_A RNA-binding protein 12; 99.8 3.3E-19 1.1E-23 130.2 8.1 83 10-94 10-92 (109)
97 2dng_A Eukaryotic translation 99.8 2.4E-18 8.3E-23 124.6 12.6 85 97-182 12-96 (103)
98 3ucg_A Polyadenylate-binding p 99.8 5.6E-19 1.9E-23 124.4 8.9 81 15-95 5-85 (89)
99 3q2s_C Cleavage and polyadenyl 99.8 1.7E-19 5.9E-24 149.2 7.2 81 99-179 67-150 (229)
100 2dnm_A SRP46 splicing factor; 99.8 4.2E-19 1.4E-23 128.6 8.4 86 97-182 10-96 (103)
101 2cpf_A RNA binding motif prote 99.8 9.1E-19 3.1E-23 125.6 10.0 85 99-183 4-92 (98)
102 2lkz_A RNA-binding protein 5; 99.8 2E-19 6.9E-24 128.1 6.4 80 99-178 8-94 (95)
103 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4E-23 124.3 10.4 84 9-93 9-93 (95)
104 2fy1_A RNA-binding motif prote 99.8 1.4E-18 4.7E-23 128.7 11.1 84 98-182 5-89 (116)
105 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-18 4.4E-23 125.4 10.5 82 11-98 11-95 (105)
106 2d9p_A Polyadenylate-binding p 99.8 1.4E-18 4.7E-23 125.9 10.7 89 8-98 7-96 (103)
107 2mss_A Protein (musashi1); RNA 99.8 2.7E-19 9.2E-24 121.9 6.5 75 18-92 1-75 (75)
108 2cph_A RNA binding motif prote 99.8 9.8E-19 3.3E-23 127.5 10.0 88 96-183 11-101 (107)
109 1x4h_A RNA-binding protein 28; 99.8 1.3E-18 4.5E-23 127.7 10.6 87 97-183 12-105 (111)
110 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.8E-18 9.5E-23 124.3 12.1 88 8-97 7-95 (103)
111 3md1_A Nuclear and cytoplasmic 99.8 1.5E-18 5E-23 120.6 10.2 80 101-180 2-82 (83)
112 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-18 4.7E-23 127.4 10.3 87 10-96 20-107 (110)
113 2hgm_A HNRPF protein, heteroge 99.8 4.7E-19 1.6E-23 132.5 7.9 84 10-95 36-121 (126)
114 3p5t_L Cleavage and polyadenyl 99.8 2.8E-19 9.7E-24 126.3 6.4 81 17-97 2-85 (90)
115 2dnh_A Bruno-like 5, RNA bindi 99.8 2.1E-18 7.3E-23 125.3 11.1 87 11-98 10-100 (105)
116 1wez_A HnRNP H', FTP-3, hetero 99.8 9.8E-19 3.3E-23 126.4 9.2 82 97-180 12-93 (102)
117 2khc_A Testis-specific RNP-typ 99.8 1.4E-18 4.9E-23 128.9 10.4 82 11-92 35-117 (118)
118 2dgp_A Bruno-like 4, RNA bindi 99.8 7.3E-19 2.5E-23 128.0 8.6 87 96-182 9-99 (106)
119 2d9p_A Polyadenylate-binding p 99.8 1.5E-18 5.2E-23 125.7 10.2 86 97-184 12-98 (103)
120 2x1f_A MRNA 3'-END-processing 99.8 1.6E-18 5.6E-23 123.9 10.2 82 15-96 1-83 (96)
121 2cpe_A RNA-binding protein EWS 99.8 9.8E-19 3.3E-23 128.8 9.3 86 97-182 12-106 (113)
122 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.8E-23 131.9 11.3 89 10-98 36-125 (139)
123 2la6_A RNA-binding protein FUS 99.8 2E-18 6.8E-23 124.1 10.5 85 8-92 5-98 (99)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-18 5E-23 136.6 10.7 86 99-184 71-157 (165)
125 2cpe_A RNA-binding protein EWS 99.8 1.9E-18 6.5E-23 127.3 10.6 88 10-97 9-105 (113)
126 2cq3_A RNA-binding protein 9; 99.8 5.3E-18 1.8E-22 122.7 12.5 89 7-97 6-95 (103)
127 1iqt_A AUF1, heterogeneous nuc 99.8 3.9E-19 1.3E-23 121.1 5.9 75 18-92 1-75 (75)
128 2do4_A Squamous cell carcinoma 99.8 2.4E-18 8.2E-23 123.9 10.4 84 97-181 14-98 (100)
129 3ulh_A THO complex subunit 4; 99.8 2.7E-18 9.4E-23 125.1 10.7 83 10-93 23-106 (107)
130 2db1_A Heterogeneous nuclear r 99.8 6.8E-19 2.3E-23 130.8 7.6 84 11-95 12-98 (118)
131 2fy1_A RNA-binding motif prote 99.8 2E-18 6.7E-23 127.9 10.1 84 12-96 3-87 (116)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.7E-19 1.6E-23 121.3 6.2 76 17-92 1-76 (77)
133 1p27_B RNA-binding protein 8A; 99.8 2E-18 6.9E-23 125.6 9.9 85 97-181 20-105 (106)
134 3ns6_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 128.5 5.6 83 13-95 3-93 (100)
135 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-18 9.7E-23 122.0 10.5 81 97-177 13-94 (94)
136 2dhg_A TRNA selenocysteine ass 99.8 1.6E-18 5.4E-23 125.7 9.2 85 97-182 6-93 (104)
137 1x4e_A RNA binding motif, sing 99.8 7.3E-19 2.5E-23 122.8 7.1 81 13-93 2-83 (85)
138 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.3E-19 2.2E-23 127.0 6.9 87 8-95 11-98 (100)
139 2cq3_A RNA-binding protein 9; 99.8 4.9E-18 1.7E-22 122.9 11.7 86 97-184 12-98 (103)
140 3p5t_L Cleavage and polyadenyl 99.8 2.4E-19 8.2E-24 126.7 4.5 82 101-182 2-86 (90)
141 2dgv_A HnRNP M, heterogeneous 99.8 5.1E-18 1.7E-22 120.2 11.4 85 11-97 3-88 (92)
142 2hgl_A HNRPF protein, heteroge 99.8 5.9E-19 2E-23 134.0 6.9 85 10-95 38-125 (136)
143 2do0_A HnRNP M, heterogeneous 99.8 6.3E-18 2.2E-22 124.6 12.3 85 10-95 9-94 (114)
144 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.9E-18 1.3E-22 132.9 11.7 83 12-94 35-118 (156)
145 1oo0_B CG8781-PA, drosophila Y 99.8 3.8E-18 1.3E-22 125.0 10.8 86 97-182 23-109 (110)
146 2cqp_A RNA-binding protein 12; 99.8 1.3E-18 4.3E-23 124.9 8.1 86 10-95 9-95 (98)
147 3ex7_B RNA-binding protein 8A; 99.8 2.3E-18 7.8E-23 129.4 9.8 89 9-97 15-104 (126)
148 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 120.1 9.1 80 98-177 5-85 (85)
149 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.3E-18 1.8E-22 122.7 11.2 85 97-183 12-97 (103)
150 2cqc_A Arginine/serine-rich sp 99.8 3.4E-18 1.2E-22 121.8 9.9 82 97-178 12-94 (95)
151 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.4E-23 125.5 7.7 89 17-110 1-101 (101)
152 1x4c_A Splicing factor, argini 99.8 8.2E-18 2.8E-22 122.9 12.0 79 97-182 12-96 (108)
153 3n9u_C Cleavage and polyadenyl 99.8 2.9E-18 9.8E-23 133.5 10.1 81 15-95 54-137 (156)
154 2ek1_A RNA-binding protein 12; 99.8 1E-18 3.4E-23 124.6 6.9 83 11-93 10-93 (95)
155 2cpy_A RNA-binding protein 12; 99.8 2.3E-18 7.8E-23 127.1 9.0 83 97-180 12-95 (114)
156 4f25_A Polyadenylate-binding p 99.8 2.4E-18 8.3E-23 127.2 9.0 81 100-182 5-86 (115)
157 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-18 1.2E-22 124.1 9.7 85 98-183 13-101 (105)
158 2x1f_A MRNA 3'-END-processing 99.8 3.5E-18 1.2E-22 122.1 9.5 82 100-181 2-84 (96)
159 2dha_A FLJ20171 protein; RRM d 99.8 1.2E-18 4.2E-23 129.8 7.2 81 13-94 20-104 (123)
160 2lmi_A GRSF-1, G-rich sequence 99.8 8.6E-19 2.9E-23 127.9 6.2 86 9-95 4-92 (107)
161 2kt5_A RNA and export factor-b 99.8 7.9E-18 2.7E-22 126.0 11.6 86 11-97 30-116 (124)
162 1x4a_A Splicing factor, argini 99.8 5.9E-18 2E-22 123.8 10.6 82 97-181 19-101 (109)
163 2dgx_A KIAA0430 protein; RRM d 99.8 6.7E-18 2.3E-22 120.7 10.7 83 12-97 5-92 (96)
164 1wg5_A Heterogeneous nuclear r 99.8 5.3E-18 1.8E-22 123.0 10.2 82 98-180 13-95 (104)
165 1wel_A RNA-binding protein 12; 99.8 5.7E-19 1.9E-23 132.3 5.2 85 11-95 20-104 (124)
166 1x4a_A Splicing factor, argini 99.8 1.2E-17 4.2E-22 122.1 12.2 86 9-97 15-101 (109)
167 4a8x_A RNA-binding protein wit 99.8 3.1E-18 1.1E-22 120.2 8.7 82 14-95 2-85 (88)
168 2jrs_A RNA-binding protein 39; 99.8 2.4E-18 8.2E-23 125.7 8.2 86 95-180 21-107 (108)
169 1s79_A Lupus LA protein; RRM, 99.8 2.1E-18 7.3E-23 124.8 7.9 81 97-178 8-88 (103)
170 2div_A TRNA selenocysteine ass 99.7 4.1E-18 1.4E-22 122.4 9.2 84 97-180 6-95 (99)
171 2do0_A HnRNP M, heterogeneous 99.7 1.9E-17 6.7E-22 122.0 13.0 84 97-181 12-96 (114)
172 2hgl_A HNRPF protein, heteroge 99.7 1.8E-18 6.1E-23 131.3 7.3 120 59-179 2-125 (136)
173 2dis_A Unnamed protein product 99.7 4.6E-18 1.6E-22 124.4 9.3 86 12-97 4-94 (109)
174 2jwn_A Embryonic polyadenylate 99.7 4.5E-18 1.5E-22 127.4 9.2 82 15-96 35-116 (124)
175 3ns6_A Eukaryotic translation 99.7 7.7E-19 2.6E-23 126.6 4.8 81 99-179 5-93 (100)
176 1p1t_A Cleavage stimulation fa 99.7 1.4E-18 4.9E-23 125.9 6.2 84 13-96 5-89 (104)
177 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-18 4.4E-23 119.1 5.6 76 101-176 1-76 (77)
178 1sjq_A Polypyrimidine tract-bi 99.7 2.7E-18 9.2E-23 123.8 7.5 81 97-183 13-96 (105)
179 2cpi_A CCR4-NOT transcription 99.7 6.4E-18 2.2E-22 124.1 9.7 84 99-182 14-104 (111)
180 2dgx_A KIAA0430 protein; RRM d 99.7 8E-18 2.7E-22 120.3 9.9 82 98-182 7-93 (96)
181 3ucg_A Polyadenylate-binding p 99.7 7.6E-18 2.6E-22 118.5 9.6 80 100-179 6-85 (89)
182 1fj7_A Nucleolin RBD1, protein 99.7 5.6E-19 1.9E-23 127.5 3.8 87 11-98 12-98 (101)
183 2kxn_B Transformer-2 protein h 99.7 2.6E-18 9E-23 129.5 7.5 85 97-181 43-128 (129)
184 2fc8_A NCL protein; structure 99.7 1.1E-17 3.7E-22 120.9 10.4 83 97-182 12-95 (102)
185 2m2b_A RNA-binding protein 10; 99.7 2.8E-18 9.7E-23 129.8 7.6 85 11-96 18-109 (131)
186 2dgw_A Probable RNA-binding pr 99.7 1.5E-17 5.1E-22 117.6 10.9 82 97-181 7-89 (91)
187 1x4d_A Matrin 3; structural ge 99.7 7.4E-18 2.5E-22 121.3 9.2 79 98-182 13-95 (102)
188 2dgu_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 119.9 11.4 80 98-185 9-89 (103)
189 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.7E-23 132.9 5.0 84 11-96 41-124 (139)
190 2dis_A Unnamed protein product 99.7 1.5E-17 5.2E-22 121.6 11.0 85 98-182 6-95 (109)
191 2cq1_A PTB-like protein L; RRM 99.7 1.7E-17 5.8E-22 119.4 11.0 82 10-97 9-93 (101)
192 2khc_A Testis-specific RNP-typ 99.7 6.5E-18 2.2E-22 125.4 9.1 81 97-177 37-118 (118)
193 2ywk_A Putative RNA-binding pr 99.7 8E-18 2.7E-22 119.9 9.2 80 97-177 13-93 (95)
194 4a8x_A RNA-binding protein wit 99.7 6.3E-18 2.2E-22 118.6 8.5 82 99-180 3-86 (88)
195 2lea_A Serine/arginine-rich sp 99.7 2.3E-18 7.9E-23 130.9 6.7 90 9-98 40-130 (135)
196 2cq4_A RNA binding motif prote 99.7 1.8E-18 6.1E-23 127.7 5.8 84 99-182 24-107 (114)
197 3n9u_C Cleavage and polyadenyl 99.7 7.7E-18 2.6E-22 131.0 9.6 81 99-179 54-137 (156)
198 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-17 4.4E-22 127.4 10.7 83 10-92 57-140 (140)
199 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-17 7.9E-22 113.8 10.8 72 15-92 6-78 (89)
200 2mss_A Protein (musashi1); RNA 99.7 2.7E-18 9.2E-23 116.9 6.1 75 102-176 1-75 (75)
201 1x4d_A Matrin 3; structural ge 99.7 5.6E-18 1.9E-22 121.9 8.0 82 9-96 8-93 (102)
202 2cqp_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 122.2 7.4 83 97-179 12-95 (98)
203 3r27_A HnRNP L, heterogeneous 99.7 8.5E-18 2.9E-22 120.0 8.9 81 10-96 15-98 (100)
204 2xs2_A Deleted in azoospermia- 99.7 3.2E-18 1.1E-22 123.7 6.8 83 12-96 5-87 (102)
205 2ad9_A Polypyrimidine tract-bi 99.7 6.7E-18 2.3E-22 124.7 8.6 85 8-98 23-110 (119)
206 2la6_A RNA-binding protein FUS 99.7 7E-18 2.4E-22 121.2 8.4 81 97-177 10-99 (99)
207 2fc9_A NCL protein; structure 99.7 2E-17 6.7E-22 119.3 10.7 81 97-181 12-93 (101)
208 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-18 7.3E-23 117.4 5.2 75 102-176 1-75 (75)
209 2kn4_A Immunoglobulin G-bindin 99.7 1.9E-17 6.4E-22 129.2 11.1 87 11-97 65-152 (158)
210 3ulh_A THO complex subunit 4; 99.7 1.7E-17 5.9E-22 120.8 10.0 80 97-177 26-106 (107)
211 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-17 3.7E-22 118.5 8.6 83 97-181 5-88 (92)
212 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 121.9 8.9 79 100-180 16-94 (109)
213 2err_A Ataxin-2-binding protei 99.7 1.4E-17 4.6E-22 121.9 9.1 86 8-95 21-107 (109)
214 1x5o_A RNA binding motif, sing 99.7 2.3E-17 7.9E-22 121.6 10.3 83 10-93 19-110 (114)
215 2cpi_A CCR4-NOT transcription 99.7 1.4E-17 4.9E-22 122.2 9.1 86 11-96 10-102 (111)
216 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.4E-17 8.2E-22 129.6 10.9 86 12-97 68-154 (165)
217 2fc8_A NCL protein; structure 99.7 2.5E-17 8.6E-22 118.9 10.1 88 7-97 6-94 (102)
218 2fc9_A NCL protein; structure 99.7 2.4E-17 8E-22 118.9 9.8 84 10-97 9-93 (101)
219 2jwn_A Embryonic polyadenylate 99.7 2.3E-17 8E-22 123.4 10.1 83 99-181 35-117 (124)
220 2m2b_A RNA-binding protein 10; 99.7 3.8E-18 1.3E-22 129.1 5.6 85 97-182 20-111 (131)
221 1x4c_A Splicing factor, argini 99.7 5.1E-17 1.7E-21 118.6 11.4 81 10-97 9-95 (108)
222 2cq1_A PTB-like protein L; RRM 99.7 4.5E-17 1.6E-21 117.2 10.9 81 97-183 12-95 (101)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.6E-18 3.3E-22 120.8 7.3 83 97-180 16-99 (100)
224 3q2s_C Cleavage and polyadenyl 99.7 9.5E-18 3.2E-22 138.7 8.3 80 15-94 67-149 (229)
225 2ek1_A RNA-binding protein 12; 99.7 5.6E-18 1.9E-22 120.7 6.0 80 98-177 13-93 (95)
226 2hgm_A HNRPF protein, heteroge 99.7 8.1E-18 2.8E-22 125.7 7.1 80 98-179 40-121 (126)
227 2lcw_A RNA-binding protein FUS 99.6 4.1E-19 1.4E-23 131.5 0.0 86 97-182 4-98 (116)
228 1wex_A Hypothetical protein (r 99.7 5.6E-17 1.9E-21 117.4 11.1 80 11-96 10-92 (104)
229 1p1t_A Cleavage stimulation fa 99.7 5.2E-18 1.8E-22 123.0 5.6 83 99-181 7-90 (104)
230 2db1_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 123.3 8.4 82 98-180 15-99 (118)
231 2nlw_A Eukaryotic translation 99.7 2.2E-17 7.5E-22 120.0 8.8 83 11-95 10-100 (105)
232 2dnq_A RNA-binding protein 4B; 99.7 2.4E-17 8.1E-22 116.3 8.6 79 97-183 5-84 (90)
233 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.4E-22 115.1 6.8 72 100-177 7-79 (89)
234 2dgt_A RNA-binding protein 30; 99.7 5.6E-17 1.9E-21 114.9 10.4 78 97-182 7-85 (92)
235 2ytc_A PRE-mRNA-splicing facto 99.7 9E-17 3.1E-21 112.0 11.1 78 9-92 5-84 (85)
236 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-17 6.4E-22 121.2 7.8 80 98-181 26-107 (111)
237 2ki2_A SS-DNA binding protein 99.7 6.5E-18 2.2E-22 119.2 5.0 79 17-96 2-81 (90)
238 2dnq_A RNA-binding protein 4B; 99.7 7.2E-17 2.5E-21 113.8 10.3 79 11-97 3-82 (90)
239 2ad9_A Polypyrimidine tract-bi 99.7 2.4E-17 8.4E-22 121.7 8.2 81 97-183 28-111 (119)
240 2e5g_A U6 snRNA-specific termi 99.7 1.1E-16 3.9E-21 113.7 11.4 81 12-97 4-84 (94)
241 2xs2_A Deleted in azoospermia- 99.7 2.7E-17 9.1E-22 118.8 8.1 83 98-182 7-89 (102)
242 3r27_A HnRNP L, heterogeneous 99.7 3.2E-17 1.1E-21 117.0 8.2 78 97-180 18-98 (100)
243 2krb_A Eukaryotic translation 99.7 2.2E-17 7.6E-22 114.1 7.2 72 16-89 1-80 (81)
244 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-17 3.9E-22 124.6 6.0 81 98-179 21-105 (123)
245 1x4g_A Nucleolysin TIAR; struc 99.7 3.3E-17 1.1E-21 119.9 8.2 82 96-183 21-103 (109)
246 2ki2_A SS-DNA binding protein 99.7 6.5E-18 2.2E-22 119.2 4.2 81 101-182 2-83 (90)
247 2dgt_A RNA-binding protein 30; 99.7 1.2E-16 4.1E-21 113.1 10.8 82 8-97 2-84 (92)
248 1why_A Hypothetical protein ri 99.7 1.1E-16 3.8E-21 114.4 10.7 80 11-96 12-94 (97)
249 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8.3E-17 2.8E-21 122.9 10.6 80 97-176 60-140 (140)
250 2a3j_A U1 small nuclear ribonu 99.7 5.9E-17 2E-21 121.5 9.4 83 10-95 23-110 (127)
251 1wex_A Hypothetical protein (r 99.7 4.9E-17 1.7E-21 117.7 8.6 81 97-183 12-95 (104)
252 2f3j_A RNA and export factor b 99.7 6.4E-17 2.2E-21 128.5 10.1 84 12-96 84-168 (177)
253 3beg_B Splicing factor, argini 99.7 2.5E-17 8.6E-22 121.7 7.1 74 98-178 14-93 (115)
254 2kt5_A RNA and export factor-b 99.7 8.1E-17 2.8E-21 120.5 10.0 85 97-182 32-117 (124)
255 1fjc_A Nucleolin RBD2, protein 99.7 4.5E-17 1.5E-21 116.3 8.2 85 92-181 8-93 (96)
256 2nlw_A Eukaryotic translation 99.7 4.3E-17 1.5E-21 118.4 8.1 82 97-180 12-101 (105)
257 2la4_A Nuclear and cytoplasmic 99.7 1.2E-16 4.3E-21 115.0 10.4 77 12-94 23-100 (101)
258 1x4e_A RNA binding motif, sing 99.7 7.5E-18 2.6E-22 117.6 3.8 77 98-174 3-80 (85)
259 2err_A Ataxin-2-binding protei 99.7 4.1E-17 1.4E-21 119.4 7.9 82 97-180 26-108 (109)
260 2dnl_A Cytoplasmic polyadenyla 99.7 5.4E-17 1.8E-21 119.7 8.5 81 11-93 3-86 (114)
261 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 125.0 5.2 83 98-180 23-105 (124)
262 1wf1_A RNA-binding protein RAL 99.7 7.3E-17 2.5E-21 118.2 9.1 90 83-180 6-101 (110)
263 2cpx_A Hypothetical protein FL 99.7 9.6E-18 3.3E-22 123.8 4.4 87 98-184 23-110 (115)
264 2cpj_A Non-POU domain-containi 99.7 1E-16 3.5E-21 115.1 9.6 82 9-96 8-90 (99)
265 2dnp_A RNA-binding protein 14; 99.7 1.2E-16 4E-21 112.7 9.6 78 97-182 6-84 (90)
266 2cpj_A Non-POU domain-containi 99.7 6E-17 2.1E-21 116.3 8.2 81 97-183 12-93 (99)
267 2dnp_A RNA-binding protein 14; 99.7 1.7E-16 5.7E-21 111.9 10.2 80 10-97 3-83 (90)
268 1x5o_A RNA binding motif, sing 99.7 7.5E-17 2.6E-21 118.8 8.6 82 97-179 22-112 (114)
269 2lcw_A RNA-binding protein FUS 99.5 1.9E-18 6.7E-23 127.9 0.0 86 12-97 3-97 (116)
270 1x4g_A Nucleolysin TIAR; struc 99.7 1.9E-16 6.6E-21 115.7 10.6 80 12-97 21-101 (109)
271 2cpx_A Hypothetical protein FL 99.7 2.2E-17 7.7E-22 121.8 5.6 85 13-97 22-107 (115)
272 2dgu_A Heterogeneous nuclear r 99.7 2.2E-16 7.5E-21 114.2 10.7 80 10-97 5-85 (103)
273 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4.2E-21 114.3 9.2 82 10-96 13-95 (97)
274 3d2w_A TAR DNA-binding protein 99.7 5.5E-17 1.9E-21 114.2 7.3 80 12-97 7-86 (89)
275 2cpd_A Apobec-1 stimulating pr 99.7 2.3E-16 7.8E-21 113.2 10.7 77 97-181 12-91 (99)
276 1why_A Hypothetical protein ri 99.7 7.9E-17 2.7E-21 115.2 8.1 78 98-181 15-95 (97)
277 1fj7_A Nucleolin RBD1, protein 99.7 5.5E-18 1.9E-22 122.2 1.9 83 98-182 15-98 (101)
278 1wf0_A TDP-43, TAR DNA-binding 99.7 7.2E-17 2.5E-21 113.3 7.7 78 99-182 4-81 (88)
279 2hvz_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 116.3 7.8 77 101-182 1-78 (101)
280 2jvr_A Nucleolar protein 3; RN 99.7 8.9E-17 3E-21 117.6 8.1 80 12-95 24-105 (111)
281 1x4f_A Matrin 3; structural ge 99.7 6.7E-17 2.3E-21 118.0 7.3 80 11-96 20-103 (112)
282 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-17 7.1E-22 120.5 4.6 83 97-180 8-93 (107)
283 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-16 8.3E-21 109.8 9.8 76 96-177 8-85 (85)
284 2cpd_A Apobec-1 stimulating pr 99.7 5.4E-16 1.8E-20 111.3 11.7 81 9-97 8-91 (99)
285 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 127.4 10.4 84 14-97 102-185 (196)
286 1nu4_A U1A RNA binding domain; 99.7 7.2E-17 2.5E-21 115.4 7.0 83 11-96 3-90 (97)
287 1x4f_A Matrin 3; structural ge 99.7 8.4E-17 2.9E-21 117.5 7.3 81 97-183 22-106 (112)
288 2cqh_A IGF-II mRNA-binding pro 99.7 8.5E-17 2.9E-21 114.1 7.0 78 98-182 6-86 (93)
289 1fjc_A Nucleolin RBD2, protein 99.7 7.2E-17 2.5E-21 115.2 6.7 83 9-96 9-92 (96)
290 1wf1_A RNA-binding protein RAL 99.7 4.5E-16 1.5E-20 113.9 11.1 76 13-96 24-101 (110)
291 3d2w_A TAR DNA-binding protein 99.7 2.7E-16 9.1E-21 110.7 9.2 79 97-181 8-86 (89)
292 2krb_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 112.1 5.5 71 101-173 2-80 (81)
293 2e5g_A U6 snRNA-specific termi 99.7 4.6E-16 1.6E-20 110.5 10.4 79 98-182 6-85 (94)
294 2jvo_A Nucleolar protein 3; nu 99.7 3.1E-16 1.1E-20 114.4 9.7 79 10-96 25-104 (108)
295 1wf0_A TDP-43, TAR DNA-binding 99.7 7.6E-17 2.6E-21 113.2 6.0 79 13-97 2-80 (88)
296 2voo_A Lupus LA protein; RNA-b 99.7 8.2E-16 2.8E-20 123.8 12.8 112 67-179 63-187 (193)
297 2kvi_A Nuclear polyadenylated 99.7 2.2E-16 7.4E-21 112.7 8.0 79 11-97 5-85 (96)
298 3md3_A Nuclear and cytoplasmic 99.7 7.2E-16 2.5E-20 120.5 11.7 84 10-93 81-165 (166)
299 3pgw_S U1-70K; protein-RNA com 99.7 3.3E-16 1.1E-20 141.1 11.1 85 11-95 97-182 (437)
300 2a3j_A U1 small nuclear ribonu 99.7 2.2E-16 7.5E-21 118.3 8.2 82 97-181 26-112 (127)
301 2xnq_A Nuclear polyadenylated 99.7 6.2E-16 2.1E-20 110.6 10.2 78 10-95 16-95 (97)
302 2e44_A Insulin-like growth fac 99.7 3.7E-16 1.3E-20 111.4 9.0 81 11-95 10-92 (96)
303 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.5E-21 114.5 6.0 78 97-182 7-86 (96)
304 2cqh_A IGF-II mRNA-binding pro 99.7 2.5E-16 8.4E-21 111.7 7.8 79 12-97 4-85 (93)
305 2dnl_A Cytoplasmic polyadenyla 99.6 3.2E-16 1.1E-20 115.5 8.0 77 98-176 6-85 (114)
306 1whx_A Hypothetical protein ri 99.6 1.8E-16 6E-21 116.3 6.5 77 12-94 6-83 (111)
307 1x5p_A Negative elongation fac 99.6 2.1E-15 7.1E-20 107.8 12.0 82 8-97 7-89 (97)
308 2i2y_A Fusion protein consists 99.6 4.7E-16 1.6E-20 120.2 9.2 81 10-95 67-148 (150)
309 2j8a_A Histone-lysine N-methyl 99.6 3.6E-16 1.2E-20 115.0 7.9 77 17-93 3-94 (136)
310 2cjk_A Nuclear polyadenylated 99.6 1.6E-16 5.6E-21 124.5 6.6 82 14-95 85-166 (167)
311 4f02_A Polyadenylate-binding p 99.6 5.7E-16 1.9E-20 126.8 10.0 81 99-179 14-95 (213)
312 1x5p_A Negative elongation fac 99.6 1.6E-15 5.6E-20 108.3 10.9 79 97-183 12-91 (97)
313 2e5j_A Methenyltetrahydrofolat 99.6 1.7E-16 5.7E-21 113.5 5.7 80 97-181 16-96 (97)
314 2f3j_A RNA and export factor b 99.6 3.5E-16 1.2E-20 124.2 8.0 83 98-181 86-169 (177)
315 2jvo_A Nucleolar protein 3; nu 99.6 3.7E-16 1.3E-20 114.0 7.4 77 97-181 28-105 (108)
316 2cq2_A Hypothetical protein LO 99.6 5E-16 1.7E-20 113.5 8.0 81 98-184 23-111 (114)
317 1wg1_A KIAA1579 protein, homol 99.6 5E-16 1.7E-20 109.0 7.8 75 13-94 2-77 (88)
318 2hzc_A Splicing factor U2AF 65 99.6 6.3E-16 2.2E-20 108.1 8.3 73 13-91 3-86 (87)
319 2g4b_A Splicing factor U2AF 65 99.6 1.4E-15 4.7E-20 119.8 11.0 81 12-92 90-171 (172)
320 2voo_A Lupus LA protein; RNA-b 99.6 1E-15 3.5E-20 123.2 10.1 79 16-95 109-187 (193)
321 2la4_A Nuclear and cytoplasmic 99.6 2.3E-16 8E-21 113.6 5.7 76 98-179 25-101 (101)
322 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 112.0 6.3 82 97-181 5-91 (97)
323 1whx_A Hypothetical protein ri 99.6 6E-16 2E-20 113.5 7.9 76 99-180 9-85 (111)
324 2yh0_A Splicing factor U2AF 65 99.6 2.2E-15 7.7E-20 121.3 11.7 84 13-96 111-195 (198)
325 2xnq_A Nuclear polyadenylated 99.6 1.5E-15 5E-20 108.6 9.3 75 97-179 19-95 (97)
326 3beg_B Splicing factor, argini 99.6 4.8E-16 1.6E-20 114.7 6.9 71 13-90 13-84 (115)
327 2qfj_A FBP-interacting repress 99.6 1.6E-15 5.4E-20 123.9 10.7 84 14-97 123-207 (216)
328 2j8a_A Histone-lysine N-methyl 99.6 6.5E-16 2.2E-20 113.7 7.4 76 101-176 3-93 (136)
329 1fxl_A Paraneoplastic encephal 99.6 1.7E-15 6E-20 118.4 9.9 82 100-181 2-84 (167)
330 3egn_A RNA-binding protein 40; 99.6 2.1E-16 7.1E-21 121.3 4.2 84 12-95 41-130 (143)
331 2e44_A Insulin-like growth fac 99.6 8.7E-16 3E-20 109.5 7.0 79 98-180 13-93 (96)
332 1b7f_A Protein (SXL-lethal pro 99.6 1.5E-15 5.2E-20 119.0 9.0 83 99-181 2-85 (168)
333 3lqv_A PRE-mRNA branch site pr 99.6 8.8E-16 3E-20 113.2 7.0 80 98-180 6-86 (115)
334 1wg1_A KIAA1579 protein, homol 99.6 2E-15 6.7E-20 105.9 8.3 75 99-180 4-79 (88)
335 2cq2_A Hypothetical protein LO 99.6 2E-15 6.7E-20 110.3 8.6 78 10-93 19-104 (114)
336 1sjr_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 115.6 8.4 79 99-181 45-126 (164)
337 1sjr_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 113.9 9.9 80 12-95 42-124 (164)
338 3egn_A RNA-binding protein 40; 99.6 5.1E-16 1.7E-20 119.1 3.3 86 97-182 42-133 (143)
339 2hzc_A Splicing factor U2AF 65 99.6 9.5E-15 3.3E-19 102.0 8.5 71 98-175 4-86 (87)
340 2pe8_A Splicing factor 45; RRM 99.6 1.7E-14 5.7E-19 104.5 9.9 82 13-94 5-93 (105)
341 2bz2_A Negative elongation fac 99.6 1E-14 3.4E-19 108.5 8.4 78 11-96 34-112 (121)
342 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-14 4.6E-19 108.3 8.9 77 99-180 27-107 (130)
343 2diu_A KIAA0430 protein; struc 99.5 2E-14 6.8E-19 100.1 8.8 75 13-97 5-86 (96)
344 3zzy_A Polypyrimidine tract-bi 99.5 2.7E-14 9.2E-19 106.7 9.7 80 11-95 23-106 (130)
345 2e5i_A Heterogeneous nuclear r 99.5 5.8E-14 2E-18 104.3 10.9 73 17-95 26-102 (124)
346 2e5i_A Heterogeneous nuclear r 99.5 2.1E-14 7.1E-19 106.7 8.2 75 100-180 25-103 (124)
