RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13140
(122 letters)
>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the
biogenesis of cytosolic Fe/S proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 181
Score = 124 bits (313), Expect = 2e-37
Identities = 46/104 (44%), Positives = 65/104 (62%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP 74
D ++LG +W LLHT+AA YP +PT + ++++F L YPC C++ F LL + P
Sbjct: 78 DVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP 137
Query: 75 PATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
P SS+ A W C VHN +N+KLGKP+FDC +ER+ G D
Sbjct: 138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181
>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family. Biogenesis of Fe/S
clusters involves a number of essential mitochondrial
proteins. Erv1p of Saccharomyces cerevisiae mitochondria
is required for the maturation of Fe/S proteins in the
cytosol. The ALR (augmenter of liver regeneration)
represents a mammalian orthologue of yeast Erv1p. Both
Erv1p and full-length ALR are located in the
mitochondrial intermembrane an d it thought to operate
downstream of the mitochondrial ABC transporter.
Length = 95
Score = 115 bits (291), Expect = 4e-35
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 23 TWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRA 82
W LLHT+AA YP+ PT +E+ +K+F FYPCE CA F +L PP SS+
Sbjct: 3 LWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRDD 62
Query: 83 LAGWLCWVHNHINQKLGKPQF-DCSRLDERWRD 114
L+ WLC HN +N +LGKP F ++ ER+ D
Sbjct: 63 LSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
mitogen-activated protein kinase (MAPK), kinase kinase
kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in
some MAPK signaling pathways by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an
effector of Rap2, a small GTP-binding protein from the
Ras family. TNIK specifically activates the c-Jun
N-terminal kinase (JNK) pathway and plays a role in
regulating the actin cytoskeleton.
Length = 272
Score = 27.8 bits (61), Expect = 1.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 39 TADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC 88
T DEE E+K +L K+ + A + + +K PP Q L C
Sbjct: 42 TGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFC 91
>gnl|CDD|236613 PRK09693, PRK09693, Cascade antiviral complex protein; Validated.
Length = 489
Score = 27.4 bits (61), Expect = 1.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 4 SLDRIREDCPLDKDQLGYQTW 24
+ DR++ PL TW
Sbjct: 191 TEDRLQTFFPLWSHTESQPTW 211
>gnl|CDD|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 885
Score = 26.5 bits (58), Expect = 4.6
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 16 KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGK 55
D L + + + + +++ KT LL +
Sbjct: 741 SDLLFLNQIMICVRLNSIFESLDNVSQDKTRKTLVSLLER 780
>gnl|CDD|220583 pfam10118, Metal_hydrol, Predicted metal-dependent hydrolase.
Members of this family of proteins comprise various
bacterial transition metal-dependent hydrolases.
Length = 251
Score = 26.0 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 28 HTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCA 63
A Y +P E F LLGK E A
Sbjct: 83 ALEAHGYDVEPY--LEAREWLFLALLGKLPLREQLA 116
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 25.5 bits (57), Expect = 7.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 27 LHTIAAYYPEKPTADEEREMK 47
+ IA Y P KP + RE
Sbjct: 10 ILDIAPYVPGKPIEELVREYG 30
>gnl|CDD|216724 pfam01824, MatK_N, MatK/TrnK amino terminal region. The function
of this region is unknown.
Length = 331
Score = 25.5 bits (56), Expect = 8.5
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 21 YQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
Y W L T P+K + + FF+ L Y CE
Sbjct: 183 YCNWNSLIT-----PKKSIFSFSKRNQRFFLFLYNSYVCE 217
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 25.3 bits (55), Expect = 8.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 39 TADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC 88
T DEE E+K +L K+ + A + + +K PP Q L C
Sbjct: 52 TEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFC 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.467
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,253,936
Number of extensions: 516353
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 15
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)