RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13141
(84 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 80.9 bits (200), Expect = 2e-20
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ RD+ + + + + +LD+ L S+R + E + VL+NNAG
Sbjct: 34 LTARDVTRGQAAVQQL--QAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAG 91
Query: 61 QGGILNRITKDGLQLGMQID 80
+ T +Q + +
Sbjct: 92 IAFKVADPTPFHIQAEVTMK 111
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 80.4 bits (199), Expect = 3e-20
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
MA RD K ++ QV V++LDL L SVR FA + VLINNAG
Sbjct: 45 MAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGV----SGADVLINNAG 95
Query: 61 QGGILNRITKDG--LQLG 76
+ +T DG Q+G
Sbjct: 96 IMAVPYALTVDGFESQIG 113
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 61.5 bits (149), Expect = 3e-13
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLAS-LDSVREFAAQILDEEKHIHVLINNA 59
+ CRD+ K + E + +N+ VV +LD+ + ++ A I + +L+NNA
Sbjct: 41 LTCRDVTKGHEAVEKL-KNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNA 99
Query: 60 GQGGILNRITKDGLQLGMQIDQSE 83
G G + + + SE
Sbjct: 100 GVAGFSVDADRFKAMISDIGEDSE 123
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 48.3 bits (116), Expect = 2e-08
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
+ V + I K+ ++ D++ + + E +IL E K++ +L+NNAG
Sbjct: 80 SCDSVVDEI--KSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAG------- 130
Query: 68 ITKDGLQLGMQIDQ 81
IT+D L L M+ D+
Sbjct: 131 ITRDNLFLRMKNDE 144
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 48.3 bits (116), Expect = 2e-08
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
A S+ K + L+++ ++S++ F A+I E I +L+NNAG
Sbjct: 41 SAEKFENSM--KEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAG------- 91
Query: 68 ITKDGLQLGMQIDQ 81
IT+D L + M D+
Sbjct: 92 ITRDNLMMRMSEDE 105
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 48.2 bits (116), Expect = 2e-08
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ E K VVV K D+ + + V +D I +L+NNAG
Sbjct: 38 PASTSLDATAEEF--KAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAG--- 92
Query: 64 ILNRITKDGLQLGMQIDQ 81
IT+D L L M
Sbjct: 93 ----ITRDTLMLKMSEKD 106
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
D ++E+ K ++ + D+ + + + + + I LINNAG
Sbjct: 38 YHSDTTAMETMKETY--KDVEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGP 95
Query: 62 GGILNRITKDGLQLGMQIDQ 81
+ + + + D+
Sbjct: 96 -----YVFERKKLVDYEEDE 110
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 47.5 bits (114), Expect = 3e-08
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
A V + I + Q + D++ V +D I V++NNAG
Sbjct: 38 AAEEVSKQI--EAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAG------- 88
Query: 68 ITKDGLQLGMQIDQ 81
IT+D L + M+ Q
Sbjct: 89 ITRDTLLIRMKKSQ 102
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 47.5 bits (114), Expect = 3e-08
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
KA V E I K + ++A D V+ +++ + + VL+NNAG
Sbjct: 41 KAEAVVEEI--KAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAG------- 91
Query: 68 ITKDGLQLGMQIDQ 81
IT+D L + M+ +
Sbjct: 92 ITRDNLLMRMKEQE 105
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 47.6 bits (114), Expect = 3e-08
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
G A+ V +I + K D++ V A +++ + VL+NNAG
Sbjct: 61 SSAGAADEVVAAI--AAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAG--- 115
Query: 64 ILNRITKDGLQLGMQIDQ 81
IT+D L L M+ D
Sbjct: 116 ----ITRDTLLLRMKRDD 129
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 47.5 bits (114), Expect = 3e-08
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
A G+ + K + L++ +V L E ++VL+NNAG
Sbjct: 64 GAEGIGAAF--KQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAG------- 114
Query: 68 ITKDGLQLGMQIDQ 81
IT+D L + M+ D+
Sbjct: 115 ITQDQLAMRMKDDE 128
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 47.5 bits (114), Expect = 3e-08
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 7 GKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILN 66
+ E K + ++ DS ++ ++ E I VL+NNAG
Sbjct: 49 PRRVKWLEDQ--KALGFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAG------ 100
Query: 67 RITKDGLQLGMQIDQ 81
IT+D + M +
Sbjct: 101 -ITRDVVFRKMTRED 114
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 47.6 bits (114), Expect = 3e-08
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 7 GKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILN 66
+ + +D+A +S A ++L + + VLINNAG
Sbjct: 61 DHVSTWLMHE--RDAGRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAG------ 112
Query: 67 RITKDGLQLGMQIDQ 81
IT+D + M
Sbjct: 113 -ITRDATFMKMTKGD 126
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 47.2 bits (113), Expect = 4e-08
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + + + + + D+ S+ + A +++ + VL+NNAG
Sbjct: 54 RGEEGLRTTLKEL--REAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--- 108
Query: 64 ILNRITKDGLQLGMQIDQ 81
G + +
Sbjct: 109 ----RPGGGATAELADEL 122
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 47.1 bits (113), Expect = 4e-08
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNR 67
KAN V + I K + + D+A+ + V Q +D + +L+NNAG
Sbjct: 41 KANEVVDEI--KKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAG------- 91
Query: 68 ITKDGLQLGMQIDQ 81
+TKD L + M+ ++
Sbjct: 92 VTKDNLLMRMKEEE 105
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 47.1 bits (113), Expect = 4e-08
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
I + +++L S +S+ + +I + I +L+NNAG IT+D L L
Sbjct: 51 IANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAG-------ITRDKLFLR 103
Query: 77 MQIDQ 81
M +
Sbjct: 104 MSLLD 108
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 46.9 bits (112), Expect = 6e-08
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
RD + + + + H V D+ S D V A ++ I +L+N+AG
Sbjct: 56 RDAKNVSAAVDGL--RAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG--- 110
Query: 64 ILNRITKDGLQLGMQIDQ 81
G +
Sbjct: 111 ----RNGGGETADLDDAL 124
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 46.7 bits (112), Expect = 6e-08
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D+A ++++F +++ + I VL+NNA G+ + ++
Sbjct: 48 NLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNAC-------RGSKGILSSLLYEE 98
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 46.5 bits (111), Expect = 7e-08
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ + V+ +LD++ S + A ++D + V+ NAG I +
Sbjct: 85 LGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAG-------IFPEARLDT 137
Query: 77 MQIDQ 81
M +Q
Sbjct: 138 MTPEQ 142
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 46.4 bits (111), Expect = 8e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
V V +L+ S+++ A E + I +L+NNAG IT+DGL + MQ
Sbjct: 74 DVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAG-------ITRDGLFVRMQDQD 124
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 46.3 bits (111), Expect = 8e-08
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ + V V +L ++ Q + + L+NNAG IT+D L +
Sbjct: 46 ARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAG-------ITRDTLLVR 98
