RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1314
(275 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 113 bits (283), Expect = 1e-31
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDD 73
RKLF+GGL T ++ + +F Q+G + + DP+T +SRGF FVT+ T + VD
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 74 LLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEISEQDVRDYFSQYGS 126
+ A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG
Sbjct: 64 AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 123
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANPKQVICGKEVDVKRVKFNPE 181
I + D+ K+GF F++FDD + ++++ + G +V++ E
Sbjct: 124 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 55.8 bits (133), Expect = 3e-10
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
K+F+GGL+ E +++ +R +F Q+G++T+ D + +GF F+++ + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 162 PKQVICGKEVDVKRVKFNPETM 183
+ G+ V+ KR ++
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQ 89
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 75.0 bits (184), Expect = 3e-18
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
CK+F+GGL+ + +++ +R+YF Q+G + E D +GF F++F DQ ++VLA
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
Query: 161 NPKQVICGKEVDVKR 175
+ + K +D K
Sbjct: 61 QSRHELDSKTIDPKV 75
Score = 72.7 bits (178), Expect = 2e-17
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVTF Q VD +LA
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 78 GDHYIGNKKIDPKR 91
H + +K IDPK
Sbjct: 62 SRHELDSKTIDPKV 75
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 74.7 bits (183), Expect = 8e-18
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
+ RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVTF++ VD
Sbjct: 17 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
Query: 73 DLLAAGDHYIGNKKIDPKRVTKR 95
+AA H I + ++PKR R
Sbjct: 77 AAMAARPHSIDGRVVEPKRAVAR 99
Score = 73.2 bits (179), Expect = 3e-17
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 89 PKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148
P KR K+F+GGL+ E +E+ +R+Y+ Q+G +T+ D + +GF F++
Sbjct: 9 PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
Query: 149 FDDQNVAEQVLANPKQVICGKEVDVKRVK 177
F + +A I G+ V+ KR
Sbjct: 69 FSSMAEVDAAMAARPHSIDGRVVEPKRAV 97
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 73.5 bits (180), Expect = 1e-17
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
RKLF+GGL T ++ + +F Q+G + + DP+T +SRGF FVT+ T + VD
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 75 LAAGDHYIGNKKIDPKR 91
+ A H + + ++PKR
Sbjct: 65 MNARPHKVDGRVVEPKR 81
Score = 68.1 bits (166), Expect = 1e-15
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
K+F+GGL+ E +++ +R +F Q+G++T+ D + +GF F+++ + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 162 PKQVICGKEVDVKR 175
+ G+ V+ KR
Sbjct: 68 RPHKVDGRVVEPKR 81
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 72.3 bits (177), Expect = 3e-17
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+TF ++ V ++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 78 GDHYIGNKKIDPKR 91
H +G K + K
Sbjct: 61 KYHNVGLSKCEIKV 74
Score = 71.9 bits (176), Expect = 5e-17
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
KIFVGGL+ + E+ +R+YF +G + + P D N ++GFCFI+F ++ ++++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 162 PKQVICGKEVDVKR 175
+ + ++K
Sbjct: 61 KYHNVGLSKCEIKV 74
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 70.8 bits (173), Expect = 1e-16
Identities = 35/74 (47%), Positives = 52/74 (70%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV F ++VD ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 78 GDHYIGNKKIDPKR 91
+H + K IDPKR
Sbjct: 61 KEHKLNGKVIDPKR 74
Score = 69.6 bits (170), Expect = 3e-16
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
K+F+GGL+ + +++D++DYFS++G + + D +GF F+ F + ++V+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 162 PKQVICGKEVDVKR 175
+ + GK +D KR
Sbjct: 61 KEHKLNGKVIDPKR 74
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 68.5 bits (167), Expect = 1e-15
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKA 70
P D R +F L +++ D+FS G+V + I +D ++ +S+G A+V F ++
Sbjct: 13 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 72
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVN 97
V + + I + N
Sbjct: 73 VPLAIGLTGQRLLGVPIIVQASQAEKN 99
Score = 63.5 bits (154), Expect = 1e-13
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
+F L I +D+ D+FS G + + + D++ KG ++ F + +
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 77
Query: 160 ANPKQVICGKEVDVKRVK 177
Q + G + V+ +
Sbjct: 78 GLTGQRLLGVPIIVQASQ 95
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 67.3 bits (164), Expect = 3e-15
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 94 KRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN 153
KR + V GL + +EQD+++YFS +G + Q D KGF F+ F +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 61
Query: 154 VAEQVLANPKQVICGKEVDVKR 175
+V++ + +I G+ D K
Sbjct: 62 TQVKVMSQ-RHMIDGRWCDCKL 82
Score = 66.9 bits (163), Expect = 5e-15
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV FT + +++
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I + D K +
Sbjct: 69 QR-HMIDGRWCDCKLPNSK 86
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 63.6 bits (154), Expect = 5e-14
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
KIFVGG+ + E +RDYF QYG I + D+ K+GF F++FDD + ++++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 162 PKQVICGKEVDVKR 175
+ G +V++
Sbjct: 64 KYHTVNGHNCEVRK 77
Score = 62.0 bits (150), Expect = 2e-13
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVTF +VD ++
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 77 AGDHYIGNKKIDPKR 91
H + + ++
Sbjct: 63 QKYHTVNGHNCEVRK 77
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 64.2 bits (156), Expect = 6e-14
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDP-HTGQSRGFAFVTFTTQK 69
P + K+ V + ++EI + FS +GE++++ + TG RGF FV F T++
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 70 AVDDLLAAGDH--YIGNKKI 87
A H ++ +++
Sbjct: 63 DAKKAFNALCHSTHLYGRRL 82
Score = 58.4 bits (141), Expect = 6e-12
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKK-GFCFISFDDQNVAEQV 158
KI V + + +++++R+ FS +G + + P + GF F+ F + A++
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 67
Query: 159 LA--NPKQVICGKEVDVKRVKFNPET 182
+ G+ + ++
Sbjct: 68 FNALCHSTHLYGRRLVLEWADSEVTV 93
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 63.2 bits (153), Expect = 6e-14
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
KIFVGGL+ + +DV+ YF Q+G + + FDK+ N +GF F++F+ +++ E+V
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 162 PKQVICGKEVDVKR 175
I K V+ K+
Sbjct: 61 HFHEINNKMVECKK 74