347 2diu_A KIAA0430 protein; struc 99.5 1.1E-14 3.7E-19 101.4 6.0 71 102-182 11-87 (96)
348 3nmr_A Cugbp ELAV-like family 99.5 2.4E-14 8.2E-19 112.8 8.9 80 12-92 91-174 (175)
349 3tyt_A Heterogeneous nuclear r 99.5 2.5E-14 8.4E-19 116.3 8.7 77 99-180 3-81 (205)
350 2pe8_A Splicing factor 45; RRM 99.5 5.1E-14 1.7E-18 101.9 9.3 81 98-178 6-93 (105)
351 1fje_B Nucleolin RBD12, protei 99.5 3.2E-14 1.1E-18 112.3 8.9 80 11-95 94-174 (175)
352 3u1l_A PRE-mRNA-splicing facto 99.5 2E-14 7E-19 118.5 7.9 104 73-182 102-232 (240)
353 2bz2_A Negative elongation fac 99.5 1.7E-14 5.7E-19 107.3 6.0 77 98-182 37-114 (121)
354 3u1l_A PRE-mRNA-splicing facto 99.5 3.7E-14 1.3E-18 117.0 8.0 81 11-97 129-231 (240)
355 3pgw_A U1-A; protein-RNA compl 99.5 1.1E-13 3.7E-18 117.8 10.4 82 97-181 6-92 (282)
356 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.7E-13 9.2E-18 97.0 10.1 69 110-184 27-95 (100)
357 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.1E-13 1.7E-17 95.5 11.4 78 13-96 7-91 (100)
358 2dit_A HIV TAT specific factor 99.5 3.6E-13 1.2E-17 98.7 10.0 82 97-182 12-105 (112)
359 2dit_A HIV TAT specific factor 99.4 5.1E-13 1.7E-17 97.9 10.1 82 11-96 10-103 (112)
360 2adc_A Polypyrimidine tract-bi 99.4 1.6E-13 5.6E-18 113.3 7.0 79 97-180 31-111 (229)
361 3sde_A Paraspeckle component 1 99.4 3E-13 1E-17 113.9 8.7 82 14-96 94-180 (261)
362 3v4m_A Splicing factor U2AF 65 99.4 4.3E-13 1.5E-17 97.0 7.9 81 14-94 3-96 (105)
363 1qm9_A Polypyrimidine tract-bi 99.4 1E-12 3.4E-17 105.9 9.6 76 14-94 118-196 (198)
364 3v4m_A Splicing factor U2AF 65 99.4 6.9E-13 2.4E-17 95.9 7.7 81 99-179 4-97 (105)
365 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.5E-18 98.1 4.3 71 21-92 20-103 (104)
366 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.1E-18 98.5 3.7 71 105-176 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.1E-17 96.5 7.8 80 15-94 19-108 (118)
368 3ue2_A Poly(U)-binding-splicin 99.3 2.2E-12 7.5E-17 95.1 7.6 80 99-178 19-108 (118)
369 3tht_A Alkylated DNA repair pr 99.3 8.6E-12 2.9E-16 108.2 8.4 69 8-82 10-81 (345)
370 3tht_A Alkylated DNA repair pr 99.2 1.9E-11 6.6E-16 106.0 8.6 74 97-176 15-96 (345)
371 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 4.3E-15 85.1 9.0 77 13-93 4-91 (114)
372 1owx_A Lupus LA protein, SS-B, 99.2 7.2E-11 2.5E-15 86.7 7.3 76 97-178 15-95 (121)
373 3s6e_A RNA-binding protein 39; 99.1 1E-10 3.6E-15 85.5 5.7 76 100-179 7-93 (114)
374 1owx_A Lupus LA protein, SS-B, 99.1 3.8E-10 1.3E-14 82.8 7.5 74 11-90 13-91 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 1.7E-09 5.9E-14 74.5 8.2 73 99-179 6-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.4E-09 4.7E-14 75.0 6.7 73 14-94 5-85 (91)
377 2dhx_A Poly (ADP-ribose) polym 98.8 3.5E-08 1.2E-12 69.1 10.5 91 12-113 4-99 (104)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 6.1E-09 2.1E-13 72.1 6.2 75 11-93 10-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 8.7E-09 3E-13 71.3 4.4 73 97-177 12-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 6.6E-08 2.3E-12 79.0 9.6 79 15-93 123-211 (222)
381 3dxb_A Thioredoxin N-terminall 98.7 3.7E-08 1.2E-12 80.6 6.8 67 112-178 141-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.4 2.9E-06 9.8E-11 60.0 9.6 74 12-91 17-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.3 1.4E-06 4.8E-11 61.5 6.9 72 98-175 19-96 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.2 1.1E-05 3.6E-10 56.6 9.3 74 98-179 6-84 (104)
385 1whv_A Poly(A)-specific ribonu 98.1 1.7E-05 5.9E-10 54.8 7.8 55 14-77 14-68 (100)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00012 3.9E-09 53.0 7.7 78 7-91 15-93 (119)
387 3ctr_A Poly(A)-specific ribonu 97.7 7E-05 2.4E-09 52.0 5.5 52 17-77 7-58 (101)
388 1wey_A Calcipressin 1; structu 97.5 0.00039 1.3E-08 48.8 7.8 74 14-93 3-82 (104)
389 1uw4_A UPF3X; nonsense mediate 97.4 0.00075 2.6E-08 46.5 8.1 61 17-77 2-64 (91)
390 1wey_A Calcipressin 1; structu 97.3 0.00071 2.4E-08 47.5 6.6 75 100-180 5-85 (104)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.0019 6.5E-08 46.6 8.6 72 99-177 23-95 (119)
392 1whv_A Poly(A)-specific ribonu 97.2 0.00045 1.5E-08 47.7 4.9 54 100-162 16-69 (100)
393 3ctr_A Poly(A)-specific ribonu 96.9 0.00073 2.5E-08 46.8 3.8 52 101-161 7-58 (101)
394 2l08_A Regulator of nonsense t 96.6 0.003 1E-07 43.8 4.9 63 15-77 8-72 (97)
395 3pq1_A Poly(A) RNA polymerase; 96.5 0.0012 4.1E-08 59.2 3.2 58 15-78 52-109 (464)
396 1uw4_A UPF3X; nonsense mediate 96.5 0.0079 2.7E-07 41.4 6.4 62 101-162 2-65 (91)
397 3p3d_A Nucleoporin 53; structu 96.2 0.0076 2.6E-07 44.1 5.2 78 100-178 7-98 (132)
398 3p3d_A Nucleoporin 53; structu 96.1 0.0067 2.3E-07 44.4 4.6 78 14-92 5-96 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.6 0.0053 1.8E-07 55.0 2.5 60 97-162 50-109 (464)
400 2l08_A Regulator of nonsense t 95.5 0.033 1.1E-06 38.6 5.8 64 100-163 9-74 (97)
401 3d45_A Poly(A)-specific ribonu 93.3 0.26 8.9E-06 44.8 8.1 54 15-77 439-492 (507)
402 3d45_A Poly(A)-specific ribonu 85.4 2.1 7.3E-05 38.8 7.4 54 100-162 440-493 (507)
403 4eyt_A Telomerase associated p 83.7 3.7 0.00013 27.6 6.0 57 98-162 10-66 (129)
404 4eyt_A Telomerase associated p 74.7 16 0.00056 24.4 7.4 57 13-77 9-65 (129)
405 2g0c_A ATP-dependent RNA helic 58.5 30 0.001 21.9 5.9 66 18-92 2-74 (76)
406 3lpe_A Putative transcription 56.2 42 0.0014 22.4 8.2 30 43-77 40-69 (92)
407 2cu1_A Mitogen-activated prote 47.6 13 0.00044 25.5 2.5 61 21-89 21-82 (103)
408 1ywx_A 30S ribosomal protein S 45.4 57 0.002 22.4 5.7 48 26-74 28-80 (102)
409 1xn9_A 30S ribosomal protein S 45.3 60 0.0021 22.2 5.8 50 25-75 27-81 (101)
410 2v94_A RPS24, 30S ribosomal pr 44.5 60 0.002 22.5 5.7 48 26-74 37-89 (107)
411 2g1d_A 30S ribosomal protein S 43.8 14 0.00049 25.2 2.4 48 26-74 29-81 (98)
412 2cu1_A Mitogen-activated prote 42.3 45 0.0016 22.8 4.6 59 107-173 23-84 (103)
413 3j21_T 50S ribosomal protein L 41.5 75 0.0026 21.0 6.3 56 19-77 25-82 (86)
414 4e8u_A Putative uncharacterize 41.1 56 0.0019 24.8 5.5 47 102-151 14-71 (172)
415 2npt_B Mitogen-activated prote 40.8 46 0.0016 22.5 4.4 53 21-81 33-86 (100)
416 2jrh_A Mitogen-activated prote 39.2 44 0.0015 22.3 4.0 61 21-89 17-78 (94)
417 3ts2_A Protein LIN-28 homolog 37.9 8.8 0.0003 28.5 0.6 28 115-150 2-29 (148)
418 4e8u_A Putative uncharacterize 36.1 64 0.0022 24.5 5.1 56 18-76 14-81 (172)
419 2c60_A Human mitogen-activated 35.8 40 0.0014 23.1 3.5 53 21-81 44-97 (111)
420 3tbg_A Cytochrome P450 2D6; mo 34.8 15 0.00052 32.0 1.8 57 19-84 19-78 (479)
421 3u5c_Y RP50, 40S ribosomal pro 33.6 1.3E+02 0.0043 21.8 6.2 48 26-74 33-85 (135)
422 3fry_A Probable copper-exporti 33.3 82 0.0028 19.1 6.2 58 15-79 5-62 (73)
423 2lfv_A Protein DAMX; cell divi 39.4 9 0.00031 26.7 0.0 54 112-167 34-89 (106)
424 2qyc_A Ferredoxin-like protein 32.2 1.1E+02 0.0039 20.4 6.7 54 19-73 8-71 (103)
425 3e6i_A CYPIIE1, P450-J, cytoch 31.5 45 0.0015 28.9 4.3 61 13-82 13-76 (476)
426 2xzm_P RPS24E; ribosome, trans 30.7 1E+02 0.0035 22.7 5.3 48 26-74 31-83 (149)
427 3h7h_B Transcription elongatio 29.5 61 0.0021 22.4 3.8 34 43-81 41-74 (106)
428 3bb5_A Stress responsive alpha 28.4 1.5E+02 0.0052 20.6 7.3 60 16-75 21-91 (121)
429 1q4r_A Protein AT3G17210; cent 27.6 1.5E+02 0.005 20.2 6.9 60 16-75 11-81 (112)
430 1tr0_A Stable protein 1; plant 27.3 1.4E+02 0.0049 20.0 7.0 59 16-74 9-80 (108)
431 3bgu_A Ferredoxin-like protein 26.8 1.6E+02 0.0054 20.3 6.7 59 16-75 22-90 (116)
432 1fme_A FSD-EY peptide; beta-BE 25.3 45 0.0016 16.3 1.7 12 29-40 14-25 (28)
433 2i9x_A Putative septation prot 24.0 1.1E+02 0.0039 20.2 4.2 26 126-151 5-30 (87)
434 4a8j_B Elongator complex prote 23.9 1.5E+02 0.0052 24.1 5.6 48 17-64 167-222 (270)
435 3fut_A Dimethyladenosine trans 23.0 75 0.0026 25.9 3.9 32 16-48 110-141 (271)
436 1vq8_S 50S ribosomal protein L 23.0 1.7E+02 0.0057 19.3 5.9 54 20-76 25-80 (85)
437 3swz_A Steroid 17-alpha-hydrox 22.6 73 0.0025 27.8 4.0 61 16-85 14-78 (494)
438 1x8d_A Hypothetical protein YI 20.5 2.1E+02 0.0071 19.5 5.2 34 31-67 27-60 (104)
439 2rf4_B DNA-directed RNA polyme 20.3 83 0.0028 20.8 2.8 28 13-40 16-43 (87)
440 2ia9_A Putative septation prot 20.3 1.4E+02 0.0049 20.3 4.2 26 126-151 5-30 (100)
441 2lsl_A Telomerase associated p 25.4 22 0.00075 24.0 0.0 21 142-162 77-97 (137)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.2e-38 Score=256.90 Aligned_cols=178 Identities=31% Similarity=0.615 Sum_probs=155.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
....++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+.++..+.++.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 34456678899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cccccccccCC-------CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHh
Q psy1314 88 DPKRVTKRVNP-------LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160 (275)
Q Consensus 88 ~v~~~~~~~~~-------~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~ 160 (275)
.+.++...... ..++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 99987654322 34789999999999999999999999999999999999899999999999999999999999
Q ss_pred cCCceeCCeEEEEEEeeeCCCCCCC
Q psy1314 161 NPKQVICGKEVDVKRVKFNPETMGS 185 (275)
Q Consensus 161 ~~~~~~~g~~i~v~~~~~~~~~~~~ 185 (275)
.++..|+|+.|.|.++.++.+....
T Consensus 165 ~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 165 QKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp CSCCEETTEECEEEECC--------
T ss_pred hCCcEECCEEEEEEecCChhHhccc
Confidence 8889999999999999998776543
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.8e-36 Score=248.23 Aligned_cols=167 Identities=26% Similarity=0.383 Sum_probs=149.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.|++++|||||+|.+.++|++||+. +...+.++.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999975 57789999998887
Q ss_pred cccccC---CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 92 VTKRVN---PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 92 ~~~~~~---~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
+..... ....+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.| +..|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 754432 234789999999999999999999999999999999885 347999999999999999999987 58999
Q ss_pred CeEEEEEEeeeCCC
Q psy1314 168 GKEVDVKRVKFNPE 181 (275)
Q Consensus 168 g~~i~v~~~~~~~~ 181 (275)
|++|.|.++.++.+
T Consensus 170 g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 170 DRKVFVGRFKSRKE 183 (213)
T ss_dssp TEECEEEECCCHHH
T ss_pred CEEEEEEEcCCCcc
Confidence 99999999987654
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.1e-36 Score=240.79 Aligned_cols=166 Identities=33% Similarity=0.683 Sum_probs=152.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
.++++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+. .+.+.++.|.+.++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 3678999999999999999999999999999999999999999999999999999999999995 578999999998876
Q ss_pred cccC-CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEE
Q psy1314 94 KRVN-PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVD 172 (275)
Q Consensus 94 ~~~~-~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~ 172 (275)
++.. ....+|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++..+..+.|++|.
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 159 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIE 159 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEE
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEE
Confidence 5433 345789999999999999999999999999999999998899999999999999999999999545889999999
Q ss_pred EEEeeeCC
Q psy1314 173 VKRVKFNP 180 (275)
Q Consensus 173 v~~~~~~~ 180 (275)
|.++.+++
T Consensus 160 V~~a~pk~ 167 (167)
T 2cjk_A 160 IKRAEPRH 167 (167)
T ss_dssp EEECCCCC
T ss_pred EeecCCCC
Confidence 99998763
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.1e-35 Score=241.13 Aligned_cols=170 Identities=21% Similarity=0.408 Sum_probs=152.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
.+.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346799999999999999999999999999999999998899999999999999999999999 5788999999999877
Q ss_pred ccccC------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHh
Q psy1314 93 TKRVN------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160 (275)
Q Consensus 93 ~~~~~------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~ 160 (275)
..... ...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 55432 334799999999999999999999999999999999999899999999999999999999999
Q ss_pred cC-CceeCCeEEEEEEeeeCCCCC
Q psy1314 161 NP-KQVICGKEVDVKRVKFNPETM 183 (275)
Q Consensus 161 ~~-~~~~~g~~i~v~~~~~~~~~~ 183 (275)
.+ +..|.|++|.|.++..++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HccCCEeCCcEEEEEEecCCCCCC
Confidence 87 588999999999999876543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.2e-35 Score=231.14 Aligned_cols=162 Identities=21% Similarity=0.383 Sum_probs=150.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~ 93 (275)
+.++|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+.+++|.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999997 57889999999999887
Q ss_pred cccCC-CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCC--e
Q psy1314 94 KRVNP-LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICG--K 169 (275)
Q Consensus 94 ~~~~~-~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g--~ 169 (275)
+.... ..++|+|+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|.+|++.+ +..+.| +
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 65443 4688999999999999999999999999999999999888999999999999999999999987 578877 9
Q ss_pred EEEEEEe
Q psy1314 170 EVDVKRV 176 (275)
Q Consensus 170 ~i~v~~~ 176 (275)
+|.|.+|
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=228.01 Aligned_cols=160 Identities=21% Similarity=0.393 Sum_probs=147.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHH-HhCCceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLL-AAGDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al-~~~~~~~~g~~i~v~~~~~~ 95 (275)
++|||+|||.++|+++|+++|++||+|.+|.++.++ +++++|||||+|.+.++|++|+ .+++..+.++.|.+.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 4779999999999999999999 56788999999999887655
Q ss_pred c---CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 96 V---NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 96 ~---~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
. ....++|+|+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|++.+ +..+.|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 3 334688999999999999999999999999999999999999999999999999999999999977 589999999
Q ss_pred EEEEee
Q psy1314 172 DVKRVK 177 (275)
Q Consensus 172 ~v~~~~ 177 (275)
.|.+++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999885
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.5e-34 Score=228.10 Aligned_cols=162 Identities=26% Similarity=0.426 Sum_probs=148.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~ 93 (275)
++++|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+.+++|.+.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999998 57889999999999887
Q ss_pred cccC-CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeE-
Q psy1314 94 KRVN-PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKE- 170 (275)
Q Consensus 94 ~~~~-~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~- 170 (275)
+... ...++|+|+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|++.+ +..+.|+.
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 5543 34578999999999999999999999999999999999889999999999999999999999987 58888865
Q ss_pred -EEEEEe
Q psy1314 171 -VDVKRV 176 (275)
Q Consensus 171 -i~v~~~ 176 (275)
|.|.+|
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 777664
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.3e-33 Score=224.49 Aligned_cols=163 Identities=28% Similarity=0.442 Sum_probs=140.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCC--CcccEEEEEEccHHHHHHHHHh-CCceec---Ceee
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTG--QSRGFAFVTFTTQKAVDDLLAA-GDHYIG---NKKI 87 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg--~~~G~afV~f~~~e~a~~al~~-~~~~~~---g~~i 87 (275)
+++++|||+|||+++|+++|+++|++||+|.+|.|++++.++ +++|||||+|.+.++|++|++. ++..+. .+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999999999998887 8999999999999999999985 444444 4555
Q ss_pred cccccccccC--CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c
Q psy1314 88 DPKRVTKRVN--PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q 164 (275)
Q Consensus 88 ~v~~~~~~~~--~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~ 164 (275)
.+.++..... ...++|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|++|++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 5555544332 256889999999999999999999999999999999885 58899999999999999999999875 5
Q ss_pred eeC---CeEEEEEEee
Q psy1314 165 VIC---GKEVDVKRVK 177 (275)
Q Consensus 165 ~~~---g~~i~v~~~~ 177 (275)
.+. +++|.|.+++
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 555 4999999874
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=5.7e-34 Score=226.95 Aligned_cols=165 Identities=20% Similarity=0.291 Sum_probs=145.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
..++.+.++|||+|||.++|+++|+++|++||.+.. .++.+..+++++|||||+|.+.++|++||++++..+.+++|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 356788999999999999999999999999998766 3444556788999999999999999999988889999999999
Q ss_pred cccccccC---CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ce
Q psy1314 90 KRVTKRVN---PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QV 165 (275)
Q Consensus 90 ~~~~~~~~---~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~ 165 (275)
.++..+.. ...++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.++ ..
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 99876533 346899999999999999999999999988766 4567889999999999999999999874 89
Q ss_pred eCCeEEEEEEeeeCC
Q psy1314 166 ICGKEVDVKRVKFNP 180 (275)
Q Consensus 166 ~~g~~i~v~~~~~~~ 180 (275)
|.|++|.|.++.+++
T Consensus 161 ~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 161 IDGRSVSLYYTGEKG 175 (175)
T ss_dssp ETTEEEEEEECSSCC
T ss_pred ECCeEEEEEecCCCC
Confidence 999999999998764
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=8.3e-33 Score=219.40 Aligned_cols=157 Identities=24% Similarity=0.491 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCcee
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYI 82 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~ 82 (275)
.+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.++++|++|+++++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 367899999999999999999999999 6 6777777543 7899999999999999997788899
Q ss_pred cCeeecccccccccC-CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 83 GNKKIDPKRVTKRVN-PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 83 ~g~~i~v~~~~~~~~-~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
.+++|.+.++..... ...++|+|+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|++.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999999998765533 3358899999999999999999999999999999999988999999999999999999999998
Q ss_pred C-CceeCCeEEEEEEe
Q psy1314 162 P-KQVICGKEVDVKRV 176 (275)
Q Consensus 162 ~-~~~~~g~~i~v~~~ 176 (275)
+ +..+.|++|.|.+|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 6 58999999999986
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.6e-32 Score=221.36 Aligned_cols=162 Identities=23% Similarity=0.455 Sum_probs=143.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCcee
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYI 82 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~ 82 (275)
..+++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|++||++++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357899999999999999999999999 5 55566554 457999999999999999997788899
Q ss_pred cCeeecccccccccC---------------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCe
Q psy1314 83 GNKKIDPKRVTKRVN---------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMK 141 (275)
Q Consensus 83 ~g~~i~v~~~~~~~~---------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~ 141 (275)
.+++|.|.++..... ...++|||+|||..+++++|+++|++||.|..|.++.++.++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999998765421 34589999999999999999999999999999999999889999
Q ss_pred eeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeCCC
Q psy1314 142 KGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 142 ~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~~~ 181 (275)
+|||||+|.+.++|++|++.+ +..|.|++|.|.++.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999986 5899999999999987653
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=2e-31 Score=228.37 Aligned_cols=167 Identities=16% Similarity=0.216 Sum_probs=153.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
...++|||+|||+++|+++|+++|++||+|.++.++.++.+++++|||||+|.+.++|.+|++ +++..+.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999999999995 5788999999999988
Q ss_pred ccccC----CCcceeeecCCCCCC-CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-Ccee
Q psy1314 93 TKRVN----PLKCKIFVGGLTTEI-SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVI 166 (275)
Q Consensus 93 ~~~~~----~~~~~l~V~~l~~~~-~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~ 166 (275)
..... ...++|||+|||..+ ++++|+++|++||.|..|.|+.+. ++.++|+|||+|.+.++|.+|++.+ +..|
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 76543 245789999999995 999999999999999999999886 6889999999999999999999987 5899
Q ss_pred CCeEEEEEEeeeCCC
Q psy1314 167 CGKEVDVKRVKFNPE 181 (275)
Q Consensus 167 ~g~~i~v~~~~~~~~ 181 (275)
.|++|.|.++.+++.
T Consensus 252 ~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 GGSHLRVSFCAPGPP 266 (284)
T ss_dssp TTEECEEEECCSSSC
T ss_pred CCeEEEEEEecCCCc
Confidence 999999999988765
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.7e-31 Score=224.85 Aligned_cols=159 Identities=19% Similarity=0.324 Sum_probs=140.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
.+..++++|||+|||.++|+++|+ ++|++||.|.+|.|++ +++++|||||+|.+.++|++||+ +++..+.++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456779999999999999999976 8999999999999886 67899999999999999999996 467799999
Q ss_pred eecccccccccC--------------------------------------------------------------------
Q psy1314 86 KIDPKRVTKRVN-------------------------------------------------------------------- 97 (275)
Q Consensus 86 ~i~v~~~~~~~~-------------------------------------------------------------------- 97 (275)
.|.|.++.....