Query: 77 MQIDQ 81
M+ +
Sbjct: 99 MKDED 103
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 46.3 bits (111), Expect = 9e-08
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
L++ + +S+ I DE + +L+NNAG IT+D L + M+ ++
Sbjct: 56 NGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAG-------ITRDNLLMRMKEEE 106
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
RD + ++ + ++ D+ VR FA +L+NNAG
Sbjct: 40 RDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAG--- 96
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ +
Sbjct: 97 ----QGRVSTFAETTDEA 110
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ KT + K + S +S + ++ + I I NAG T D L
Sbjct: 67 LEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAG-------ATADSGILD 119
Query: 77 MQIDQ 81
++
Sbjct: 120 GSVEA 124
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 45.7 bits (109), Expect = 1e-07
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
+ R + + D++ + VR I++ HI L+NNAG
Sbjct: 39 SSRTAADLEKISLEC--RAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAG- 95
Query: 62 GGILNRITKDGLQLGMQIDQ 81
+ + G + +
Sbjct: 96 ------VGRFGALSDLTEED 109
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ K + + D+++ D V + QI + I LI NAG ++
Sbjct: 58 VGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAG-------VSVVKPATE 110
Query: 77 MQIDQ 81
+ +
Sbjct: 111 LTHED 115
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 45.2 bits (108), Expect = 2e-07
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
A DL A +I + +V+ K D++ V F Q++ +L+NNAG
Sbjct: 35 AIADLVPAPEAEAAI--RNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAG- 91
Query: 62 GGILNRITKDGLQLGMQIDQ 81
I + +Q
Sbjct: 92 ------IYPLIPFDELTFEQ 105
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 45.3 bits (108), Expect = 2e-07
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ + + +V+ + D++ A + ++E I V+ NAG + D
Sbjct: 54 LDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAG-------VFPDAPLAT 106
Query: 77 MQIDQ 81
M +Q
Sbjct: 107 MTPEQ 111
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 44.8 bits (107), Expect = 3e-07
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ K D+ + V + +I + + VLI NAG +TKD L + M +
Sbjct: 60 GFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAG-------VTKDQLLMRMSEED 110
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 44.9 bits (107), Expect = 3e-07
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R +G + + ++ + DL++ + + + I + + + INNAG
Sbjct: 64 RTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAG 120
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 44.9 bits (107), Expect = 3e-07
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 4 RDLGKANGVRESIITK-TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R + R+ I+ + QV D+ + D + L + I VL+NNAG
Sbjct: 38 RSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAG-- 95
Query: 63 GILNRITKDGLQLGMQIDQSE 83
DQ
Sbjct: 96 -----AAIPDAFGTTGTDQGI 111
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 44.5 bits (106), Expect = 4e-07
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ ++D+ D+V + + + + VL++NAG ++ D + M ++
Sbjct: 54 GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG-------LSADAFLMRMTEEK 104
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 44.7 bits (106), Expect = 4e-07
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 4 RDLGKANGVRESIIT---KTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
RD+ N I + N+ + +LD+ S SV QI+ E+ I VLI+NAG
Sbjct: 37 RDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG 96
Query: 61 QG 62
Sbjct: 97 HM 98
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 44.4 bits (106), Expect = 4e-07
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D++ SV+ A+I I +L+NNA I + +D
Sbjct: 53 KARAIAADISDPGSVKALFAEIQALTGGIDILVNNAS-------IVPFVAWDDVDLDH 103
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 44.4 bits (106), Expect = 4e-07
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + D++ +V A+ L+E +H + + AG + L + ++
Sbjct: 53 EAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAG-------VAHSALSWNLPLEA 103
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 44.0 bits (105), Expect = 5e-07
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+D+A SV A+ L + +++ AG IT+D M ++
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAG-------ITRDNFHWKMPLED 100
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 44.3 bits (105), Expect = 5e-07
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ ++ + + +V+ +LD+AS + + A ++ + +L NNAG
Sbjct: 40 IRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAG 96
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 44.3 bits (105), Expect = 5e-07
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQI--LDEEKHIHVLINNA 59
CR+ +A + + N+ + + ++DL + D+ + A I + +++ ++VL NNA
Sbjct: 54 TCRNREQAKELED---LAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNA 110
Query: 60 G---QGGILNRITKDGLQLGMQI 79
G + + + L +Q
Sbjct: 111 GIAPKSARITAVRSQELLDTLQT 133
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 44.1 bits (105), Expect = 6e-07
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 4 RDLGKANGVRESIITKT-NNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R V + I+ + + +V LD+ I + + +L+N A
Sbjct: 39 RSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAA-- 96
Query: 63 GILNRITKDGLQLGM 77
+ DG
Sbjct: 97 -----MFMDGSLSEP 106
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 43.7 bits (104), Expect = 7e-07
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + +V LD++ +SV EF+ ++L+ + V++ NAG
Sbjct: 46 LMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAG 89
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 43.7 bits (104), Expect = 7e-07
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + +D+A V + ++L E + + L+N AG I + G + +
Sbjct: 46 YPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAG-------ILRMGATDQLSKED 97
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 43.4 bits (103), Expect = 9e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 12 VRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
++++I + N +V V +LD+ + ++ F + E K I +L+NNAG
Sbjct: 76 LKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG 124
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLG 76
+ +V D+ S ++V Q +++ + VL+NNAG + +
Sbjct: 67 LADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG-------LGGQTPVVD 119
Query: 77 MQIDQ 81
M ++
Sbjct: 120 MTDEE 124
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 42.6 bits (101), Expect = 2e-06
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ K +V +D ++ + + A ++ E + +L+NNAG
Sbjct: 63 INKHGLEETAAKC--KGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 117
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family,
rossmann-fold, short-chain dehydrogenase/reducta
ALLO-threonine dehydrogenase; 1.90A {Escherichia coli}
PDB: 3asv_A*
Length = 248
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + +LD+ + ++ E A + E +I +L+NNAG
Sbjct: 47 NLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAG 83