Score = 59.4 bits (143), Expect = 2e-12
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
K+FVGGL NT +++ YF Q+G+V+ + D T + RGF FVTF ++ V+ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 78 GDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 61 HFHEINNKMVECKK 74
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 62.0 bits (150), Expect = 3e-13
Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEF--QQPFDKSKNMKKGFCFISFDDQNVAE-- 156
C++F+GG+ +++ + ++ K +GF F+ ++ A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 157 -QVLANPKQVICGKEVDVKRVK----FNPETMGSV 186
+ L + + G ++ V + + + M +V
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 96
Score = 52.0 bits (124), Expect = 2e-09
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVES--ISIKNDPHTGQSRGFAFVTFTTQKAVD--- 72
+LF+GG+ + +EI + ++ E I + ++RGFAFV + + +A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 73 DLLAAGDHYIGNKKI-----DPKR 91
L G + +I +P+
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 1e-12
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKN-----DPHTGQSRGFAFVTFTTQKAV 71
R+L+VG + E+ + D+F+ + ++ Q + FAF+ F +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKRVNP 98
+A + + +R
Sbjct: 62 TQAMAFDGIIFQGQSLKIRRPHDYQPL 88
Score = 56.3 bits (135), Expect = 4e-11
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITE-----FQQPFDKSKNMKKGFCFISFDDQNVAE 156
+++VG + I+E+ + D+F+ + N K F F+ F +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 157 QVLANPKQVICGKEVDVKRVK 177
Q +A + G+ + ++R
Sbjct: 63 QAMAFDGIIFQGQSLKIRRPH 83
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 59.7 bits (144), Expect = 2e-12
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++V GL ++++++ FSQYG I + D+ + +G FI FD + AE+ +
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 161 NP-KQVICGKEVDVKRVKF 178
Q G + VKF
Sbjct: 67 GLNGQKPSGATEPI-TVKF 84
Score = 53.5 bits (128), Expect = 3e-10
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
+ L+V GL + +KE+ FSQYG + + I D TG SRG F+ F + ++
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 75 LAAGDHYIGNKKIDPKRV 92
+ + + +P V
Sbjct: 65 IKGLNGQKPSGATEPITV 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 58.9 bits (142), Expect = 5e-12
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 10 GPG--RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT 67
GP RN + ++VGGL E + + F Q G V + + D TGQ +G+ FV F +
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 68 QKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95
++ D + D + K I + +
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAH 89
Score = 57.3 bits (138), Expect = 2e-11
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++VGGL ++SE + + F Q G + P D+ +G+ F+ F + A+ +
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 161 N-PKQVICGKEVDVKRVKFNPETM 183
+ GK + V + + + +
Sbjct: 70 IMDMIKLYGKPIRVNKASAHNKNL 93
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 58.4 bits (141), Expect = 6e-12
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
C ++VG L+ +E+ + + FS+ G I + DK K GFCF+ + + AE +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 161 NP-KQVICGKEVDV 173
+ + +
Sbjct: 68 YINGTRLDDRIIRT 81
Score = 53.4 bits (128), Expect = 4e-10
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
L+VG L T E++I + FS+ G+++ I + D + GF FV + ++ ++ +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 77 AGD-HYIGNKKI 87
+ + ++ I
Sbjct: 68 YINGTRLDDRII 79
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 57.6 bits (139), Expect = 8e-12
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
L+VG LH + E + + FS G + SI + D T +S G+A+V F + L
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 78 GD-HYIGNKKI 87
+ I K +
Sbjct: 62 MNFDVIKGKPV 72
Score = 56.9 bits (137), Expect = 2e-11
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
++VG L +++E + + FS G I + D G+ +++F AE+ L
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 162 -PKQVICGKEVDVK 174
VI GK V +
Sbjct: 62 MNFDVIKGKPVRIM 75
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 57.7 bits (139), Expect = 1e-11
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
+ L+V L R + +++ F +YG + +I D TG+ RG AFV + ++ +
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 75 LAAGDHYI---GNKKI 87
++A ++ I G++ +
Sbjct: 65 ISALNNVIPEGGSQPL 80
Score = 55.3 bits (133), Expect = 7e-11
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++V L I++ + F +YGSI + DK +G F+ ++ + A++ ++
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 161 N 161
Sbjct: 67 A 67
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 57.4 bits (138), Expect = 1e-11
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
K ++VGGL E+ ++ + F +G IT+ Q P D +GF F+ F+ A +
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 160 ANP-KQVICGKEVDVKRVK 177
N + + G+ + V K
Sbjct: 65 DNMNESELFGRTIRVNLAK 83
Score = 55.1 bits (132), Expect = 9e-11
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
+R L+VGGL +K ++ F +G++ I I D T + RGFAFV F +
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 75 LAAGD-HYIGNKKID-----PKRV 92
+ + + + I P R+
Sbjct: 64 IDNMNESELFGRTIRVNLAKPMRI 87
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 56.6 bits (136), Expect = 5e-11
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
R L++ L +E+ D F +YG + I +T ++RG A+V + +
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQI---RVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 77 AGDHY-IGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITE 129
+ + N+ + V + T+ E+ ++ +YG T+
Sbjct: 65 HLSGFNVCNRYL-------VVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTD 111
Score = 52.7 bits (126), Expect = 1e-09
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+++ L +I+ +++ D F +YG I + + +G ++ ++D A+
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNACD 64
Query: 161 N-PKQVICGKEVDVKRVKFNPE 181
+ +C + + V N
Sbjct: 65 HLSGFNVCNRYLVVLYYNANRA 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 56.3 bits (135), Expect = 5e-11
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
KIFVGGL ++ +R YF +G I E D+ +G+ F++ D+ AE+
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 161 NPKQVICGKEVDVKR 175
+P +I G++ +V
Sbjct: 71 DPNPIIDGRKANVNL 85
Score = 55.1 bits (132), Expect = 1e-10
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
K+FVGGL +T + + YF +G++E + D TG+SRG+ FVT + A +
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 75 LAAGDHYIGNKKIDPKRVTKRVNP 98
+ I +K + P
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.0 bits (132), Expect = 8e-11
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
KLF+GGL + ++ + + +G +++ ++ D TG S+G+AF + D +A
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 77 AGD-HYIGNKKIDPKRVTKR 95
+ +G+KK+ +R +