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999887654321
Q ss_pred --------------------------------------------CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEec
Q psy1314 98 --------------------------------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQP 133 (275)
Q Consensus 98 --------------------------------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 133 (275)
...++|||+|||..+++++|+++|++||.|..|.|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 134679999999999999999999999999999998
Q ss_pred cCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeC-CeEEEEEEee
Q psy1314 134 FDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVIC-GKEVDVKRVK 177 (275)
Q Consensus 134 ~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~-g~~i~v~~~~ 177 (275)
.++ +|||||+|.+.++|.+|++.++ ..|. |+.|.|.+++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 653 5899999999999999999884 8888 9999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.2e-31 Score=217.37 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=133.6
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 14 NDERKLFVGGLH-RNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 14 ~~~~~l~v~~Lp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
.+.++|||+||| .++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++||+ +++..+.+++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998763 7999999999999999998 578899999999987
Q ss_pred cccccC--------------------------------------CCcceeeecCCCCCCCHHHHHHhcccCCCe--EEEE
Q psy1314 92 VTKRVN--------------------------------------PLKCKIFVGGLTTEISEQDVRDYFSQYGSI--TEFQ 131 (275)
Q Consensus 92 ~~~~~~--------------------------------------~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v--~~v~ 131 (275)
+..... .+.++|||+|||+++|+++|+++|++||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 642110 123479999999999999999999999998 8899
Q ss_pred eccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCe----EEEEEEe
Q psy1314 132 QPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGK----EVDVKRV 176 (275)
Q Consensus 132 i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~----~i~v~~~ 176 (275)
++.++ +.++|+|||+|.+.++|.+||+.|+ ..|.++ ++.|+++
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88775 4457999999999999999999985 778876 5666654
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.9e-31 Score=228.18 Aligned_cols=165 Identities=19% Similarity=0.318 Sum_probs=142.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
.+.++|||+|||+++|+++|+++|++|| +|.+|.|+.++. +.++|||||+|.+.++|++|++ +++..+.++.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999998865 7899999999999999999999 678899999999998
Q ss_pred cccccC--------CCcceeeecCCCCC-CCHHHHHHhcccCCCeEEEEeccCCC-CCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 92 VTKRVN--------PLKCKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKS-KNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 92 ~~~~~~--------~~~~~l~V~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~-~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
+.+... ...++|||+|||.. +++++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+|+ .
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 765432 23478999999999 99999999999999999999999876 5889999999999999999999 7
Q ss_pred C-CceeCCeEEEEEEeeeCC
Q psy1314 162 P-KQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 162 ~-~~~~~g~~i~v~~~~~~~ 180 (275)
+ +..|.|++|.|.++.++|
T Consensus 273 l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GTTEEETTEEEEEEECCCCC
T ss_pred hcCCEECCcEEEEEEecCCC
Confidence 6 589999999999998874
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.5e-30 Score=220.44 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=143.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||+++|+++|+++|++||+|.+|.|.++ +|||||+|.+.++|++|++ +++..+.++.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344466789999999999999999999999999999999754 6899999999999999998 578899999999
Q ss_pred ccccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C-cee
Q psy1314 89 PKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K-QVI 166 (275)
Q Consensus 89 v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~-~~~ 166 (275)
|.++.+ ..+|||+|||..+|+++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..+ + ..+
T Consensus 90 v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 90 IRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp EEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred eeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 998853 568999999999999999999999999999999998 57899999999999999999999997 3 444
Q ss_pred C---CeEEEEEEeeeCCC
Q psy1314 167 C---GKEVDVKRVKFNPE 181 (275)
Q Consensus 167 ~---g~~i~v~~~~~~~~ 181 (275)
. +++|.|.++....+
T Consensus 164 ~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSSSCCBCEEEECCCEES
T ss_pred ecCCCceEEEeeccccCc
Confidence 4 89999999887644
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=9.9e-31 Score=217.38 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=140.5
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 10 GPGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
.....++++|||+|||+ ++|+++|+++|++||+|.+|.|+.++ +|||||+|.+.++|++||+ +++..+.++.|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34456789999999999 99999999999999999999999875 6899999999999999997 67889999999
Q ss_pred ccccccccc------------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCC-CeEEE
Q psy1314 88 DPKRVTKRV------------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYG-SITEF 130 (275)
Q Consensus 88 ~v~~~~~~~------------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v 130 (275)
.|.++.... ....++|||+|||..+++++|+++|++|| .|..|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 998775331 11247899999999999999999999999 99999
Q ss_pred EeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC-CeEEEEEEeeeC
Q psy1314 131 QQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC-GKEVDVKRVKFN 179 (275)
Q Consensus 131 ~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~-g~~i~v~~~~~~ 179 (275)
.++.+ .+|+|||+|.+.++|.+|++.+ +..+. +++|.|.+++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99653 3689999999999999999987 58888 999999998753
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=9.7e-31 Score=224.93 Aligned_cols=163 Identities=13% Similarity=0.255 Sum_probs=138.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
.....+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+ ++|||||+|.+.++|++||++++..+.++.|.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 344567889999999999999999999999999999999998643 579999999999999999988888999999999
Q ss_pred cccccccCCCcceeeecCCCCCCCHHHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 90 KRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 90 ~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
.++ ..++|||+|||..+++++|+++|++|| .|..|.++.+.. +.++|||||+|.+.++|.+|++.+ +..|.
T Consensus 113 ~~~------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 113 SHL------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp EEC------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEC------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 876 467899999999999999999999999 999999998865 678999999999999999999976 58999
Q ss_pred CeEEEEEEeeeCCC
Q psy1314 168 GKEVDVKRVKFNPE 181 (275)
Q Consensus 168 g~~i~v~~~~~~~~ 181 (275)
|++|.|.++.+...
T Consensus 186 g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 186 GYTLVTKVSNPLEK 199 (292)
T ss_dssp TEECEEEECCCC--
T ss_pred CcEEEEEECCCCcc
Confidence 99999999886543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=9.4e-30 Score=217.93 Aligned_cols=156 Identities=15% Similarity=0.322 Sum_probs=142.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
.++++|||+|||.++|+++|+++|++|| |.+|.+ ++++|||||+|.+.++|++|++. ++..+.+++|.+.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4578999999999999999999999999 989888 34578999999999999999975 778999999999875
Q ss_pred ccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 93 TKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 93 ~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
. ..++|||+|||.++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.+ +..+.|++|
T Consensus 93 ~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 93 P-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp C-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred C-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4 4578999999999999999999999999999999999999999999999999999999999776 589999999
Q ss_pred EEEEeeeCCC
Q psy1314 172 DVKRVKFNPE 181 (275)
Q Consensus 172 ~v~~~~~~~~ 181 (275)
.|.++.++..
T Consensus 168 ~v~~a~~~~~ 177 (284)
T 3smz_A 168 YVHWTDAGQL 177 (284)
T ss_dssp EEEECCGGGC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.3e-30 Score=210.26 Aligned_cols=155 Identities=17% Similarity=0.257 Sum_probs=137.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 15 DERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 15 ~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
++++|||+|||+ ++|+++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++|++ +++..+.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999875 6899999999999999998 6788999999999876
Q ss_pred cccc------------------------------------CCCcceeeecCCCCCCCHHHHHHhcccCC-CeEEEEeccC
Q psy1314 93 TKRV------------------------------------NPLKCKIFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFD 135 (275)
Q Consensus 93 ~~~~------------------------------------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~ 135 (275)
.... ..+.++|+|+|||..+++++|+++|++|| .|..|.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 5331 12257899999999999999999999999 9999999764
Q ss_pred CCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC-CeEEEEEEeeeC
Q psy1314 136 KSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC-GKEVDVKRVKFN 179 (275)
Q Consensus 136 ~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~-g~~i~v~~~~~~ 179 (275)
. +|+|||+|.+.++|.+|++.+ +..+. +++|.|.+++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 789999999999999999987 58888 999999998754
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=9.5e-24 Score=165.19 Aligned_cols=136 Identities=16% Similarity=0.238 Sum_probs=108.4
Q ss_pred EEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC--ceecCeee------cccc-------cccccCCCcceeeecCCC
Q psy1314 45 SISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD--HYIGNKKI------DPKR-------VTKRVNPLKCKIFVGGLT 109 (275)
Q Consensus 45 ~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~--~~~~g~~i------~v~~-------~~~~~~~~~~~l~V~~l~ 109 (275)
++.|+.+.. +++||+||+|.+.++|++|++.+. ..+.+... .... .........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 566777654 689999999999999999997532 12222111 1110 111122346899999999
Q ss_pred CCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeCCCC
Q psy1314 110 TEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 110 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~~~~ 182 (275)
+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++.++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999999989999999999999999999999987 58899999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.3e-22 Score=148.93 Aligned_cols=100 Identities=20% Similarity=0.400 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~ 93 (275)
...+|||+|||+++|+++|+++|++||+|++|+|+.++ +.++|||||+|.+.++|++||+ +++..+.++.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999985 4589999999999999999997 47889999999999876
Q ss_pred cccCC---------CcceeeecCCCCCCCHHH
Q psy1314 94 KRVNP---------LKCKIFVGGLTTEISEQD 116 (275)
Q Consensus 94 ~~~~~---------~~~~l~V~~l~~~~~~~~ 116 (275)
++... ...+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 235799999999999864
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=1.6e-21 Score=175.78 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=78.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|+ ..|.|++|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999998874 89999999999998
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7655
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=136.36 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=75.6
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||+++|+++|+++|++||+|..|.|++++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999999999999999999999999999999987 589999999999986
Q ss_pred e
Q psy1314 178 F 178 (275)
Q Consensus 178 ~ 178 (275)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=135.19 Aligned_cols=81 Identities=27% Similarity=0.397 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
.+.++|||+|||+++|+++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++|++ +++..+.+++|.|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999997 4788999999999988
Q ss_pred cc
Q psy1314 93 TK 94 (275)
Q Consensus 93 ~~ 94 (275)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=2.3e-20 Score=145.65 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999987 58999999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
......
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=133.49 Aligned_cols=90 Identities=33% Similarity=0.640 Sum_probs=83.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
....+..+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+++++.+.++.|
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp CCCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++.++..
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999876644
No 28
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=7.5e-21 Score=147.43 Aligned_cols=120 Identities=20% Similarity=0.377 Sum_probs=103.3
Q ss_pred CCcccEEEEEEccHHHHHHHHHh--CCceecCeeecccccccc-----------------cCCCcceeeecCCCCCCCHH
Q psy1314 55 GQSRGFAFVTFTTQKAVDDLLAA--GDHYIGNKKIDPKRVTKR-----------------VNPLKCKIFVGGLTTEISEQ 115 (275)
Q Consensus 55 g~~~G~afV~f~~~e~a~~al~~--~~~~~~g~~i~v~~~~~~-----------------~~~~~~~l~V~~l~~~~~~~ 115 (275)
...+|+++|+|.+.++|++|++. ++..+.+ .+.+..+... .....++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 35689999999999999999975 4567888 8887776542 12345899999999999999
Q ss_pred HHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeCC
Q psy1314 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 116 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~~ 180 (275)
+|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.+ +..|.|++|.|.++.+++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999876 5899999999999999999976 588999999999988653
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=3.7e-20 Score=129.98 Aligned_cols=84 Identities=42% Similarity=0.818 Sum_probs=77.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
...+..+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+++++.+.++.|.
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred cccc
Q psy1314 89 PKRV 92 (275)
Q Consensus 89 v~~~ 92 (275)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=134.12 Aligned_cols=86 Identities=27% Similarity=0.536 Sum_probs=79.8
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKR 175 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~ 175 (275)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++..|.+++|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+..+..
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=9.7e-21 Score=134.17 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC--CceecCeeeccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG--DHYIGNKKIDPKRV 92 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~--~~~~~g~~i~v~~~ 92 (275)
+++|||+|||+++|+++|+++|++|| +|++|+|++++.|++++|||||+|.+.++|++||+.+ ...+.|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 7999999999999999999999999999999999864 34799999999998
Q ss_pred ccccCC
Q psy1314 93 TKRVNP 98 (275)
Q Consensus 93 ~~~~~~ 98 (275)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 776543
No 32
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=132.34 Aligned_cols=91 Identities=43% Similarity=0.688 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
.....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+.++..|.++.
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876654
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=133.83 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
+.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.|++++|||||+|.+.++|++||+ +++..+.++.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998 578899999999998
Q ss_pred cccc
Q psy1314 92 VTKR 95 (275)
Q Consensus 92 ~~~~ 95 (275)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 34
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.9e-20 Score=142.44 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=81.4
Q ss_pred EEEEEEccHHHHHHHHHhCC-ceecCeeecccccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCC
Q psy1314 60 FAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSK 138 (275)
Q Consensus 60 ~afV~f~~~e~a~~al~~~~-~~~~g~~i~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~ 138 (275)
+.|+++++...+..|++.+. ....++...-....+......++|||+|||+++++++|+++|++||.|..|.|+.++.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 46677777777777777642 22233222212222333445688999999999999999999999999999999999989
Q ss_pred CCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeCCCC
Q psy1314 139 NMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNPET 182 (275)
Q Consensus 139 ~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~~~~ 182 (275)
+.++|||||+|.+.++|++||+.+ +..|.|++|.|.+++++...
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999999987 48899999999999876543
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=131.48 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=76.2
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C-ceeCCeEEEEEEee
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K-QVICGKEVDVKRVK 177 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~-~~~~g~~i~v~~~~ 177 (275)
.+|||+|||+++|+++|+++|++|| +|.+|+|++++.++.++|||||+|.+.++|++||+.+ + ..+.|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 8999999999999999999999999999999999986 4 57999999999998
Q ss_pred eCCCC
Q psy1314 178 FNPET 182 (275)
Q Consensus 178 ~~~~~ 182 (275)
+++..
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77653
No 36
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=132.76 Aligned_cols=89 Identities=26% Similarity=0.468 Sum_probs=81.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
.......+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+.++..|.++.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34555677899999999999999999999999999999999999999999999999999999999999987779999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999986543
No 37
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=132.75 Aligned_cols=90 Identities=39% Similarity=0.639 Sum_probs=77.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
+...+..+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+.++..+.++.|
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l 96 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 96 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence 33456677899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++..+..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=130.41 Aligned_cols=90 Identities=22% Similarity=0.422 Sum_probs=82.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
....+..+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 334567788999999999999999999999999999999999999999999999999999999999999 4678999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876644
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=130.63 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~ 85 (275)
.....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34456678889999999999999999999999999999999999998999999999999999999999995 67899999
Q ss_pred eecccccccccC
Q psy1314 86 KIDPKRVTKRVN 97 (275)
Q Consensus 86 ~i~v~~~~~~~~ 97 (275)
.|.|+++.++..
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999876544
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=128.84 Aligned_cols=87 Identities=24% Similarity=0.409 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+.+++|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 346778999999999999999999999999999999999998899999999999999999999995 5678999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99877654
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=128.50 Aligned_cols=87 Identities=33% Similarity=0.604 Sum_probs=79.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+..+..|.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44568999999999999999999999999999999999999999999999999999999999994468999999999999
Q ss_pred eeCCCCC
Q psy1314 177 KFNPETM 183 (275)
Q Consensus 177 ~~~~~~~ 183 (275)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9876644
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=3.2e-19 Score=131.91 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=80.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..|.++.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999998999999999999999999999964 78899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876644
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=130.92 Aligned_cols=90 Identities=26% Similarity=0.438 Sum_probs=82.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
...++..+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 5 SSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 445667788999999999999999999999999999999999999999999999999999999999999 5788999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999876543
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=126.82 Aligned_cols=87 Identities=25% Similarity=0.381 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~ 85 (275)
......+.+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.++
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44456677889999999999999999999999999999999999999999999999999999999999994 78899999
Q ss_pred eecccccc
Q psy1314 86 KIDPKRVT 93 (275)
Q Consensus 86 ~i~v~~~~ 93 (275)
+|.|+++.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99999875
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=131.82 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-C----ceec
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-D----HYIG 83 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~--v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~----~~~~ 83 (275)
.....-.+|||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|++||+.+ + ..++
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 44567789999999999999999999999995 679999999999999999999999999999999864 2 2689
Q ss_pred Ceeeccccccc
Q psy1314 84 NKKIDPKRVTK 94 (275)
Q Consensus 84 g~~i~v~~~~~ 94 (275)
|++|.|+++..
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999998853
No 46
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=127.97 Aligned_cols=88 Identities=31% Similarity=0.506 Sum_probs=80.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
......+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. .+.+.++.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 345567788999999999999999999999999999999999999999999999999999999999994 7799999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999877654
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=5.5e-19 Score=130.61 Aligned_cols=93 Identities=20% Similarity=0.489 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecC
Q psy1314 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN 84 (275)
Q Consensus 6 ~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g 84 (275)
......+..+.++|||+|||.++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+. ++..|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344456677889999999999999999999999999999999999988999999999999999999999985 6789999
Q ss_pred eeecccccccccCC
Q psy1314 85 KKIDPKRVTKRVNP 98 (275)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (275)
+.|.|+++..+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999998766543
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=128.25 Aligned_cols=87 Identities=25% Similarity=0.336 Sum_probs=80.4
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
.....++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999987 589999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=127.33 Aligned_cols=86 Identities=29% Similarity=0.453 Sum_probs=79.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999887 48899999999999
Q ss_pred eeCCCCC
Q psy1314 177 KFNPETM 183 (275)
Q Consensus 177 ~~~~~~~ 183 (275)
.+++...
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9887653
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=131.61 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.|+.+++++|||||+|.+.++|++||+.+ +..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999987 48999999999998
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 51
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.2e-19 Score=134.22 Aligned_cols=105 Identities=18% Similarity=0.301 Sum_probs=93.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
.++..++|||+|||.++|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|++|++ +++..+.++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567789999999999999999999999999999999876 4558999999999999999999 57889999999999
Q ss_pred ccccccCCCcceeeecCCCCCCCHHHHHHhcccCCC
Q psy1314 91 RVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGS 126 (275)
Q Consensus 91 ~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~ 126 (275)
++.+.... .+++...++++|+++|++||.
T Consensus 81 ~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 98765443 577888899999999999984
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=129.46 Aligned_cols=89 Identities=31% Similarity=0.564 Sum_probs=81.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
......+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999996 57789999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++.++..
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9999876554
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=127.78 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=78.3
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4679999999999999999999999999999999999999999999999999999999999976 588999999999998
Q ss_pred eCCCC
Q psy1314 178 FNPET 182 (275)
Q Consensus 178 ~~~~~ 182 (275)
.+...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 77653
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=127.01 Aligned_cols=85 Identities=26% Similarity=0.554 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
+.+.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+.+++|.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4578899999999999999999999999999999999999999999999999999999999998 578899999999999
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+.++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876644
No 55
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=130.92 Aligned_cols=83 Identities=13% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
....+.++|||+|||+++|+++|+++|++||+|.+|.|++++. ++++|||||+|.+.++|++||+++++.+.++.|.|.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456779999999999999999999999999999999999977 999999999999999999999987889999999998
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7654
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=126.02 Aligned_cols=87 Identities=21% Similarity=0.384 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecC
Q psy1314 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGN 84 (275)
Q Consensus 6 ~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g 84 (275)
.+.+.....+.++|||+|||.++++++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++|++ +++..+.+
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 6 SGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34445666788999999999999999999999999999999999999999999999999999999999997 56789999
Q ss_pred eeeccccc
Q psy1314 85 KKIDPKRV 92 (275)
Q Consensus 85 ~~i~v~~~ 92 (275)
++|.|+++
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 99999876
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=130.07 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=81.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-C------Cc
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-G------DH 80 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~------~~ 80 (275)
....+..+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+. + +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 3445667789999999999999999999999999999999999999999999999999999999999985 4 68
Q ss_pred eecCeeecccccccccC
Q psy1314 81 YIGNKKIDPKRVTKRVN 97 (275)
Q Consensus 81 ~~~g~~i~v~~~~~~~~ 97 (275)
.+.++.|.|+++.++..
T Consensus 87 ~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ESSSCEEEEECCCCCCC
T ss_pred EEcCEEEEEEECCCCcc
Confidence 99999999999876644
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=6e-19 Score=123.75 Aligned_cols=80 Identities=31% Similarity=0.624 Sum_probs=75.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.++..|+|++|.|.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999998888999999999875
No 59
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.6e-19 Score=128.40 Aligned_cols=87 Identities=20% Similarity=0.371 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
.....+.++|||+|||.++|+++|+++|++|+ |++|.|+.++.+++++|||||+|.+.++|++||++++..|.++.|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 34456788999999999999999999999996 99999999999999999999999999999999977888999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99876544
No 60
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=124.72 Aligned_cols=83 Identities=23% Similarity=0.525 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
..+.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++. ++..+.++.|.|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999998999999999999999999999984 78899999999998
Q ss_pred cccc
Q psy1314 92 VTKR 95 (275)
Q Consensus 92 ~~~~ 95 (275)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8654
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=129.96 Aligned_cols=91 Identities=27% Similarity=0.525 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceec
Q psy1314 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIG 83 (275)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~ 83 (275)
...+......+.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..+.
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 344455667788999999999999999999999999999999999999999999999999999999999997 5788999
Q ss_pred Ceeecccccccc
Q psy1314 84 NKKIDPKRVTKR 95 (275)
Q Consensus 84 g~~i~v~~~~~~ 95 (275)
++.|.|+++.++
T Consensus 95 g~~l~V~~a~~k 106 (108)
T 2jrs_A 95 GRPMKVGHVTER 106 (108)
T ss_dssp SSCCEEECSCSS
T ss_pred CEEEEEEEcccC
Confidence 999999998765
No 62
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=135.38 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=78.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999987 58899999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
..+..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887654
No 63
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=2.3e-20 Score=142.22 Aligned_cols=121 Identities=9% Similarity=0.091 Sum_probs=73.1
Q ss_pred cEEEEEEccHHHHHHHHHhCCceecCeeeccc---ccccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccC
Q psy1314 59 GFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK---RVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFD 135 (275)
Q Consensus 59 G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~---~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~ 135 (275)
++||.+|..++.+..++........+...--. ..........++|||+|||+++|+++|+++|++|| |+.|.|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d 80 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG 80 (139)
T ss_dssp -------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC
Confidence 57888888877766666543333333322111 11112234567899999999999999999999999 679999999
Q ss_pred CCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeCCC
Q psy1314 136 KSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFNPE 181 (275)
Q Consensus 136 ~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~~~ 181 (275)
+. ++++|||||+|.+.++|++||+..+..|.++.|+|..+..++.
T Consensus 81 ~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 81 PD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 76 8999999999999999999995556899999999988876543
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=129.05 Aligned_cols=90 Identities=23% Similarity=0.371 Sum_probs=81.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
.......+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344556788999999999999999999999999999999999999999999999999999999999997 5788999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999876644
No 65
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=130.63 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
.....+.+.++|||+|||+++|+++|+++|++||.+ +|.|+.++ +++++|||||+|.++++|++||+++.+.|.++.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 7 GSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp CSSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 334566788999999999999999999999999955 99999997 8999999999999999999999888889999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|..+.+..
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 998876543
No 66
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=129.52 Aligned_cols=88 Identities=24% Similarity=0.384 Sum_probs=79.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
...+...+.++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|.++++|++||+.+++.+.++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34455677899999999999999999999999999987 888888 7899999999999999999999999888999999
Q ss_pred eccccccccc
Q psy1314 87 IDPKRVTKRV 96 (275)
Q Consensus 87 i~v~~~~~~~ 96 (275)
|.|..+..++
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9998876543
No 67
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=4.2e-19 Score=131.28 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=80.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999887 5899999999999
Q ss_pred eeeCCCCCC
Q psy1314 176 VKFNPETMG 184 (275)
Q Consensus 176 ~~~~~~~~~ 184 (275)
++++.....
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 988766543
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=126.27 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. .+.|+|++|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 44568899999999999999999999999999999999999999999999999999999999995 57899999999999
Q ss_pred eeCCCCC
Q psy1314 177 KFNPETM 183 (275)
Q Consensus 177 ~~~~~~~ 183 (275)
.+++...
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9876654
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=6.3e-19 Score=122.43 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~~ 94 (275)
..+|||+|||.++++++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+.+++|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999998 478899999999999876
Q ss_pred cc
Q psy1314 95 RV 96 (275)
Q Consensus 95 ~~ 96 (275)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=126.65 Aligned_cols=84 Identities=25% Similarity=0.417 Sum_probs=78.3
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEE-EeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEF-QQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
..++|||+|||.++++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99999889999999999999999999999987 58899999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
.+++..
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877653
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=126.66 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCee--
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE-SISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKK-- 86 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~-~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~-- 86 (275)
....+.++|||+|||+++|+++|+++|++||+|. +|.|+.++.+++++|||||+|.+.++|++|++. ++..+.++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4466789999999999999999999999999999 999999999999999999999999999999995 677999998
Q ss_pred --eccccccccc
Q psy1314 87 --IDPKRVTKRV 96 (275)
Q Consensus 87 --i~v~~~~~~~ 96 (275)
|.|.++....
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 8888876543
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=127.07 Aligned_cols=85 Identities=29% Similarity=0.541 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI-SIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~-~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
+.+.++|||+|||.++|+++|+++|++||+|.+| .|+.++.+++++|||||+|.+.++|++||+ +++..+.+++|.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 999998999999999999999999999999 56789999999999
Q ss_pred ccccccC
Q psy1314 91 RVTKRVN 97 (275)
Q Consensus 91 ~~~~~~~ 97 (275)
++.++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9876654
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=128.59 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=80.1
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999987 588999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99877654
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.6e-19 Score=123.71 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
...+.++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..+.+++|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999996 57889999999998
Q ss_pred cc
Q psy1314 91 RV 92 (275)
Q Consensus 91 ~~ 92 (275)
++
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 76
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=4.6e-19 Score=129.08 Aligned_cols=90 Identities=24% Similarity=0.464 Sum_probs=80.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCcee---c
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYI---G 83 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~---~ 83 (275)
.......+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 345566788999999999999999999999999999999999999999999999999999999999998 456666 8
Q ss_pred CeeecccccccccC
Q psy1314 84 NKKIDPKRVTKRVN 97 (275)
Q Consensus 84 g~~i~v~~~~~~~~ 97 (275)
+++|.|+++..+..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999876543
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=123.91 Aligned_cols=82 Identities=24% Similarity=0.437 Sum_probs=74.9
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.+ +..+.|++|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4678999999999999999999999999999999999889999999999999999999999986 589999999999998
Q ss_pred eCC
Q psy1314 178 FNP 180 (275)
Q Consensus 178 ~~~ 180 (275)
++|
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=128.34 Aligned_cols=87 Identities=17% Similarity=0.415 Sum_probs=79.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT-GQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t-g~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||+++|+++|+++|++|| |++|.|+.++.+ ++++|||||+|.+.++|++||.+++..+.++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34456778999999999999999999999999 999999999888 9999999999999999999996678899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999877654
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=126.58 Aligned_cols=85 Identities=19% Similarity=0.397 Sum_probs=77.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCC-CCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSK-NMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
....++|||+|||+++++++|+++|++|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .+ +..|.+++|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999887 899999999999999999999 65 689999999999
Q ss_pred EeeeCCCCC
Q psy1314 175 RVKFNPETM 183 (275)
Q Consensus 175 ~~~~~~~~~ 183 (275)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998876643
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=125.31 Aligned_cols=86 Identities=16% Similarity=0.316 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999997 899999999999999999999965 77899999999
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|+++.++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99987654
No 80
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=2.5e-18 Score=127.04 Aligned_cols=87 Identities=24% Similarity=0.442 Sum_probs=80.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999999999999999889999999999999999999999987 5899999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+..++...
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99887654
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=6.7e-19 Score=128.93 Aligned_cols=86 Identities=29% Similarity=0.533 Sum_probs=78.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++..|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
.+++.+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 877653
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=123.90 Aligned_cols=86 Identities=21% Similarity=0.399 Sum_probs=78.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
+.....+.++|||+|||+++|+++|+++|++| .|.+|.|+.+ .+++++|||||+|.+.++|++||++++..+.++.|.
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~ 80 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE
Confidence 34566788999999999999999999999999 9999999999 789999999999999999999999778899999999
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|.++.++.
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99987653
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=128.36 Aligned_cols=86 Identities=26% Similarity=0.445 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
....+.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 344567889999999999999999999999999999999999999999999999999999999998 5788999999999
Q ss_pred ccccccc
Q psy1314 90 KRVTKRV 96 (275)
Q Consensus 90 ~~~~~~~ 96 (275)
+++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 84
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=128.19 Aligned_cols=87 Identities=25% Similarity=0.461 Sum_probs=80.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999886 5899999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876544
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=131.43 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=78.8
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKF 178 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~ 178 (275)
..++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+..+..|.|++|.|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999999966899999999999988
Q ss_pred CCCC
Q psy1314 179 NPET 182 (275)
Q Consensus 179 ~~~~ 182 (275)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7654
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=132.16 Aligned_cols=84 Identities=38% Similarity=0.710 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+.++..|.++.|.|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 44589999999999999999999999999999999999999999999999999999999999998889999999999987
Q ss_pred cccC
Q psy1314 94 KRVN 97 (275)
Q Consensus 94 ~~~~ 97 (275)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=127.47 Aligned_cols=90 Identities=22% Similarity=0.451 Sum_probs=81.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeC-CCCCCcccEEEEEEccHHHHHHHHHh--CCceecC
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKND-PHTGQSRGFAFVTFTTQKAVDDLLAA--GDHYIGN 84 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~-~~tg~~~G~afV~f~~~e~a~~al~~--~~~~~~g 84 (275)
.......+.++|||+|||.++|+++|+++|++||+|++|.|+.+ +.+++++|||||+|.+.++|++||+. ++..+.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34456677899999999999999999999999999999999998 78999999999999999999999986 5789999
Q ss_pred eeecccccccccC
Q psy1314 85 KKIDPKRVTKRVN 97 (275)
Q Consensus 85 ~~i~v~~~~~~~~ 97 (275)
+.|.|+++.++..
