BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13140
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 151 bits (382), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 84/116 (72%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ REDCP D+++LG TW LHT+AAYYP+ PT +++++M F + KFYPCE CA D
Sbjct: 24 KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 83
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
+ P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 84 RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 139
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 84/116 (72%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ REDCP D+++LG TW LHT+AAYYP+ PT +++++M F + KFYPCE CA D
Sbjct: 10 KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 69
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
+ P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 70 RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 125
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYPCE CA D
Sbjct: 24 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 83
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 84 RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 139
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYPCE CA D
Sbjct: 10 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 69
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 70 RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 125
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 146 bits (368), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 82/116 (70%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYP E CA D
Sbjct: 11 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDL 70
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 71 RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 126
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 144 bits (364), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 81/115 (70%)
Query: 8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFS 67
REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYP E CA D
Sbjct: 1 FREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLR 60
Query: 68 SLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 61 KRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 115
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 80/115 (69%)
Query: 8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFS 67
REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYP E A D
Sbjct: 1 FREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLR 60
Query: 68 SLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 61 KRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 115
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 76/116 (65%)
Query: 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
+ RED P D+++LG +W +LHT+AAYYP+ PT +++++ F L KFYP E A D
Sbjct: 11 KFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDL 70
Query: 67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
L P T ++ A WL +HN +N+KLGKP FD S++DERWRDGW DGS D
Sbjct: 71 RKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD 126
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 68/105 (64%)
Query: 14 LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
+D +QLG +W LLH++AA YP +PT ++ EMK F + YPC CA+DF ++
Sbjct: 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIREN 61
Query: 74 PPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
P S+ L W+C HN +N+KL KP+FDC+ ++RW+DGWD+
Sbjct: 62 APQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 106
>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
Length = 189
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 9 REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
R+ P D +QLG +W LLH++AA YP +PT ++ EMK F + YPC A+DF
Sbjct: 80 RKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEK 139
Query: 69 LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
++ P S+ L W+C HN +N+KL KP+FDC+ ++RW+DGWD+
Sbjct: 140 YIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 61/100 (61%)
Query: 13 PLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL 72
P+ K+ LG TW LHT+AA YPEKPT +++++K +L + YPC CA F +L+
Sbjct: 7 PVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRS 66
Query: 73 RPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERW 112
P SQ + WLC VHN +N+ LGK F C R+D RW
Sbjct: 67 NPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 106
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 16 KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPP 75
K ++G +W HT+ A +P++PT +E ++ TF L + YPC C+ F L++ P
Sbjct: 8 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 67
Query: 76 ATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
TSS+ A A W C +HN +N+ L K +DC+ + E + G D
Sbjct: 68 QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 110
>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From
Mimivirus Sulfhydryl Oxidase R596
pdb|3GWN|B Chain B, Crystal Structure Of The Fad Binding Domain From
Mimivirus Sulfhydryl Oxidase R596
Length = 114
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 20 GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
G W H + YP PT+D++R K +F+ LG PC C + + A ++
Sbjct: 10 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 69
Query: 80 Q-----RALAGWLCWVHNHINQKL 98
+ L W VHN +N KL
Sbjct: 70 EVLRNRHTLTKWFYDVHNAVNNKL 93
>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596
Length = 295
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 20 GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
G W H + YP PT+D++R K +F+ LG PC C + + A ++
Sbjct: 44 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 103
Query: 80 Q-----RALAGWLCWVHNHINQKL 98
+ L W VHN +N KL
Sbjct: 104 EVLRNRHTLTKWFYDVHNAVNNKL 127
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 20 GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
G + W LH A ++ + P+ E+ E + + + PC C S L P ++
Sbjct: 8 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67
Query: 80 QRALAGWLCWVHNHINQKLGK 100
W HN++N +L K
Sbjct: 68 SEDFQYWTFAFHNNVNNRLNK 88
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 30 IAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC 88
+AA T DEE E+K +L K+ + A + + +K PP Q L C
Sbjct: 51 LAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFC 109
>pdb|3E0S|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
pdb|3E0S|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
Length = 326
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 3 SSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESC 62
+ L +R DC +L Y LL A+ +P K TA R+MKT LG F
Sbjct: 201 AELHELRIDCK----KLRY----LLEFFASLFPPKATAQVLRQMKTLQDNLGTFVDLTVQ 252
Query: 63 ARDFSSLLKLRPP---ATSSQRALAGWLCWVH 91
S L+ P S A+ G L ++
Sbjct: 253 MEFLQSRLETIPADRGGISEAAAIGGLLTTLY 284
>pdb|3LLI|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|A Chain A, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|B Chain B, Sulfhydryl Oxidase Fragment Of Human Qsox1
pdb|3LLK|C Chain C, Sulfhydryl Oxidase Fragment Of Human Qsox1
Length = 261
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 56 FYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKL-GKPQFD 104
F+ C CA F + S A WL HN +N +L G P D
Sbjct: 161 FFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSED 210
>pdb|1Z6O|M Chain M, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|N Chain N, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|O Chain O, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|P Chain P, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|Q Chain Q, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|R Chain R, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|S Chain S, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|T Chain T, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|U Chain U, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|V Chain V, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|W Chain W, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|X Chain X, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
Length = 191
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 39 TADEERE--MKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
A EERE MK LL + D SSLL++RPP SS
Sbjct: 63 AASEEREHAMKLIEYLLMR----GELTNDVSSLLQVRPPTRSS 101
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 34 YPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
+P+ + + E+E K F L G++ E+ +++ L+
Sbjct: 763 FPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLK 802
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 34 YPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
+P+ + + E+E K F L G++ E+ +++ L+
Sbjct: 763 FPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLK 802
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 34 YPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
+P+ + + E+E K F L G++ E+ +++ L+
Sbjct: 752 FPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLK 791
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 24 WGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARD 65
+G L I+ Y P +A+E +++K + L FYP ++
Sbjct: 100 FGRLSVISLYLPSGSSAEERQQVK--YRFLDAFYPMLEAMKN 139
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
pdb|4B5F|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 1)
pdb|4B5G|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|B Chain B, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|C Chain C, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5I|A Chain A, Product Complex Of Neisseria Ap Endonuclease In Presence
Of Metal Ions
pdb|4B5J|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With An
Orphan Adenine Base
pdb|4B5M|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|B Chain B, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|C Chain C, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
Length = 259
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 24 WGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYP 58
+G L I+ Y P +A+E +++K + L FYP
Sbjct: 100 FGRLSVISLYLPSGSSAEERQQVK--YRFLDAFYP 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,073,590
Number of Sequences: 62578
Number of extensions: 148598
Number of successful extensions: 275
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 29
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)