Sbjct: 62 GLNGMQLGDKKLLVQRASVG 81
Score = 54.6 bits (131), Expect = 1e-10
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
K+F+GGL +++ V++ + +G + F D + + KG+ F + D NV +Q +A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 162 P-KQVICGKEVDVKRVKFNPE 181
+ K++ V+R +
Sbjct: 63 LNGMQLGDKKLLVQRASVGAK 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 54.7 bits (131), Expect = 1e-10
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
C + V GL+ +E+D+R+ FS+YG I + +D+ +GF F+ F++ + A++
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 161 NP-KQVICGKEVDV 173
+ G+ + V
Sbjct: 70 RANGMELDGRRIRV 83
Score = 52.0 bits (124), Expect = 9e-10
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
L V GL T E+++ + FS+YG + +SI D + +SRGFAFV F +
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 77 AGD-HYIGNKKI 87
+ + ++I
Sbjct: 70 RANGMELDGRRI 81
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 54.3 bits (130), Expect = 2e-10
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDK---SKNMKKGFCFISFDDQNVAEQVL 159
+F+ L +E+ ++ FS+ G+I K + GF F+ + A++ L
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 160 ANP-KQVICGKEVDVKRVK 177
+ G +++V+ +
Sbjct: 61 KQLQGHTVDGHKLEVRISE 79
Score = 53.5 bits (128), Expect = 3e-10
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVES---ISIKNDPHTGQSRGFAFVTFTTQKAVDDLL 75
LF+ L+ +T E+ + FS+ G ++S KN S GF FV + + L
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 76 AAGD-HYIGNKKIDPKRVTKRVNP 98
H + K++ + + P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 53.8 bits (129), Expect = 2e-10
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
+ V L +++++++ F G I + D G+ F+ F + +++ +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 160 ANP-KQVICGKEVDVKRVK 177
+ K + V +
Sbjct: 62 KVLNGITVRNKRLKVSYAR 80
Score = 49.6 bits (118), Expect = 8e-09
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
L V L ++ ++E+ F G + + I D TG S G+AFV FT++ +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 78 GD-HYIGNKKI 87
+ + NK++
Sbjct: 64 LNGITVRNKRL 74
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.9 bits (129), Expect = 3e-10
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
++ V + + D+R F Q+G I + + F+ + KGF F++F++ A++
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREK 70
Query: 162 -PKQVICGKEVDVKRVKFNPET 182
V+ G++++V T
Sbjct: 71 LHGTVVEGRKIEVNNATARVMT 92
Score = 51.6 bits (123), Expect = 2e-09
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAV 71
++ ++L V + + ++ F Q+G++ + I + S+GF FVTF
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADA 64
Query: 72 DDLLAAGD-HYIGNKKIDPKRVTKRVN 97
D + +KI+ T RV
Sbjct: 65 DRAREKLHGTVVEGRKIEVNNATARVM 91
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 53.5 bits (128), Expect = 3e-10
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+FVG T +++E ++R++FSQYG + + + F F++F D +A+ +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMD-----VFIPKPFRAFAFVTFADDQIAQSLCG 60
Query: 161 NPKQVICGKEVDVKRVK 177
+I G V + +
Sbjct: 61 ED-LIIKGISVHISNAE 76
Score = 50.8 bits (121), Expect = 3e-09
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAV 71
G + +FVG + E E+ ++FSQYG+V + I FAFVTF +
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIA 55
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
L I + +
Sbjct: 56 QSLCGED-LIIKGISVHISNAEPK 78
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 53.8 bits (129), Expect = 3e-10
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 84 NKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKG 143
K++ + V + +P C ++ GG+ + +++Q +R FS +G I E + +KG
Sbjct: 2 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKG 55
Query: 144 FCFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNP 180
+ F+ F A + + I G V K +P
Sbjct: 56 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 93
Score = 46.9 bits (111), Expect = 9e-08
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
++ GG+ ++ + FS +G++ I + + ++FV F+T ++
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHA 70
Query: 75 LAAGD-HYIGNKKI 87
+ + + I +
Sbjct: 71 IVSVNGTTIEGHVV 84
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 53.2 bits (127), Expect = 4e-10
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
DE KLFVGGL +T E+ + FS+YG++ + + D T +SRGF FVTF D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 75 LAAGD-HYIGNKKIDPKRVTKR 95
+ A + + ++I + K
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 50.1 bits (119), Expect = 6e-09
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
+ K+FVGGL+ + +EQ + FS+YG I+E D+ +GF F++F++ + A+ +
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 160 AN-PKQVICGKEVDVKRVK 177
+ + G+++ V +
Sbjct: 65 MAMNGKSVDGRQIRVDQAG 83
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.9 bits (126), Expect = 5e-10
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
C +++ +++++RD + + N + F +I + A +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 161 NP-KQVICGKEVDVK 174
I G + K
Sbjct: 62 KLNGLKIEGYTLVTK 76
Score = 47.1 bits (111), Expect = 5e-08
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLL 75
E L++ + ++ I D V SR FA++ T+++ +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 76 AAGD-HYIGNKKIDPKRVTKRVNPL 99
+ I + K NPL
Sbjct: 61 EKLNGLKIEGYTL---VT-KVSNPL 81
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 52.8 bits (126), Expect = 6e-10
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKK-GFCFISFDDQNVAEQVL-A 160
IF+G L EI E+ + D FS +G I + + G+ FI+F + ++ + A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 161 NPKQVICGKEVDVKR 175
Q +C + + V
Sbjct: 61 MNGQYLCNRPITVSY 75
Score = 51.3 bits (122), Expect = 2e-09
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESIS-IKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
+F+G L EK + D FS +G + I DP TG S+G+AF+ F + A D + A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 78 GD-HYIGNKKIDPKRVTKR 95
+ Y+ N+ I K+
Sbjct: 61 MNGQYLCNRPITVSYAFKK 79
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 52.9 bits (126), Expect = 8e-10
Identities = 13/82 (15%), Positives = 28/82 (34%)
Query: 96 VNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155
VN K + + I++ DV + + G + F +++ A
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 156 EQVLANPKQVICGKEVDVKRVK 177
+ ++ + G+E V V
Sbjct: 64 RKSERLHRKKLNGREAFVHVVT 85
Score = 46.8 bits (110), Expect = 1e-07
Identities = 10/86 (11%), Positives = 25/86 (29%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQK 69
G + + + + + + ++ + E+ + GQ G A V F +
Sbjct: 2 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNED 61
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+ ++ VT
Sbjct: 62 DARKSERLHRKKLNGREAFVHVVTLE 87
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 52.6 bits (126), Expect = 9e-10