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999876544
No 88
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=128.63 Aligned_cols=87 Identities=32% Similarity=0.518 Sum_probs=80.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+.+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+..+..|+|++|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45568999999999999999999999999999999999999999999999999999999999999558999999999999
Q ss_pred eeCCCCC
Q psy1314 177 KFNPETM 183 (275)
Q Consensus 177 ~~~~~~~ 183 (275)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8876543
No 89
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=132.40 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
..+.+.++|||+|||+++|+++|+++|++||.| .+|.|+.++ +++++|||||+|.+.++|++||++++..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 345678899999999999999999999999999 899999997 999999999999999999999999888999999999
Q ss_pred ccccccc
Q psy1314 90 KRVTKRV 96 (275)
Q Consensus 90 ~~~~~~~ 96 (275)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886543
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.6e-19 Score=132.49 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=80.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
....+++.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|.+++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999 57789999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999987653
No 91
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=128.57 Aligned_cols=87 Identities=25% Similarity=0.497 Sum_probs=79.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999887 5889999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+..+....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 92
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=126.29 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCC---CCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPH---TGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~---tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
..+.++|||+|||+++|+++|+++|++||+|++|.|+.++. |++++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46789999999999999999999999999999999999876 668999999999999999999995 67899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++..+..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999876544
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=126.14 Aligned_cols=86 Identities=23% Similarity=0.412 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCce-ecCeee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQ-YGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHY-IGNKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~-~~g~~i 87 (275)
.++.+.++|||+|||+++|+++|+++|++ ||+|.+|.|+.++ +++++|||||+|.+.++|++||+. ++.. +.++.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45677899999999999999999999999 9999999999998 999999999999999999999995 5667 999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++.++..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876543
No 94
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4.5e-19 Score=133.23 Aligned_cols=87 Identities=21% Similarity=0.410 Sum_probs=80.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 445689999999999999999999999999999999999989999999999999999999999876 5889999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+..+....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 99887654
No 95
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=131.89 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
.+.++|||+|||.++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||.++++.|.++.|.|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999778899999999999886
Q ss_pred cc
Q psy1314 94 KR 95 (275)
Q Consensus 94 ~~ 95 (275)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=130.25 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
.+...+..+|||+|||+++|+++|+++|++| .|.+|.|+.++. ++++|||||+|.++++|++||+++++.|.++.|.|
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3445556799999999999999999999999 899999999965 99999999999999999999988899999999999
Q ss_pred ccccc
Q psy1314 90 KRVTK 94 (275)
Q Consensus 90 ~~~~~ 94 (275)
..+..
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 87754
No 97
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-18 Score=124.59 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=77.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+++++++|+++|++|+ |..|.|+.++.+++++|||||+|.+.++|++||+..+..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34568999999999999999999999996 99999999999999999999999999999999943469999999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 877654
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=5.6e-19 Score=124.37 Aligned_cols=81 Identities=23% Similarity=0.492 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
+.++|||+|||.++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|+.+++..+.++.|.|+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999999899999999999999999999997788899999999998865
Q ss_pred c
Q psy1314 95 R 95 (275)
Q Consensus 95 ~ 95 (275)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.7e-19 Score=149.22 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=75.4
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCC--CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
..++|||+|||+++|+++|+++|++|| .|+.|+|++++.+++++|||||+|.+.++|++||+.|+ +.|.+++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999999999999999999999999999999885 899999999999
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 100
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=128.59 Aligned_cols=86 Identities=22% Similarity=0.379 Sum_probs=79.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999976 5889999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876544
No 101
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=125.63 Aligned_cols=85 Identities=18% Similarity=0.336 Sum_probs=77.6
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCC---CCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKS---KNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
..++|||+|||+++++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|++||+.+ +..|.+++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999998876 6689999999999999999999987 589999999999
Q ss_pred EeeeCCCCC
Q psy1314 175 RVKFNPETM 183 (275)
Q Consensus 175 ~~~~~~~~~ 183 (275)
++..+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998776543
No 102
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=128.11 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=73.1
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCC--eEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c----eeCCeEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGS--ITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q----VICGKEV 171 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~----~~~g~~i 171 (275)
.-.+|||+|||+++|+++|+++|++||. |.+|+|++|+.+++++|||||+|.+.++|++||+.++ . .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 6789999999999999999999999999999999863 2 5999999
Q ss_pred EEEEeee
Q psy1314 172 DVKRVKF 178 (275)
Q Consensus 172 ~v~~~~~ 178 (275)
.|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 103
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=124.29 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=75.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
......+.++|||+|||+++++++|+++|++||+|++|.|+.++. ++++|||||+|.+.++|++||+ +++..+.+++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345567789999999999999999999999999999999999975 8999999999999999999999 57889999999
Q ss_pred cccccc
Q psy1314 88 DPKRVT 93 (275)
Q Consensus 88 ~v~~~~ 93 (275)
.|+++.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 998875
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=128.68 Aligned_cols=84 Identities=26% Similarity=0.457 Sum_probs=77.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999999998 8899999999999999999999987 58899999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876654
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=125.44 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-C--CceecCeee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-G--DHYIGNKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~--~~~~~g~~i 87 (275)
..+.+.++|||+|||+++|+++|+++|++||+|++|.|+++ ||||||+|.+.++|++|++. + +..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34677899999999999999999999999999999999975 68999999999999999984 3 368999999
Q ss_pred cccccccccCC
Q psy1314 88 DPKRVTKRVNP 98 (275)
Q Consensus 88 ~v~~~~~~~~~ 98 (275)
.|.++..+...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999766443
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=125.86 Aligned_cols=89 Identities=18% Similarity=0.369 Sum_probs=80.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
.......+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +++++|||||+|.+.++|++||+ +++..+.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34455678899999999999999999999999999999999998 88999999999999999999998 5788999999
Q ss_pred ecccccccccCC
Q psy1314 87 IDPKRVTKRVNP 98 (275)
Q Consensus 87 i~v~~~~~~~~~ 98 (275)
|.|+++.++...
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2d9p_A 85 LYVALAQRKEER 96 (103)
T ss_dssp CEEEECSSCCCC
T ss_pred EEEEEecccccC
Confidence 999998776543
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.7e-19 Score=121.94 Aligned_cols=75 Identities=37% Similarity=0.658 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
+|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|+++++..+.+++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999988999999999999999999999998888999999988764
No 108
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=127.50 Aligned_cols=88 Identities=16% Similarity=0.366 Sum_probs=80.5
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccC-CCCCCeeeEEEEEECCHHHHHHHHhcC--CceeCCeEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFD-KSKNMKKGFCFISFDDQNVAEQVLANP--KQVICGKEVD 172 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~G~afV~f~~~e~a~~Ai~~~--~~~~~g~~i~ 172 (275)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|++||+.+ +..|.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 788999999999999999999999987 4889999999
Q ss_pred EEEeeeCCCCC
Q psy1314 173 VKRVKFNPETM 183 (275)
Q Consensus 173 v~~~~~~~~~~ 183 (275)
|.++.+++...
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876643
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=127.66 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=79.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-------CceeCCe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-------KQVICGK 169 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-------~~~~~g~ 169 (275)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 445689999999999999999999999999999999999999999999999999999999999976 5789999
Q ss_pred EEEEEEeeeCCCCC
Q psy1314 170 EVDVKRVKFNPETM 183 (275)
Q Consensus 170 ~i~v~~~~~~~~~~ 183 (275)
+|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998876544
No 110
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=124.26 Aligned_cols=88 Identities=24% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+ ++|||||+|.+.++|++||+ +++..+.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34456678899999999999999999999999999999999998543 68999999999999999998 6788999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++..+..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999876543
No 111
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.5e-18 Score=120.59 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=75.8
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.+ +..+.|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999986 58999999999999876
Q ss_pred C
Q psy1314 180 P 180 (275)
Q Consensus 180 ~ 180 (275)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.4e-18 Score=127.39 Aligned_cols=87 Identities=26% Similarity=0.385 Sum_probs=79.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445667889999999999999999999999999999999999999999999999999999999998 578899999999
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|+++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987654
No 113
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=4.7e-19 Score=132.46 Aligned_cols=84 Identities=25% Similarity=0.426 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--SISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~--~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
.....+.++|||+|||+++|+++|+++|++| .|+ +|.|+.++. ++++|||||+|.++++|++||++++..|.++.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 3455678899999999999999999999999 677 899999976 999999999999999999999998899999999
Q ss_pred cccccccc
Q psy1314 88 DPKRVTKR 95 (275)
Q Consensus 88 ~v~~~~~~ 95 (275)
.|..+..+
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887654
No 114
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=2.8e-19 Score=126.30 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~ 93 (275)
.+|||+|||+++|+++|+++|++|| .|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+.|+.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999997 56779999999999987
Q ss_pred cccC
Q psy1314 94 KRVN 97 (275)
Q Consensus 94 ~~~~ 97 (275)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 115
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.1e-18 Score=125.29 Aligned_cols=87 Identities=23% Similarity=0.424 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecC---ee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN---KK 86 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g---~~ 86 (275)
....+.++|||+|||.++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+. ++..+.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 444668999999999999999999999999999999999997 799999999999999999999984 6777887 99
Q ss_pred ecccccccccCC
Q psy1314 87 IDPKRVTKRVNP 98 (275)
Q Consensus 87 i~v~~~~~~~~~ 98 (275)
|.|+++..+...
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999998766543
No 116
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=126.44 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+++|+++|+++|++||.+ .|.|+.++ +++++|||||+|.+.++|++||+..++.|.++.|+|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999954 99999997 899999999999999999999976568999999999887
Q ss_pred eeCC
Q psy1314 177 KFNP 180 (275)
Q Consensus 177 ~~~~ 180 (275)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.4e-18 Score=128.92 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.++.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999985 678999999999
Q ss_pred ccc
Q psy1314 90 KRV 92 (275)
Q Consensus 90 ~~~ 92 (275)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 118
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=7.3e-19 Score=127.97 Aligned_cols=87 Identities=21% Similarity=0.396 Sum_probs=79.0
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee---CCeEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI---CGKEV 171 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~---~g~~i 171 (275)
.....++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ ..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999999874 566 88999
Q ss_pred EEEEeeeCCCC
Q psy1314 172 DVKRVKFNPET 182 (275)
Q Consensus 172 ~v~~~~~~~~~ 182 (275)
.|.++..+...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999887654
No 119
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=125.66 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999988 7889999999999999999999986 5889999999999
Q ss_pred eeeCCCCCC
Q psy1314 176 VKFNPETMG 184 (275)
Q Consensus 176 ~~~~~~~~~ 184 (275)
+.++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998776543
No 120
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.6e-18 Score=123.87 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~~ 93 (275)
++++|||+|||.++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..+.++.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999997 57889999999999987
Q ss_pred ccc
Q psy1314 94 KRV 96 (275)
Q Consensus 94 ~~~ 96 (275)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=128.83 Aligned_cols=86 Identities=22% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeE--------EEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSIT--------EFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
....++|||+|||.++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6999999899999999999999999999999986 58999
Q ss_pred CeEEEEEEeeeCCCC
Q psy1314 168 GKEVDVKRVKFNPET 182 (275)
Q Consensus 168 g~~i~v~~~~~~~~~ 182 (275)
|++|.|.++..++..
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887654
No 122
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=131.92 Aligned_cols=89 Identities=27% Similarity=0.437 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
..+..+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44566788999999999999999999999999999999999999999999999999999999999995 67899999999
Q ss_pred ccccccccCC
Q psy1314 89 PKRVTKRVNP 98 (275)
Q Consensus 89 v~~~~~~~~~ 98 (275)
|+++..+...
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9998766543
No 123
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=124.11 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=78.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hC
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AG 78 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~ 78 (275)
+....+...++|||+|||.++|+++|+++|++||.|.+ |.|+.++.+++++|||||+|.+.++|++|++ ++
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34556778899999999999999999999999999999 9999999999999999999999999999997 57
Q ss_pred CceecCeeeccccc
Q psy1314 79 DHYIGNKKIDPKRV 92 (275)
Q Consensus 79 ~~~~~g~~i~v~~~ 92 (275)
+..+.++.|.|+++
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 88999999998876
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.5e-18 Score=136.59 Aligned_cols=86 Identities=17% Similarity=0.353 Sum_probs=77.3
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999987 588999999999999
Q ss_pred eCCCCCC
Q psy1314 178 FNPETMG 184 (275)
Q Consensus 178 ~~~~~~~ 184 (275)
.++....
T Consensus 151 ~~~~~~~ 157 (165)
T 1rk8_A 151 VKGPKRV 157 (165)
T ss_dssp ECC----
T ss_pred CCCCCCC
Confidence 8876543
No 125
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=127.28 Aligned_cols=88 Identities=22% Similarity=0.341 Sum_probs=80.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCc
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--------SISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDH 80 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~ 80 (275)
..+..+.++|||+|||.++|+++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|++||+ +++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999 69999999999999999999999999999998 5788
Q ss_pred eecCeeecccccccccC
Q psy1314 81 YIGNKKIDPKRVTKRVN 97 (275)
Q Consensus 81 ~~~g~~i~v~~~~~~~~ 97 (275)
.|.++.|.|+++..+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999876644
No 126
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-18 Score=122.75 Aligned_cols=89 Identities=21% Similarity=0.398 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
........+.++|||+|||.++|+++|+++|++||+|++|.|+.++. .++|||||+|.+.++|++||+ +++..|.++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33445567789999999999999999999999999999999999864 389999999999999999998 478899999
Q ss_pred eecccccccccC
Q psy1314 86 KIDPKRVTKRVN 97 (275)
Q Consensus 86 ~i~v~~~~~~~~ 97 (275)
.|.|+++.++..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999876544
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=3.9e-19 Score=121.11 Aligned_cols=75 Identities=40% Similarity=0.721 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 18 ~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
+|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++++++.+.++.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999999888999999988753
No 128
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=123.90 Aligned_cols=84 Identities=15% Similarity=0.348 Sum_probs=77.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999988 8899999999999999999999886 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.+++.
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987764
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.7e-18 Score=125.13 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
....++.++|||+|||+++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556778999999999999999999999999999999999997 99999999999999999999999 478899999999
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98764
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=6.8e-19 Score=130.76 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
....+.++|||+|||+++|+++|+++|++||. |.+|+|+.++. ++++|||||+|.+.++|++||+++++.|.++.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 44567889999999999999999999999999 89999999976 999999999999999999999988899999999
Q ss_pred cccccccc
Q psy1314 88 DPKRVTKR 95 (275)
Q Consensus 88 ~v~~~~~~ 95 (275)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99887543
No 131
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=127.85 Aligned_cols=84 Identities=30% Similarity=0.518 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
+.++.++|||+|||.++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+. ++..+.++.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45778999999999999999999999999999999999997 899999999999999999999985 5779999999999
Q ss_pred cccccc
Q psy1314 91 RVTKRV 96 (275)
Q Consensus 91 ~~~~~~ 96 (275)
++..+.
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987654
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-19 Score=121.26 Aligned_cols=76 Identities=45% Similarity=0.777 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
++|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++.++..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999998779999999988875
No 133
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=125.63 Aligned_cols=85 Identities=21% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345688999999999999999999999999999999999999999999999999999999999976 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.+++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998764
No 134
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.3e-19 Score=128.51 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecC-
Q psy1314 13 RNDERKLFVGGLHR------NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGN- 84 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~------~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g- 84 (275)
...+++|||+|||. ++++++|+++|++||+|.+|.|+.++.|++++|||||+|.+.++|++||+ +++..+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999997 57889998
Q ss_pred eeecccccccc
Q psy1314 85 KKIDPKRVTKR 95 (275)
Q Consensus 85 ~~i~v~~~~~~ 95 (275)
+.|.|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999988654
No 135
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=122.02 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=75.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.+++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 445689999999999999999999999999999999999999999999999999999999999887 5899999999998
Q ss_pred ee
Q psy1314 176 VK 177 (275)
Q Consensus 176 ~~ 177 (275)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 136
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=125.74 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=78.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhccc-CCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ce-eCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQ-YGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QV-ICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~-~~g~~i~v 173 (275)
....++|||+|||+++++++|+++|++ ||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ .. |.|++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 445689999999999999999999999 9999999999998 89999999999999999999999875 77 99999999
Q ss_pred EEeeeCCCC
Q psy1314 174 KRVKFNPET 182 (275)
Q Consensus 174 ~~~~~~~~~ 182 (275)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 137
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-19 Score=122.76 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
+.+.++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++. ++..+.++.+.+++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45788999999999999999999999999999999999999999999999999999999999984 57788999888876
Q ss_pred cc
Q psy1314 92 VT 93 (275)
Q Consensus 92 ~~ 93 (275)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=127.03 Aligned_cols=87 Identities=16% Similarity=0.418 Sum_probs=73.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCC-CCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDP-HTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
+........++|||+|||.++|+++|+++|++|| |.+|.|+.++ .+++++|||||+|.+.++|++||++++..+.++.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3445567789999999999999999999999999 9999999998 6899999999999999999999977788999999
Q ss_pred ecccccccc
Q psy1314 87 IDPKRVTKR 95 (275)
Q Consensus 87 i~v~~~~~~ 95 (275)
|.|+++.++
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998764
No 139
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=122.93 Aligned_cols=86 Identities=21% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 455689999999999999999999999999999999988653 7999999999999999999986 5899999999999
Q ss_pred eeeCCCCCC
Q psy1314 176 VKFNPETMG 184 (275)
Q Consensus 176 ~~~~~~~~~ 184 (275)
+.+++....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 140
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=2.4e-19 Score=126.69 Aligned_cols=82 Identities=15% Similarity=0.272 Sum_probs=70.6
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCC--CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
.+|||+|||+++++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999998874 89999999999998
Q ss_pred eCCCC
Q psy1314 178 FNPET 182 (275)
Q Consensus 178 ~~~~~ 182 (275)
+.+..
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 141
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=5.1e-18 Score=120.21 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
....+.++|||+|||.++|+++|+++|++||+|++|.|+.+ +++++|||||+|.+.++|++|++. ++..+.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999984 789999999999999999999984 788999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
+++.+...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99876544
No 142
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=5.9e-19 Score=133.95 Aligned_cols=85 Identities=16% Similarity=0.305 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
.++..+.++|||+|||+++|+++|+++|++||. |.+|.|+.++. ++++|||||+|.+.++|++||+++++.|.++.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 355677899999999999999999999999999 89999999977 99999999999999999999997788999999
Q ss_pred ecccccccc
Q psy1314 87 IDPKRVTKR 95 (275)
Q Consensus 87 i~v~~~~~~ 95 (275)
|.|.++..+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999887543
No 143
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-18 Score=124.63 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 4556678999999999999999999999999999999999996 69999999999999999999998 578899999999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9987644
No 144
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.9e-18 Score=132.90 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
...+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..|.++.|.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345778999999999999999999999999999999999999999999999999999999999995 6789999999999
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
++..
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9864
No 145
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=3.8e-18 Score=125.04 Aligned_cols=86 Identities=17% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999976 5899999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
+.+++.+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987653
No 146
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=124.87 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.......++|||+|||+++|+++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++||+. ++..|.++.|.
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34556778999999999999999999999999999998988889999999999999999999999965 56899999999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9987643
No 147
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.3e-18 Score=129.36 Aligned_cols=89 Identities=25% Similarity=0.423 Sum_probs=80.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
......+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34455667899999999999999999999999999999999999899999999999999999999997 57889999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++..+..
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999876544
No 148
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.3e-18 Score=120.11 Aligned_cols=80 Identities=28% Similarity=0.550 Sum_probs=74.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.+ +..+.|++|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999899999999999999999999999876 58999999999987
Q ss_pred e
Q psy1314 177 K 177 (275)
Q Consensus 177 ~ 177 (275)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 149
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=122.74 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=76.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 445689999999999999999999999999999999988654 5899999999999999999976 5889999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+..+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876543
No 150
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=121.84 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=76.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445689999999999999999999999999999999999999999999999999999999999987 5899999999998
Q ss_pred eee
Q psy1314 176 VKF 178 (275)
Q Consensus 176 ~~~ 178 (275)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 763
No 151
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=125.54 Aligned_cols=89 Identities=27% Similarity=0.459 Sum_probs=77.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~ 95 (275)
++|||+|||.++|+++|+++|++||+|++|.|+.+ ++|||||+|.+.++|++|++. ++..+.++.|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999987 689999999999999999995 677899999999988665
Q ss_pred cCC-----------CcceeeecCCCC
Q psy1314 96 VNP-----------LKCKIFVGGLTT 110 (275)
Q Consensus 96 ~~~-----------~~~~l~V~~l~~ 110 (275)
... ...+|||++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 321 246799999973
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.2e-18 Score=122.88 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=71.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC-----eE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICG-----KE 170 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g-----~~ 170 (275)
....++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.++ ..|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999999876 799999999999999999874 88999 99
Q ss_pred EEEEEeeeCCCC
Q psy1314 171 VDVKRVKFNPET 182 (275)
Q Consensus 171 i~v~~~~~~~~~ 182 (275)
|.|.++.+++..
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886654
No 153
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=133.49 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
+.++|||+|||+++|+++|+++|++|| +|.+|.|+.++.+++++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999997 57899999999998
Q ss_pred cccc
Q psy1314 92 VTKR 95 (275)
Q Consensus 92 ~~~~ 95 (275)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 154
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1e-18 Score=124.64 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
......++|||+|||+++|+++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++||+ +++..+.+++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 334557899999999999999999999999999999999988999999999999999999999998 5788999999999
Q ss_pred cccc
Q psy1314 90 KRVT 93 (275)
Q Consensus 90 ~~~~ 93 (275)
+.+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8774
No 155
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=127.11 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCe-EEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSI-TEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.| ..|.|+.++ +++++|||||+|.+.++|++||+..+..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3456889999999999999999999999999 889999998 89999999999999999999999966899999999999
Q ss_pred eeeCC
Q psy1314 176 VKFNP 180 (275)
Q Consensus 176 ~~~~~ 180 (275)
+..++
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98775
No 156
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.4e-18 Score=127.18 Aligned_cols=81 Identities=27% Similarity=0.452 Sum_probs=73.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~ 178 (275)
..+|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|++||+.+ +..|+|++|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 45799999999999999999999999999999998853 47999999999999999999887 5899999999999887
Q ss_pred CCCC
Q psy1314 179 NPET 182 (275)
Q Consensus 179 ~~~~ 182 (275)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6554
No 157
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=3.5e-18 Score=124.12 Aligned_cols=85 Identities=25% Similarity=0.313 Sum_probs=77.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC---eEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICG---KEVDV 173 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g---~~i~v 173 (275)
...++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ ..+.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999987 78899999999999999999999874 77887 99999
Q ss_pred EEeeeCCCCC
Q psy1314 174 KRVKFNPETM 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
.++..++.+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999887654
No 158
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=3.5e-18 Score=122.09 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=77.0
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~ 178 (275)
+++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999999999999999999999999999999999999999999999877 5899999999999987
Q ss_pred CCC
Q psy1314 179 NPE 181 (275)
Q Consensus 179 ~~~ 181 (275)
++.
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 159
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=129.85 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeec
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEV----ESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKID 88 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v----~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~ 88 (275)
..+..+|||+|||+++|+++|+++|++||+| .+|.|+.+ .+++++|||||+|.+.++|++||+.+++.|.++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999875 68999998 589999999999999999999999988899999998
Q ss_pred cccccc
Q psy1314 89 PKRVTK 94 (275)
Q Consensus 89 v~~~~~ 94 (275)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 887644
No 160
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-19 Score=127.92 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=78.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCe
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNK 85 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~ 85 (275)
...+..+.++|||+|||+++|+++|+++|+.||. |.+|.|+.++. ++++|||||+|.+.++|++||+++++.+.++
T Consensus 4 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (107)
T 2lmi_A 4 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQR 82 (107)
T ss_dssp CCCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSS
T ss_pred CcCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCe
Confidence 3456678899999999999999999999999988 89999999977 9999999999999999999999888899999
Q ss_pred eecccccccc
Q psy1314 86 KIDPKRVTKR 95 (275)
Q Consensus 86 ~i~v~~~~~~ 95 (275)
.|.|.++.++
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999887653
No 161
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=7.9e-18 Score=126.05 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
....+.++|||+|||.++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++|++ +++..+.++.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 445677899999999999999999999999999999999997 89999999999999999999999 5788999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
+++.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99876543
No 162
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=123.80 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=73.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|..+ +.+++||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999765 447899999999999999999877 5899999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 163
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=120.68 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
...+.++|||+|||+++++++|+ ++|++||+|++|.|+.++.+ ++||||+|.+.++|++||+ +++..+.+++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999998766 8899999999999999998 5788999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.+...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999876543
No 164
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=123.03 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=75.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEE-EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITE-FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|++||+..+..|.++.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45689999999999999999999999999988 888888 7899999999999999999999999668999999999988
Q ss_pred eeCC
Q psy1314 177 KFNP 180 (275)
Q Consensus 177 ~~~~ 180 (275)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-19 Score=132.35 Aligned_cols=85 Identities=22% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
....+.++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||+++++.|.++.|.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456789999999999999999999999999998666666679999999999999999999999988889999999998
Q ss_pred ccccc
Q psy1314 91 RVTKR 95 (275)
Q Consensus 91 ~~~~~ 95 (275)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87653
No 166
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=122.14 Aligned_cols=86 Identities=24% Similarity=0.452 Sum_probs=75.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
......+.++|||+|||.++|+++|+++|++||+|++|.|+.+ +.++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3455667889999999999999999999999999999999654 4689999999999999999995 57889999999
Q ss_pred cccccccccC
Q psy1314 88 DPKRVTKRVN 97 (275)
Q Consensus 88 ~v~~~~~~~~ 97 (275)
.|+++.....
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 9999876543
No 167
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=120.20 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCC-cccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQ-SRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~-~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
...++|||+|||.++|+++|+++|++||+|.+|.|+.++.++. ++|||||+|.+.++|++|++ +++..+.++.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999887766 89999999999999999999 578899999999998
Q ss_pred cccc
Q psy1314 92 VTKR 95 (275)
Q Consensus 92 ~~~~ 95 (275)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 168
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=125.74 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=79.1
Q ss_pred ccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 95 RVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 95 ~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
+.....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999876 58899999999
Q ss_pred EEeeeCC
Q psy1314 174 KRVKFNP 180 (275)
Q Consensus 174 ~~~~~~~ 180 (275)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998765
No 169
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=124.77 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
....++|||+|||+++|+++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|++||+..++.|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999987 89999999999999999999995568999999999987
Q ss_pred ee
Q psy1314 177 KF 178 (275)
Q Consensus 177 ~~ 178 (275)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=122.40 Aligned_cols=84 Identities=17% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeE-EEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeE----
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSIT-EFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKE---- 170 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~---- 170 (275)
....++|||+|||.++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++|++.++ ..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 99999999999999999999999999999999874 8899999
Q ss_pred EEEEEeeeCC
Q psy1314 171 VDVKRVKFNP 180 (275)
Q Consensus 171 i~v~~~~~~~ 180 (275)
|.|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 8888887543
No 171
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=121.98 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=76.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999987 5889999999999999999999976 5899999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876544
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.8e-18 Score=131.30 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=75.7
Q ss_pred cEEEEEEccHHHHHHHHHhCCceecCeee-cccccccccCCCcceeeecCCCCCCCHHHHHHhcccCCC---eEEEEecc
Q psy1314 59 GFAFVTFTTQKAVDDLLAAGDHYIGNKKI-DPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGS---ITEFQQPF 134 (275)
Q Consensus 59 G~afV~f~~~e~a~~al~~~~~~~~g~~i-~v~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~ 134 (275)
+++|.+|...+++-...........+..- .-...........++|||+|||+++|+++|+++|++||. |..|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp ---------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE
T ss_pred ccccccccchHHHHhhccCCCcccCCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE
Confidence 46666666665554444322112211110 001111222345689999999999999999999999999 88999999
Q ss_pred CCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 135 DKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 135 ~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
++. ++++|||||+|.+.++|++||+..+..|.++.|+|.++..+
T Consensus 82 d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 82 TRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp CSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred CCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 987 99999999999999999999993358999999999988654
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=124.35 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-eCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecCee
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIK-NDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGNKK 86 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~-~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g~~ 86 (275)
.+.+.++|||+|||+++|+++|+++|++||+ |.+|.|+ .++.+++++|||||+|.+.++|++|++.+ ...+.++.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3457889999999999999999999999998 9999998 78888999999999999999999999965 37899999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999876654
No 174
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.5e-18 Score=127.36 Aligned_cols=82 Identities=22% Similarity=0.504 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~ 94 (275)
+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||++++..|.++.|.|+++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 36799999999999999999999999999999999999999999999999999999999997778899999999998865
Q ss_pred cc
Q psy1314 95 RV 96 (275)
Q Consensus 95 ~~ 96 (275)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 175
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=7.7e-19 Score=126.59 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=76.1
Q ss_pred CcceeeecCCCC------CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCC-eE
Q psy1314 99 LKCKIFVGGLTT------EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICG-KE 170 (275)
Q Consensus 99 ~~~~l~V~~l~~------~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g-~~ 170 (275)
.+++|||+|||. ++++++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||+.+ +..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 9999999999999999999999999999999999999999999999999887 588999 99
Q ss_pred EEEEEeeeC
Q psy1314 171 VDVKRVKFN 179 (275)
Q Consensus 171 i~v~~~~~~ 179 (275)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998765
No 176
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=125.95 Aligned_cols=84 Identities=20% Similarity=0.409 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
..+.++|||+|||.++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..+.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3467899999999999999999999999999999999999899999999999999999999997 567899999999998
Q ss_pred ccccc
Q psy1314 92 VTKRV 96 (275)
Q Consensus 92 ~~~~~ 96 (275)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 87654
No 177
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=119.07 Aligned_cols=76 Identities=33% Similarity=0.647 Sum_probs=72.8
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|++|++.++..++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999998899999999876
No 178
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=123.79 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC---CceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP---KQVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~---~~~~~g~~i~v 173 (275)
....++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|++.++|++||+.+ +..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999875 789999999999999999964 27899999999
Q ss_pred EEeeeCCCCC
Q psy1314 174 KRVKFNPETM 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
.+++.++...
