Query psy13140
Match_columns 122
No_of_seqs 105 out of 532
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:36:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5s_A FAD-linked sulfhydryl o 100.0 4.4E-53 1.5E-57 299.3 13.7 115 8-122 12-126 (126)
2 2hj3_A Sulfhydryl oxidase ERV1 100.0 6.8E-52 2.3E-56 292.9 11.7 115 8-122 2-117 (125)
3 1jr8_A ERV2 protein, mitochond 100.0 4.4E-49 1.5E-53 275.7 10.3 110 11-120 3-112 (117)
4 4e0h_A Mitochondrial FAD-linke 100.0 3.7E-47 1.3E-51 261.5 12.4 105 14-118 2-106 (106)
5 4e0i_A Mitochondrial FAD-linke 100.0 1.3E-46 4.6E-51 281.7 13.8 112 7-118 78-189 (189)
6 3gwl_A P14, FAD-linked sulfhyd 100.0 1.3E-43 4.4E-48 244.1 11.4 98 17-114 5-102 (106)
7 3gwn_A Probable FAD-linked sul 100.0 1.5E-43 5.1E-48 246.5 8.5 103 12-114 2-110 (114)
8 3td7_A FAD-linked sulfhydryl o 100.0 1.1E-32 3.6E-37 216.4 9.2 103 11-113 35-143 (295)
9 3t58_A Sulfhydryl oxidase 1; o 99.9 6.7E-27 2.3E-31 196.0 3.7 102 10-111 363-478 (519)
10 3llk_A Sulfhydryl oxidase 1; d 99.9 4.3E-25 1.5E-29 172.1 8.1 101 10-113 106-223 (261)
11 3qcp_A QSOX from trypanosoma b 99.9 3.1E-24 1E-28 178.6 3.3 86 17-113 298-389 (470)
12 3p0k_A Sulfhydryl oxidase; 4-h 69.2 8.1 0.00028 29.7 5.1 47 22-68 109-165 (266)
13 2lvu_A Zinc finger and BTB dom 57.9 2.9 0.0001 18.7 0.0 13 57-69 3-15 (26)
14 2lvt_A Zinc finger and BTB dom 49.8 4.8 0.00017 18.3 0.0 14 57-70 3-16 (29)
15 2lvr_A Zinc finger and BTB dom 47.0 5.7 0.0002 18.0 0.0 14 56-69 3-16 (30)
16 3vow_A Probable DNA DC->DU-edi 34.0 23 0.00078 25.9 2.3 19 57-75 95-113 (190)
17 3v4k_A DNA DC->DU-editing enzy 32.5 21 0.00073 26.3 1.9 19 57-75 109-127 (203)
18 2kfq_A FP1; protein, de novo p 31.3 6.8 0.00023 18.6 -0.7 14 57-70 3-16 (32)
19 2ajj_A NS5A, nonstructural pro 22.8 37 0.0013 17.2 1.2 17 84-100 6-22 (28)
20 1ard_A Yeast transcription fac 22.0 5.5 0.00019 17.9 -2.1 10 57-66 3-12 (29)
21 1znf_A 31ST zinc finger from X 21.2 4.8 0.00016 17.9 -2.4 10 57-66 2-11 (27)
No 1
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=100.00 E-value=4.4e-53 Score=299.28 Aligned_cols=115 Identities=50% Similarity=1.015 Sum_probs=113.2
Q ss_pred CCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy13140 8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWL 87 (122)
Q Consensus 8 ~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl 87 (122)
.+++||+|+++||||+|++|||||++||++|+.+++..|+.||.+|..+|||.+|+.||.++++++|++++||++|++||
T Consensus 12 ~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~~Wl 91 (126)
T 3u5s_A 12 FREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFTQWL 91 (126)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred ccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhCCCCCCccchHhhhcCCCCCCCCC
Q psy13140 88 CWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122 (122)
Q Consensus 88 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~~~ 122 (122)
|.+||.||++||||+|||+.|.+||++||.||+||
T Consensus 92 ~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~~d 126 (126)
T 3u5s_A 92 XHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD 126 (126)
T ss_dssp HHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTSTTC
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCCCC
Confidence 99999999999999999999999999999999998
No 2
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=6.8e-52 Score=292.85 Aligned_cols=115 Identities=42% Similarity=0.882 Sum_probs=100.4
Q ss_pred CCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy13140 8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWL 87 (122)
Q Consensus 8 ~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl 87 (122)