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 97 NPLKCKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155
+ ++F+G L T + + DV FS+YG I ++ KGF F+ + ++ A
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGC--------SVHKGFAFVQYVNERNA 63
Query: 156 EQVLAN-PKQVICGKEVDVKRVK 177
+A ++I G+ +D+
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLAA 86
Score = 49.9 bits (119), Expect = 8e-09
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 5 ANGTAG--PGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFA 61
++G++G R+ ++F+G L+ + ++ FS+YG++ S+ GFA
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFA 53
Query: 62 FVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95
FV + ++ +A D I + +D +
Sbjct: 54 FVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP 88
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 51.5 bits (123), Expect = 1e-09
Identities = 12/74 (16%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
K+ V L +S+ D+++ F+++G++ + +D+S + F+ + A + +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG-TADVHFERKADALKAMKQ 60
Query: 162 -PKQVICGKEVDVK 174
+ G+ ++++
Sbjct: 61 YNGVPLDGRPMNIQ 74
Score = 48.8 bits (116), Expect = 1e-08
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
KL V L + +I + F+++G ++ ++ +G+S G A V F + +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQ 60
Query: 78 GD-HYIGNKKI 87
+ + + +
Sbjct: 61 YNGVPLDGRPM 71
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.0 bits (124), Expect = 1e-09
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
I V L+ + E D+++ F +GSI+ DK+ KGF FISF + A + +A
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 161 N-PKQVICGKEVDVKRVK 177
++V+ K
Sbjct: 69 GVSGFGYDHLILNVEWAK 86
Score = 50.4 bits (120), Expect = 5e-09
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
+D + V L +T E ++ + F +G + I + D TGQS+GFAF++F ++
Sbjct: 5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 64
Query: 73 DLLAAGD-HYIGNKKIDPKRVTKRVN 97
+A + ++ + N
Sbjct: 65 RAIAGVSGFGYDHLILNVEWAKPSTN 90
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.2 bits (122), Expect = 2e-09
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA- 160
K+++G L+ ++ D+R F +K G+ F+ + DQN A + +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 161 -NPKQVICGKEVDVKR 175
+ K + GK ++V
Sbjct: 57 LSGKVELHGKIMEVDY 72
Score = 50.1 bits (119), Expect = 5e-09
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 8/80 (10%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
KL++G L ++ F G+AFV + Q +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 78 --GDHYIGNKKIDPKRVTKR 95
G + K ++ +
Sbjct: 57 LSGKVELHGKIMEVDYSVSK 76
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 50.6 bits (120), Expect = 3e-09
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+ V L ++ V YF G I S F I F + A +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 162 PKQVICGKEVDVKRV 176
+V+ E+ V +
Sbjct: 60 THKVVGQNEIIVSHL 74
Score = 49.1 bits (116), Expect = 9e-09
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAA 77
+ V L ++ + ++ YF G + + + + ++ FA + F +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAITK 59
Query: 78 GDHYIGNKKIDPKRVT 93
+G +I +T
Sbjct: 60 THKVVGQNEIIVSHLT 75
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 51.3 bits (122), Expect = 3e-09
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++FV L+ SE+D+ FS YG ++E P D KGF F++F A + A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 161 N-PKQVICGKEVDVKRVKFNPETMGS 185
QV G+ + V E S
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQS 94
Score = 47.0 bits (111), Expect = 9e-08
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAV 71
G + +LFV L + E+++ FS YG + + D T + +GFAFVTF +
Sbjct: 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 63
Query: 72 DDLLAAGD-HYIGNKKIDPKRVTKR 95
A D + + T +
Sbjct: 64 VKAYAEVDGQVFQGRMLHVLPSTIK 88
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 4e-09
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
++VG L+ +++E + FSQ G + + +CF+ F + A LA
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRDAAAALAA 67
Query: 162 -PKQVICGKEVDVKRVK 177
+ I GKEV V
Sbjct: 68 MNGRKILGKEVKVNWAT 84
Score = 48.1 bits (114), Expect = 3e-08
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
R L+VG L R+ E I FSQ G +S + + + + FV F +
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAA 62
Query: 73 DLLAAGD-HYIGNKKI 87
LAA + I K++
Sbjct: 63 AALAAMNGRKILGKEV 78
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.9 bits (121), Expect = 4e-09
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 5 ANGTAGPGRNDE--RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAF 62
++G++G F+G L + E+ I ++F + + + +GF +
Sbjct: 2 SSGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGY 61
Query: 63 VTFTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
F ++ L+ + +GNK+I +
Sbjct: 62 AEFEDLDSLLSALSLNEESLGNKRIRVDVADQA 94
Score = 49.7 bits (118), Expect = 1e-08
Identities = 13/75 (17%), Positives = 31/75 (41%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
F+G L +++E+ ++++F + KGF + F+D + L+
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 161 NPKQVICGKEVDVKR 175
++ + K + V
Sbjct: 76 LNEESLGNKRIRVDV 90
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 50.3 bits (119), Expect = 6e-09
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVT 64
++ G LF+G L+ N E+ S+ +++ + TG +R F +V
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RTGTNRKFGYVD 60
Query: 65 FTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
F + + ++ L + +I ++ R
Sbjct: 61 FESAEDLEKALELTGLKVFGNEIKLEKPKGR 91
Score = 49.2 bits (116), Expect = 1e-08
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+F+G L S +++ S+ + + ++ + F ++ F+ E+ L
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNRKFGYVDFESAEDLEKALE 72
Query: 161 NPKQVICGKEVDVKRVK 177
+ G E+ +++ K
Sbjct: 73 LTGLKVFGNEIKLEKPK 89
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 50.1 bits (119), Expect = 7e-09
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQK 69
GP N++ +++VG L + K+I D F +YG + I +KN FAFV F +
Sbjct: 8 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPR 64
Query: 70 AVDDLLAAGD-HYIGNKKI 87
+D + D + ++
Sbjct: 65 DAEDAVYGRDGYDYDGYRL 83
Score = 50.1 bits (119), Expect = 7e-09
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
C+I+VG L +I +D+ D F +YG+I + F F+ F+D AE +
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVY 71
Query: 161 NP-KQVICGKEVDVKRVK 177
G + V+ +
Sbjct: 72 GRDGYDYDGYRLRVEFPR 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 49.7 bits (118), Expect = 7e-09
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
K + V L +++++ R F G I + DK G+ F+++ D AE+ +