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876554
No 179
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=124.09 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=76.0
Q ss_pred CcceeeecCCCCCCCHHHHH---HhcccCCCeEEEEeccCCCCC---CeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVR---DYFSQYGSITEFQQPFDKSKN---MKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~---~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
..++|||+|||+++++++|+ ++|++||+|..|.|+.+..++ .++|||||+|.+.++|++||+.| +..|+|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46789999999999999999 999999999999999887643 55699999999999999999986 589999999
Q ss_pred EEEEeeeCCCC
Q psy1314 172 DVKRVKFNPET 182 (275)
Q Consensus 172 ~v~~~~~~~~~ 182 (275)
.|.++.+++..
T Consensus 94 ~V~~a~~k~~~ 104 (111)
T 2cpi_A 94 KASLGTTKYCS 104 (111)
T ss_dssp EEESCCCCSCS
T ss_pred EEEeccccccc
Confidence 99999988743
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=120.27 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=74.4
Q ss_pred CCcceeeecCCCCCCCHHHHH----HhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVD 172 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~ 172 (275)
...++|||+|||+++++++|+ ++|++||+|..|.|+.++.+ ++||||+|.+.++|++||+.+ +..|.|++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345789999999999999999 99999999999999998776 789999999999999999987 5889999999
Q ss_pred EEEeeeCCCC
Q psy1314 173 VKRVKFNPET 182 (275)
Q Consensus 173 v~~~~~~~~~ 182 (275)
|.++++++..
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 181
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.6e-18 Score=118.51 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=74.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+...+..+.|++|.|.+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 57899999999999999999999999999999999998999999999999999999999943468999999999988754
No 182
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-19 Score=127.47 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
....+.++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++||++++..+.++.|.|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 44557889999999999999999999999999888 66777778999999999999999999999977889999999999
Q ss_pred ccccccCC
Q psy1314 91 RVTKRVNP 98 (275)
Q Consensus 91 ~~~~~~~~ 98 (275)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99776544
No 183
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=2.6e-18 Score=129.52 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=78.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999987 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 887653
No 184
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=120.85 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=73.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|+.|. .|.++.++.++.++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44568999999999999999999999773 6777888888999999999999999999999976 5899999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
++++.+.
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9887653
No 185
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=129.77 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCc----eec
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDH----YIG 83 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~--~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~----~~~ 83 (275)
......++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|++||+. ++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34466789999999999999999999999999977 99999999999999999999999 99999875 566 899
Q ss_pred Ceeeccccccccc
Q psy1314 84 NKKIDPKRVTKRV 96 (275)
Q Consensus 84 g~~i~v~~~~~~~ 96 (275)
++.|.|+++.+..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999887653
No 186
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=117.60 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=75.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++| .|..|.|+.+ .+++++|||||+|.+.++|++||+ + +..|.|++|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999998 788999999999999999999999 6 5899999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+..++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987754
No 187
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=121.29 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCcceeeecCCCC-CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEE
Q psy1314 98 PLKCKIFVGGLTT-EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDV 173 (275)
Q Consensus 98 ~~~~~l~V~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v 173 (275)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ ++||||+|++.++|++||+.++ ..|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4568899999999 9999999999999999999999865 5799999999999999999763 5699999999
Q ss_pred EEeeeCCCC
Q psy1314 174 KRVKFNPET 182 (275)
Q Consensus 174 ~~~~~~~~~ 182 (275)
.++..+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876543
No 188
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.9e-17 Score=119.90 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.+ +..|.+++|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456889999999999999999999999999999987 459999999999999999986 58899999999999
Q ss_pred eeCCCCCCC
Q psy1314 177 KFNPETMGS 185 (275)
Q Consensus 177 ~~~~~~~~~ 185 (275)
.++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 987765443
No 189
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.1e-18 Score=132.89 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPK 90 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~ 90 (275)
..+.+.++|||+|||+++|+++|+++|++|| |++|.|+.++. ++++|||||+|.+.++|++||+++.+.|.++.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3456678999999999999999999999999 67999999975 999999999999999999999777889999999998
Q ss_pred cccccc
Q psy1314 91 RVTKRV 96 (275)
Q Consensus 91 ~~~~~~ 96 (275)
.+....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 876543
No 190
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=121.58 Aligned_cols=85 Identities=13% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCC-eEEEEec-cCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGS-ITEFQQP-FDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVD 172 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~-v~~v~i~-~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~ 172 (275)
...++|||+|||+++++++|+++|++||. |..|.|+ .++.++.++|||||+|.+.++|++|++.++ ..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34689999999999999999999999998 9999998 888888999999999999999999999873 789999999
Q ss_pred EEEeeeCCCC
Q psy1314 173 VKRVKFNPET 182 (275)
Q Consensus 173 v~~~~~~~~~ 182 (275)
|.++.+++..
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=119.40 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh---CCceecCee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA---GDHYIGNKK 86 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~---~~~~~~g~~ 86 (275)
.....+.++|||+|||+++|+++|+++|++||.|++|.|+++ +|||||+|.+.++|++|++. +...+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 455567889999999999999999999999999999999875 68999999999999999985 356899999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|.++..+..
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999876544
No 192
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6.5e-18 Score=125.37 Aligned_cols=81 Identities=25% Similarity=0.449 Sum_probs=74.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999987 5899999999988
Q ss_pred ee
Q psy1314 176 VK 177 (275)
Q Consensus 176 ~~ 177 (275)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 193
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=119.92 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+.+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|++|++.+ +..|.+++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44568999999999999999999999999999999999876 889999999999999999999976 5899999999988
Q ss_pred ee
Q psy1314 176 VK 177 (275)
Q Consensus 176 ~~ 177 (275)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 194
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=118.62 Aligned_cols=82 Identities=24% Similarity=0.476 Sum_probs=75.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCC-eeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNM-KKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~-~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
..++|||+|||.++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++|++.+ +..+.|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999887765 8999999999999999999976 58999999999999
Q ss_pred eeCC
Q psy1314 177 KFNP 180 (275)
Q Consensus 177 ~~~~ 180 (275)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 195
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=2.3e-18 Score=130.89 Aligned_cols=90 Identities=26% Similarity=0.420 Sum_probs=81.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i 87 (275)
...+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.+++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345556788999999999999999999999999999999999988999999999999999999999985 6789999999
Q ss_pred cccccccccCC
Q psy1314 88 DPKRVTKRVNP 98 (275)
Q Consensus 88 ~v~~~~~~~~~ 98 (275)
.|+++......
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99998765543
No 196
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-18 Score=127.65 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=77.0
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKF 178 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~ 178 (275)
..++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||...+..|.|+.|.|.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 35889999999999999999999999999999999999999999999999999999999993346899999999999987
Q ss_pred CCCC
Q psy1314 179 NPET 182 (275)
Q Consensus 179 ~~~~ 182 (275)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 7543
No 197
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=131.05 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=75.5
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCC--CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
..++|||+|||+++++++|+++|++|| .|..|.|+.|+.+++++|||||+|.+.++|++||+.++ ..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999984 899999999999
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 198
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=127.38 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=75.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999975 56789999999
Q ss_pred cccc
Q psy1314 89 PKRV 92 (275)
Q Consensus 89 v~~~ 92 (275)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 8764
No 199
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=2.3e-17 Score=113.81 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~ 92 (275)
.+..|||+||++.+||++|+++|.+||+|.++.++. ++|||||+|.++++|++|++. ++..+.+++|.|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 477899999999999999999999999999999976 589999999999999999986 577999999998877
No 200
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.7e-18 Score=116.91 Aligned_cols=75 Identities=36% Similarity=0.687 Sum_probs=70.6
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
+|||+|||+++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++..+..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999985568999999999864
No 201
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=121.94 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=71.8
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecC
Q psy1314 9 AGPGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGN 84 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g 84 (275)
.....+++++|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|.+.++|++||+.+ ...+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344567889999999999 9999999999999999999999876 479999999999999999853 356999
Q ss_pred eeeccccccccc
Q psy1314 85 KKIDPKRVTKRV 96 (275)
Q Consensus 85 ~~i~v~~~~~~~ 96 (275)
++|.|.++....
T Consensus 82 r~l~V~~a~~~~ 93 (102)
T 1x4d_A 82 KPVRVHLSQKYK 93 (102)
T ss_dssp EECEEEEECCCT
T ss_pred cEEEEEECCCCC
Confidence 999999987543
No 202
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=122.15 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.++ ..|.|++|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456889999999999999999999999999988888888899999999999999999999998875 899999999999
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 203
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=119.99 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC---ceecCee
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD---HYIGNKK 86 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~---~~~~g~~ 86 (275)
.....++++|||+|||.++|+++|+++|++||+|++|.|++. ||+|||+|.+.++|.+|++.++ ..+.|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 344567899999999999999999999999999999999853 6899999999999999998642 3588999
Q ss_pred eccccccccc
Q psy1314 87 IDPKRVTKRV 96 (275)
Q Consensus 87 i~v~~~~~~~ 96 (275)
|.|+++..++
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999987653
No 204
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.2e-18 Score=123.68 Aligned_cols=83 Identities=29% Similarity=0.573 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~ 91 (275)
...+.++|||+|||.++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999 88899999999888
Q ss_pred ccccc
Q psy1314 92 VTKRV 96 (275)
Q Consensus 92 ~~~~~ 96 (275)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 86543
No 205
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.7e-18 Score=124.66 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecC
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGN 84 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g 84 (275)
.......+.++|||+|||+++|+++|+++|++||.|++|.|+++ ||||||+|.+.++|++|++.+ +..+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455667899999999999999999999999999999999975 689999999999999999864 357999
Q ss_pred eeecccccccccCC
Q psy1314 85 KKIDPKRVTKRVNP 98 (275)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (275)
++|.|.++..+...
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999998765443
No 206
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=121.24 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE--------EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
....++|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++.+ +..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 445689999999999999999999999999999 999999999999999999999999999999976 58899
Q ss_pred CeEEEEEEee
Q psy1314 168 GKEVDVKRVK 177 (275)
Q Consensus 168 g~~i~v~~~~ 177 (275)
|++|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999998874
No 207
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=119.31 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457899999999999999999999999987 55655 67889999999999999999999977 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.+++.
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987654
No 208
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.1e-18 Score=117.40 Aligned_cols=75 Identities=29% Similarity=0.746 Sum_probs=71.4
Q ss_pred eeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
+|||+|||.++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++.++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999998778999999999864
No 209
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.9e-17 Score=129.23 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=79.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
......++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+. ++..+.+++|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999985 678999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
.++.+...
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99876543
No 210
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.7e-17 Score=120.85 Aligned_cols=80 Identities=16% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 8899999999999999999999986 5899999999998
Q ss_pred ee
Q psy1314 176 VK 177 (275)
Q Consensus 176 ~~ 177 (275)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 211
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.1e-17 Score=118.51 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=75.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999874 6789999999999999999999986 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 212
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=121.88 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.5
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
.++|||+|||+++++++|+++|++| .|..|.|+.++. ++++|||||+|.+.++|++||+..++.|.++.|+|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 4789999999999999999999999 899999999876 88999999999999999999976579999999999888765
Q ss_pred C
Q psy1314 180 P 180 (275)
Q Consensus 180 ~ 180 (275)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 213
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=121.92 Aligned_cols=86 Identities=21% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
.......+.++|||+|||.++|+++|+++|++||+|++|.|+.++ +.++|||||+|.+.++|++|++ +++..+.++.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345566778999999999999999999999999999999999885 3589999999999999999998 4788999999
Q ss_pred ecccccccc
Q psy1314 87 IDPKRVTKR 95 (275)
Q Consensus 87 i~v~~~~~~ 95 (275)
|.|+++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999988654
No 214
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=121.59 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec-----
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG----- 83 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~----- 83 (275)
.....+.++|||+|||+++|+++|+++|++||+|.+|.|+.++ +++++|||||+|.+.++|++||+. ++..+.
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445678899999999999999999999999999999999997 899999999999999999999984 566674
Q ss_pred ---Ceeecccccc
Q psy1314 84 ---NKKIDPKRVT 93 (275)
Q Consensus 84 ---g~~i~v~~~~ 93 (275)
+++|.|.++.
T Consensus 98 ~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 98 SAPTEPLLCKFSG 110 (114)
T ss_dssp CCCSSCBEEEECC
T ss_pred cCCCCceeEEccC
Confidence 4455555544
No 215
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=122.19 Aligned_cols=86 Identities=16% Similarity=0.337 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeeCCCCC---CcccEEEEEEccHHHHHHHHHh-CCceec
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEIN---DYFSQYGEVESISIKNDPHTG---QSRGFAFVTFTTQKAVDDLLAA-GDHYIG 83 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~tg---~~~G~afV~f~~~e~a~~al~~-~~~~~~ 83 (275)
....+.++|||+|||+++++++|+ ++|++||+|++|.|+.++.++ +++|||||+|.+.++|++||+. ++..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345568899999999999999999 999999999999999987754 5669999999999999999996 788999
Q ss_pred Ceeeccccccccc
Q psy1314 84 NKKIDPKRVTKRV 96 (275)
Q Consensus 84 g~~i~v~~~~~~~ 96 (275)
+++|.|+++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999987654
No 216
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.4e-17 Score=129.64 Aligned_cols=86 Identities=27% Similarity=0.393 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|++||+ +++..|.++.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999998 47889999999999
Q ss_pred ccccccC
Q psy1314 91 RVTKRVN 97 (275)
Q Consensus 91 ~~~~~~~ 97 (275)
++..+..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876543
No 217
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=118.92 Aligned_cols=88 Identities=24% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
........+.++|||+|||.++|+++|+++|+.| ..|.++.++.+++++|||||+|.+.++|++||+ +++..|.++
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3345566788999999999999999999999977 478888888899999999999999999999998 578899999
Q ss_pred eecccccccccC
Q psy1314 86 KIDPKRVTKRVN 97 (275)
Q Consensus 86 ~i~v~~~~~~~~ 97 (275)
.|.|+++.++..
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2fc8_A 83 KVTLDWAKPKGE 94 (102)
T ss_dssp ECEEEECCCCCS
T ss_pred EEEEEEecCCCC
Confidence 999999977654
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=118.88 Aligned_cols=84 Identities=17% Similarity=0.351 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||+ +++..+.++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456778999999999999999999999999976 56666 678999999999999999999999 567899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999876543
No 219
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.3e-17 Score=123.42 Aligned_cols=83 Identities=27% Similarity=0.413 Sum_probs=75.8
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKF 178 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~ 178 (275)
..++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+..+..|.|+.|.|.+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35889999999999999999999999999999999998899999999999999999999994336899999999999886
Q ss_pred CCC
Q psy1314 179 NPE 181 (275)
Q Consensus 179 ~~~ 181 (275)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 220
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=129.07 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=77.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE--EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c----eeCCe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE--FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q----VICGK 169 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~----~~~g~ 169 (275)
....++|||+|||+++++++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|++||+.++ . .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 445689999999999999999999999999977 99999999999999999999999 9999999885 6 89999
Q ss_pred EEEEEEeeeCCCC
Q psy1314 170 EVDVKRVKFNPET 182 (275)
Q Consensus 170 ~i~v~~~~~~~~~ 182 (275)
+|.|.++.++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876544
No 221
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=118.64 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=72.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecC----
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN---- 84 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g---- 84 (275)
.+.....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|.+.++|++||+. ++..|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 344567889999999999999999999999999999999886 7999999999999999995 5778999
Q ss_pred -eeecccccccccC
Q psy1314 85 -KKIDPKRVTKRVN 97 (275)
Q Consensus 85 -~~i~v~~~~~~~~ 97 (275)
+.|.|+++.++..
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 9999999876543
No 222
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=117.17 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC---CceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP---KQVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~---~~~~~g~~i~v 173 (275)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|++.++|++|++.+ ...|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345688999999999999999999999999999998865 789999999999999999865 36799999999
Q ss_pred EEeeeCCCCC
Q psy1314 174 KRVKFNPETM 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
.+++.+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998776543
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=9.6e-18 Score=120.79 Aligned_cols=83 Identities=17% Similarity=0.389 Sum_probs=73.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCC-CCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDK-SKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++|| |..|.|+.++ .+++++|||||+|.+.++|++||...+..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34568999999999999999999999999 9999999998 689999999999999999999994336899999999999
Q ss_pred eeeCC
Q psy1314 176 VKFNP 180 (275)
Q Consensus 176 ~~~~~ 180 (275)
+..++
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 88764
No 224
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=9.5e-18 Score=138.74 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G--~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
..++|||+|||+++|+++|+++|++|| +|++|.|+.++.|++++|||||+|.+.++|++||+. +++.|.++.|.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999995 57899999999888
Q ss_pred ccc
Q psy1314 92 VTK 94 (275)
Q Consensus 92 ~~~ 94 (275)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 225
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.6e-18 Score=120.73 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=73.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.+ +..|.+++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999998899999999999999999999999976 58999999999876
Q ss_pred e
Q psy1314 177 K 177 (275)
Q Consensus 177 ~ 177 (275)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 226
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=8.1e-18 Score=125.74 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeE--EEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSIT--EFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKR 175 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~--~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~ 175 (275)
...++|||+|||+++|+++|+++|++| .|+ .|.|+.++. ++++|||||+|.+.++|++||+.++..|.++.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456789999999999999999999999 677 899999987 8999999999999999999999888999999999988
Q ss_pred eeeC
Q psy1314 176 VKFN 179 (275)
Q Consensus 176 ~~~~ 179 (275)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 227
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-19 Score=131.52 Aligned_cols=86 Identities=27% Similarity=0.353 Sum_probs=78.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEE--------EEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~ 167 (275)
....++|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.+ +..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345688999999999999999999999999998 899999888999999999999999999999987 48899
Q ss_pred CeEEEEEEeeeCCCC
Q psy1314 168 GKEVDVKRVKFNPET 182 (275)
Q Consensus 168 g~~i~v~~~~~~~~~ 182 (275)
|++|.|.++.+++..
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887654
No 228
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-17 Score=117.38 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecCeee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGNKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g~~i 87 (275)
....++++|||+|||+++++++|+++|++||+|.+|.|+++ ||||||+|.+.++|++|++.+ ...+.+++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567889999999999999999999999999999999864 689999999999999999853 346999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++..+.
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999987654
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-18 Score=122.97 Aligned_cols=83 Identities=24% Similarity=0.484 Sum_probs=77.4
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.|++|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4578999999999999999999999999999999999889999999999999999999999877 588999999999998
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7654
No 230
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=123.28 Aligned_cols=82 Identities=12% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCC---eEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGS---ITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVK 174 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~ 174 (275)
...++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|++||+..++.|.++.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45688999999999999999999999998 89999999877 899999999999999999999955689999999999
Q ss_pred EeeeCC
Q psy1314 175 RVKFNP 180 (275)
Q Consensus 175 ~~~~~~ 180 (275)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987653
No 231
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=119.96 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec
Q psy1314 11 PGRNDERKLFVGGLHRNT------GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG 83 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~ 83 (275)
......++|||+|||+++ |+++|+++|++||+|.+|.|+ +.+++++|||||+|.+.++|++||+. ++..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 789999999999999999998 36889999999999999999999995 678999
Q ss_pred Ce-eecccccccc
Q psy1314 84 NK-KIDPKRVTKR 95 (275)
Q Consensus 84 g~-~i~v~~~~~~ 95 (275)
++ +|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999988643
No 232
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=116.30 Aligned_cols=79 Identities=28% Similarity=0.515 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.+ +..|++++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999987 579999999999999999877 4789999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+.+++...
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 233
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.3e-17 Score=115.07 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=67.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
+..|+|+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.|+ ..|.+++|.|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999875 58999999999999999999985 89999999999884
No 234
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=114.88 Aligned_cols=78 Identities=19% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45568999999999999999999999999999999873 39999999999999999886 5899999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
+.+++..
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9877654
No 235
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=111.98 Aligned_cols=78 Identities=22% Similarity=0.439 Sum_probs=70.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh--CCceecCee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA--GDHYIGNKK 86 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~--~~~~~~g~~ 86 (275)
..+...+.++|||+|||.++|+++|+++|++||+|.+|.++++ +|||||+|.+.++|++|++. ++..+.+++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3455677889999999999999999999999999999999874 68999999999999999995 567999999
Q ss_pred eccccc
Q psy1314 87 IDPKRV 92 (275)
Q Consensus 87 i~v~~~ 92 (275)
|.|+++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999876
No 236
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.9e-17 Score=121.19 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=69.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCC-CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
...++|||+|||+++++++|+++|++|| +|..+.|..+ .++|||||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 8999998643 36899999999999999999987 4899999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+...+.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 876543
No 237
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=6.5e-18 Score=119.17 Aligned_cols=79 Identities=23% Similarity=0.479 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~~~~~ 95 (275)
++|||+|||.++++++|+++|++||+|++|.|+.++.+++++|||||+|.+.+ |++|++. ++..+.++.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 9999986 577899999999998765
Q ss_pred c
Q psy1314 96 V 96 (275)
Q Consensus 96 ~ 96 (275)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 238
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=113.82 Aligned_cols=79 Identities=27% Similarity=0.470 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v 89 (275)
....+.++|||+|||.++|+++|+++|++||+|++|.|+ ++||||+|.+.++|++|++ +++..+.+++|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 346778999999999999999999999999999999997 4799999999999999997 5677999999999
Q ss_pred cccccccC
Q psy1314 90 KRVTKRVN 97 (275)
Q Consensus 90 ~~~~~~~~ 97 (275)
+++.++..
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99876654
No 239
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=121.66 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v 173 (275)
..+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|++.++|++|++.++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345688999999999999999999999999999999875 7899999999999999999763 5799999999
Q ss_pred EEeeeCCCCC
Q psy1314 174 KRVKFNPETM 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
.+++.++...
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998876654
No 240
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=113.73 Aligned_cols=81 Identities=25% Similarity=0.495 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~ 91 (275)
.....++|||+|||+++|+++|+++|++||+|.+| +.++.+++ ||||+|.+.++|++||+++++.+.++.|.|++
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 34567899999999999999999999999999987 55556665 99999999999999999778899999999998
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+..+..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 865543
No 241
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=2.7e-17 Score=118.82 Aligned_cols=83 Identities=23% Similarity=0.520 Sum_probs=76.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++ .+..|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 346899999999999999999999999999999999998 89999999999999999999999 6688999999999998
Q ss_pred eCCCC
Q psy1314 178 FNPET 182 (275)
Q Consensus 178 ~~~~~ 182 (275)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 87654
No 242
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=116.98 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v 173 (275)
..++++|||+|||+++|+++|+++|++||.|.+|.+++. ||+|||+|++.++|.+|++.++ ..|.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345788999999999999999999999999999998853 7899999999999999999874 3589999999
Q ss_pred EEeeeCC
Q psy1314 174 KRVKFNP 180 (275)
Q Consensus 174 ~~~~~~~ 180 (275)
.+++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9987653
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=114.12 Aligned_cols=72 Identities=13% Similarity=0.308 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe-ee
Q psy1314 16 ERKLFVGGLHRNT------GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK-KI 87 (275)
Q Consensus 16 ~~~l~v~~Lp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~-~i 87 (275)
+++|||+|||.++ |+++|+++|++||+|.+|.|+ +.+++++|||||+|.+.++|++|++. ++..+.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 46889999999999999999999995 57788888 77
Q ss_pred cc
Q psy1314 88 DP 89 (275)
Q Consensus 88 ~v 89 (275)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 244
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=124.63 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCe----EEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSI----TEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDV 173 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v 173 (275)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|++||+++++.|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346789999999999999999999999875 68999888 4799999999999999999999998778999999999
Q ss_pred EEeeeC
Q psy1314 174 KRVKFN 179 (275)
Q Consensus 174 ~~~~~~ 179 (275)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888655
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=119.85 Aligned_cols=82 Identities=26% Similarity=0.525 Sum_probs=74.1
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.+ +..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455689999999999999999999999999999999876 789999999999999999886 589999999999
Q ss_pred EeeeCCCCC
Q psy1314 175 RVKFNPETM 183 (275)
Q Consensus 175 ~~~~~~~~~ 183 (275)
++.+++...
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999877654
No 246
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.5e-18 Score=119.16 Aligned_cols=81 Identities=21% Similarity=0.477 Sum_probs=71.9
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~~ 179 (275)
++|||+|||.++++++|+++|++||+|..|.++.++.++.++|||||+|.+.+ |++|++.++ ..+.|++|.|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 999999984 8899999999999877
Q ss_pred CCC
Q psy1314 180 PET 182 (275)
Q Consensus 180 ~~~ 182 (275)
+..
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 247
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=113.11 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=73.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~ 86 (275)
.+.....+.++|||+|||.++|+++|+++|++||.|++|.|+++ ||||+|.+.++|++|++ +++..+.++.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34566788899999999999999999999999999999999743 99999999999999997 5788999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999976544
No 248
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=114.43 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceec--Ceee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIG--NKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~--g~~i 87 (275)
....+.++|||+|||.++|+++|+++|++||+|++|.++.+ +|||||+|.+.++|++|++ +++..+. ++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 44567799999999999999999999999999999999864 6799999999999999998 5778898 8999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++.++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 249
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=122.88 Aligned_cols=80 Identities=26% Similarity=0.534 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.++ ..|.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999998875 889999999986
Q ss_pred e
Q psy1314 176 V 176 (275)
Q Consensus 176 ~ 176 (275)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 250
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=121.48 Aligned_cols=83 Identities=12% Similarity=0.234 Sum_probs=72.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecC
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN 84 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g 84 (275)
.....+.++|||+|||+++++++|+ ++|++||+|.+|.+.. +++++|||||+|.+.++|++|++. ++..+.+
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445668899999999999999876 6999999999988753 578899999999999999999975 5779999
Q ss_pred eeecccccccc
Q psy1314 85 KKIDPKRVTKR 95 (275)
Q Consensus 85 ~~i~v~~~~~~ 95 (275)
++|.|.++..+
T Consensus 100 r~l~V~~a~~~ 110 (127)
T 2a3j_A 100 NPLVITFSETP 110 (127)
T ss_dssp SCCEEEECCCC
T ss_pred CEEEEEEccCc
Confidence 99999998754
No 251
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=117.70 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~v 173 (275)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ ||||||+|++.++|++|++.++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998764 7899999999999999999762 4699999999
Q ss_pred EEeeeCCCCC
Q psy1314 174 KRVKFNPETM 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
.++..+....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998776543
No 252
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=6.4e-17 Score=128.50 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
...+.++|||+|||+++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+. ++..+.++.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 899999999999999999999994 6779999999999
Q ss_pred cccccc
Q psy1314 91 RVTKRV 96 (275)
Q Consensus 91 ~~~~~~ 96 (275)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 886543
No 253
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=2.5e-17 Score=121.68 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=63.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeE-----E
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKE-----V 171 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~-----i 171 (275)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.| +..|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999865 79999999999999999987 48899988 5
Q ss_pred EEEEeee
Q psy1314 172 DVKRVKF 178 (275)
Q Consensus 172 ~v~~~~~ 178 (275)
+|....+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5554444
No 254
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=8.1e-17 Score=120.51 Aligned_cols=85 Identities=16% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999998 8899999999999999999999976 5889999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876554
No 255
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=116.25 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=72.9
Q ss_pred cccccCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeE
Q psy1314 92 VTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKE 170 (275)
Q Consensus 92 ~~~~~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~ 170 (275)
.........++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.++ ..|.|++
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 333445567899999999999999999999999887665 3467889999999999999999999875 8899999
Q ss_pred EEEEEeeeCCC
Q psy1314 171 VDVKRVKFNPE 181 (275)
Q Consensus 171 i~v~~~~~~~~ 181 (275)
|.|.++.++..