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 42.4 bits (100), Expect = 2e-06
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 2 ACRDLGKANGVRESIITKTNNHQ-VVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
RDL + E+ + +LD+ SV ++ E + VL+ NAG
Sbjct: 35 TLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAG 92
Query: 61 QG 62
G
Sbjct: 93 LG 94
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R A E I + +V+V K ++ ++E QI + + V +NNA
Sbjct: 37 RSKKAALETAEEI--EKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAA--- 91
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ ++
Sbjct: 92 ----SGVLRPVMELEETH 105
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 41.8 bits (99), Expect = 4e-06
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 19 KTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGI 64
+ + + LD+ SV FA +D I VL+NNAG +
Sbjct: 49 RDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPL 94
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 41.8 bits (99), Expect = 4e-06
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
RD+ K V I + DL+ D++ FA +L VL+NNAG
Sbjct: 61 RDVEKLRAVEREI--VAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG--- 115
Query: 64 ILNRITK-DGLQLGMQIDQ 81
+ G M+ +
Sbjct: 116 ----VGWFGGPLHTMKPAE 130
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 41.6 bits (98), Expect = 4e-06
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDE--EKHIHVLINNA 59
RD+ KA ++ + +V V L + S+ F +++ + + +LINNA
Sbjct: 35 TARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA 89
Query: 60 G 60
G
Sbjct: 90 G 90
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 41.7 bits (99), Expect = 4e-06
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ A V + I + + +D++ +S + A + L E I L+NNA
Sbjct: 41 INAEAAEAVAKQI--VADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAA--- 95
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ K L + +
Sbjct: 96 -IFGGMKLDFLLTIDPEY 112
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 41.4 bits (98), Expect = 5e-06
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D++ ++ + ++ I L+NNAG + + M +
Sbjct: 69 DIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAG-------VFLAKPFVEMTQED 119
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 41.4 bits (98), Expect = 5e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAG 60
DL+S R A + + + +L+NNAG
Sbjct: 85 DLSSEAGARRLAQALGELSARLDILVNNAG 114
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 41.4 bits (98), Expect = 5e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+V+ LD+ ++ + +E + LINNAG
Sbjct: 70 RVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAG 106
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 41.4 bits (98), Expect = 5e-06
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ + + K D+ D ++ AQI E I +L+NNAG
Sbjct: 66 INQELVDRGMAAY--KAAGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAG--- 120
Query: 64 ILNRITKDGLQLGM 77
I + + M
Sbjct: 121 ----IIRRVPMIEM 130
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + K+D+ ++ F A+ D I + I NAG I+ L ++ Q
Sbjct: 72 RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAG-------ISTIALLPEVESAQ 122
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.9 bits (97), Expect = 7e-06
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+AN V E I K + + K D+ V + E + V+INNAG
Sbjct: 40 SKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAG--- 94
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ M +
Sbjct: 95 ----LENPVSSHEMSLSD 108
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 41.1 bits (97), Expect = 7e-06
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + + +F AQ + +LI N
Sbjct: 72 CLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHI 115
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 41.1 bits (97), Expect = 7e-06
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 29 KLDLASLDSVREFAAQILDEE-KHIHVLINNAGQGGILNRITKDGLQLGM 77
LD+ + D+V + A + + + +L+NNAG IT+D L M
Sbjct: 265 TLDVTADDAVDKITAHVTEHHGGKVDILVNNAG-------ITRDKLLANM 307
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 41.0 bits (97), Expect = 7e-06
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 29 KLDLASLDSVREFAAQILDEEKHI-HVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D++ + R Q+ V+++ AG IT+D L M D
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCAG-------ITQDEFLLHMSEDD 115
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 41.0 bits (97), Expect = 8e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R V + I + + + D+ D VR Q+ E I + + NAG
Sbjct: 64 RHSDALQVVADEI--AGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAG--- 118
Query: 64 ILNRITKDGLQLGMQIDQ 81
I L M +++
Sbjct: 119 ----IVSVQAMLDMPLEE 132
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 41.0 bits (97), Expect = 8e-06
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
A V +I + + + + ++ LD+ I VL+NNAG
Sbjct: 44 LKSEGAEAVAAAI--RQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAG--- 98
Query: 64 ILNRITKDGLQLGMQIDQ 81
M +
Sbjct: 99 ----GGGPKP-FDMPMSD 111
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 40.7 bits (96), Expect = 1e-05
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 4 RDLGKANGVRESI---ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R L + + + + T +V+ + ++ + + V LD I+ L+NN G
Sbjct: 50 RKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG 109
Query: 61 QGGILNRITKDGLQLGM 77
+
Sbjct: 110 -------GQFLSPAEHI 119
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 39.9 bits (94), Expect = 2e-05
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+++ ++ D+ L S++ + L E HI +L++N G I+ G + + Q
Sbjct: 108 RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVG-------ISNQGEVVSLTDQQ 158
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 39.9 bits (94), Expect = 2e-05
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
+ + LD+ + + AA +L + VL+NNAG+
Sbjct: 45 LVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRT 90
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
DLA+ ++ ++ + + + I VLINNAG + +
Sbjct: 58 DAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGG------LVGRKPLPEIDDTF 109
>2jah_A Clavulanic acid dehydrogenase; short-chain
dehydrogenase/reductase, lactamase inhibitor, AN
biosynthesis, NADPH, oxidoreductase; HET: MSE NDP;
1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Length = 247
Score = 39.4 bits (93), Expect = 2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 19 KTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+V V +LD+A V A ++ + +L+NNAG
Sbjct: 52 TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAG 93
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+++ + D+ ++ +++ E H+ +LINNAG
Sbjct: 39 NDIRATLLAESVDTL--TRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAG 95
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 39.5 bits (93), Expect = 2e-05
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R + E I ++T N +V + D+ D V+ ++++ H +++INNA
Sbjct: 58 RKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAA 113
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + + + S+ K +V+ +D+A+ + V + +L+NNAG