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 160 ANP-KQVICGKEVDVKRVK 177
+ K + V +
Sbjct: 62 NTLNGLRLQTKTIKVSYAR 80
Score = 44.7 bits (105), Expect = 4e-07
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
L V L +N ++E F GE+ES + D TGQS G+ FV + K + +
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 77 AGD-HYIGNKKI 87
+ + K I
Sbjct: 63 TLNGLRLQTKTI 74
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 49.8 bits (118), Expect = 8e-09
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+F+ L+ + E+ + + Q+G + + KG F F Q A++ LA
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 161 --NPKQVICGKEVDVKRVK 177
+ + G ++D +++K
Sbjct: 69 AASLEAEGGGLKLDGRQLK 87
Score = 47.1 bits (111), Expect = 9e-08
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDD 73
+ + +F+ L ++ E+ + + Q+G+++ + + P T S+G AF F TQ+A
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 74 LLAAGDHYI--GNKKIDPKRVTKRVNP 98
LAA G K+D +++ +V+
Sbjct: 66 CLAAASLEAEGGGLKLDGRQL--KVDL 90
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.1 bits (119), Expect = 8e-09
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 93 TKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152
+++ P +F+ L E +QD+ F +G++ + DK N+ K F F+S+D+
Sbjct: 11 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 70
Query: 153 NVAEQVLAN-PKQVICGKEVDVKRVK 177
A+ + + I K + V+ +
Sbjct: 71 VSAQAAIQSMNGFQIGMKRLKVQLKR 96
Score = 47.8 bits (113), Expect = 6e-08
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 1 MAYRANGTAGPGRN--DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSR 58
+ ++ G AG + + LF+ L + G++++ F +G V S + D T S+
Sbjct: 1 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 59 GFAFVTFTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95
F FV++ + + + + IG K++ + +
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 98
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 49.3 bits (117), Expect = 1e-08
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQ 68
A G+ + V + EI D+F Y + G G A V F ++
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 61
Query: 69 KAVDDLLAAGD-HYIGNKKI 87
+ + IG++K+
Sbjct: 62 DEATAAVIDLNDRPIGSRKV 81
Score = 45.4 bits (107), Expect = 2e-07
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 98 PLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQ 157
P I V + +S ++ D+F Y I K M G ++F+ ++ A
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 66
Query: 158 VLAN-PKQVICGKEVDVK 174
+ + + I ++V +
Sbjct: 67 AVIDLNDRPIGSRKVKLV 84
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.4 bits (115), Expect = 2e-08
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
+ ++FVG L +I+E+++R F +YG E + KGF FI + + +AE
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAK 61
Query: 160 AN-PKQVICGKEVDVKR 175
+ GK++ V+
Sbjct: 62 VELDNMPLRGKQLRVRF 78
Score = 41.9 bits (98), Expect = 5e-06
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDD 73
+LFVG L + E+E+ F +YG+ + I D F F+ T+ +
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEI 59
Query: 74 LLAAGD-HYIGNKKI 87
D + K++
Sbjct: 60 AKVELDNMPLRGKQL 74
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 47.8 bits (113), Expect = 4e-08
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 101 CKIFVGGLTTE-ISEQDVRDYFSQYGSITEFQQPFDKSKNMK-KGFCFISFDDQNVAEQV 158
+I + L+TE + E +R+ F +GSI + P + ++ F+ F++++ AE+
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 159 LANPKQVICGKEVDVKRVKFNP 180
L + ++ +E+ V P
Sbjct: 65 LQMNRSLLGNREISVSLADKKP 86
Score = 45.1 bits (106), Expect = 3e-07
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 15 DERKLFVGGLHRN-TGEKEINDYFSQYGEV-ESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
+ R++ + L E + + F +G + + + AF+ F + + +
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 73 DLLAAGDHYIGNKKIDPKRVTKR 95
L +GN++I K+
Sbjct: 63 RALQMNRSLLGNREISVSLADKK 85
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 47.8 bits (113), Expect = 4e-08
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 89 PKRVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148
P+R + +FV + E E ++++ F YG I D+ KG+ +
Sbjct: 1 PQRSVE-----GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 55
Query: 149 FDDQNVAEQVLAN-PKQVICGKEVDVKR 175
++ A I G+ + V
Sbjct: 56 YETHKQALAAKEALNGAEIMGQTIQVDW 83
Score = 42.4 bits (99), Expect = 3e-06
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 11 PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQK 69
P R+ E LFV +H E EI + F YGE+++I + D TG S+G+A V + T K
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 70 AVDDLLAAGD-HYIGNKKI 87
A + I + I
Sbjct: 61 QALAAKEALNGAEIMGQTI 79
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 47.8 bits (113), Expect = 4e-08
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+++ G T+ + D++++ G + Q K K F+ FD A++ +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG-SIFVVFDSIESAKKFVET 66
Query: 162 PKQVICGKEVDVKRVK 177
P Q ++ +
Sbjct: 67 PGQKYKETDLLILFKD 82
Score = 45.5 bits (107), Expect = 2e-07
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
R +++ G + +I ++ G+V +I +G FV F + ++
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI-QMRRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 75 LAAGDHYIGNKKI 87
+ +
Sbjct: 64 VETPGQKYKETDL 76
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.9 bits (113), Expect = 5e-08
Identities = 14/77 (18%), Positives = 32/77 (41%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+ + GL S++++ +FS + + G F+ F Q +AE+ L
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75
Query: 161 NPKQVICGKEVDVKRVK 177
K+ I + +++ +
Sbjct: 76 KHKERIGHRYIEIFKSS 92
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 47.3 bits (112), Expect = 6e-08
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
++ +F+ L ++ K + D FS +G + S + D + S+G+ FV F TQ+A +
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAE 62
Query: 73 DLLAAGD-HYIGNKKIDPKRVTKR 95
+ + + ++K+ R R
Sbjct: 63 RAIEKMNGMLLNDRKVFVGRFKSR 86
Score = 47.0 bits (111), Expect = 7e-08
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
IF+ L I + + D FS +G+I + D++ + + F+ F+ Q AE+ +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEK 67
Query: 162 -PKQVICGKEVDVKRVK 177
++ ++V V R K
Sbjct: 68 MNGMLLNDRKVFVGRFK 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 47.0 bits (111), Expect = 8e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
R L L N E E+ + F + I+ G+S+G A++ F ++ +
Sbjct: 15 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 69
Query: 75 LAAGD-HYIGNKKIDPKRVTKR 95
L I + + ++
Sbjct: 70 LEEKQGAEIDGRSVSLYYTGEK 91
Score = 44.6 bits (105), Expect = 6e-07
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+ L+ I+E ++++ F + KG +I F + AE+ L
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72
Query: 162 P-KQVICGKEVDVKRVK 177