T Consensus 83 l~v~~a~~~~~ 93 (96)
T 1fjc_A 83 VSLYYTGEKGG 93 (96)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEcCCCCC
Confidence 99999887654
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=118.39 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCcceeeecCCCCCC------CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCe
Q psy1314 97 NPLKCKIFVGGLTTEI------SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGK 169 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~ 169 (275)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ +.++.++|||||+|.+.++|++||+.+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 789999999999999999988 467889999999999999999999987 5889998
Q ss_pred -EEEEEEeeeCC
Q psy1314 170 -EVDVKRVKFNP 180 (275)
Q Consensus 170 -~i~v~~~~~~~ 180 (275)
+|.|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987543
No 257
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=115.05 Aligned_cols=77 Identities=10% Similarity=0.252 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
.+...++|||+|||.++|+++|+++|++||+|.+|.++. ++|||||+|.+.++|++|++. ++..+.++.|.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999999999999983 478999999999999999975 7889999999999
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8864
No 258
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.5e-18 Score=117.56 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=69.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVK 174 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~ 174 (275)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.++ ..|.++.|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 346799999999999999999999999999999999999999999999999999999999999864 66777766554
No 259
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=119.37 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=74.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998853 47999999999999999999986 5889999999999
Q ss_pred eeeCC
Q psy1314 176 VKFNP 180 (275)
Q Consensus 176 ~~~~~ 180 (275)
+.+++
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 88653
No 260
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.4e-17 Score=119.70 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCC---CCcccEEEEEEccHHHHHHHHHhCCceecCeee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHT---GQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKI 87 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~t---g~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i 87 (275)
....+.++|||+|||+++|+++|+++|++||+|. +.++.++.+ ++++|||||+|.+.++|++||+.+ +.++|+.+
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~ 80 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLY 80 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEE
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEE
Confidence 3456789999999999999999999999999999 888888777 799999999999999999999986 45788887
Q ss_pred cccccc
Q psy1314 88 DPKRVT 93 (275)
Q Consensus 88 ~v~~~~ 93 (275)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776543
No 261
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-17 Score=124.95 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=74.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEee
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVK 177 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~ 177 (275)
...++|||+|||+++++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||+..+..|.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 34589999999999999999999999999988777777788999999999999999999999944689999999999987
Q ss_pred eCC
Q psy1314 178 FNP 180 (275)
Q Consensus 178 ~~~ 180 (275)
.+.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 262
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=7.3e-17 Score=118.16 Aligned_cols=90 Identities=19% Similarity=0.462 Sum_probs=74.7
Q ss_pred cCeeeccccccccc----CCCcceeeecCCCCC-CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHH
Q psy1314 83 GNKKIDPKRVTKRV----NPLKCKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQ 157 (275)
Q Consensus 83 ~g~~i~v~~~~~~~----~~~~~~l~V~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~ 157 (275)
.+..|.+..+.... ....++|||+|||+. +++++|+++|++||.|..|.| +++||||+|.+.++|++
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHH
Confidence 44556555543322 223479999999999 999999999999999999988 47899999999999999
Q ss_pred HHhcC-CceeCCeEEEEEEeeeCC
Q psy1314 158 VLANP-KQVICGKEVDVKRVKFNP 180 (275)
Q Consensus 158 Ai~~~-~~~~~g~~i~v~~~~~~~ 180 (275)
||+.+ +..|+|++|.|.++..+.
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHcCCCEECCeEEEEEECCCCC
Confidence 99886 589999999999997543
No 263
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-18 Score=123.85 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999843322222236778999999999999999999987 58899999999999
Q ss_pred eeCCCCCC
Q psy1314 177 KFNPETMG 184 (275)
Q Consensus 177 ~~~~~~~~ 184 (275)
..+..+..
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 98766543
No 264
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=115.06 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=72.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i 87 (275)
......+.++|||+|||+++|+++|+++|++||+|++|.|+++ +|||||+|.+.++|++|++. ++..+.+++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3455677889999999999999999999999999999999865 68999999999999999965 6789999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++.++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999987643
No 265
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=112.69 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=70.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++.+ +..|.+++|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44568999999999999999999999999999999973 38999999999999999986 5899999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
+.++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9877543
No 266
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=116.29 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=72.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||..+++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999999854 789999999999999999887 5889999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 98876543
No 267
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=111.91 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
...+.+.++|||+|||.++|+++|+++|++||+|.+|.|+++ ||||+|.+.++|++|++ +++..+.++.|.
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345677899999999999999999999999999999999843 99999999999999998 578899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.+...
T Consensus 75 v~~a~~~~~ 83 (90)
T 2dnp_A 75 VELSTKGQK 83 (90)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.5e-17 Score=118.83 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee--------C
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI--------C 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~--------~ 167 (275)
....++|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 88999999999999999999999874 667 5
Q ss_pred CeEEEEEEeeeC
Q psy1314 168 GKEVDVKRVKFN 179 (275)
Q Consensus 168 g~~i~v~~~~~~ 179 (275)
+++|.|.++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999988743
No 269
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-18 Score=127.86 Aligned_cols=86 Identities=26% Similarity=0.432 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCcee
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYI 82 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~ 82 (275)
+..+.++|||+|||.++|+++|+++|++||+|.+ |.|+.++.+++++|||||+|.+.++|++||+. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567889999999999999999999999999998 99999988999999999999999999999994 67899
Q ss_pred cCeeecccccccccC
Q psy1314 83 GNKKIDPKRVTKRVN 97 (275)
Q Consensus 83 ~g~~i~v~~~~~~~~ 97 (275)
.++.|.|+++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876644
No 270
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=115.72 Aligned_cols=80 Identities=15% Similarity=0.371 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
.....++|||+|||.++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|++||+ +++..+.++.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999986 6899999999999999996 47889999999999
Q ss_pred ccccccC
Q psy1314 91 RVTKRVN 97 (275)
Q Consensus 91 ~~~~~~~ 97 (275)
++..+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9876544
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=121.84 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
..+.++|||+|||.++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++||+. ++..+.++.|.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999985443333323788999999999999999999985 67899999999999
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 876644
No 272
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.2e-16 Score=114.19 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||+|.+.++|++||+ +++..+.++.|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 34456789999999999999999999999999999999873 499999999999999998 478899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999876544
No 273
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=114.26 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.......++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++. ++..+.++.|.
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34556688999999999999999999999999997 666654 5789999999999999999965 78899999999
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|+++.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99987653
No 274
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=5.5e-17 Score=114.19 Aligned_cols=80 Identities=30% Similarity=0.487 Sum_probs=63.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~ 91 (275)
...+..+|||+|||+++|+++|+++|++||+|++|.|+.+ ++|||||+|.+.++|+++.. ....+.++.|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEE
Confidence 4567889999999999999999999999999999999875 68999999999999985432 23456799999998
Q ss_pred cccccC
Q psy1314 92 VTKRVN 97 (275)
Q Consensus 92 ~~~~~~ 97 (275)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 876543
No 275
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=113.24 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=69.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccC--CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQY--GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v 173 (275)
....++|||+|||+.+++++|+++|++| |.|..|.+. ++||||+|.+.++|++||+.+ +..|.+++|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999999875 679999999999999999976 58999999999
Q ss_pred EEeeeCCC
Q psy1314 174 KRVKFNPE 181 (275)
Q Consensus 174 ~~~~~~~~ 181 (275)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 276
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=115.24 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeC--CeEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVIC--GKEVDVK 174 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~--g~~i~v~ 174 (275)
...++|||+|||.++++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|++.+ +..|. +++|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998754 789999999999999999986 58889 9999999
Q ss_pred EeeeCCC
Q psy1314 175 RVKFNPE 181 (275)
Q Consensus 175 ~~~~~~~ 181 (275)
++++++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988654
No 277
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-18 Score=122.24 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=74.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|++||+ + +..|.|++|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999887 677777788899999999999999999999 6 58899999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
.++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 278
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.2e-17 Score=113.32 Aligned_cols=78 Identities=26% Similarity=0.552 Sum_probs=68.5
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKF 178 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~ 178 (275)
..++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.+++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999865 689999999999999876444 4667999999999887
Q ss_pred CCCC
Q psy1314 179 NPET 182 (275)
Q Consensus 179 ~~~~ 182 (275)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 279
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=116.28 Aligned_cols=77 Identities=30% Similarity=0.519 Sum_probs=70.9
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeeeC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFN 179 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~~ 179 (275)
++|||+|||.++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|++|++.+ +..+.|++|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 5899999999999999999987 48899999999999887
Q ss_pred CCC
Q psy1314 180 PET 182 (275)
Q Consensus 180 ~~~ 182 (275)
+..
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 280
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=8.9e-17 Score=117.57 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
.+....+|||+|||+++|+++|+++|++|| +|..+.|+.+ .++|||||+|.+.++|++||+. ++..+.++.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 8999988643 4789999999999999999975 678999999999
Q ss_pred cccccc
Q psy1314 90 KRVTKR 95 (275)
Q Consensus 90 ~~~~~~ 95 (275)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 988643
No 281
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=118.02 Aligned_cols=80 Identities=10% Similarity=0.186 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC---CceecCee
Q psy1314 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG---DHYIGNKK 86 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~---~~~~~g~~ 86 (275)
....++++|||+|||++ +|+++|+++|++||+|.+|.|++. +|||||+|.+.++|++|++.+ ...+.|++
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34567889999999998 999999999999999999999753 689999999999999999853 45799999
Q ss_pred eccccccccc
Q psy1314 87 IDPKRVTKRV 96 (275)
Q Consensus 87 i~v~~~~~~~ 96 (275)
|.|.++..+.
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999986543
No 282
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=120.53 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCC---eEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGS---ITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDV 173 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v 173 (275)
....++|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+..+..|.++.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 345688999999999999999999999988 89999999987 89999999999999999999994468899999999
Q ss_pred EEeeeCC
Q psy1314 174 KRVKFNP 180 (275)
Q Consensus 174 ~~~~~~~ 180 (275)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9887653
No 283
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=109.76 Aligned_cols=76 Identities=26% Similarity=0.476 Sum_probs=68.8
Q ss_pred cCCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C-ceeCCeEEEE
Q psy1314 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K-QVICGKEVDV 173 (275)
Q Consensus 96 ~~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~-~~~~g~~i~v 173 (275)
.....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.+ + ..+.|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456689999999999999999999999999999999864 789999999999999999976 5 8899999999
Q ss_pred EEee
Q psy1314 174 KRVK 177 (275)
Q Consensus 174 ~~~~ 177 (275)
.+++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 284
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.4e-16 Score=111.28 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
......+.++|||+|||+++|+++|+++|++| |.|.+|.++ +|||||+|.+.++|++||+ +++..+.++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445678899999999999999999999999 889988875 4699999999999999999 678899999
Q ss_pred eecccccccccC
Q psy1314 86 KIDPKRVTKRVN 97 (275)
Q Consensus 86 ~i~v~~~~~~~~ 97 (275)
.|.|+++.++..
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999876543
No 285
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=127.39 Aligned_cols=84 Identities=35% Similarity=0.688 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
...++|||+|||.++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+++.+.|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999998899999999999987
Q ss_pred cccC
Q psy1314 94 KRVN 97 (275)
Q Consensus 94 ~~~~ 97 (275)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7654
No 286
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=7.2e-17 Score=115.36 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCe
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNK 85 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~ 85 (275)
.+..+.++|||+|||.++++++|+ ++|++||.|.+|.++. ++.++|||||+|.+.++|++|++. ++..+.++
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 456778999999999999999999 9999999999999874 467889999999999999999984 78899999
Q ss_pred eeccccccccc
Q psy1314 86 KIDPKRVTKRV 96 (275)
Q Consensus 86 ~i~v~~~~~~~ 96 (275)
.|.|+++.++.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987654
No 287
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-17 Score=117.48 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC---ceeCCeEEE
Q psy1314 97 NPLKCKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK---QVICGKEVD 172 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~---~~~~g~~i~ 172 (275)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|++.++|++||+.++ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 37899999999999999999762 569999999
Q ss_pred EEEeeeCCCCC
Q psy1314 173 VKRVKFNPETM 183 (275)
Q Consensus 173 v~~~~~~~~~~ 183 (275)
|.++..+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766543
No 288
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.5e-17 Score=114.13 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=68.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCC-eEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-C-ceeCCeEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGS-ITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-K-QVICGKEVDVK 174 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~-~~~~g~~i~v~ 174 (275)
...++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.+ + ..|+|++|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555552 4789999999999999999976 5 78999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99877654
No 289
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=7.2e-17 Score=115.17 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeee
Q psy1314 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKI 87 (275)
Q Consensus 9 ~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i 87 (275)
......+.++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++. ++..+.++.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455678999999999999999999999999987666 35688999999999999999999995 5679999999
Q ss_pred ccccccccc
Q psy1314 88 DPKRVTKRV 96 (275)
Q Consensus 88 ~v~~~~~~~ 96 (275)
.|+++.++.
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999987654
No 290
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=4.5e-16 Score=113.92 Aligned_cols=76 Identities=18% Similarity=0.483 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 13 RNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
....++|||+|||++ +|+++|+++|++||+|++|.| ++|||||+|.+.++|++||+ +++..+.++.|.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999999 46899999999999999995 57889999999999
Q ss_pred cccccc
Q psy1314 91 RVTKRV 96 (275)
Q Consensus 91 ~~~~~~ 96 (275)
++....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987543
No 291
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.7e-16 Score=110.65 Aligned_cols=79 Identities=24% Similarity=0.522 Sum_probs=64.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEe
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRV 176 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~ 176 (275)
.....+|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+++. .....+.+++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 345689999999999999999999999999999999875 6899999999999998543 3345678999999999
Q ss_pred eeCCC
Q psy1314 177 KFNPE 181 (275)
Q Consensus 177 ~~~~~ 181 (275)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87754
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=112.11 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=64.6
Q ss_pred ceeeecCCCCCC------CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCe-EEE
Q psy1314 101 CKIFVGGLTTEI------SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGK-EVD 172 (275)
Q Consensus 101 ~~l~V~~l~~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~-~i~ 172 (275)
++|||+|||..+ ++++|+++|++||+|..|.++ +.++.++|||||+|.+.++|++|++.++ ..|.|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999987 4678899999999999999999999874 889998 776
Q ss_pred E
Q psy1314 173 V 173 (275)
Q Consensus 173 v 173 (275)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.6e-16 Score=110.55 Aligned_cols=79 Identities=20% Similarity=0.433 Sum_probs=68.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+++++++|+++|++||.|..| +.++.++. ||||+|.+.++|++||+ + +..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345789999999999999999999999999987 55555554 99999999999999999 6 59999999999988
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
..+...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 766543
No 294
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=3.1e-16 Score=114.43 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||+|++|.|+ +|||||+|.+.++|++|++ +++..+.++.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678899999999999999999999999999999998 5799999999999999998 478899999999
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|+++..+.
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987654
No 295
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.6e-17 Score=113.19 Aligned_cols=79 Identities=29% Similarity=0.488 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeeccccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~ 92 (275)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 356799999999999999999999999999999999865 689999999999999876543 45678999999988
Q ss_pred ccccC
Q psy1314 93 TKRVN 97 (275)
Q Consensus 93 ~~~~~ 97 (275)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 296
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=8.2e-16 Score=123.81 Aligned_cols=112 Identities=15% Similarity=0.257 Sum_probs=87.1
Q ss_pred cHHHHHHHHHhC--Cc-eecCeeeccccccccc----------CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEec
Q psy1314 67 TQKAVDDLLAAG--DH-YIGNKKIDPKRVTKRV----------NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQP 133 (275)
Q Consensus 67 ~~e~a~~al~~~--~~-~~~g~~i~v~~~~~~~----------~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 133 (275)
+.+.+..|++.. .. .+......+....... ....++|||+|||+++++++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 556777777765 22 3433323333221111 1134789999999999999999999999999999999
Q ss_pred cCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeC
Q psy1314 134 FDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFN 179 (275)
Q Consensus 134 ~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~ 179 (275)
++. ++.++|||||+|++.++|++|++.++..+.|++|.|.++..-
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 876 488999999999999999999999888999999999876643
No 297
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-16 Score=112.74 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeec
Q psy1314 11 PGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKID 88 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~ 88 (275)
.+..+.++|||+|||+ ++|+++|+++|++||+|.+|.|. +|||||+|.+.++|++|++. ++..+.+++|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4567789999999998 99999999999999999999994 57999999999999999995 77899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.....
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999876543
No 298
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.2e-16 Score=120.46 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|++ +++..+.+++|.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 3456678899999999999999999999999999999999999999999999999999999999998 578899999999
Q ss_pred ccccc
Q psy1314 89 PKRVT 93 (275)
Q Consensus 89 v~~~~ 93 (275)
|.++.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99875
No 299
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=3.3e-16 Score=141.09 Aligned_cols=85 Identities=19% Similarity=0.408 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
....+.++|||+|||+++|+++|.++|++||+|+.|.|+.++.+++++|||||+|.+.++|.+||+. ++..|.++.|.|
T Consensus 97 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 97 AQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999975 678999999999
Q ss_pred cccccc
Q psy1314 90 KRVTKR 95 (275)
Q Consensus 90 ~~~~~~ 95 (275)
.++...
T Consensus 177 ~~a~~~ 182 (437)
T 3pgw_S 177 DVERGR 182 (437)
T ss_pred EEeCCC
Confidence 998754
No 300
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=118.34 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|++|++.+ +..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456889999999999999876 6999999999988754 4678999999999999999999988 488999999
Q ss_pred EEEEeeeCCC
Q psy1314 172 DVKRVKFNPE 181 (275)
Q Consensus 172 ~v~~~~~~~~ 181 (275)
.|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=6.2e-16 Score=110.57 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=68.4
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 10 GPGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
.....+.++|||+|||. ++++++|+++|++||+|.+|.|. +|||||+|.+.++|++|++ +++..+.++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45567789999999998 99999999999999999999983 6899999999999999999 56789999999
Q ss_pred cccccccc
Q psy1314 88 DPKRVTKR 95 (275)
Q Consensus 88 ~v~~~~~~ 95 (275)
.|+++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99988653
No 302
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=111.42 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI-SIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~-~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
+.....++|||+|||+++|+++|+++|++||+|.+| .|+.++.++ .|||+|.+.++|++||+ +++..+.+++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 444567899999999999999999999999999999 588876643 39999999999999998 578899999999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++.++
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9998765
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1e-16 Score=114.46 Aligned_cols=78 Identities=26% Similarity=0.493 Sum_probs=68.9
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 97 NPLKCKIFVGGLTT-EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 97 ~~~~~~l~V~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
....++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.+ +..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34578999999998 99999999999999999999984 789999999999999999986 588999999999
Q ss_pred EeeeCCCC
Q psy1314 175 RVKFNPET 182 (275)
Q Consensus 175 ~~~~~~~~ 182 (275)
++..++..
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=111.72 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCC-ceecCeeec
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGD-HYIGNKKID 88 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~-~~~~g~~i~ 88 (275)
...+.++|||+|||.++|+++|+++|++||+ |..+.++ ++|||||+|.+.++|++|++ +++ ..+.++.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567889999999999999999999999999 6666663 36899999999999999998 467 899999999
Q ss_pred ccccccccC
Q psy1314 89 PKRVTKRVN 97 (275)
Q Consensus 89 v~~~~~~~~ 97 (275)
|+++.++..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999876543
No 305
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=115.50 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=67.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCC---CCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSK---NMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVK 174 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~ 174 (275)
...++|||+|||+++++++|+++|++||+|. +.++.+..+ ++++|||||+|.+.++|++||+.+ ..++|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3468899999999999999999999999999 888888777 689999999999999999999987 34777777665
Q ss_pred Ee
Q psy1314 175 RV 176 (275)
Q Consensus 175 ~~ 176 (275)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=116.34 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+. +++||||+|.+.++|++||+ +++..+.+++|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344578999999999999999999999999999999875 46899999999999999998 46789999999999
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
++..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 9864
No 307
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=107.78 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCee
Q psy1314 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKK 86 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~ 86 (275)
.......+.++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+. ++..+.++.
T Consensus 7 ~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 7 GERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp SCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 33455567889999996 99999999999999999999995 4578999999999999999975 678999999
Q ss_pred ecccccccccC
Q psy1314 87 IDPKRVTKRVN 97 (275)
Q Consensus 87 i~v~~~~~~~~ 97 (275)
|.|+++.++..
T Consensus 79 l~v~~a~~~~~ 89 (97)
T 1x5p_A 79 LKVNIARKQPM 89 (97)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 308
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=4.7e-16 Score=120.24 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeec
Q psy1314 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKID 88 (275)
Q Consensus 10 ~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~ 88 (275)
.......++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|++||+ +++..+.+++|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 444567889999999999999999999999999999999886 57999999999999999998 578899999999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9988654
No 309
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.6e-16 Score=115.04 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=68.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEcc----HHH----HHHHHH--h-CCce
Q psy1314 17 RKLFVGGL----HRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT----QKA----VDDLLA--A-GDHY 81 (275)
Q Consensus 17 ~~l~v~~L----p~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~----~e~----a~~al~--~-~~~~ 81 (275)
..|||+|| |+++++++|+++|+.||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 778877 3 6789
Q ss_pred ecCeeecccccc
Q psy1314 82 IGNKKIDPKRVT 93 (275)
Q Consensus 82 ~~g~~i~v~~~~ 93 (275)
|.|+.|.|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999988654
No 310
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=1.6e-16 Score=124.54 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~ 93 (275)
...++|||+|||.++|+++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++|+++++..+.+++|.|.++.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 34678999999999999999999999999999999999889999999999999999999999977789999999999987
Q ss_pred cc
Q psy1314 94 KR 95 (275)
Q Consensus 94 ~~ 95 (275)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 311
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=5.7e-16 Score=126.76 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=75.2
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~ 177 (275)
+.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999874 88999999998876
Q ss_pred eC
Q psy1314 178 FN 179 (275)
Q Consensus 178 ~~ 179 (275)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 312
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=108.32 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.+ +..|.+++|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999984 35889999999999999999887 4889999999999
Q ss_pred eeeCCCCC
Q psy1314 176 VKFNPETM 183 (275)
Q Consensus 176 ~~~~~~~~ 183 (275)
+.+++...
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98776543
No 313
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=113.55 Aligned_cols=80 Identities=16% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34468999999999999999999999999986 666654 46899999999999999999887 5889999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+.+++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=3.5e-16 Score=124.25 Aligned_cols=83 Identities=17% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||+.+++++|+++|++||+|..|.|+.+. ++.++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 8899999999999999999999987 58899999999998
Q ss_pred eeCCC
Q psy1314 177 KFNPE 181 (275)
Q Consensus 177 ~~~~~ 181 (275)
.....
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 76543
No 315
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=3.7e-16 Score=114.02 Aligned_cols=77 Identities=17% Similarity=0.456 Sum_probs=69.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.+ +..|.|++|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999987 689999999999999999986 5899999999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
+..++.
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=113.49 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=70.5
Q ss_pred CCcceeee--cCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee-----CCe
Q psy1314 98 PLKCKIFV--GGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI-----CGK 169 (275)
Q Consensus 98 ~~~~~l~V--~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~-----~g~ 169 (275)
.+..+||| +||++++++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|+ ..| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 779999999999999999999999988643 7899999999999999999885 777 688
Q ss_pred EEEEEEeeeCCCCCC
Q psy1314 170 EVDVKRVKFNPETMG 184 (275)
Q Consensus 170 ~i~v~~~~~~~~~~~ 184 (275)
+|.|.++...|...+
T Consensus 97 ~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 97 TLYLNFVEKVQWSGP 111 (114)
T ss_dssp ECEEEEESCCCCSSC
T ss_pred EEEEEecccCcccCC
Confidence 999999987766543
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=5e-16 Score=108.98 Aligned_cols=75 Identities=13% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~ 91 (275)
+...++|||+|||+++++++|+++|++| +|.+|.|. +++|||||+|.+.++|++|++ +++..+.+++|.|++
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3467899999999999999999999999 99999884 568999999999999999998 568899999999998
Q ss_pred ccc
Q psy1314 92 VTK 94 (275)
Q Consensus 92 ~~~ 94 (275)
+..
T Consensus 75 a~~ 77 (88)
T 1wg1_A 75 QPT 77 (88)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 318
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=6.3e-16 Score=108.08 Aligned_cols=73 Identities=23% Similarity=0.474 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
+.+.++|||+|||+++|+++|+++|++| | +|.++.+..+ +|||||+|.+.++|++|+.+++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4568899999999999999999999999 8 8999999765 689999999999999999667889
Q ss_pred ecCeeecccc
Q psy1314 82 IGNKKIDPKR 91 (275)
Q Consensus 82 ~~g~~i~v~~ 91 (275)
+.++.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999998864
No 319
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.4e-15 Score=119.80 Aligned_cols=81 Identities=25% Similarity=0.546 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
.....++|||+|||.++|+++|+++|++||+|.+|.++.++.+++++|+|||+|.+.++|++|++. ++..+.+++|.|+
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345578999999999999999999999999999999999988999999999999999999999984 7889999999998
Q ss_pred cc
Q psy1314 91 RV 92 (275)
Q Consensus 91 ~~ 92 (275)
++
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 320
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1e-15 Score=123.25 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecccccccc
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v~~~~~~ 95 (275)
.++|||+|||+++|+++|+++|++||+|.+|.|+++. +++++|||||+|.+.++|++||+.++..+.|++|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 5889999999999999999999999999999999985 589999999999999999999998888999999999887543
No 321
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.3e-16 Score=113.59 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=68.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||.++++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.+ +..|.|++|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999873 4789999999999999999886 58999999999988
Q ss_pred eeC
Q psy1314 177 KFN 179 (275)
Q Consensus 177 ~~~ 179 (275)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 322
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.2e-16 Score=111.99 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=72.9
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
....++|||+|||.++++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|++|++.+ +..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999999874 4567899999999999999999986 589999999
Q ss_pred EEEEeeeCCC
Q psy1314 172 DVKRVKFNPE 181 (275)
Q Consensus 172 ~v~~~~~~~~ 181 (275)
.|.++.+++.
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 323
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=113.48 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=69.2
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||+.+++++|+++|++||.|..|.|+. +++||||+|.+.++|++||+.+ +..|.+++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999874 4789999999999999999987 488999999999998
Q ss_pred eCC
Q psy1314 178 FNP 180 (275)
Q Consensus 178 ~~~ 180 (275)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 653
No 324
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=2.2e-15 Score=121.30 Aligned_cols=84 Identities=24% Similarity=0.547 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~~ 91 (275)
..+.++|||+|||.++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|++. ++..+.++.|.|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36779999999999999999999999999999999999988999999999999999999999984 78899999999999
Q ss_pred ccccc
Q psy1314 92 VTKRV 96 (275)
Q Consensus 92 ~~~~~ 96 (275)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.5e-15 Score=108.63 Aligned_cols=75 Identities=25% Similarity=0.516 Sum_probs=68.1
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 97 NPLKCKIFVGGLTT-EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 97 ~~~~~~l~V~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
....++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.+ +..+.|++|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 99999999999999999999983 789999999999999999977 588999999999
Q ss_pred EeeeC
Q psy1314 175 RVKFN 179 (275)
Q Consensus 175 ~~~~~ 179 (275)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 326
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=4.8e-16 Score=114.72 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~ 90 (275)
....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|.+.++|++||+ +++..|.++.|.+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 356789999999999999999999999999999999875 799999999999999999 56788999884443
No 327
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.6e-15 Score=123.86 Aligned_cols=84 Identities=17% Similarity=0.487 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeeeccccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i~v~~~ 92 (275)
...++|||+|||.++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|.+|++ +++..|.++.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999 5788999999999998
Q ss_pred ccccC
Q psy1314 93 TKRVN 97 (275)
Q Consensus 93 ~~~~~ 97 (275)
..+..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76543
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.5e-16 Score=113.69 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=67.9
Q ss_pred ceeeecCC----CCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECC----HHH----HHHHHh--cC-Cce
Q psy1314 101 CKIFVGGL----TTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD----QNV----AEQVLA--NP-KQV 165 (275)
Q Consensus 101 ~~l~V~~l----~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~----~e~----a~~Ai~--~~-~~~ 165 (275)
.+|+|+|| |+.+++++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|++ .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 322 888988 65 589
Q ss_pred eCCeEEEEEEe
Q psy1314 166 ICGKEVDVKRV 176 (275)
Q Consensus 166 ~~g~~i~v~~~ 176 (275)
|.|++|.|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999754
No 329
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.7e-15 Score=118.39 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=76.2
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEeee
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKF 178 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~~ 178 (275)
+++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.+ +..+.+++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999999999999999999999989999999999999999999999976 5899999999999876
Q ss_pred CCC
Q psy1314 179 NPE 181 (275)
Q Consensus 179 ~~~ 181 (275)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=121.27 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--E---eeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESIS--I---KNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~--i---~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
...+.++|||+|||+++|+++|+++|++||.|..+. + +....+++++|||||+|.+.++|.+||+ +++..+.++
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356778999999999999999999999999987641 0 1112468899999999999999999999 578899999
Q ss_pred eecccccccc
Q psy1314 86 KIDPKRVTKR 95 (275)
Q Consensus 86 ~i~v~~~~~~ 95 (275)
.|.|+++...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 331
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.7e-16 Score=109.47 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEE-EeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEF-QQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
...++|||+|||+++++++|+++|++||.|..| .|+.++.++ .|||+|.+.++|++||+.+ +..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346889999999999999999999999999999 588876654 3999999999999999977 5889999999999
Q ss_pred eeeCC
Q psy1314 176 VKFNP 180 (275)
Q Consensus 176 ~~~~~ 180 (275)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98874
No 332
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.5e-15 Score=118.98 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=76.7
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
.+++|||+|||.++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|++|++.+ +..+.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999999999889999999999999999999999876 589999999999987
Q ss_pred eCCC
Q psy1314 178 FNPE 181 (275)
Q Consensus 178 ~~~~ 181 (275)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 333
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=8.8e-16 Score=113.22 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|||..+++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 356799999999999999999999999999999998763 44899999999999999999976 58899999999999
Q ss_pred eeCC
Q psy1314 177 KFNP 180 (275)
Q Consensus 177 ~~~~ 180 (275)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8654
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=2e-15 Score=105.95 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=67.9
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~~ 177 (275)
..++|||+|||+++++++|+++|++| .|..+.|. +++|||||+|.+.++|++|++.+ +..+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 46899999999999999999987 588999999999986
Q ss_pred eCC
Q psy1314 178 FNP 180 (275)
Q Consensus 178 ~~~ 180 (275)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=110.32 Aligned_cols=78 Identities=13% Similarity=0.251 Sum_probs=63.9
Q ss_pred CCCCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCcee----
Q psy1314 10 GPGRNDERKLFV--GGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYI---- 82 (275)
Q Consensus 10 ~~~~~~~~~l~v--~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~---- 82 (275)
....++.++||| +||++++|+++|+++|++||+|++|.|+.+ +|||||+|.+.++|++|++. +++.+
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 344566789999 779999999999999999999999988643 68999999999999999985 45566
Q ss_pred -cCeeecccccc
Q psy1314 83 -GNKKIDPKRVT 93 (275)
Q Consensus 83 -~g~~i~v~~~~ 93 (275)
.+++|.+..+.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 46666665543
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=3.6e-15 Score=115.57 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=69.4
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC--eEEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICG--KEVDVKR 175 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g--~~i~v~~ 175 (275)
...+|||+||++.+|+++|+++|++||+|++|.|..+. +++||||+|.+.++|++|++.|+ ..|.+ ++|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34679999999999999999999999999999987542 47899999999999999999984 78865 9999999
Q ss_pred eeeCCC
Q psy1314 176 VKFNPE 181 (275)
Q Consensus 176 ~~~~~~ 181 (275)
++++..