Sbjct: 39 RQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAG--- 94
Query: 64 ILNRITKDGLQLGM 77
+ +
Sbjct: 95 ----TGSNETIMEA 104
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 39.0 bits (92), Expect = 3e-05
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ AN V + I + Q + D+ S + A + + + +L+NNAG
Sbjct: 43 INADAANHVVDEI--QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAG--- 97
Query: 64 ILNRITKDGLQLGMQIDQ 81
M +
Sbjct: 98 ----GGGPKP-FDMPMAD 110
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 39.1 bits (92), Expect = 3e-05
Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 8/73 (10%)
Query: 10 NGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRIT 69
+ + +L S E + + VL++N
Sbjct: 31 HDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI-------FA 83
Query: 70 KD-GLQLGMQIDQ 81
+ ++
Sbjct: 84 PEFQPIDKYAVED 96
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 39.0 bits (92), Expect = 3e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R K + I + Q++ ++D+ + D +++ QI ++ I +LINNA
Sbjct: 38 RTKEKLEEAKLEI--EQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAA--- 92
Query: 64 ILNRITKDGLQLGM 77
+
Sbjct: 93 ----GNFICPAEDL 102
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 39.1 bits (92), Expect = 3e-05
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ ++D+ + + ++NNAG
Sbjct: 60 NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAG 96
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 38.9 bits (91), Expect = 4e-05
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILD----EEKHIHVLINNA 59
R ++E + + + +VV+ DL + V+ + + + E +LINNA
Sbjct: 41 RSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNA 100
Query: 60 G 60
Sbjct: 101 A 101
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 38.7 bits (91), Expect = 4e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
V+ DLA + V A ++ ++++ AG G
Sbjct: 50 AVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTG 88
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 38.6 bits (91), Expect = 4e-05
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
++ +LA+ + + + ++ +L+ NAG IT D L + M+
Sbjct: 61 NYTIEVCNLANKEECSNL----ISKTSNLDILVCNAG-------ITSDTLAIRMKDQD 107
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 38.7 bits (91), Expect = 5e-05
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
RD+ + + R ++ + V +DLA D+ E A + + + VL+NNAG
Sbjct: 52 RDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAG--- 107
Query: 64 ILNRITKDGLQLGM 77
I+ +
Sbjct: 108 ----ISHPQPVVDT 117
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 4 RDLGKANGVRESIITK-TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R + R+ I+ + V D+ + E + L + + +L+NNA
Sbjct: 38 RHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA--- 94
Query: 63 GILNRITKDGLQLGMQIDQ 81
G ++ I+
Sbjct: 95 GAAIPDSQSKTGTAQSIES 113
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 38.6 bits (91), Expect = 5e-05
Identities = 9/57 (15%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R+L +A+ + + K + + + D+++ + V++ + ++ + ++N AG
Sbjct: 53 RNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG 108
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 38.4 bits (90), Expect = 5e-05
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEK-HIHVLINNAGQG 62
R L V + ++ Q V D + VR Q+ E++ + VL+NNA G
Sbjct: 37 RHLDTLRVVAQEA--QSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAG 94
Query: 63 GILNRITKDGLQLGMQIDQ 81
T++
Sbjct: 95 VQTILNTRNKAFWETPASM 113
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 38.3 bits (90), Expect = 6e-05
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ A V I V K+D++ D V Q V++NNAG
Sbjct: 34 YNDATAKAVASEI--NQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAG--- 88
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ + +
Sbjct: 89 ----VAPSTPIESITPEI 102
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDE-EKHIHVLINNAGQG 62
R+ + N + QV D + + + + +LINN G
Sbjct: 46 RNEYELNECLSKW--QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLG-- 101
Query: 63 GILNRITKDGLQLGMQIDQ 81
+ L +
Sbjct: 102 -----AIRSKPTLDYTAED 115
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 38.3 bits (90), Expect = 7e-05
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVK-KLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R V + I + +++ L+ A+ RE AA++ E + L++NA
Sbjct: 46 RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASII 105
Query: 63 GILNRITK 70
G + +
Sbjct: 106 GPRTPLEQ 113
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D+ A V + + ++D+ SV + +D +L NAG
Sbjct: 44 LDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAG--- 95
Query: 64 ILNRITKDGLQLGMQIDQ 81
++ + + ++
Sbjct: 96 ----VSTMRPAVDITDEE 109
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 37.9 bits (89), Expect = 8e-05
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 4 RDLGKANGVRESIITKT-NNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R+ K V I +T Q + L + ++ ++ A +I + +++NAG
Sbjct: 44 RNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLL 103
Query: 63 GILNRITK 70
G + +++
Sbjct: 104 GDVCPMSE 111
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 37.9 bits (89), Expect = 8e-05
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R+ K I + + QV + D+ + + + +L+ + G
Sbjct: 39 RNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKAR-DLGGADILVYSTG--- 94
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ G + + ++
Sbjct: 95 ----GPRPGRFMELGVED 108
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 37.9 bits (89), Expect = 9e-05
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
D A E + + H V +D+ + +SV+ + ++E + +L+ AG
Sbjct: 45 LDEAMATKAVEDL--RMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAG 99
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 37.6 bits (88), Expect = 1e-04
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R+ K + I + ++V + LD + D V F D + V I N G
Sbjct: 36 AGRRNGEKLAPLVAEI--EAAGGRIVARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVG 92
Query: 61 QG--GILNRITKDGLQLGMQI 79
+ T + ++
Sbjct: 93 ANVNFPILETTDRVFRKVWEM 113
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 37.6 bits (88), Expect = 1e-04
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R L + + T + + +D+ + +V Q L E I +LIN A
Sbjct: 59 RSLPRVLTAARKLAGATGR-RCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAA--- 114
Query: 64 ILNRITKDGLQLGM 77
+
Sbjct: 115 ----GNFLCPAGAL 124
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 37.6 bits (88), Expect = 1e-04
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 5 DLGKANGVRE--SIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
G + +R + ++ V+ D+ + + A + D +L+NNAG
Sbjct: 56 GFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAG-- 113
Query: 63 GILNRITKDGLQLGMQIDQ 81
+ ++Q
Sbjct: 114 -----VQFVEKIEDFPVEQ 127
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 37.7 bits (88), Expect = 1e-04
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D + + D+ LD + A + + V+ +NAG
Sbjct: 63 VDQPALEQAVNGL--RGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVV 120