I G+ V +
Sbjct: 73 KQGAEIDGRSVSLYYTG 89
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.1 bits (111), Expect = 9e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKN--------DPHTGQSRGFAFVT 64
+D ++V GL+ + ++ D+F Q G V+ D TG+ +G A V+
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 65 FTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95
+ + D K+ K+
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
Score = 47.1 bits (111), Expect = 1e-07
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPF--------DKSKNMKKGFCFIS 148
+ I+V GL ++ D+ D+F Q G + ++ DK KG +S
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 149 FDDQNVAEQVLANP-KQVICGKEVDVKRVKFNP 180
++D A+ + + G ++ V + P
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 45.8 bits (108), Expect = 2e-07
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 100 KCKIFVGGLTTEISEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155
I++ L +I + +++ FS++ + +G F+ F + + A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRF---GQILDILVSRSLKMRGQAFVIFKEVSSA 59
Query: 156 EQVLAN-PKQVICGKEVDVKRVK 177
L + K + ++ K
Sbjct: 60 TNALRSMQGFPFYDKPMRIQYAK 82
Score = 40.4 bits (94), Expect = 1e-05
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 17 RKLFVGGLHRNTGEKEI----NDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
+++ L+ + E+ + FS++G++ I + RG AFV F +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK---MRGQAFVIFKEVSSAT 60
Query: 73 DLLAAGD-HYIGNKKI 87
+ L + +K +
Sbjct: 61 NALRSMQGFPFYDKPM 76
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 46.0 bits (108), Expect = 2e-07
Identities = 13/77 (16%), Positives = 29/77 (37%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+++ GL E + V D+F + + + G F+ F ++ + L
Sbjct: 19 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 78
Query: 161 NPKQVICGKEVDVKRVK 177
KQ + + + V +
Sbjct: 79 RHKQYMGNRFIQVHPIT 95
Score = 45.3 bits (106), Expect = 6e-07
Identities = 19/83 (22%), Positives = 32/83 (38%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVD 72
+++ GL K + D+F + VE G++ G FV F +
Sbjct: 15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYK 74
Query: 73 DLLAAGDHYIGNKKIDPKRVTKR 95
L Y+GN+ I +TK+
Sbjct: 75 AALCRHKQYMGNRFIQVHPITKK 97
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 45.4 bits (107), Expect = 2e-07
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
+ L+V L +T E+ I F+ +K + R +AFV F+ ++ + +
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK------KIRDYAFVHFSNREDAVEAMK 62
Query: 77 AGD-HYIGNKKI 87
A + + I
Sbjct: 63 ALNGKVLDGSPI 74
Score = 43.1 bits (101), Expect = 2e-06
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
++V L SE+ + F+ + + + F+ F ++ A + +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKA 63
Query: 162 -PKQVICGKEVDVKRVK 177
+V+ G ++V K
Sbjct: 64 LNGKVLDGSPIEVTLAK 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.1 bits (106), Expect = 4e-07
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+FVG + E +E+ ++D FS+ G + F+ +D+ KG+ F + DQ A + N
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 162 -PKQVICGKEVDVKRVK 177
+ G+ + V
Sbjct: 70 LNGREFSGRALRVDNAA 86
Score = 42.4 bits (99), Expect = 4e-06
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
R +FVG + E+++ D FS+ G V S + D TG+ +G+ F + Q+
Sbjct: 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 66
Query: 75 LAAGD-HYIGNKKIDPKRVTKRVNPLKCKIFVGG 107
+ + + + N + K G
Sbjct: 67 MRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 44.0 bits (103), Expect = 5e-07
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162
+++ GL ++QD+ YG I + DK+ N KG+ F+ FD + A++ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA- 59
Query: 163 KQVICGKEVDVKRVK 177
+ V + K
Sbjct: 60 ---LKASGVQAQMAK 71
Score = 36.3 bits (83), Expect = 3e-04
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78
L++ GL T ++++ YG++ S D T + +G+ FV F + A + A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 79 DHYIGNKKIDPKRV 92
+ +
Sbjct: 61 K----ASGVQAQMA 70
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 44.9 bits (105), Expect = 1e-06
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+ V + T + E +R F +YG I + D+ +G+ F+ F + A+Q +A
Sbjct: 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA 102
Query: 161 NP-KQVICGKEVDVKRVKFNPETMGSVSGAVRGA 193
I K + V + G +GAV
Sbjct: 103 GLNGFNILNKRLKVALAASGHQRPGI-AGAVGDG 135
Score = 39.1 bits (90), Expect = 1e-04
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKA 70
P + R L V + E ++ F +YG +ES+ I D T QSRG+ FV F + +
Sbjct: 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS 96
Query: 71 VDDLLAAGD-HYIGNKKIDPKRVTKR 95
+A + I NK++
Sbjct: 97 AQQAIAGLNGFNILNKRLKVALAASG 122
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.0 bits (103), Expect = 1e-06
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+++ L+ ++E+D+ F+++ F +G FI+F ++ +A Q L
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 161 NP-KQVICGKEVDVKRVK 177
+ GK + ++ K
Sbjct: 79 LVNGYKLYGKILVIEFGK 96
Score = 40.5 bits (94), Expect = 2e-05
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
+ L++ L E+++ F+++ E + I+ TG+ RG AF+TF ++ L
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 77 AGD-HYIGNKKI 87
+ + + K +
Sbjct: 79 LVNGYKLYGKIL 90
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.0 bits (101), Expect = 2e-06
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+ V G + + F+QYG+I + + I + + A + L+
Sbjct: 5 TWVTVFGFPQASAS-YILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALS 57
Query: 161 NPKQVICGKE-VDVKR 175
++ + VK
Sbjct: 58 KDGRIFGESIMIGVKP 73
Score = 38.0 bits (88), Expect = 9e-05
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
D+ + V G + + I F+QYG + + N + + + ++
Sbjct: 3 DDTWVTVFGFPQASAS-YILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKA 55
Query: 75 LAAGDHYIGNKKI 87
L+ G +
Sbjct: 56 LSKDGRIFGESIM 68
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.2 bits (96), Expect = 1e-05
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT 67
+A R+ + + + E+ + +YGEVE +++ D G +V F
Sbjct: 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRR 77
Query: 68 QKAVDDLLAAGD-HYIGNKKI 87
++ + + + + + I
Sbjct: 78 EEDAEKAVIDLNNRWFNGQPI 98
Score = 38.1 bits (88), Expect = 1e-04
Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 88 DPKRVTKRVNPLKCKI---FVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF 144
+P+ ++ + L+ + + E E+ + +YG + E D + G
Sbjct: 12 NPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEM-NVCDNLGDHLVGN 70
Query: 145 CFISFDDQNVAEQVLANP-KQVICGKEVDVKRVKFNP 180
++ F + AE+ + + + G+ + + +P
Sbjct: 71 VYVKFRREEDAEKAVIDLNNRWFNGQPI---HAELSP 104
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.9 bits (95), Expect = 2e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 98 PLKCK-IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD--QNV 154