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 987643
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=7e-15 Score=113.95 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecC--eeec
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN--KKID 88 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g--~~i~ 88 (275)
.+....+|||+||++++|+++|+++|++||+|++|.|..+. ++|||||+|.+.++|++|++. ++..|.+ +.|.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34455679999999999999999999999999999997542 578999999999999999986 5678855 8999
Q ss_pred ccccccc
Q psy1314 89 PKRVTKR 95 (275)
Q Consensus 89 v~~~~~~ 95 (275)
|+++..+
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9988765
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=5.1e-16 Score=119.07 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=71.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEE--eccC---CCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQ--QPFD---KSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKE 170 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~--i~~~---~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~ 170 (275)
....++|||+|||+.+++++|+++|++||.|..+. ++.+ ..++.++|||||+|.+.++|.+||+.+ +..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568999999999999999999999999987641 1111 235778999999999999999999987 58999999
Q ss_pred EEEEEeeeCCCC
Q psy1314 171 VDVKRVKFNPET 182 (275)
Q Consensus 171 i~v~~~~~~~~~ 182 (275)
|.|.++.....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=9.5e-15 Score=102.00 Aligned_cols=71 Identities=23% Similarity=0.473 Sum_probs=64.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccC----C-------CeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-Cce
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQY----G-------SITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQV 165 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~ 165 (275)
...++|||+|||+++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .+ +..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999998755 789999999999999999 65 589
Q ss_pred eCCeEEEEEE
Q psy1314 166 ICGKEVDVKR 175 (275)
Q Consensus 166 ~~g~~i~v~~ 175 (275)
+.|++|.|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 340
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.7e-14 Score=104.46 Aligned_cols=82 Identities=13% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeeCCCC-CCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 13 RNDERKLFVGGLHR-----NTGEKEINDYFSQYGEVESISIKNDPHT-GQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~-----~~t~~~l~~~f~~~G~v~~~~i~~~~~t-g~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
+.++++|+|.||.. +.++++|+++|++||+|++|.|++++.+ ++++|++||+|.+.++|.+|++ +++..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45788999999962 2478999999999999999999998754 6899999999999999999997 578899999
Q ss_pred eeccccccc
Q psy1314 86 KIDPKRVTK 94 (275)
Q Consensus 86 ~i~v~~~~~ 94 (275)
.|.+.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999988754
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1e-14 Score=108.55 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
....+.++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+. ++..+.++.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567889999996 79999999999999999999996 4578999999999999999964 788999999999
Q ss_pred ccccccc
Q psy1314 90 KRVTKRV 96 (275)
Q Consensus 90 ~~~~~~~ 96 (275)
.++.++.
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987653
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.3e-14 Score=108.30 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=68.1
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeE-EEEEECCHHHHHHHHhcCC-ceeCC--eEEEEE
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF-CFISFDDQNVAEQVLANPK-QVICG--KEVDVK 174 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~f~~~e~a~~Ai~~~~-~~~~g--~~i~v~ 174 (275)
.-.+|||+||++.+|+++|+++|++||+|.+|.|..+ ++|| |||+|.+.++|++|++.|+ ..|.+ +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4467899999999999999999999999999988754 2677 9999999999999999985 88888 889999
Q ss_pred EeeeCC
Q psy1314 175 RVKFNP 180 (275)
Q Consensus 175 ~~~~~~ 180 (275)
+++.+.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 988764
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=100.09 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCe
Q psy1314 13 RNDERK-LFVGGLHRNTGEKE----INDYFSQY-GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNK 85 (275)
Q Consensus 13 ~~~~~~-l~v~~Lp~~~t~~~----l~~~f~~~-G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~ 85 (275)
..++.+ |||+|||.++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++ +++..+.++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345566 99999999999988 55899999 599888 23 999999999999999997 578899999
Q ss_pred eecccccccccC
Q psy1314 86 KIDPKRVTKRVN 97 (275)
Q Consensus 86 ~i~v~~~~~~~~ 97 (275)
+|.|+.+..+.+
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999976543
No 344
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.7e-14 Score=106.67 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE-EEEEEccHHHHHHHHHh-CCceecC--ee
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGF-AFVTFTTQKAVDDLLAA-GDHYIGN--KK 86 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~-afV~f~~~e~a~~al~~-~~~~~~g--~~ 86 (275)
..+..-.+|||+||++.+|+++|+++|++||+|.+|.|+.+. +|+ |||+|.+.++|++|++. ++..|.+ +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 334555678899999999999999999999999999987642 578 99999999999999985 5778877 88
Q ss_pred ecccccccc
Q psy1314 87 IDPKRVTKR 95 (275)
Q Consensus 87 i~v~~~~~~ 95 (275)
|.|+++...
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999988654
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=5.8e-14 Score=104.32 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccE-EEEEEccHHHHHHHHHh-CCceecC--eeeccccc
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGF-AFVTFTTQKAVDDLLAA-GDHYIGN--KKIDPKRV 92 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~-afV~f~~~e~a~~al~~-~~~~~~g--~~i~v~~~ 92 (275)
..|||+|||+.+|+++|+++|++||+|++|.|+.. .|| |||+|.+.++|++|++. ++..|.+ +.|.|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999999752 286 99999999999999985 6778876 58889888
Q ss_pred ccc
Q psy1314 93 TKR 95 (275)
Q Consensus 93 ~~~ 95 (275)
.++
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=106.75 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=65.6
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeE-EEEEECCHHHHHHHHhcCC-ceeCC--eEEEEEE
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF-CFISFDDQNVAEQVLANPK-QVICG--KEVDVKR 175 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~f~~~e~a~~Ai~~~~-~~~~g--~~i~v~~ 175 (275)
...|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|++|++.|+ ..|.+ ++|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 356789999999999999999999999999998642 276 9999999999999999884 78877 6899999
Q ss_pred eeeCC
Q psy1314 176 VKFNP 180 (275)
Q Consensus 176 ~~~~~ 180 (275)
++++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 88764
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=101.40 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=63.3
Q ss_pred eeeecCCCCCCCHHH----HHHhcccC-CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEE
Q psy1314 102 KIFVGGLTTEISEQD----VRDYFSQY-GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKR 175 (275)
Q Consensus 102 ~l~V~~l~~~~~~~~----l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~ 175 (275)
.|||.|||+.+++++ |+++|++| |.|.+|. + |+|||+|.+.++|++|++.| +..|.|++|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999988 55899999 5998882 2 89999999999999999987 5899999999999
Q ss_pred eeeCCCC
Q psy1314 176 VKFNPET 182 (275)
Q Consensus 176 ~~~~~~~ 182 (275)
++.+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9988764
No 348
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=2.4e-14 Score=112.78 Aligned_cols=80 Identities=33% Similarity=0.502 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceec---Ceee
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIG---NKKI 87 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~---g~~i 87 (275)
...+.++|||+|||.++|+++|+++|++||.|++|.++.++ +++++|||||+|.+.++|.+|++. ++..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999985 689999999999999999999975 455554 3888
Q ss_pred ccccc
Q psy1314 88 DPKRV 92 (275)
Q Consensus 88 ~v~~~ 92 (275)
.|.++
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88765
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.5e-14 Score=116.29 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=69.8
Q ss_pred CcceeeecCCC-CCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 99 LKCKIFVGGLT-TEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 99 ~~~~l~V~~l~-~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
..++|||+||| +.+++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+.| +..|.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 89999999999999999999999875 3789999999999999999987 59999999999998
Q ss_pred eeCC
Q psy1314 177 KFNP 180 (275)
Q Consensus 177 ~~~~ 180 (275)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=5.1e-14 Score=101.92 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCcceeeecCCCC-----CCCHHHHHHhcccCCCeEEEEeccCCCC-CCeeeEEEEEECCHHHHHHHHhcC-CceeCCeE
Q psy1314 98 PLKCKIFVGGLTT-----EISEQDVRDYFSQYGSITEFQQPFDKSK-NMKKGFCFISFDDQNVAEQVLANP-KQVICGKE 170 (275)
Q Consensus 98 ~~~~~l~V~~l~~-----~~~~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~ 170 (275)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++.+ +.++|++||+|.+.++|.+|++.| +..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999963 2378999999999999999999988654 578999999999999999999988 48999999
Q ss_pred EEEEEeee
Q psy1314 171 VDVKRVKF 178 (275)
Q Consensus 171 i~v~~~~~ 178 (275)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 351
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.2e-14 Score=112.33 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeecc
Q psy1314 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDP 89 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v 89 (275)
....+.++|||+|||.++|+++|+++|++||+|..+ ..++.++|||||+|.+.++|.+|++. ++..+.+++|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999987665 46789999999999999999999995 778999999999
Q ss_pred cccccc
Q psy1314 90 KRVTKR 95 (275)
Q Consensus 90 ~~~~~~ 95 (275)
+++.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998654
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2e-14 Score=118.54 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=76.9
Q ss_pred HHHHhCCceecCeeeccccccc-----ccCCCcceeeecCCCCCC---------CHHHHHHhcccCCCeEEEEeccCCCC
Q psy1314 73 DLLAAGDHYIGNKKIDPKRVTK-----RVNPLKCKIFVGGLTTEI---------SEQDVRDYFSQYGSITEFQQPFDKSK 138 (275)
Q Consensus 73 ~al~~~~~~~~g~~i~v~~~~~-----~~~~~~~~l~V~~l~~~~---------~~~~l~~~F~~~G~v~~v~i~~~~~~ 138 (275)
.+|......+.++......... ......++|||+||+..+ ++++|+++|++||+|..|.|+.+
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--- 178 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--- 178 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---
T ss_pred hcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---
Confidence 3444344445565544333221 123456899999999998 79999999999999999999853
Q ss_pred CCeeeEEEEEECCHHHHHHHHhcC-Ccee------------CCeEEEEEEeeeCCCC
Q psy1314 139 NMKKGFCFISFDDQNVAEQVLANP-KQVI------------CGKEVDVKRVKFNPET 182 (275)
Q Consensus 139 ~~~~G~afV~f~~~e~a~~Ai~~~-~~~~------------~g~~i~v~~~~~~~~~ 182 (275)
+|||||+|.+.++|++|++.| +..| .|+.|.|.++...+..
T Consensus 179 ---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 179 ---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ---CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 899999999999999999988 4777 8999999999987654
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=1.7e-14 Score=107.31 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=67.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVKRV 176 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~~~ 176 (275)
...++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.+ +..|.|++|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35689999996 69999999999999999999986 35889999999999999999886 58899999999999
Q ss_pred eeCCCC
Q psy1314 177 KFNPET 182 (275)
Q Consensus 177 ~~~~~~ 182 (275)
..++..
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 877543
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=3.7e-14 Score=116.97 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCc
Q psy1314 11 PGRNDERKLFVGGLHRNT---------GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDH 80 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~ 80 (275)
+...+.++|||+|||.++ ++++|+++|++||+|++|.|+.+ +|||||+|.+.++|++|++. ++.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345678999999999998 79999999999999999999864 78999999999999999975 566
Q ss_pred ee------------cCeeecccccccccC
Q psy1314 81 YI------------GNKKIDPKRVTKRVN 97 (275)
Q Consensus 81 ~~------------~g~~i~v~~~~~~~~ 97 (275)
.| .++.|.|+++....+
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 77 789999999876543
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=1.1e-13 Score=117.81 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=73.5
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
...+++|||+|||+++++++|+ ++|++||.|..|.|++ +++++|||||+|.+.++|++||+.+ +..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999999886 5678999999999999999999887 589999999
Q ss_pred EEEEeeeCCC
Q psy1314 172 DVKRVKFNPE 181 (275)
Q Consensus 172 ~v~~~~~~~~ 181 (275)
.|.++..+..
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999976653
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.7e-13 Score=96.99 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=60.1
Q ss_pred CCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEEEEEeeeCCCCCC
Q psy1314 110 TEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFNPETMG 184 (275)
Q Consensus 110 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~v~~~~~~~~~~~ 184 (275)
..+++++|+++|++||+|..|.|+ ++++|||||+|.+.++|++||+.+. .+.+++|.|.++..++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLKISWLEGQPQDAS 95 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCEEECSSCCCCCCS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEEEEEccCCCCCCC
Confidence 578999999999999999999988 2579999999999999999999853 36799999999988765443
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-13 Score=95.54 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCe
Q psy1314 13 RNDERKLFVGGLH-------RNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNK 85 (275)
Q Consensus 13 ~~~~~~l~v~~Lp-------~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~ 85 (275)
.+..++|.|.-.. .++|+++|+++|++||+|++|.|+. +++|||||+|.+.++|++||+. ...+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQN-EVGLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHT-CCBCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHh-cCCCCCC
Confidence 4457788887654 4589999999999999999999983 5789999999999999999997 3446789
Q ss_pred eeccccccccc
Q psy1314 86 KIDPKRVTKRV 96 (275)
Q Consensus 86 ~i~v~~~~~~~ 96 (275)
+|.|+++..+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999886553
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.6e-13 Score=98.71 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=68.2
Q ss_pred CCCcceeeecCCCCCCC-----------HHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-c
Q psy1314 97 NPLKCKIFVGGLTTEIS-----------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-Q 164 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~-----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~ 164 (275)
...+++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|++.++ .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568899999944332 5899999999999999966 443 269999999999999999999885 8
Q ss_pred eeCCeEEEEEEeeeCCCC
Q psy1314 165 VICGKEVDVKRVKFNPET 182 (275)
Q Consensus 165 ~~~g~~i~v~~~~~~~~~ 182 (275)
.|.|++|.|.++.++...
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999876553
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.1e-13 Score=97.89 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=68.0
Q ss_pred CCCCCCCeEEEcCCCCCC-----------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-C
Q psy1314 11 PGRNDERKLFVGGLHRNT-----------GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-G 78 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~~-----------t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~ 78 (275)
..+.++++|+|.||.... ++++|+++|++||+|++|.| .++ .++|||||+|.+.++|++|++. +
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 356778999999994332 26899999999999999966 443 3799999999999999999975 5
Q ss_pred CceecCeeeccccccccc
Q psy1314 79 DHYIGNKKIDPKRVTKRV 96 (275)
Q Consensus 79 ~~~~~g~~i~v~~~~~~~ 96 (275)
+..+.+++|.|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 779999999999986543
No 360
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=1.6e-13 Score=113.31 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEEEEE
Q psy1314 97 NPLKCKIFVGGLTT-EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVDVK 174 (275)
Q Consensus 97 ~~~~~~l~V~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i~v~ 174 (275)
....++|||+|||. ++++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++|++.+ +..|.|++|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44578999999999 99999999999999999999999874 789999999999999999876 588999999999
Q ss_pred EeeeCC
Q psy1314 175 RVKFNP 180 (275)
Q Consensus 175 ~~~~~~ 180 (275)
++....
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 987653
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=3e-13 Score=113.94 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC--Cceec---Ceeec
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG--DHYIG---NKKID 88 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~--~~~~~---g~~i~ 88 (275)
.+..+|||+|||.++|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+||+.+ ...+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34679999999999999999999999999999999999 58999999999999999999999975 33444 88888
Q ss_pred cccccccc
Q psy1314 89 PKRVTKRV 96 (275)
Q Consensus 89 v~~~~~~~ 96 (275)
|.++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 88876553
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=4.3e-13 Score=97.00 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=69.0
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeeCCCC--CCcccEEEEEEccHHHHHHHHH-hCCc
Q psy1314 14 NDERKLFVGGL--HRNTG--------EKEINDYFSQYGEVESISIKNDPHT--GQSRGFAFVTFTTQKAVDDLLA-AGDH 80 (275)
Q Consensus 14 ~~~~~l~v~~L--p~~~t--------~~~l~~~f~~~G~v~~~~i~~~~~t--g~~~G~afV~f~~~e~a~~al~-~~~~ 80 (275)
.+++.|.|.|+ |.++. +++|++.|++||+|++|.|++++.+ ++++|++||+|.+.++|.+|++ +++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 4799999999999999999988754 4689999999999999999997 4688
Q ss_pred eecCeeeccccccc
Q psy1314 81 YIGNKKIDPKRVTK 94 (275)
Q Consensus 81 ~~~g~~i~v~~~~~ 94 (275)
.+.++.|.+.....
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999987754
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=1e-12 Score=105.88 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceec-Ceeeccc
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIG-NKKIDPK 90 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~-g~~i~v~ 90 (275)
.+.++|||+|||.++|+++|+++|++|| +|.+|.|+.+. +|+|||+|.+.++|.+|++ +++..+. +++|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999997642 6899999999999999999 5677888 9999999
Q ss_pred cccc
Q psy1314 91 RVTK 94 (275)
Q Consensus 91 ~~~~ 94 (275)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 8764
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=6.9e-13 Score=95.91 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=67.5
Q ss_pred CcceeeecCC--CCCCC--------HHHHHHhcccCCCeEEEEeccCCCC--CCeeeEEEEEECCHHHHHHHHhcCC-ce
Q psy1314 99 LKCKIFVGGL--TTEIS--------EQDVRDYFSQYGSITEFQQPFDKSK--NMKKGFCFISFDDQNVAEQVLANPK-QV 165 (275)
Q Consensus 99 ~~~~l~V~~l--~~~~~--------~~~l~~~F~~~G~v~~v~i~~~~~~--~~~~G~afV~f~~~e~a~~Ai~~~~-~~ 165 (275)
+++.|.|.|+ |..+. +++|+++|++||.|.+|.|+++..+ ..++|++||+|.+.++|++|++.|+ ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4566778887 33332 3799999999999999999988765 3578999999999999999999985 89
Q ss_pred eCCeEEEEEEeeeC
Q psy1314 166 ICGKEVDVKRVKFN 179 (275)
Q Consensus 166 ~~g~~i~v~~~~~~ 179 (275)
+.|++|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987643
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.5e-13 Score=98.13 Aligned_cols=71 Identities=17% Similarity=0.421 Sum_probs=60.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCceecCeee
Q psy1314 21 VGGLHRNTGEKEINDYF------------SQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHYIGNKKI 87 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f------------~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~~~g~~i 87 (275)
+.+||+++++++|+++| ++||+|++|.|++++ +++++|||||+|.+.++|++|++ +++..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777777666 999999999999885 47899999999999999999998 57889999999
Q ss_pred ccccc
Q psy1314 88 DPKRV 92 (275)
Q Consensus 88 ~v~~~ 92 (275)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98765
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.1e-13 Score=98.54 Aligned_cols=71 Identities=15% Similarity=0.368 Sum_probs=60.4
Q ss_pred ecCCCCCCCHHHHHHhc------------ccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 105 VGGLTTEISEQDVRDYF------------SQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 105 V~~l~~~~~~~~l~~~F------------~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
+.+|++.+++++|+++| ++||.|.+|.|+.+.. ++++|||||+|.+.++|++|++.+ +..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777777666665 9999999999998764 688999999999999999999987 489999999
Q ss_pred EEEEe
Q psy1314 172 DVKRV 176 (275)
Q Consensus 172 ~v~~~ 176 (275)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.2e-12 Score=96.53 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=68.6
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHHhhcCCeeEEEEeeCCC----CCCcccEEEEEEccHHHHHHHHHh-CCceecC
Q psy1314 15 DERKLFVGGLH--RNT---GEKEINDYFSQYGEVESISIKNDPH----TGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN 84 (275)
Q Consensus 15 ~~~~l~v~~Lp--~~~---t~~~l~~~f~~~G~v~~~~i~~~~~----tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g 84 (275)
++++|+|.|+- .++ .+++|++.|++||+|++|.|++++. +++++|++||+|.+.++|.+|++. ++..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68899999993 222 4799999999999999999998864 457889999999999999999985 6889999
Q ss_pred eeeccccccc
Q psy1314 85 KKIDPKRVTK 94 (275)
Q Consensus 85 ~~i~v~~~~~ 94 (275)
+.|.+..+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999987753
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=2.2e-12 Score=95.13 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=67.7
Q ss_pred CcceeeecCCCC--CC---CHHHHHHhcccCCCeEEEEeccCCC----CCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC
Q psy1314 99 LKCKIFVGGLTT--EI---SEQDVRDYFSQYGSITEFQQPFDKS----KNMKKGFCFISFDDQNVAEQVLANPK-QVICG 168 (275)
Q Consensus 99 ~~~~l~V~~l~~--~~---~~~~l~~~F~~~G~v~~v~i~~~~~----~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g 168 (275)
++++|+|.|+-. ++ .+++|++.|++||+|.+|.|++++. +++++|++||+|.+.++|.+|++.|+ ..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456788888732 22 3689999999999999999998764 45778999999999999999999985 89999
Q ss_pred eEEEEEEeee
Q psy1314 169 KEVDVKRVKF 178 (275)
Q Consensus 169 ~~i~v~~~~~ 178 (275)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=8.6e-12 Score=108.20 Aligned_cols=69 Identities=10% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCCCCCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC-Ccee
Q psy1314 8 TAGPGRNDERKLFVGG--LHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG-DHYI 82 (275)
Q Consensus 8 ~~~~~~~~~~~l~v~~--Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~-~~~~ 82 (275)
.....+.++++|||+| |+..+|+++|+++|++||+|++|.|.. +||||||+|.+.++|++|++.+ +..+
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4455678889999999 588999999999999999999987754 4789999999999999999974 4444
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.9e-11 Score=106.01 Aligned_cols=74 Identities=12% Similarity=0.248 Sum_probs=60.8
Q ss_pred CCCcceeeecC--CCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-cee---CCe-
Q psy1314 97 NPLKCKIFVGG--LTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVI---CGK- 169 (275)
Q Consensus 97 ~~~~~~l~V~~--l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~---~g~- 169 (275)
..++.+|||+| |+..+|+++|+++|++||+|..|.+.. +||||||+|.+.++|++||+.|+ ..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44567899999 578999999999999999999988754 37999999999999999999985 555 244
Q ss_pred -EEEEEEe
Q psy1314 170 -EVDVKRV 176 (275)
Q Consensus 170 -~i~v~~~ 176 (275)
.+.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555555
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=1.2e-10 Score=85.09 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCC--CCC--------CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH-hCCce
Q psy1314 13 RNDERKLFVGGLH--RNT--------GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA-AGDHY 81 (275)
Q Consensus 13 ~~~~~~l~v~~Lp--~~~--------t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~-~~~~~ 81 (275)
+-++++|.|.|+= .+. .+++|++.|++||.|++|.|.++. ++|++||+|.+.++|++|++ +++..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999982 221 346889999999999999997653 58999999999999999997 47889
Q ss_pred ecCeeecccccc
Q psy1314 82 IGNKKIDPKRVT 93 (275)
Q Consensus 82 ~~g~~i~v~~~~ 93 (275)
+.|+.|.+.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999998874
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=7.2e-11 Score=86.67 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECC-HHHHHHHHhcC---CceeCCeEE
Q psy1314 97 NPLKCKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD-QNVAEQVLANP---KQVICGKEV 171 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~-~e~a~~Ai~~~---~~~~~g~~i 171 (275)
....+.|+|+||+.. +++++|+++|++||+|..|.+..++. .|||+|.+ .++|.+|++++ +..|++..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345688999999999 99999999999999999999998854 49999999 89999999987 478899888
Q ss_pred EEEEeee
Q psy1314 172 DVKRVKF 178 (275)
Q Consensus 172 ~v~~~~~ 178 (275)
++....-
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8876653
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=1e-10 Score=85.50 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=61.5
Q ss_pred cceeeecCCCCCC----------CHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCC
Q psy1314 100 KCKIFVGGLTTEI----------SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICG 168 (275)
Q Consensus 100 ~~~l~V~~l~~~~----------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g 168 (275)
++.|.|.|+=... .+++|+++|++||.|.+|.|.++. ++|++||+|.+.++|++|++.|+ ..+.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4456666663221 246899999999999999997653 48999999999999999999884 89999
Q ss_pred eEEEEEEeeeC
Q psy1314 169 KEVDVKRVKFN 179 (275)
Q Consensus 169 ~~i~v~~~~~~ 179 (275)
+.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999988643
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.8e-10 Score=82.83 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=61.1
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEcc-HHHHHHHHHhC---CceecCe
Q psy1314 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT-QKAVDDLLAAG---DHYIGNK 85 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~-~e~a~~al~~~---~~~~~g~ 85 (275)
..-.....|+|+||+.+ +++++|+++|++||+|..|.++.+.. .|||.|.+ +++|.+|+..+ +..|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34466788999999999 99999999999999999999998865 69999999 78898888864 3456665
Q ss_pred eeccc
Q psy1314 86 KIDPK 90 (275)
Q Consensus 86 ~i~v~ 90 (275)
.+.++
T Consensus 87 ~~~~e 91 (121)
T 1owx_A 87 EVTWE 91 (121)
T ss_dssp SEEEE
T ss_pred EEEEE
Confidence 44443
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=74.51 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=59.0
Q ss_pred CcceeeecCCCC----CCCH----HHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeE
Q psy1314 99 LKCKIFVGGLTT----EISE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKE 170 (275)
Q Consensus 99 ~~~~l~V~~l~~----~~~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~ 170 (275)
+..+|+|.-++. ++-+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+..+..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 445666665541 2323 6789999999999999999873 89999999999999994469999999
Q ss_pred EEEEEeeeC
Q psy1314 171 VDVKRVKFN 179 (275)
Q Consensus 171 i~v~~~~~~ 179 (275)
|+|..+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999988764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=74.97 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCe
Q psy1314 14 NDERKLFVGGLHR----NTGE----KEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNK 85 (275)
Q Consensus 14 ~~~~~l~v~~Lp~----~~t~----~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~ 85 (275)
.+..||+|.-+|. ++-+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+||++++..+.++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 4556777776662 3333 6799999999999999999873 8999999999999999999999999
Q ss_pred eeccccccc
Q psy1314 86 KIDPKRVTK 94 (275)
Q Consensus 86 ~i~v~~~~~ 94 (275)
.|+|+.+.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999998764
No 377
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.5e-08 Score=69.13 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCee
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQY-----GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKK 86 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~-----G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~ 86 (275)
...-..+|.|.|||.+++++.|.-+|++- |+|++++...+ -|+|+|.+.+.|++.|+...+.+.+.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~--------~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC--------GGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT--------EEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC--------cEEEEEcChHHHHHHhcCCcceecCeE
Confidence 34567899999999999999999999983 67998888652 699999999999999998899999998
Q ss_pred ecccccccccCCCcceeeecCCCCCCC
Q psy1314 87 IDPKRVTKRVNPLKCKIFVGGLTTEIS 113 (275)
Q Consensus 87 i~v~~~~~~~~~~~~~l~V~~l~~~~~ 113 (275)
|.|....+ ....+|++.+|++.++
T Consensus 76 LsV~P~~~---~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPP---RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCC---CCCCCCCCCSCCCCCC
T ss_pred EEEEcCCC---CCcceEeeecCCCCCC
Confidence 88876553 3457899999999875
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=6.1e-09 Score=72.09 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 11 PGRNDERKLFVGGLHRN-----TGE----KEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 11 ~~~~~~~~l~v~~Lp~~-----~t~----~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
..-.+..||+|.-++.+ +-+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+||++++..