+|.+||+++++||+++|+||||||++||++|+.++++++..||++|..||||.+||.||.++++++|++|+||+++++||
T Consensus 2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL 81 (125)
T 2hj3_A 2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL 81 (125)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhCCCCCCccchHhhhcCCCCC-CCCC
Q psy13140 88 CWVHNHINQKLGKPQFDCSRLDERWRDGWDD-GSCD 122 (122)
Q Consensus 88 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~-~~~~ 122 (122)
|++||.||+|||||+|||+.|.+||++||.| |+||
T Consensus 82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~ 117 (125)
T 2hj3_A 82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD 117 (125)
T ss_dssp HHHHHHHHHHTTCCCCCTTSHHHHCC----------
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcC
Confidence 9999999999999999999999999999999 9997
No 3
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=100.00 E-value=4.4e-49 Score=275.67 Aligned_cols=110 Identities=34% Similarity=0.685 Sum_probs=104.3
Q ss_pred CCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy13140 11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWV 90 (122)
Q Consensus 11 ~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~ 90 (122)
.||+++++||+|+|+||||||++||++|+.++++.+..|+.+|.+||||.+|+.||.++++++|++|+||+++++|||++
T Consensus 3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~ 82 (117)
T 1jr8_A 3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI 82 (117)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhCCCCCCccchHhhhcCCCCCCC
Q psy13140 91 HNHINQKLGKPQFDCSRLDERWRDGWDDGS 120 (122)
Q Consensus 91 HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~ 120 (122)
||.||+|||||+|||+.|.|||++||+|+.
T Consensus 83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~~ 112 (117)
T 1jr8_A 83 HNKVNEYLKKDIYDCATILEDYDCGCSDSD 112 (117)
T ss_dssp HHHHHHHTTCCCCCCTTHHHHTCCCC----
T ss_pred HHHHHHHhCCCCcCHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999998864
No 4
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-47 Score=261.48 Aligned_cols=105 Identities=44% Similarity=1.022 Sum_probs=102.7
Q ss_pred CCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhH
Q psy13140 14 LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNH 93 (122)
Q Consensus 14 ~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~ 93 (122)
+|+++|||++|++|||||++||++|+.+++..++.||.+|..+|||++||.||.++++++|+.++||+++++|||.+||.
T Consensus 2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~ 81 (106)
T 4e0h_A 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK 81 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCccchHhhhcCCCCC
Q psy13140 94 INQKLGKPQFDCSRLDERWRDGWDD 118 (122)
Q Consensus 94 VN~rLgKp~~~c~~~~~rw~~g~~~ 118 (122)
||+|||||+|||+.+.+||++||+|
T Consensus 82 VN~rLgKp~f~~~~~~~ry~~g~~d 106 (106)
T 4e0h_A 82 VNKKLRKPKFDCNFWEKRWKDGWDE 106 (106)
T ss_dssp HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999987
No 5
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=281.70 Aligned_cols=112 Identities=42% Similarity=0.929 Sum_probs=108.9
Q ss_pred CCCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHH
Q psy13140 7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGW 86 (122)
Q Consensus 7 ~~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~W 86 (122)
+.+++||+|+++|||++|++|||||++||++|+.++++.|+.||.+|..+|||++|+.||.++++.+|+.++||++|++|
T Consensus 78 ~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~~W 157 (189)
T 4e0i_A 78 TYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELGRW 157 (189)
T ss_dssp SCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHH
T ss_pred CCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHhhhCCCCCCccchHhhhcCCCCC