+ C F G L + +D+ FS +G I I F + +
Sbjct: 8 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF------VRGAKEGIILFKEKAKEA 61
Query: 155 AEQVLANPKQVICGKEVDVKRVKFNPET 182
+ + + +V E
Sbjct: 62 LGKAKDANNGNLQLRNKEVTWEVLEGEV 89
Score = 38.6 bits (89), Expect = 1e-04
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
F G L T ++++ FS +GE++ I G ++A+
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKE----KAKEALGKAKD 67
Query: 77 AGDHYIGNKKIDPKRVTKR 95
A + + + +
Sbjct: 68 ANNGNLQLRNKEVTWEVLE 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.0 bits (93), Expect = 2e-05
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++V G +++ +R FS F D S + + F++++ A+Q +A
Sbjct: 6 NTLYVYGE--DMTPTLLRGAFSP------FGNIIDLSMDPPRNCAFVTYEKMESADQAVA 57
Query: 161 NP-KQVICGKEVDVKRVKFNP 180
+ ++ V + P
Sbjct: 58 ELNGTQVESVQLKVNIARKQP 78
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.7 bits (92), Expect = 3e-05
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 94 KRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN 153
+ + P + + + +SE+D++ FS G + + + F + I
Sbjct: 4 QNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF----QKDRKMALIQMGSVE 59
Query: 154 VAEQVLA--NPKQVICGKEVDVKRVKF 178
A Q L + + + RV F
Sbjct: 60 EAVQALIDLHNHDLGENHHL---RVSF 83
Score = 31.6 bits (71), Expect = 0.021
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
L + + + E+++ FS G V +K + R A + + +
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAV---Q 63
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKCKI 103
A + + + RV+ K I
Sbjct: 64 ALIDLHNHDLGENHHL--RVSFSKSTI 88
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.1 bits (93), Expect = 3e-05
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
+ + GL +E D+ ++FS G + F A +A
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73
Query: 161 NPKQVICGKEVDVKRVK 177
K + + V++
Sbjct: 74 KDKANMQHRYVELFLNS 90
Score = 38.6 bits (89), Expect = 9e-05
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVT 64
+ + + + GL E +I ++FS + G+ G A V
Sbjct: 4 GSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIG--PDGRVTGEADVE 61
Query: 65 FTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
F T + +A + ++ ++ +
Sbjct: 62 FATHEDAVAAMAKDKANMQHRYVELFLNSTA 92
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 40.0 bits (93), Expect = 3e-05
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKA 70
G++ ++ V L ++ FS++G V I ++ A + + +
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVS 57
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEISEQDVRDY 120
+ D + I T R++ K L + + RDY
Sbjct: 58 AQHAKLSLD----GQNIYNACCTLRIDFSKLT----SLNVKYNNDKSRDY 99
Score = 40.0 bits (93), Expect = 4e-05
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+I V L ++ + FS++G++ + + + + + D A+ +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKLS 64
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.8 bits (92), Expect = 4e-05
Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 91 RVTKRVNPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFD 150
++ K+ +++ L + EQ++ + +G + + D S +
Sbjct: 9 QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 68
Query: 151 DQNVAEQVLANPKQVICGKEVDVK-----RVKF 178
+ + + I KF
Sbjct: 69 TEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 101
Score = 35.9 bits (82), Expect = 9e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDL 74
D L++ L + E+E+ + +G+V S I D +T+K +
Sbjct: 17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVI 76
Query: 75 LAAGDHYIGNKKIDPKRVTKRVNPLKCK 102
+I V+ PL CK
Sbjct: 77 GHFNGKFIKTPPG----VSAPTEPLLCK 100
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 38.3 bits (88), Expect = 1e-04
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 17 RKLFVGGLHRNTGEKEI---NDYFSQYGEVESISIKNDPHTGQS---RGFAFVTFTTQKA 70
+FV GL + + E+ +YF ++G++ + I N S A+VT+ +
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 71 VDDLLAAGD-HYIGNKKI 87
+ + + + +
Sbjct: 69 ALRAIQCVNNVVVDGRTL 86
Score = 36.7 bits (84), Expect = 3e-04
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 100 KCKIFVGGLTTEISEQDVR---DYFSQYGSITEFQQPFDKSKN---MKKGFCFISFDDQN 153
K +FV GL+ +++ +V +YF ++G I + S ++++
Sbjct: 8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE 67
Query: 154 VAEQVLANPKQVICGKEVDVKRVK 177
A + + + VD + +K
Sbjct: 68 DALRAIQC----VNNVVVDGRTLK 87
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 38.2 bits (88), Expect = 1e-04
Identities = 7/81 (8%), Positives = 16/81 (19%), Gaps = 11/81 (13%)
Query: 12 GRNDERKLFVGGLH-----RNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFT 66
G + L + + + F Y + + + F+
Sbjct: 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFS 54
Query: 67 TQKAVDDLLAAGDHYIGNKKI 87
+ D K
Sbjct: 55 NPLSAADARLRLHKTEFLGKE 75
Score = 32.8 bits (74), Expect = 0.009
Identities = 8/66 (12%), Positives = 14/66 (21%), Gaps = 11/66 (16%)
Query: 101 CKIFVGGLTTEI-----SEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155
+ ++ + F Y T FQ I+F + A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY------FKSFKRVRINFSNPLSA 59
Query: 156 EQVLAN 161
Sbjct: 60 ADARLR 65
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 36.6 bits (84), Expect = 4e-04
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA-- 160
+ GGL +S + + G + K + F + +++
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLM------PPNKPYSFARYRTTEESKRAYVTL 76
Query: 161 NPKQVI--CGKEVDVK 174
N K+V+ G+++ +
Sbjct: 77 NGKEVVDDLGQKITLY 92
Score = 32.4 bits (73), Expect = 0.012
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTT----QKAVDDL 74
+ GGL ++ + G V+++ + + ++F + T ++A L
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYVTL 76
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 35.7 bits (82), Expect = 8e-04
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP-KQVICGKEVD 172
+D+R S++G I + G +SF D A+ + + G+++
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
Query: 173 VK 174
+
Sbjct: 89 AQ 90
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 30 EKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAGD-HYIGNKKI 87
+++ S++G++ + + + G A V+F + D + D + G ++I
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTLDGRWFGGRQI 87
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.1 bits (80), Expect = 0.001
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
I V L + + Q+V D Y + K F++ + A+ +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 161 N-PKQVICGKEVDVKRVK 177
+ GK++ V+
Sbjct: 59 MFHQYSFRGKDLIVQLQP 76
Score = 33.2 bits (75), Expect = 0.006
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAV 71
G + + V L +++ +E++D Y + +++ AFVT +
