RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13140
         (122 letters)



>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 112

 Score =  132 bits (334), Expect = 4e-42
 Identities = 61/112 (54%), Positives = 81/112 (72%)

Query: 10  EDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSL 69
           EDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D    
Sbjct: 1   EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 60

Query: 70  LKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
           +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSC
Sbjct: 61  IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 112


>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score =  113 bits (285), Expect = 8e-35
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 16  KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPP 75
           K ++G  +W   HT+ A +P++PT +E  ++ TF  L  + YPC  C+  F  L++  P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 76  ATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDG 115
            TSS+ A A W C +HN +N+ L K  +DC+ + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104


>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 26.3 bits (58), Expect = 1.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 34  YPEKPTADEEREMKT 48
           YPE+P  D E+++K 
Sbjct: 109 YPEEPKTDTEKDVKA 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.467 

Gapped
Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 506,021
Number of extensions: 20289
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 10
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)