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ +A + I + + + V LD+ + + ++ VL+NNAG
Sbjct: 36 QQEEQAAETIKLI--EAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAG--- 90
Query: 64 ILNRITKDGLQLGMQIDQ 81
I + L + +
Sbjct: 91 ----IAQIKPLLEVTEED 104
>2ehd_A Oxidoreductase, oxidoreductase, short-chain
dehydrogenase/reducta; rossman fold, structural
genomics, NPPSFA; 2.40A {Thermus thermophilus}
Length = 234
Score = 37.5 bits (88), Expect = 1e-04
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D+ A + + + L+NNAG
Sbjct: 51 GALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAG 87
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 37.5 bits (88), Expect = 1e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG----QGGILNRITKD 71
+ KT K +++ SV E +Q + I V + NAG QG ++ D
Sbjct: 77 LQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYD 135
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 37.2 bits (87), Expect = 1e-04
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D + VR + + +V+ DL+ ++VR + + I +L+NNAG
Sbjct: 37 GDAAEIEKVRAGLA-AQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAG--- 92
Query: 64 ILNRITKDGLQLGMQIDQ 81
I L ++
Sbjct: 93 ----IQHTALIEDFPTEK 106
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ +++ + +V+ D++ V + + I NNAG G
Sbjct: 45 VSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEG 104
Query: 64 ILNRITK 70
N
Sbjct: 105 KQNPTES 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 2e-04
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 44/99 (44%)
Query: 1 M-ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHV-LINN 58
M + +L + + + KTN+H L K + + L+N
Sbjct: 338 MLSISNLTQE--QVQDYVNKTNSH----------------------LPAGKQVEISLVN- 372
Query: 59 AGQGGILNRI----TKD--GLQLGMQ-------IDQSEV 84
G N + + GL L ++ +DQS +
Sbjct: 373 ----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 36.8 bits (86), Expect = 2e-04
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 8/81 (9%)
Query: 4 RDLGKANGVRESIITK-TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R+ + ++ I+ ++ D+ + L + I +L+NNAG
Sbjct: 58 RNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAG-- 115
Query: 63 GILNRITKDGLQLGMQIDQSE 83
Sbjct: 116 -----ANLADGTANTDQPVEL 131
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 36.8 bits (86), Expect = 2e-04
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D V + +V+ + DLA L S + ++ E I L+NNAG
Sbjct: 62 GDAEGVAPVIAEL--SGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAG--- 116
Query: 64 ILNRITKD 71
I
Sbjct: 117 ----IASI 120
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
++DL F + + VL+NNA I G L +++ +
Sbjct: 55 QVDLEDERERVRFVEEAAYALGRVDVLVNNAA-------IAAPGSALTVRLPE 100
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 5 DLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGI 64
G I + + V DL+ + + A E + +L+NNAG
Sbjct: 35 GFGDPAPALAEI--ARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAG---- 88
Query: 65 LNRITKDGLQLGMQIDQ 81
I ++
Sbjct: 89 ---IQHVAPVEQFPLES 102
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 36.1 bits (84), Expect = 4e-04
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 17 ITKTNNHQVVVKKLDLASLD----SVREFAAQILDEEKHIHVLINNAGQGGILNRITKDG 72
+ K ++ VV + DL + + S E VL+NNA
Sbjct: 68 LNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNAS-------AFYPT 120
Query: 73 LQLGMQID 80
+ +
Sbjct: 121 PLVQGDHE 128
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 35.9 bits (84), Expect = 4e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEK-HIHVLINNAG 60
R+ + N ++ +V DL+S +E + + +++L+NNAG
Sbjct: 39 CSRNQKELNDCLTQW--RSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAG 96
Query: 61 QGGILNRITKDGLQLGM 77
I
Sbjct: 97 -------IVIYKEAKDY 106
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 36.0 bits (84), Expect = 4e-04
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + + LD+ ++RE A +++ + V++ NAG + G + +Q
Sbjct: 78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAG-------VLSWGRVWELTDEQ 128
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
+V + D+A L+ + A I +L NAG +++ +
Sbjct: 55 RVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAG-------VSELEPFDQV 101
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
+ V + DLAS V + Q+ + ++++AG G
Sbjct: 47 NNVGYRARDLASHQEVEQLFEQL---DSIPSTVVHSAGSG 83
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEK-HIHVLINNAG 60
R+ + + E + V DL S + + +++L+NNAG
Sbjct: 51 CSRNEKELDECLEIW--REKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAG 108
Query: 61 QGGILNRITKDGLQLGM 77
+
Sbjct: 109 -------VVIHKEAKDF 118
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 35.6 bits (83), Expect = 5e-04
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
DL + + +++NNAG + G
Sbjct: 72 PGDLREAAYADGLPGAVAAGLGRLDIVVNNAG-------VISRGRITETTDAD 117
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R N + I + + + DL + ++++ + +LINN G
Sbjct: 42 RREENVNETIKEIRAQYPDAILQPVVADLGTEQGC----QDVIEKYPKVDILINNLG--- 94
Query: 64 ILNRITKDGLQLGM 77
I + +
Sbjct: 95 ----IFEPVEYFDI 104
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 35.3 bits (82), Expect = 7e-04
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
V D+ SL + A + L I LI NAG I L
Sbjct: 51 GNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAG-------IWDYSTALAD 98
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 35.2 bits (82), Expect = 8e-04
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
A V I + + + + D++ +VR A + + VL+NNAG
Sbjct: 60 GKAAAAEEVAGKI--EAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAG--- 114
Query: 64 ILNRITKDGLQLGMQIDQ 81
I
Sbjct: 115 ----IMPLTTIAETGDAV 128
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 35.3 bits (82), Expect = 8e-04
Identities = 10/57 (17%), Positives = 27/57 (47%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+L + ++ + + + + D+A +R+ +++D + +L+NNAG
Sbjct: 39 WNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAG 95
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 38 VREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+R+ + ++ K + +L+ NAG K G + +
Sbjct: 68 LRKDLDLLFEKVKEVDILVLNAG-------GPKAGFFDELTNED 104
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + + V + + + + D+ V + + + V+INNA
Sbjct: 43 RTVERLEDVAKQV--TDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAF--- 97
Query: 64 ILNRITKDGLQLGMQIDQ 81
R+ +
Sbjct: 98 ---RVPSMKPFANTTFEH 112
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+ N + + + + +V+ K D++ V EF + + I VL NNAG
Sbjct: 39 LLEDRLNQIVQEL--RGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMD 96
Query: 64 ILNRITK 70
+ + +
Sbjct: 97 GVTPVAE 103
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
++D+ DS+ A ++ + +L+NNA + + +
Sbjct: 60 QMDVTRQDSIDAAIAATVEHAGGLDILVNNAA-------LFDLAPIVEI 101
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 34.8 bits (81), Expect = 0.001
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 36 DSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
L + I +++N I + +L +
Sbjct: 57 QKPERLVDATLQHGEAIDTIVSNDY-------IPRPMNRLPL 91
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 34.5 bits (80), Expect = 0.001