Sbjct: 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDYDLK-------YCYVDRNKRTAFVTLLNGEQA 53
Query: 72 DDLLAAGDHY-IGNKKI 87
+ + Y K +
Sbjct: 54 QNAIQMFHQYSFRGKDL 70
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 35.1 bits (80), Expect = 0.001
Identities = 13/94 (13%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 5 ANGTAG--PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAF 62
++G++G P R + ++ V GL + +++ D+ + Q G
Sbjct: 2 SSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGM 54
Query: 63 VTFTTQKAVDDLLAAGDHY-IGNKKIDPKRVTKR 95
V + ++ ++ L D + + + +
Sbjct: 55 VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY 88
Score = 34.0 bits (77), Expect = 0.004
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 101 CKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLA 160
++ V GL S QD++D+ + + K G + + + E L
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKEDMEYALR 68
Query: 161 N-PKQVICGKEVDVKRVKFNPE-TMGSVSG 188
E + ++ PE + G SG
Sbjct: 69 KLDDTKFRSHEGETSYIRVYPERSSGPSSG 98
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 34.1 bits (77), Expect = 0.002
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 97 NPLKCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAE 156
P +F+ L E +E + F+Q+ E + + F+ F + +
Sbjct: 5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP-----NRHDIAFVEFTTELQSN 59
Query: 157 QVLA--NPKQVICGKEVDVKRVK 177
++ + + K
Sbjct: 60 AAKEALQGFKITPTHAMKITFAK 82
Score = 29.4 bits (65), Expect = 0.12
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLA 76
+ LF+ L T E ++ F+Q+ K AFV FTT+ +
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQF-----PGFKEVRLVPNRHDIAFVEFTTELQSNAAKE 63
Query: 77 AGDHY--IGNKKI 87
A + +
Sbjct: 64 ALQGFKITPTHAM 76
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 33.9 bits (77), Expect = 0.003
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 12 GRNDE-RKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQK 69
GR + R + + R ++ +G + + I N + AF+ T +
Sbjct: 3 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMATTE 56
Query: 70 AVDDLLAAGD---HYIGNKKI 87
+ + K +
Sbjct: 57 DAQAAVDYYTTTPALVFGKPV 77
Score = 31.2 bits (70), Expect = 0.025
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 10/75 (13%)
Query: 103 IFVGGLTT-EISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN---VAEQV 158
+ + + + +G I+ K FI A
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLI------LNKINEAFIEMATTEDAQAAVDY 64
Query: 159 LANPKQVICGKEVDV 173
++ GK V V
Sbjct: 65 YTTTPALVFGKPVRV 79
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 33.7 bits (76), Expect = 0.003
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162
I + GL +++ Q+V D S Y + + KG F++ + AE +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 163 KQVIC-GKEVDVK 174
Q +E+ V+
Sbjct: 54 HQSRLRERELSVQ 66
Score = 32.6 bits (73), Expect = 0.007
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFTTQKAVDDLLAAG 78
+ + GL + +E++D S Y + +G AFVT + + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 79 DHYIGNKKIDPKRVTKRVNPLKC 101
++ ++ + L C
Sbjct: 54 HQSRLRERELSVQLQPT-DALLC 75
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 33.7 bits (76), Expect = 0.004
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
++ V GL S QD++D+ + D ++ F+ +D A + L N
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDN 57
Query: 162 PKQVICGKEVDVKRVKFNPET 182
E + ++ +
Sbjct: 58 --TKFRSHEGETAYIRVKVDG 76
Score = 27.5 bits (60), Expect = 0.47
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQY 40
++ V GL + +++ D+ +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA 24
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.3 bits (73), Expect = 0.015
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 5 ANGTAGPGRND-ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQ 56
++G G G+ + +L+VGGL NT + F ++G + +I
Sbjct: 5 SSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAY 57
Score = 31.2 bits (70), Expect = 0.030
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLAN 161
+++VGGL S + F ++ F +I ++ + A+ A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRF------GSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72
Query: 162 -PKQVICGKEVDVKRVKF 178
+ G + + RV F
Sbjct: 73 MRGFPLGGPDRRL-RVDF 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.5 bits (68), Expect = 0.071
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 103 IFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVLANP 162
+ V GL + E D+ + ++G+I K + F++ + A++ +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMM------MPFKRQALVEFENIDSAKECVTFA 71
Query: 163 KQVICGKEVDVKRVKFN 179
V + ++ FN
Sbjct: 72 ADV--PVYIAGQQAFFN 86
Score = 29.8 bits (66), Expect = 0.10
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 5 ANGTAGPGRNDE--RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAF 62
++G++G + V GL + E ++ + ++G + + + A
Sbjct: 2 SSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QAL 55
Query: 63 VTFTT----QKAVDDLLAAGDHYIGNKKI 87
V F ++ V YI ++
Sbjct: 56 VEFENIDSAKECVTFAADVP-VYIAGQQA 83
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.5 bits (65), Expect = 0.18
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 100 KCKIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL 159
K I L ++++ FS++GS+ P + F+ + A + L
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRHL 66
Query: 160 ANPKQVICGKEVDVKRVKFNPET 182
A + ++
Sbjct: 67 AY--SKFHHVPLYLEWAPIGVFG 87
Score = 27.2 bits (59), Expect = 1.1
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPHTGQSRGFAFVTFT 66
G++G + + L T EI + FS++ + +
Sbjct: 1 GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEGGITAIVEFLEPLE 58
Query: 67 TQKAVDDL 74
+KA L
Sbjct: 59 ARKAFRHL 66
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.7 bits (58), Expect = 1.0
Identities = 7/76 (9%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 102 KIFVGGLTTEISEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAEQVL-- 159
+ + L E++E +V + + + K F+ + A ++
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 160 -ANPKQVICGKEVDVK 174
+ + + + ++
Sbjct: 64 YSAVTPHLRNQPIYIQ 79
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 316
Score = 28.0 bits (61), Expect = 1.2
Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 110 TEISEQDVRDYFSQY--GSITEFQQ 132
T+I+E ++R++ +QY GS+T ++
Sbjct: 1 TDITEDELRNFLTQYDVGSLTSYKG 25
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 89
Score = 25.0 bits (55), Expect = 3.6
Identities = 2/21 (9%), Positives = 6/21 (28%)
Query: 228 YTAGSYDAYATAYPGYDYSAM 248
Y+ + G ++
Sbjct: 61 NRQKDYEGSTFTFIGLSLYSL 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,024,760
Number of extensions: 46867
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 170
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)