RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13140
(122 letters)
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET:
FAD; 1.85A {Homo sapiens} PDB: 3r7c_A*
Length = 139
Score = 141 bits (355), Expect = 1e-44
Identities = 63/121 (52%), Positives = 83/121 (68%)
Query: 2 SSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCES 61
+ REDCP D+++LG +W +LHT+AAYYP+ PT +++++M F L KFYPCE
Sbjct: 19 QKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEE 78
Query: 62 CARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
CA D L P T ++ A WLC +HN +N+KLGKP FDCS++DERWRDGW DGSC
Sbjct: 79 CAEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSC 138
Query: 122 D 122
D
Sbjct: 139 D 139
>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase,
helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus
norvegicus} SCOP: a.24.15.1 PDB: 3o55_A*
Length = 125
Score = 137 bits (347), Expect = 1e-43
Identities = 63/122 (51%), Positives = 84/122 (68%)
Query: 1 MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
+ REDCP D+++LG TW LHT+AAYYP+ PT +++++M F + KFYPCE
Sbjct: 4 QQKRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCE 63
Query: 61 SCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGS 120
CA D + P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGS
Sbjct: 64 ECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123
Query: 121 CD 122
CD
Sbjct: 124 CD 125
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical
bundle, CXXC, oxidoreductase; HET: FAD; 1.50A
{Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Length = 117
Score = 125 bits (316), Expect = 7e-39
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 13 PLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL 72
K ++G +W HT+ A +P++PT +E ++ TF L + YPC C+ F L++
Sbjct: 5 DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64
Query: 73 RPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
P TSS+ A A W C +HN +N+ L K +DC+ + E + G D
Sbjct: 65 YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSDG 113
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine
dinucleotide, oxidoreductase; HET: FAD; 2.50A
{Arabidopsis thaliana}
Length = 125
Score = 118 bits (296), Expect = 7e-36
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLL 70
P+ K+ LG TW LHT+AA YPEKPT +++++K +L + YPC CA F +L
Sbjct: 5 TGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEIL 64
Query: 71 KLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERW-RDGWDDGSCD 122
+ P SQ + WLC VHN +N+ LGK F C R+D RW + + SCD
Sbjct: 65 RSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD 117
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle,
cytoplasm, disulfide bond, flavoprotein, late protein;
HET: FAD; 2.10A {African swine fever virus BA71V}
Length = 106
Score = 100 bits (249), Expect = 7e-29
Identities = 21/96 (21%), Positives = 36/96 (37%)
Query: 20 GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
G + W LH A ++ + P+ E+ E + + + PC C S L P ++
Sbjct: 8 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67
Query: 80 QRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDG 115
W HN++N +L K S +
Sbjct: 68 SEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle,
homodimer, disulfide bond, flavoprot oxidoreductase,
virion; HET: FAD; 1.78A {Acanthamoeba polyphaga
mimivirus}
Length = 114
Score = 90.2 bits (223), Expect = 6e-25
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 14 LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLK-- 71
L G W H + YP PT+D++R K +F+ LG PC C + +
Sbjct: 4 LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63
Query: 72 ---LRPPATSSQRALAGWLCWVHNHINQKLGKP-QFDCSRLDERWR 113
L ++ L W VHN +N KL + ++
Sbjct: 64 KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 84.7 bits (209), Expect = 2e-21
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 23 TWGLLHTIAAYYPEKPTADEERE------MKTFFMLLGKFYPCESCARDFSSLLKLRPPA 76
W L H + + + + + F+ C CA F +
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181
Query: 77 TSSQRALAGWLCWVHNHINQKL-GKPQFDCSRLDERW 112
S A WL HN +N +L G P D +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 40.7 bits (94), Expect = 3e-05
Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 23/117 (19%)
Query: 24 WGLLHTIAAYYPEKPTADEEREMKTFFMLLG------KFYPCESCARDFSSLLKLRPPAT 77
W L H + A + +L F+ C A F +
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439
Query: 78 SSQRALAGWLCWVHNHINQKLG----------KPQF-------DCSRLDERWRDGWD 117
S WL HN +N +L K Q+ C WD
Sbjct: 440 RSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPRELCSACHNELNGQVPLWD 496
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 33.4 bits (75), Expect = 0.011
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 24 WGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRAL 83
W LLH + P ++ + F+ C+ C F S
Sbjct: 305 WLLLHALTVNTPADRNV-----LEVIQNYIRYFFSCKECRDHFIQF------NFSPNEDP 353
Query: 84 AGWLCWVHNHINQKL 98
L HN++N +L
Sbjct: 354 VLQLWRAHNNVNARL 368
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.56
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 19/43 (44%)
Query: 42 EEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALA 84
E++ +K K ++ SL KL S ALA
Sbjct: 18 EKQALK-------KL---QA------SL-KLYAD--DSAPALA 41
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DK+ GY + ++ I A E ++++ M
Sbjct: 101 DKEGNGYISTDVMREILAELDETLSSEDLDAM 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.0
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 27 LHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRAL 83
+H +AA + + + + L+ + AR + RP S AL
Sbjct: 101 IHALAAKLLQ----ENDTTLVKTKELIKNYIT----ARIMAK----RPFDKKSNSAL 145
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 24.8 bits (55), Expect = 4.1
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
D+D G+ T L A + +E M
Sbjct: 16 DQDGDGHITVDELRRAMAGLGQPLPQEELDAM 47
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 25.2 bits (56), Expect = 5.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DK+ G+ L I E T ++ ++
Sbjct: 106 DKNADGFIDIEELGEILRATGEHVTEEDIEDL 137
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DK+ GY L + E T D+ E+
Sbjct: 105 DKNADGYIDLEELKIMLQATGETITEDDIEEL 136
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 24.7 bits (55), Expect = 7.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
D D+ G ++ L +A E T +E +EM
Sbjct: 89 DDDETGKISFKNLKRVAKELGENLTDEELQEM 120
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 24.5 bits (54), Expect = 8.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
D D G T L +A E T +E +EM
Sbjct: 111 DDDNSGTITIKDLRRVAKELGENLTEEELQEM 142
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 24.8 bits (55), Expect = 8.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DKD GY + L + EK T +E EM
Sbjct: 94 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 24.2 bits (53), Expect = 8.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DKD GY + L + EK T +E EM
Sbjct: 39 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 70
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 24.5 bits (54), Expect = 9.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
D + GY T + I + + T E +
Sbjct: 94 DNNCTGYLTKSQMKNILTTWGDALTDQEAIDA 125
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 24.5 bits (54), Expect = 9.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREM 46
DK+ G L + EK T +E +
Sbjct: 97 DKEGNGKVMGAELRHVLTTLGEKMTEEEVETV 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.467
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,985,648
Number of extensions: 100230
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 37
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)