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D+ + D V+ I E I VL+NNAG I G M + +
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAG-------IESYGKIESMSMGE 97
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
+ S+ + + D+ S ++V ++ + I L NNAG
Sbjct: 37 LDMNREALEKAEASV--REKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94
Query: 62 GGILNRITK 70
G +
Sbjct: 95 QGAFAPVQD 103
>3e9n_A Putative short-chain dehydrogenase/reductase; structural
genomics, unknown function, oxidoreductase, PSI- 2;
2.40A {Corynebacterium glutamicum}
Length = 245
Score = 34.5 bits (80), Expect = 0.001
Identities = 6/58 (10%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
V + D+ ++ H+ L++ A + +D + +
Sbjct: 49 GVEPIESDIVKEVLEEGGVDKL-KNLDHVDTLVHAAA-------VARDTTIEAGSVAE 98
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+D AN +++ + + +V + + DL++ + V + E + + IN G
Sbjct: 46 KDSDTANKLKDEL--EDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVG--- 100
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ +
Sbjct: 101 ----KVLKKPIVETSEAE 114
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 34.2 bits (79), Expect = 0.002
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITK 70
+ + + ++ +I + + + AG N +
Sbjct: 65 TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSD 106
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 34.2 bits (79), Expect = 0.002
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 5 DLGKANGVRESIITKTNNHQVVVKKLDL-ASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D + + + D+ + ++ +I D+ K + +LIN AG
Sbjct: 37 DRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAG--- 93
Query: 64 ILNRITKD 71
I D
Sbjct: 94 ----ILDD 97
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/53 (16%), Positives = 11/53 (20%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ E A VL+NNA L D
Sbjct: 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNAS-------SFYPTPLLRNDEDG 165
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 33.9 bits (78), Expect = 0.003
Identities = 9/53 (16%), Positives = 11/53 (20%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ E A VL+NNA L D
Sbjct: 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNAS-------SFYPTPLLRNDEDG 128
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
LD+ + + A +E + L+NNAG I+ +++
Sbjct: 57 HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAG-------ISTGMFLETESVER 102
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 33.7 bits (78), Expect = 0.003
Identities = 5/53 (9%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D++ V + + + +++N+G + +L + +
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSG-------MEVWCDELEVTQEL 122
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
A I + + K DL + V + D+ IH L++ AG
Sbjct: 41 GAAEGAATAVAEI--EKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGG-- 96
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ M
Sbjct: 97 ----LIARKTIAEMDEAF 110
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 33.6 bits (78), Expect = 0.003
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 34 SLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
D + + L+ +HVL++ A + L +
Sbjct: 53 EKDDPKGLVKRALEALGGLHVLVHAAA-------VNVRKPALEL 89
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 33.4 bits (77), Expect = 0.004
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
D+ + A E H+H L+N AG LG
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAG-------TAPGEKILGR 100
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
++V +D D +R+ + + +++ NAG + + +
Sbjct: 74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAG-------VAAPQAWDDITPED 124
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 33.0 bits (76), Expect = 0.004
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D+ +++ + I L+ NAG
Sbjct: 51 RFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAG 87
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 32.9 bits (76), Expect = 0.005
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + V + I Q + + D++ +R ++ + H+ +++ NAG G
Sbjct: 60 RTRTEVEEVADEI--VGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGING 117
Query: 64 ILNRITK 70
+ I
Sbjct: 118 VWAPIDD 124
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 33.3 bits (76), Expect = 0.005
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + +D+ + + + + I +L+NNA L +
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNAS-------AISLTNTLDTPTKR 152
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ ++D++S + + + VL+NNAG
Sbjct: 73 SKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAG 110
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 32.9 bits (76), Expect = 0.005
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
D + + F + + + +++NA G + D
Sbjct: 79 DFSCETGIMAFIDLLKTQTSSLRAVVHNAS-------EWLAET-PGEEADN 121
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 33.0 bits (76), Expect = 0.005
Identities = 6/52 (11%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQL 75
+++ ++D+ D+++ + + + +++ NA + +G +L
Sbjct: 90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA-------LASEGTRL 134
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 33.0 bits (76), Expect = 0.005
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + I +T + V D+ D V A + E + +L+NNAG
Sbjct: 65 RRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAG--- 120
Query: 64 ILNRITKDGLQL 75
+ L
Sbjct: 121 ----SNVPPVPL 128
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 33.0 bits (76), Expect = 0.005
Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
A V +I K N K ++ ++ + + + + ++ +N+G
Sbjct: 62 NSTESAEEVVAAI--KKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSG--- 116
Query: 64 ILNRITKDGLQLGMQIDQ 81
+ G + ++
Sbjct: 117 ----VVSFGHVKDVTPEE 130
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 32.5 bits (75), Expect = 0.006
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ D +++ + + ++ + +L+N+AG I +
Sbjct: 87 RADNRDAEAIEQAIRETVEALGGLDILVNSAG-------IWHSAPLEETTVAD 132
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
DLA L+ A ++ + + VL+NNAG
Sbjct: 85 VADLADLEGAANVAEEL-AATRRVDVLVNNAG 115
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
V + D A+L + ++ E I VL NAG
Sbjct: 75 GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAG 112
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 32.2 bits (74), Expect = 0.008
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQ 78
+ ++D+ +V A + E + V++ NAG I G L +Q
Sbjct: 72 KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAG-------ICPLGAHLPVQ 119
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 32.2 bits (74), Expect = 0.009
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEK----HIHVLINNAGQGGILNRITKDG 72
+ V+ K DL+ S+ + I+D VL+NNA
Sbjct: 56 LNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNAS-------AYYPT 108
Query: 73 LQLGMQIDQSE 83
L
Sbjct: 109 PLLPGDDTNGA 119
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
K+D+ + + V+E + + I +L+NNAG
Sbjct: 59 KIDVTNEEEVKEAVEKTTKKYGRIDILVNNAG 90
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 32.1 bits (74), Expect = 0.010