Q psy13140 87 LCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118 (122)
Q Consensus 87 l~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~ 118 (122)
||++||.||++||||+|||+.|.+||++||+|
T Consensus 158 l~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d 189 (189)
T 4e0i_A 158 MCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189 (189)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999987
No 6
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=100.00 E-value=1.3e-43 Score=244.15 Aligned_cols=98 Identities=21% Similarity=0.412 Sum_probs=95.4
Q ss_pred cccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHHh
Q psy13140 17 DQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQ 96 (122)
Q Consensus 17 ~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~ 96 (122)
.+||||+|++|||||++||++|+.+++++++.||++|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus 5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~ 84 (106)
T 3gwl_A 5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCccchHhhhcC
Q psy13140 97 KLGKPQFDCSRLDERWRD 114 (122)
Q Consensus 97 rLgKp~~~c~~~~~rw~~ 114 (122)
|||||+|||++|.+||+-
T Consensus 85 rLgKp~fdc~~~~e~y~~ 102 (106)
T 3gwl_A 85 RLNKKIISWSEYKNIYEQ 102 (106)
T ss_dssp HTTCCCCCHHHHHHHHTT
T ss_pred hhCCCCCCHHHHHHHHHH
Confidence 999999999999999974
No 7
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.5e-43 Score=246.55 Aligned_cols=103 Identities=24% Similarity=0.529 Sum_probs=99.0
Q ss_pred CCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCC----CC-CCCHHHHHHH
Q psy13140 12 CPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP----PA-TSSQRALAGW 86 (122)
Q Consensus 12 ~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p----~~-v~sr~~l~~W 86 (122)
-++++++||||+|++|||||++||++|+.+++++|+.||++|.++|||.+|+.||.++++++| ++ |+||+++++|
T Consensus 2 ~g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~W 81 (114)
T 3gwn_A 2 NGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKW 81 (114)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHH
T ss_pred CCCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999999 88 9999999999
Q ss_pred HHHHhhHHHhhhCCCC-CCccchHhhhcC
Q psy13140 87 LCWVHNHINQKLGKPQ-FDCSRLDERWRD 114 (122)
Q Consensus 87 l~~~HN~VN~rLgKp~-~~c~~~~~rw~~ 114 (122)
||++||.||+|||||+ ++|++|.+||+.
T Consensus 82 lc~~HN~VN~rLgKp~~~~~~~v~ery~~ 110 (114)
T 3gwn_A 82 FYDVHNAVNNKLEVDYGLSYEDVVNKYES 110 (114)
T ss_dssp HHHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred HHHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence 9999999999999996 789999999974
No 8
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=99.98 E-value=1.1e-32 Score=216.36 Aligned_cols=103 Identities=24% Similarity=0.530 Sum_probs=93.9
Q ss_pred CCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCC-----CCCCCHHHHHH
Q psy13140 11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP-----PATSSQRALAG 85 (122)
Q Consensus 11 ~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-----~~v~sr~~l~~ 85 (122)
......+.|||++|++|||+|++||++|+.++++.++.||.+|..+|||++||.||.++++++| +.++||++|+.
T Consensus 35 ~dGM~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLsk 114 (295)
T 3td7_A 35 HNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTK 114 (295)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHH
T ss_pred CCCCccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHH
Confidence 3445677899999999999999999999999999999999999999999999999999999887 34789999999
Q ss_pred HHHHHhhHHHhhhCCCC-CCccchHhhhc
Q psy13140 86 WLCWVHNHINQKLGKPQ-FDCSRLDERWR 113 (122)
Q Consensus 86 Wl~~~HN~VN~rLgKp~-~~c~~~~~rw~ 113 (122)
|+|.+||.||++||||. +.++++.++|.