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCee
Confidence 34456778999888743 222 5688999999999999999983 999999999999999988999
Q ss_pred ecCeeecccccc
Q psy1314 82 IGNKKIDPKRVT 93 (275)
Q Consensus 82 ~~g~~i~v~~~~ 93 (275)
+.++.|+|+...
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=8.7e-09 Score=71.34 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=59.1
Q ss_pred CCCcceeeecCCCCC-----CCH----HHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeC
Q psy1314 97 NPLKCKIFVGGLTTE-----ISE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVIC 167 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~-----~~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~ 167 (275)
-++..+|+|.-++.. +-+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+.....++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 345677888777632 222 5688999999999999999873 99999999999999994469999
Q ss_pred CeEEEEEEee
Q psy1314 168 GKEVDVKRVK 177 (275)
Q Consensus 168 g~~i~v~~~~ 177 (275)
|+.|+|....
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999997643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=6.6e-08 Score=79.03 Aligned_cols=79 Identities=13% Similarity=0.261 Sum_probs=63.3
Q ss_pred CCCeEEEcCCC-----CCCCHHHHHHHHhhcCCeeEEEEeeCC----CCCCcccEEEEEEccHHHHHHHHHh-CCceecC
Q psy1314 15 DERKLFVGGLH-----RNTGEKEINDYFSQYGEVESISIKNDP----HTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGN 84 (275)
Q Consensus 15 ~~~~l~v~~Lp-----~~~t~~~l~~~f~~~G~v~~~~i~~~~----~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g 84 (275)
....+.+.++- .+-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|++. ++..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34455555552 234678999999999999999998554 3458999999999999999999985 6789999
Q ss_pred eeecccccc
Q psy1314 85 KKIDPKRVT 93 (275)
Q Consensus 85 ~~i~v~~~~ 93 (275)
|.|.+....
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999888764
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=3.7e-08 Score=80.58 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCHHHHHHhcccCCCeEEEEeccC----CCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEEEEeee
Q psy1314 112 ISEQDVRDYFSQYGSITEFQQPFD----KSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDVKRVKF 178 (275)
Q Consensus 112 ~~~~~l~~~F~~~G~v~~v~i~~~----~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v~~~~~ 178 (275)
-.+++|++.|++||.|..+.|+++ ..+++++|++||+|.+.++|++|++.|+ ..+.|+.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356899999999999999999844 4455899999999999999999999984 899999999988753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.9e-06 Score=59.96 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=64.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHH-HHhCCceecCe
Q psy1314 12 GRNDERKLFVGGLHRNTGEKEINDYFSQY-----GEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL-LAAGDHYIGNK 85 (275)
Q Consensus 12 ~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~-----G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a-l~~~~~~~~g~ 85 (275)
..+..++|-|-+||..++++.|+.+++++ +.++.|.++.|- +=|+|+|++..+|.+| |..++..|.++
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34568899999999999999999999999 999999999984 3699999999877765 57888999999
Q ss_pred eecccc
Q psy1314 86 KIDPKR 91 (275)
Q Consensus 86 ~i~v~~ 91 (275)
.|.+-.
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 887653
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.4e-06 Score=61.52 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccC-----CCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC-CceeCCeEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQY-----GSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEV 171 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~-~~~~~g~~i 171 (275)
...++|-+-+||..+++..|+.+++++ +.++.+.+..|. +-|+|+|.|...|-+|...+ +.+|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 345788899999999999999999999 999999988773 24999999999999988766 689999999
Q ss_pred EEEE
Q psy1314 172 DVKR 175 (275)
Q Consensus 172 ~v~~ 175 (275)
.|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.1e-05 Score=56.56 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=62.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHhccc-----CCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCCeEEE
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQ-----YGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVD 172 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~-----~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g~~i~ 172 (275)
....+|.|.|||..++++.|+-+|++ -|+|..++... .-|+|+|.+.+.|++.|++..+.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 34578999999999999999999997 26888888653 348999999999999999988999999999
Q ss_pred EEEeeeC
Q psy1314 173 VKRVKFN 179 (275)
Q Consensus 173 v~~~~~~ 179 (275)
|....++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9765544
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.07 E-value=1.7e-05 Score=54.80 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=46.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
...+.++| .+|+++...||.++|+.||.| .|..+.|- .|||.|.+++.|..|+++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 33455666 999999999999999999955 68888873 799999999999999985
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=0.00012 Score=52.99 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecC-e
Q psy1314 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGN-K 85 (275)
Q Consensus 7 ~~~~~~~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g-~ 85 (275)
.....+..+.+.|.|-++|++. ...|.++|++||+|.+...... .....|.|.++.+|++||..++..+.+ -
T Consensus 15 ~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 15 SLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp ------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTE
T ss_pred ccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCE
Confidence 3344556667889999999985 6778888999999988877322 348999999999999999999988875 4
Q ss_pred eecccc
Q psy1314 86 KIDPKR 91 (275)
Q Consensus 86 ~i~v~~ 91 (275)
.|-|.+
T Consensus 88 mIGV~p 93 (119)
T 1wwh_A 88 MIGVKP 93 (119)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 444444
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=7e-05 Score=51.96 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
+.++| .+|+++...||.++|+.||.| .|..+.|- .|||.|.+++.|..||++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34555 999999999999999999944 78888873 899999999999999985
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00039 Score=48.81 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeee
Q psy1314 14 NDERKLFVGGLHRNT-G----EKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKI 87 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~-t----~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i 87 (275)
+-.++|+|+||+.++ + ++.++++|..|+++.....++.- .-..|.|.++++|.+|-.. ++..+.|+.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345789999999876 2 36789999999999888888752 2578999999999998654 5678999988
Q ss_pred cccccc
Q psy1314 88 DPKRVT 93 (275)
Q Consensus 88 ~v~~~~ 93 (275)
++-.++
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 877765
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.00075 Score=46.49 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=49.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCC--cccEEEEEEccHHHHHHHHHh
Q psy1314 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQ--SRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 17 ~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~--~~G~afV~f~~~e~a~~al~~ 77 (275)
.+|.|++||+.+||+++.+.+..+.++.....+.-+.+.. .-.-|||.|.+.+++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5799999999999999999999988777666665443322 234699999999999988875
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.00071 Score=47.52 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=59.8
Q ss_pred cceeeecCCCCCC-CH----HHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCC-ceeCCeEEEE
Q psy1314 100 KCKIFVGGLTTEI-SE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPK-QVICGKEVDV 173 (275)
Q Consensus 100 ~~~l~V~~l~~~~-~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~-~~~~g~~i~v 173 (275)
.++|+|.||+..+ .. +.++++|..|.++......+.= .-..|.|.++++|.+|-..++ ..+.|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998866 22 5678999999988776665431 127899999999999998884 8899999999
Q ss_pred EEeeeCC
Q psy1314 174 KRVKFNP 180 (275)
Q Consensus 174 ~~~~~~~ 180 (275)
.++++.+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9988543
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0019 Score=46.61 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=57.7
Q ss_pred CcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCceeCC-eEEEEEEee
Q psy1314 99 LKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICG-KEVDVKRVK 177 (275)
Q Consensus 99 ~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~~~~g-~~i~v~~~~ 177 (275)
..+-|.|-++|... ...|-+.|++||+|.+..... ...+-.|+|+++.+|++||.+.+..|.+ -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 35678888999885 567778899999999887621 2458999999999999999998888875 667776654
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.22 E-value=0.00045 Score=47.74 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=42.8
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
.+.++| .+|.++...||.++|++||.| .|..+-|. .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455666 999999999999999999853 34444332 5999999999999998853
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.00073 Score=46.85 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=42.2
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhc
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~ 161 (275)
+.++| ++|.++...||.++|++||. ..|..+-|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 45666 99999999999999999983 445555442 499999999999998885
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.61 E-value=0.003 Score=43.79 Aligned_cols=63 Identities=5% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCC--cccEEEEEEccHHHHHHHHHh
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQ--SRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~--~~G~afV~f~~~e~a~~al~~ 77 (275)
.+-+|.|+.||+.+||+++.+.+..+=++.....+.-+.+-. .-.-|||.|.+.|+.....+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 456899999999999999999888764443333322222111 123589999999999998886
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0012 Score=59.20 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=44.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhC
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~ 78 (275)
..++|+|. .|.++++.+|.++|++||+|.++.+-.+.. -||.|+|++.+++.++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhcc
Confidence 35789998 799999999999999999999999876542 49999999999999887653
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.49 E-value=0.0079 Score=41.35 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=48.8
Q ss_pred ceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCC--eeeEEEEEECCHHHHHHHHhcC
Q psy1314 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNM--KKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 101 ~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
++|.|++||+.+|++++.+.+.....+.....+..+.+.. .-.-|+|.|.+.+++....+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 4789999999999999999999888877766654433221 2244899999999998888875
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.19 E-value=0.0076 Score=44.09 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=54.7
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEE-EEeccCCC---------CC----CeeeEEEEEECCHHHHHHHHhcCCce
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITE-FQQPFDKS---------KN----MKKGFCFISFDDQNVAEQVLANPKQV 165 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~~~---------~~----~~~G~afV~f~~~e~a~~Ai~~~~~~ 165 (275)
...|.|=+.|+..+. .+-+.|++||.|.+ +.+..... +. ....+..|+|+++.+|.+||.+.+..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 345777788777655 56678999999866 22221000 00 12467899999999999999999999
Q ss_pred eCCeEEEEEEeee
Q psy1314 166 ICGKEVDVKRVKF 178 (275)
Q Consensus 166 ~~g~~i~v~~~~~ 178 (275)
|.|..|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9998877776543
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.11 E-value=0.0067 Score=44.38 Aligned_cols=78 Identities=13% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeeC--------CCCCC-----cccEEEEEEccHHHHHHHHHhCC
Q psy1314 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKND--------PHTGQ-----SRGFAFVTFTTQKAVDDLLAAGD 79 (275)
Q Consensus 14 ~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~-~~i~~~--------~~tg~-----~~G~afV~f~~~e~a~~al~~~~ 79 (275)
..+..|.|=+.|++.+ ..+.++|++||.|.+ ..+... +.+.+ ......|+|.++.+|.+||+.++
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 4456678888866654 567778999999765 222110 00011 24577999999999999999999
Q ss_pred ceecCeeeccccc
Q psy1314 80 HYIGNKKIDPKRV 92 (275)
Q Consensus 80 ~~~~g~~i~v~~~ 92 (275)
..|.+..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999875555544
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.56 E-value=0.0053 Score=55.02 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=44.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 97 ~~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
....+.|+|. .|..+++.+|.++|++||+|.++....+. .-|+.|||.+.+++.+++...
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 3445789997 79999999999999999999999876542 369999999999999887663
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.49 E-value=0.033 Score=38.57 Aligned_cols=64 Identities=6% Similarity=0.047 Sum_probs=45.9
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCC--eeeEEEEEECCHHHHHHHHhcCC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNM--KKGFCFISFDDQNVAEQVLANPK 163 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~f~~~e~a~~Ai~~~~ 163 (275)
+.+|.|+.||+.+|++++.+.+...-++.....+..+.+.. .-.-|+|.|.+.+++....+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 46799999999999999988888765554433333222211 12348999999999999888853
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.26 E-value=0.26 Score=44.82 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=44.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
..+.++|+ +|..+...+|.++|+.||.| +|..+.+. .|||.|.+.+.|..+++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 34566676 99999999999999999954 67666652 799999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.38 E-value=2.1 Score=38.79 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=42.0
Q ss_pred cceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 100 ~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
+..++|+ +|..+...+|.++|+.||.| .|..+.+ -.|||.|.+.+.|..++..+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 3456665 88899999999999999954 4554433 25999999999999888764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=83.75 E-value=3.7 Score=27.56 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=45.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcC
Q psy1314 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 98 ~~~~~l~V~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~ 162 (275)
..+|-|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-|+.++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 346778899999999988888777777765666654 235999999999999998874
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.67 E-value=16 Score=24.40 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=47.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
-...+-|-|-|||..+-+.++.-.....|---.|..+. |-|.|.|.+.++.+.|++.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 34567788999999999999999888888777787764 3699999999999999885
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.55 E-value=30 Score=21.87 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=37.0
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhhcCC-----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh-CCceecCeeeccc
Q psy1314 18 KLFVGGL-HRNTGEKEINDYFSQYGE-----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (275)
Q Consensus 18 ~l~v~~L-p~~~t~~~l~~~f~~~G~-----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~-~~~~~~g~~i~v~ 90 (275)
+|+|.-= -..++..+|..++..-+. |-.|.|..+ |.||+-.... ++.+++. ....+.++.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555422 234677888888876543 556777544 8999987655 4455544 4557788887776
Q ss_pred cc
Q psy1314 91 RV 92 (275)
Q Consensus 91 ~~ 92 (275)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=56.19 E-value=42 Score=22.41 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=22.8
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 43 VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 43 v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
|.++.+.. ...||.||++...++...+++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHC
Confidence 55555543 3789999999998888888875
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=47.64 E-value=13 Score=25.49 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=43.6
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 21 VGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
|-.++..+.-++|..... .||.-.++....+ -..|-..+.+|.++||+.+.....-+.+++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrI 82 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 82 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEE
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEE
Confidence 344677788888888775 5898888888743 366889999999999997544433333333
No 408
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=45.36 E-value=57 Score=22.40 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhhc-CC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQY-GE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~~-G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+. +. |.-..+.+.--.+++.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 567889999988764 33 222333443345678888876 7777776553
No 409
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.34 E-value=60 Score=22.24 Aligned_cols=50 Identities=10% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHH
Q psy1314 25 HRNTGEKEINDYFSQ-YGE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLL 75 (275)
Q Consensus 25 p~~~t~~~l~~~f~~-~G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al 75 (275)
..+.+..+|++.+.+ |+. |.-..+.+.--.+++.|||.| |.+.+.|.+.-
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 356788999998876 433 222233343334678888876 77777776654
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=44.50 E-value=60 Score=22.52 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+ |+. |.-..+.+.--.+++.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45788999998876 443 222233333334678888877 7787777654
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=43.80 E-value=14 Score=25.25 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeeCCCC----CCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGEVESISIKNDPHT----GQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~v~~~~i~~~~~t----g~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+ |+.-.++.++..-.| +++.|||.| |.+.+.|.+.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45688999988876 443333444433233 567788866 6666666554
No 412
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.26 E-value=45 Score=22.78 Aligned_cols=59 Identities=8% Similarity=0.167 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHhcc-cCCCeEEEEeccCCCCCCeeeEEEEEECCHHHHHHHHhcCCc--eeCCeEEEE
Q psy1314 107 GLTTEISEQDVRDYFS-QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQ--VICGKEVDV 173 (275)
Q Consensus 107 ~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~e~a~~Ai~~~~~--~~~g~~i~v 173 (275)
.++..+.-++|..... .||.-.++... +. -..|-..+.++.++||+.++. ....-+|.+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL 84 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILL 84 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEE
Confidence 3567778888776554 57877777665 22 167899999999999999753 333444433
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.52 E-value=75 Score=21.04 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHh
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~ 77 (275)
.++--++.++++.+|++.+++ |+. |..+..+..+. + .--|+|++..-.+|....+.
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 344446779999999999987 664 77777666542 2 22599999887766655443
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.08 E-value=56 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=32.2
Q ss_pred eeeecCCCC-C--------CCHHHHHHhc--ccCCCeEEEEeccCCCCCCeeeEEEEEECC
Q psy1314 102 KIFVGGLTT-E--------ISEQDVRDYF--SQYGSITEFQQPFDKSKNMKKGFCFISFDD 151 (275)
Q Consensus 102 ~l~V~~l~~-~--------~~~~~l~~~F--~~~G~v~~v~i~~~~~~~~~~G~afV~f~~ 151 (275)
++.|-|+|. . .+..+|++.| ..|.++....+. .. .-..|++.|+|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecC
Confidence 456667776 2 3447899977 889886644444 32 2368999999986
No 415
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=40.77 E-value=46 Score=22.49 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=41.4
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 21 VGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
|=.++.-+.-++|..... .||.-.++..+.+ .-.|-..+.++.++|++.+...
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 345677788899988775 5899888888865 3678899999999999975433
No 416
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=39.22 E-value=44 Score=22.27 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=43.8
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCeeecc
Q psy1314 21 VGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNKKIDP 89 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~~i~v 89 (275)
|=.++.-+.-++|..... .||...++..+.+ .-.|-..+.++.++|++.+.....-+.+++
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRI 78 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRI 78 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEE
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEE
Confidence 334567788888888775 5899888888754 356888999999999997544444444433
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=37.95 E-value=8.8 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=18.2
Q ss_pred HHHHHhcccCCCeEEEEeccCCCCCCeeeEEEEEEC
Q psy1314 115 QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFD 150 (275)
Q Consensus 115 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~ 150 (275)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 567788888888776642 3789999876
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.11 E-value=64 Score=24.47 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=37.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hhcCCeeEEEEeeCCCCCCcccEEEEEEccH-HHHHHHHH
Q psy1314 18 KLFVGGLHRN---------TGEKEINDYF--SQYGEVESISIKNDPHTGQSRGFAFVTFTTQ-KAVDDLLA 76 (275)
Q Consensus 18 ~l~v~~Lp~~---------~t~~~l~~~f--~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~-e~a~~al~ 76 (275)
.+.|-|+|.. ....+|++.| ..|.++. ++.+.++. -..|++.|+|.+. .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 5678888862 3457899977 9998875 55555533 3678999999753 44445544
No 419
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=35.78 E-value=40 Score=23.07 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=40.4
Q ss_pred EcCCCCCCCHHHHHHHHh-hcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 21 VGGLHRNTGEKEINDYFS-QYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 21 v~~Lp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
|=.++.-+.-++|..... .||...++..+.+ .-.|-..+.++.++|++.+...
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 334677788888888775 5899888888755 2568889999999999975443
No 420
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=34.83 E-value=15 Score=32.03 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=38.0
Q ss_pred EEEcCCCCC---CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecC
Q psy1314 19 LFVGGLHRN---TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGN 84 (275)
Q Consensus 19 l~v~~Lp~~---~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g 84 (275)
-+||||..- -....+.++.++||+|..+.+-.. -.|...+++.++.++......+..
T Consensus 19 P~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~---------~~vvv~~p~~i~~vl~~~~~~f~~ 78 (479)
T 3tbg_A 19 PGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWT---------PVVVLNGLAAVREALVTHGEDTAD 78 (479)
T ss_dssp TTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTE---------EEEEEEHHHHHHHHHTTTGGGSCB
T ss_pred CcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCe---------eEEEECCHHHHHHHHHhCChhhcC
Confidence 367876532 234567888899999988776432 346677899998888655444433
No 421
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=33.63 E-value=1.3e+02 Score=21.82 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGE----VESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..+|++.+.+ |+. |.-..+...--.+++.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 45789999999976 443 222233333334668888877 7777776654
No 422
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=33.32 E-value=82 Score=19.11 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCC
Q psy1314 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD 79 (275)
Q Consensus 15 ~~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~ 79 (275)
...++.|.++.-.--...|++.+.+ -.|..+.+-.. .+.+-|+|.+.++..++|+..+
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 3457889999888888999999999 77888877543 2467788876667777777644
No 423
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.38 E-value=9 Score=26.68 Aligned_cols=54 Identities=2% Similarity=0.051 Sum_probs=32.2
Q ss_pred CCHHHHHHhcccCCCeEEEEeccCCCCCCeeeEEE--EEECCHHHHHHHHhcCCceeC
Q psy1314 112 ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCF--ISFDDQNVAEQVLANPKQVIC 167 (275)
Q Consensus 112 ~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~af--V~f~~~e~a~~Ai~~~~~~~~ 167 (275)
.++++|..+..+.. +..+.+.+....++. -|.. =.|.+.++|.+|+..|...|.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 34566666666664 344554433222222 2332 278999999999999865543
No 424
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=32.19 E-value=1.1e+02 Score=20.38 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=32.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCCCCcccE---EEEEEccHHHHHH
Q psy1314 19 LFVGGLHRNTGEKEINDYFSQ-------YGEVESISIKNDPHTGQSRGF---AFVTFTTQKAVDD 73 (275)
Q Consensus 19 l~v~~Lp~~~t~~~l~~~f~~-------~G~v~~~~i~~~~~tg~~~G~---afV~f~~~e~a~~ 73 (275)
|.+=.|..+++++++.++.+. .-.|.++.+-.+.. ...++| ..++|.+.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 444457778887765555433 45588888877643 444444 3456777766544
No 425
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=31.46 E-value=45 Score=28.90 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCCCCeEEEcCCCCC---CCHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCcee
Q psy1314 13 RNDERKLFVGGLHRN---TGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYI 82 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~---~t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~ 82 (275)
+-+...-+|+|+..- -....+.++.++||+|..+.+-. .-+|...+.++++.++......+
T Consensus 13 PgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvv~~~~~v~~il~~~~~~f 76 (476)
T 3e6i_A 13 PGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGS---------QRMVVMHGYKAVKEALLDYKDEF 76 (476)
T ss_dssp CCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHHTSTTTT
T ss_pred cCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECC---------ccEEEECCHHHHHHHHhcchHhh
Confidence 334444567887542 23467888889999997776632 35688899999999997654333
No 426
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=30.74 E-value=1e+02 Score=22.69 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEE----EeeCCCCCCcccEEEEEEccHHHHHHH
Q psy1314 26 RNTGEKEINDYFSQ-YGEVESIS----IKNDPHTGQSRGFAFVTFTTQKAVDDL 74 (275)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~v~~~~----i~~~~~tg~~~G~afV~f~~~e~a~~a 74 (275)
...+..||++.+.. |+.-.++. |...--.+++.|||.| |.+.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788999998876 44322222 2222224568888877 7777777654
No 427
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=29.46 E-value=61 Score=22.38 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.2
Q ss_pred eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCce
Q psy1314 43 VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHY 81 (275)
Q Consensus 43 v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~ 81 (275)
|.++....+ .+||.|||-.++.++..|++-..+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 666665433 4899999999999999999865443
No 428
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=28.35 E-value=1.5e+02 Score=20.62 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC-CCcccE---EEEEEccHHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQ-------YGEVESISIKNDPHT-GQSRGF---AFVTFTTQKAVDDLL 75 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~-------~G~v~~~~i~~~~~t-g~~~G~---afV~f~~~e~a~~al 75 (275)
-+.|.+=.|..+++++++.++.+. .-.|.++.+-.+... +..++| ..++|.+.++.+.-+
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 445566678888888766555443 345778887766432 344454 345677777665443
No 429
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=27.57 E-value=1.5e+02 Score=20.21 Aligned_cols=60 Identities=12% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC-CCcccE---EEEEEccHHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQ-------YGEVESISIKNDPHT-GQSRGF---AFVTFTTQKAVDDLL 75 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~-------~G~v~~~~i~~~~~t-g~~~G~---afV~f~~~e~a~~al 75 (275)
-+.|.+=.|..+++++++.++.+. .-.|.++.+-.+... +..++| ..++|.+.++.+.-+
T Consensus 11 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 11 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 345555568888888876655543 344777877666432 333444 456777877665544
No 430
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=27.31 E-value=1.4e+02 Score=20.04 Aligned_cols=59 Identities=14% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-------cCCeeEEEEeeCCCC---CCcccE---EEEEEccHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQ-------YGEVESISIKNDPHT---GQSRGF---AFVTFTTQKAVDDL 74 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~-------~G~v~~~~i~~~~~t---g~~~G~---afV~f~~~e~a~~a 74 (275)
-+.|.+-.|..+++++++.++.+. .-.|.++.+-.+... ...++| ..++|.+.++.+.-
T Consensus 9 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 9 VKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 445555668888888876555443 345778887666432 334444 35567777766533
No 431
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=26.85 E-value=1.6e+02 Score=20.34 Aligned_cols=59 Identities=5% Similarity=0.092 Sum_probs=35.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc-------CCeeEEEEeeCCCCCCcccE---EEEEEccHHHHHHHH
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQY-------GEVESISIKNDPHTGQSRGF---AFVTFTTQKAVDDLL 75 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~-------G~v~~~~i~~~~~tg~~~G~---afV~f~~~e~a~~al 75 (275)
-+.|.+-.|..+++++++.++.+.+ -.|.++.+-.+.. ...++| ..++|.+.++.++-+
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 3445555688888888766655443 3477777766643 444444 345666666655433
No 432
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=25.26 E-value=45 Score=16.25 Aligned_cols=12 Identities=33% Similarity=0.875 Sum_probs=10.4
Q ss_pred CHHHHHHHHhhc
Q psy1314 29 GEKEINDYFSQY 40 (275)
Q Consensus 29 t~~~l~~~f~~~ 40 (275)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
No 433
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.99 E-value=1.1e+02 Score=20.20 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=20.3
Q ss_pred CeEEEEeccCCCCCCeeeEEEEEECC
Q psy1314 126 SITEFQQPFDKSKNMKKGFCFISFDD 151 (275)
Q Consensus 126 ~v~~v~i~~~~~~~~~~G~afV~f~~ 151 (275)
.|++|+|..-...++-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57778777666667889999999975
No 434
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=23.91 E-value=1.5e+02 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.341 Sum_probs=38.0
Q ss_pred CeEEEcCCCC-CCCHHHHHHHHhhc-------CCeeEEEEeeCCCCCCcccEEEEE
Q psy1314 17 RKLFVGGLHR-NTGEKEINDYFSQY-------GEVESISIKNDPHTGQSRGFAFVT 64 (275)
Q Consensus 17 ~~l~v~~Lp~-~~t~~~l~~~f~~~-------G~v~~~~i~~~~~tg~~~G~afV~ 64 (275)
..+-|..++. .+++|+|...++++ .++-.+.+...+++|++--|-|..
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 4466777766 57999999999998 457788888888899988787764
No 435
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.04 E-value=75 Score=25.86 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q psy1314 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISI 48 (275)
Q Consensus 16 ~~~l~v~~Lp~~~t~~~l~~~f~~~G~v~~~~i 48 (275)
...+.|+|||..++..-|.++++. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356899999999999999999987 44544333
No 436
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.97 E-value=1.7e+02 Score=19.25 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=37.3
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cCC-eeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHH
Q psy1314 20 FVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76 (275)
Q Consensus 20 ~v~~Lp~~~t~~~l~~~f~~-~G~-v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~ 76 (275)
++=.++.++++.+|++.+++ |+. |..+..+..+. ..--|+|++..-++|....+
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHHH
Confidence 44456789999999999987 564 77777666542 12259999987776555443
No 437
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.58 E-value=73 Score=27.78 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCC----CHHHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEccHHHHHHHHHhCCceecCe
Q psy1314 16 ERKLFVGGLHRNT----GEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGDHYIGNK 85 (275)
Q Consensus 16 ~~~l~v~~Lp~~~----t~~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~~e~a~~al~~~~~~~~g~ 85 (275)
..--+||||..-. ....+.++..+||+|..+.+-. .-+|...+.+.++.++......+..+
T Consensus 14 ~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 14 LSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp BCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 3456788886432 2366788888999998887743 34577789999999987655444444
No 438
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.52 E-value=2.1e+02 Score=19.48 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCeeEEEEeeCCCCCCcccEEEEEEcc
Q psy1314 31 KEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT 67 (275)
Q Consensus 31 ~~l~~~f~~~G~v~~~~i~~~~~tg~~~G~afV~f~~ 67 (275)
-+|.+.+...| |.+-.|..+..++ .=|++++..+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 35677778786 5566665553322 2378888877
No 439
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=20.32 E-value=83 Score=20.79 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q psy1314 13 RNDERKLFVGGLHRNTGEKEINDYFSQY 40 (275)
Q Consensus 13 ~~~~~~l~v~~Lp~~~t~~~l~~~f~~~ 40 (275)
-.....|.|...|..++.++..+++++|
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 3455678899999999999999999888
No 440
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.26 E-value=1.4e+02 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=20.0
Q ss_pred CeEEEEeccCCCCCCeeeEEEEEECC
Q psy1314 126 SITEFQQPFDKSKNMKKGFCFISFDD 151 (275)
Q Consensus 126 ~v~~v~i~~~~~~~~~~G~afV~f~~ 151 (275)
.|++|+|..-...++-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47778777665567889999999965
No 441
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=25.44 E-value=22 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.2
Q ss_pred eeEEEEEECCHHHHHHHHhcC
Q psy1314 142 KGFCFISFDDQNVAEQVLANP 162 (275)
Q Consensus 142 ~G~afV~f~~~e~a~~Ai~~~ 162 (275)
.|-|.|.|.+.++.+-|+.++
T Consensus 77 egqamirfqnsdeqrlaiqkl 97 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKL 97 (137)
Confidence 577999999999998888875
Done!