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R+ + + I + D+ + + NNAG G
Sbjct: 40 RNGNALAELTDEI--AGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALG 97
Query: 64 ILNRIT 69
+ I+
Sbjct: 98 AMGEIS 103
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 31.8 bits (73), Expect = 0.011
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D+ DSVR +++ + VL NNAG
Sbjct: 74 DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAG 111
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 31.8 bits (73), Expect = 0.011
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
++V ++ D+ +S+ LDE + +++ NAG
Sbjct: 75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAG 111
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 31.7 bits (73), Expect = 0.011
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 17 ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+V+ + D+A V A +++ I VL+NNAG
Sbjct: 46 HWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAG 89
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 31.8 bits (73), Expect = 0.012
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 4 RDLGKANGVRESIITKTNN-HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
R+ K G + + N + + D+ + D + +H +++ AG
Sbjct: 43 RNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGS 102
Query: 63 GILNRITK 70
+ IT+
Sbjct: 103 ENIGPITQ 110
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 31.6 bits (72), Expect = 0.016
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
++A D ++ + VL+NNAG I +D + ++
Sbjct: 94 NVADWDQAAGLIQTAVETFGGLDVLVNNAG-------IVRDRMIANTSEEE 137
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 31.3 bits (72), Expect = 0.016
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
LD+ + + +HVL+NNAG I G + +
Sbjct: 59 HLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAG-------ILNIGTIEDYALTE 104
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 31.4 bits (72), Expect = 0.017
Identities = 5/59 (8%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
++D++ + + + L+ NAG + + ++
Sbjct: 75 CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAG-------VVHLASLIDTTVED 126
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins
(A/B), NAD(P)-binding rossmann-fold structural
genomics, NPPSFA; HET: NAP; 2.20A {Thermus
thermophilus}
Length = 207
Score = 31.4 bits (72), Expect = 0.017
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 30 LDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
DLA + + + +L++ G+ G
Sbjct: 49 ADLADELEAKALLEEA----GPLDLLVHAVGKAG 78
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 31.4 bits (72), Expect = 0.018
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
K D+ D VR A +D I +L+NNA L + +
Sbjct: 68 KCDIREEDQVRAAVAATVDTFGGIDILVNNAS-------AIWLRGTLDTPMKR 113
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 31.6 bits (72), Expect = 0.018
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 33 ASLDSVREFAAQI----LDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
V + + I +D+ I +L+NNAG I +D M +
Sbjct: 373 PDQHDVAKDSEAIIKNVIDKYGTIDILVNNAG-------ILRDRSFAKMSKQE 418
Score = 28.5 bits (64), Expect = 0.18
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 32 LASLDSVREFAAQI---LDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+A ++V + + + +HV+INNAG I +D M
Sbjct: 69 VADYNNVLDGDKIVETAVKNFGTVHVIINNAG-------ILRDASMKKMTEKD 114
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 31.4 bits (72), Expect = 0.018
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
D+ D V+ ++ + + ++NNAG
Sbjct: 60 LCDVTQEDDVKTLVSETIRRFGRLDCVVNNAG 91
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 31.3 bits (72), Expect = 0.018
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
R + ++ + V + + A ++ + +L++NA
Sbjct: 46 RKQENVDRTVATL--QGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAA--- 100
Query: 64 ILNRITKD-GLQLGM 77
+ G +
Sbjct: 101 ----VNPFFGNIIDA 111
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 31.3 bits (72), Expect = 0.019
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D++S A + ++VL+NNAG
Sbjct: 58 RHDVSSEADWTLVMAAVQRRLGTLNVLVNNAG 89
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 31.3 bits (72), Expect = 0.019
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D + D + + L+NNAG
Sbjct: 60 QHDSSDEDGWTKLFDATEKAFGPVSTLVNNAG 91
>4e4y_A Short chain dehydrogenase family protein; structural genomics,
the center for structural genomics of I diseases,
csgid, niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 31.0 bits (71), Expect = 0.027
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
K DL + I + + NAG I G + I+
Sbjct: 50 KADLTKQQDITNVLDII--KNVSFDGIFLNAG-------ILIKGSIFDIDIES 93
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides}
PDB: 2wdz_A* 3lqf_A*
Length = 254
Score = 30.9 bits (71), Expect = 0.027
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
D+ +++ AA+ + + +L+N+AG
Sbjct: 64 VADVTDAEAMTAAAAEA-EAVAPVSILVNSAG 94
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 30.6 bits (70), Expect = 0.034
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGL 73
D+ + + + Q + H+ + ++N+G + G
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNSG-------VVSFGH 111
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 30.6 bits (70), Expect = 0.038
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ D++ V L + + +L+NNAG
Sbjct: 55 DAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAG 92
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 30.3 bits (69), Expect = 0.042
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
D+ D+V A+ +++ I + +NNA
Sbjct: 71 VGDIRDGDAVAAAVAKTVEQFGGIDICVNNAS 102
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 30.3 bits (69), Expect = 0.044
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
D+ S V+ A + + V +N AG I +
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCAG-------IAVASKTYNL 105
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 30.2 bits (69), Expect = 0.044
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+DL + SVR +D + ++ NNA
Sbjct: 63 VVDLTNEVSVRALIDFTIDTFGRLDIVDNNAA 94
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 30.2 bits (69), Expect = 0.049
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 13/51 (25%)
Query: 29 KLDLASLDSVREFAAQILDE------EKHIHVLINNAGQGGILNRITKDGL 73
+L SL V + + +E +LINNAG I
Sbjct: 63 GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAG-------IGPGAF 106
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 29.9 bits (68), Expect = 0.053
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGM 77
++ S DSV + + ++ + G G + +DG M
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADM 130
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 29.9 bits (68), Expect = 0.054
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 23 HQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
++V ++D+ D+++ +++ + +++ NAG
Sbjct: 76 RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAG 113
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase;
HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 29.8 bits (68), Expect = 0.056
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R + + + +DL D+ + L + +L+NNA
Sbjct: 39 RTNSDLVSLAKEC------PGIEPVCVDLGDWDATEK----ALGGIGPVDLLVNNAA 85
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 29.8 bits (68), Expect = 0.061
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R + + + +DL ++ + L + +L+NNA
Sbjct: 39 RTQADLDSLVREC------PGIEPVCVDLGDWEATE----RALGSVGPVDLLVNNAA 85
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.5 bits (67), Expect = 0.072
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGI--LNRITKDGLQLGMQI 79
+D+ ++DS+++ Q+ + +++ G L +T + + +
Sbjct: 40 TVDITNIDSIKKMYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISS 88
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 29.4 bits (67), Expect = 0.078
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAG 60
DL+ ++ + + + +++L+NN
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVA 134
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 29.4 bits (67), Expect = 0.079
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 25 VVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ + LD+ + +FA ++ + + VL N AG G L +
Sbjct: 52 IQTRVLDVTKKKQIDQFANEV----ERLDVLFNVAG-------FVHHGTVLDCEEKD 97
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 29.1 bits (66), Expect = 0.11
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAG 60
DL+ R + + + +L AG
Sbjct: 108 DLSDESFARSLVHKAREALGGLDILALVAG 137
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 29.1 bits (66), Expect = 0.13
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ A+ V +I + + V D+ + + + + + + L+NNAG
Sbjct: 59 ANREAADAVVAAI--TESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAG 113
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short
chain dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 28.8 bits (65), Expect = 0.16
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 31 DLASLDSVREFAAQILDEEK-HIHVLINNAGQGG 63
DL++ + ++ A +L + + L+ AG G
Sbjct: 41 DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP 74
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 28.4 bits (64), Expect = 0.20
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKH--IHVLINNAGQGGILNRITKD 71
++ + + + Q + + + AG + +KD
Sbjct: 43 SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKD 92
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 28.6 bits (64), Expect = 0.20
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 33 ASLDSVREFAAQI---LDEEKHIHVLINNAG 60
A +SV + A I + + +L+NNAG
Sbjct: 81 ADYNSVIDGAKVIETAIKAFGRVDILVNNAG 111
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 28.3 bits (64), Expect = 0.21
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQ 78
++ + D+ + VR A+ EE + +++ AG + LG +
Sbjct: 40 DLIYVEGDVTREEDVRRAVARA-QEEAPLFAVVSAAG-------VGLAEKILGKE 86
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 28.4 bits (64), Expect = 0.22
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 19 KTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHV 54
+ + V+K++ + + RE + L + H+++
Sbjct: 33 RIDGKTYVIKRVKYNNEKAERE--VKALAKLDHVNI 66
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 27.7 bits (62), Expect = 0.33
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDGLQLGMQIDQ 81
+ S+++ + LD I V++NNAG I +D + +
Sbjct: 72 NYDSVEAGEKLVKTALDTFGRIDVVVNNAG-------ILRDRSFSRISDED 115
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 27.6 bits (62), Expect = 0.35
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDG 72
D+ +V A + + + +++N AG G + +++DG
Sbjct: 58 AADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDG 100
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 25.6 bits (57), Expect = 2.1
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
D+ + VR + + + ++ N G
Sbjct: 70 HCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLS 104
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 25.3 bits (56), Expect = 2.2
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 7 GKANGVRESIITKTNNHQVVVKKLDLASLDSVREF--AAQILDEEKHIHVL 55
G V + + + +V++K LD A + F AA ++ + H H++
Sbjct: 27 GVRREVGDY--GQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 25.4 bits (56), Expect = 2.6
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 22 NHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ V + D V ++L ++K + ++ AG
Sbjct: 48 SVIVKMTDSFTEQADQVTAEVGKLLGDQK-VDAILCVAG 85
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 24.6 bits (54), Expect = 4.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 19 KTNNHQVVVKKLDLASLDSVRE 40
+ V +KK+ + L +
Sbjct: 54 LLDGVPVALKKVQIFDLMDAKA 75
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus}
SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 23.8 bits (52), Expect = 7.0
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 17 ITKTNNHQVVVK---KLDLASLDSVREFAAQILDEEKHIHVLIN 57
+ VV++ +LD +++ +R + + + ++ N
Sbjct: 5 LEMVTRETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWN 48
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 23.9 bits (52), Expect = 7.1
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 19 KTNNHQVVVKKLDLASL------DSVREFAAQILDEEKHIHV 54
+ Q V+K+++++ + +S RE +L KH ++
Sbjct: 46 TEDGRQYVIKEINISRMSSKEREESRRE--VAVLANMKHPNI 85
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 24.0 bits (53), Expect = 7.6
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 31 DLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITKDG 72
+L D VR+ A +I++ K V+++ QG + + +
Sbjct: 198 ELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALG--VDSEN 237
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 23.7 bits (52), Expect = 8.2
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 14 ESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNA 59
E I ++ KLDL + +F +K V+IN A
Sbjct: 25 EVIKVYNSSEIQGGYKLDLTDFPRLEDFI-----IKKRPDVIINAA 65
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 23.8 bits (51), Expect = 8.2
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 8 KANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHV 54
++ GV + ++T+ + + L+L L +I K H
Sbjct: 81 QSLGVPGAAASRTSEIEGANQLLELFDLFRYFVH-REIYPGSKITHF 126
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 23.7 bits (52), Expect = 8.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 21 NNHQVVVKKLDLASLDSVREFAAQI 45
+ +V +K+ S + EF +I
Sbjct: 62 DGAKVALKRRTPESSQGIEEFETEI 86
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 23.8 bits (52), Expect = 9.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 34 SLDSVREFAAQILDEEKHIH 53
L VR A Q+ + +H
Sbjct: 121 PLPHVRHMAYQLCHALRFLH 140
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 23.7 bits (52), Expect = 9.8
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 26 VVKKLDLASLDSVREFAAQILDEEKHIHVL 55
++++++ V A +L I ++
Sbjct: 372 MIEQINAVQKQDVSRLAKILLSASPSISLI 401
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.363
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,198,721
Number of extensions: 61930
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 214
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)