T Consensus 115 WL~~iHN~VNkrLGKP~~lSYedv~kkYE 143 (295)
T 3td7_A 115 WFYDVHNAVNNKLEVDYGLSYEDVVNKYE 143 (295)
T ss_dssp HHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999999999999996 77778776664
No 9
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.93 E-value=6.7e-27 Score=195.99 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=82.9
Q ss_pred CCCCCCc---cccchhhhHHHHHHhhhcCCCCCh------HHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCH
Q psy13140 10 EDCPLDK---DQLGYQTWGLLHTIAAYYPEKPTA------DEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQ 80 (122)
Q Consensus 10 ~~~p~~~---~~~G~alW~llHtla~~~p~~ps~------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr 80 (122)
-+|--++ ..+-+++|+|||||||+||++|+. .++..+..|...+..||||.+|+.||.+++++++++|+||
T Consensus 363 ~~C~gs~~~~rg~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~~v~s~ 442 (519)
T 3t58_A 363 VGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQVRSP 442 (519)
T ss_dssp STTBCSSTTSBSHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGGGCCSH
T ss_pred ccCCCCCcccCCcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCCcCCCH
Confidence 4554443 456789999999999999988754 3455666666656688999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhh-----CCCCCCccchHhh
Q psy13140 81 RALAGWLCWVHNHINQKL-----GKPQFDCSRLDER 111 (122)
Q Consensus 81 ~~l~~Wl~~~HN~VN~rL-----gKp~~~c~~~~~r 111 (122)
+++++|||++||.||+|| ++|.|++..+.-+
T Consensus 443 ~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~P~~ 478 (519)
T 3t58_A 443 SNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPR 478 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSSSCT
T ss_pred HHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCCCCc
Confidence 999999999999999999 5567776655433
No 10
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=99.91 E-value=4.3e-25 Score=172.06 Aligned_cols=101 Identities=21% Similarity=0.390 Sum_probs=78.0
Q ss_pred CCCCCCc---cccchhhhHHHHHHhhhcCCCCCh---------HHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCC
Q psy13140 10 EDCPLDK---DQLGYQTWGLLHTIAAYYPEKPTA---------DEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPAT 77 (122)
Q Consensus 10 ~~~p~~~---~~~G~alW~llHtla~~~p~~ps~---------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v 77 (122)
-+|--+. ..+-+++|+|||+||++++++|.. +..++|+.||+. ||||++|+.||.+++++++++|
T Consensus 106 vgC~GS~p~~RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~~~~~v 182 (261)
T 3llk_A 106 IGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAASMHRV 182 (261)
T ss_dssp STTCCSSTTSSSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHGGGC
T ss_pred cccCCCCCccCCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCcc
Confidence 3454433 456679999999999998877532 233556666664 5999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhHHHhhhC-----CCCCCccchHhhhc
Q psy13140 78 SSQRALAGWLCWVHNHINQKLG-----KPQFDCSRLDERWR 113 (122)
Q Consensus 78 ~sr~~l~~Wl~~~HN~VN~rLg-----Kp~~~c~~~~~rw~ 113 (122)
+|++++++|||++||.||+||+ .|.|++..+..+..
T Consensus 183 ~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qwP~~~~ 223 (261)
T 3llk_A 183 GSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPREL 223 (261)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSSSCTTT
T ss_pred CCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCCCCchh
Confidence 9999999999999999999994 56777755544433
No 11
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.89 E-value=3.1e-24 Score=178.65 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=70.8
Q ss_pred cccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHHh
Q psy13140 17 DQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQ 96 (122)
Q Consensus 17 ~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~ 96 (122)
..+-+++|+|||||||+||+ ++..+..|...+.+||||.+|+.||.+++ +++++++++|||++||.||+
T Consensus 298 rg~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~lWlw~~HN~VN~ 366 (470)
T 3qcp_A 298 RGFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPVLQLWRAHNNVNA 366 (470)
T ss_dssp SSHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHHHHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHHHHHHHHhCHHHH
Confidence 34667999999999999998 24455565555667899999999999876 78999999999999999999
Q ss_pred hhCC------CCCCccchHhhhc
Q psy13140 97 KLGK------PQFDCSRLDERWR 113 (122)
Q Consensus 97 rLgK------p~~~c~~~~~rw~ 113 (122)
||+| |.|||..+.-...
T Consensus 367 rL~~~~~~~dp~fpk~~~P~~~~ 389 (470)
T 3qcp_A 367 RLANVKDGADPLVPKRQFPTLEA 389 (470)
T ss_dssp HHTTCCTTSCTTSCCCCSSCTTT
T ss_pred hcCCCCCCCCCCCCccCCCCchh
Confidence 9997 7788876654443
No 12
>3p0k_A Sulfhydryl oxidase; 4-helix bundle, 5-helix bundle, flavin adenine dinucleotide, oxidoreductase, viral protein; HET: FAD; 1.47A {Autographa californica nucleopolyhedro} PDB: 3qzy_A* 3ust_A*
Probab=69.21 E-value=8.1 Score=29.70 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=31.8
Q ss_pred hhhHHHHHHhhhc------CCCCChH----HHHHHHHHHHHhhhhcCChhhHHHHHH
Q psy13140 22 QTWGLLHTIAAYY------PEKPTAD----EEREMKTFFMLLGKFYPCESCARDFSS 68 (122)
Q Consensus 22 alW~llHtla~~~------p~~ps~~----~~~~~~~fi~~f~~~~PC~~C~~hf~~ 68 (122)
-.|=.+|.++.-. -++-+-+ ..+.++..+.++-..+-|+.||+|+..
T Consensus 109 TIWD~IHfL~li~DDmV~nR~k~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 165 (266)
T 3p0k_A 109 TIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 165 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHCCCCSSCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHHHHHHHhhHhheeCChHHhHHHEe
Confidence 5899999999643 2232322 335666666666566789999999754
No 13
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=57.89 E-value=2.9 Score=18.69 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.6
Q ss_pred cCChhhHHHHHHH
Q psy13140 57 YPCESCARDFSSL 69 (122)
Q Consensus 57 ~PC~~C~~hf~~~ 69 (122)
|.|++|.+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6799999988654
No 14
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=49.84 E-value=4.8 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=10.8
Q ss_pred cCChhhHHHHHHHH
Q psy13140 57 YPCESCARDFSSLL 70 (122)
Q Consensus 57 ~PC~~C~~hf~~~~ 70 (122)
|.|+.|.+.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 67999999886543
No 15
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=46.98 E-value=5.7 Score=17.96 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=10.9
Q ss_pred hcCChhhHHHHHHH
Q psy13140 56 FYPCESCARDFSSL 69 (122)
Q Consensus 56 ~~PC~~C~~hf~~~ 69 (122)
-|.|..|...|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 37799999988654
No 16
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=34.04 E-value=23 Score=25.88 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=16.8
Q ss_pred cCChhhHHHHHHHHHhCCC
Q psy13140 57 YPCESCARDFSSLLKLRPP 75 (122)
Q Consensus 57 ~PC~~C~~hf~~~~~~~p~ 75 (122)
=||.+|+....+++.+++.
T Consensus 95 SPC~~CA~~va~FL~~~~~ 113 (190)
T 3vow_A 95 SPCPDCAGEVAEFLARHSN 113 (190)
T ss_dssp CCCHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHhCCC
Confidence 4999999999999998873
No 17
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=32.52 E-value=21 Score=26.30 Aligned_cols=19 Identities=26% Similarity=0.663 Sum_probs=16.7
Q ss_pred cCChhhHHHHHHHHHhCCC
Q psy13140 57 YPCESCARDFSSLLKLRPP 75 (122)
Q Consensus 57 ~PC~~C~~hf~~~~~~~p~ 75 (122)
=||.+|+....+++..+|.
T Consensus 109 SPC~~CA~~v~~FL~~~~~ 127 (203)
T 3v4k_A 109 SPCFSCAQEMAKFISKNKH 127 (203)
T ss_pred CChHHHHHHHHHHHhhCCC
Confidence 4899999999999998773
No 18
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=31.34 E-value=6.8 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.738 Sum_probs=11.5
Q ss_pred cCChhhHHHHHHHH
Q psy13140 57 YPCESCARDFSSLL 70 (122)
Q Consensus 57 ~PC~~C~~hf~~~~ 70 (122)
|.|++|.+.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 3 FACPACPKRFMRSD 16 (32)
T ss_dssp SSSSSSCTTHHHHH
T ss_pred CCCCCCCcccCCHH
Confidence 78999999987655
No 19
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=22.80 E-value=37 Score=17.24 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHHhhhCC
Q psy13140 84 AGWLCWVHNHINQKLGK 100 (122)
Q Consensus 84 ~~Wl~~~HN~VN~rLgK 100 (122)
..-+.++|+.+|..+.|
T Consensus 6 LdLl~~lh~~~~~~ikk 22 (28)
T 2ajj_A 6 LDLIYSLHKQINRGLKK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34578999999987644
No 20
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.02 E-value=5.5 Score=17.87 Aligned_cols=10 Identities=50% Similarity=1.361 Sum_probs=7.0
Q ss_pred cCChhhHHHH
Q psy13140 57 YPCESCARDF 66 (122)
Q Consensus 57 ~PC~~C~~hf 66 (122)
|.|+.|...|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6788887654
No 21
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.16 E-value=4.8 Score=17.86 Aligned_cols=10 Identities=50% Similarity=1.315 Sum_probs=6.7
Q ss_pred cCChhhHHHH
Q psy13140 57 YPCESCARDF 66 (122)
Q Consensus 57 ~PC~~C~~hf 66 (122)
|.|..|.+.|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5677776654
Done!