RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13141
(84 letters)
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 43.0 bits (101), Expect = 6e-07
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R +G + + ++ + DL++ + + + I + + + INNAG
Sbjct: 39 GCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAG 98
Query: 61 QG 62
Sbjct: 99 LA 100
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 251
Score = 41.9 bits (98), Expect = 1e-06
Identities = 10/60 (16%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+A R+L +A+ + + K + + + D+++ + V++ + ++ + ++N AG
Sbjct: 34 VASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG 92
>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase
{Azoarcus sp. ebn1 [TaxId: 76114]}
Length = 247
Score = 40.6 bits (95), Expect = 3e-06
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 5 DLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG--QG 62
DL A +I + +V+ K D++ V F Q++ +L+NNAG
Sbjct: 36 DLVPAPEAEAAI--RNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPL 93
Query: 63 GILNRITKDGLQLGMQI 79
+ +T + + +I
Sbjct: 94 IPFDELTFEQWKKTFEI 110
>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium
aquaticum [TaxId: 144185]}
Length = 258
Score = 40.5 bits (94), Expect = 4e-06
Identities = 8/61 (13%), Positives = 20/61 (32%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + +++ + +V+ D++ V + + I NNAG
Sbjct: 33 LVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAG 92
Query: 61 Q 61
Sbjct: 93 I 93
>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase,
PGDH {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 40.4 bits (94), Expect = 5e-06
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ +L + ++ + + + + D+A +R+ +++D + +L+NNAG
Sbjct: 32 LVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAG 91
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 39.9 bits (93), Expect = 6e-06
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 1 MACRDLGKANGVRESIITK-TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNA 59
+ R + R+ I+ + V D+ + E + L + + +L+NNA
Sbjct: 34 ITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA 93
Query: 60 G 60
G
Sbjct: 94 G 94
>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 272
Score = 39.2 bits (91), Expect = 1e-05
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 1 MACRDLGKANGVRESII-TKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNA 59
+ R + R+ I+ + + QV D+ + D + L + I VL+NNA
Sbjct: 34 ITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNA 93
Query: 60 GQG 62
G
Sbjct: 94 GAA 96
>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 38.9 bits (90), Expect = 1e-05
Identities = 8/62 (12%), Positives = 15/62 (24%)
Query: 9 ANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRI 68
+ + +L S E + + VL++N I
Sbjct: 29 CHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPI 88
Query: 69 TK 70
K
Sbjct: 89 DK 90
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 38.7 bits (89), Expect = 2e-05
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ RD+ + + + + +LD+ L S+R + E + VL+NNAG
Sbjct: 33 LTARDVTRGQAAVQQL--QAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAG 90
Query: 61 QGGILNRITKDGLQLGMQID 80
+ T +Q + +
Sbjct: 91 IAFKVADPTPFHIQAEVTMK 110
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 37.1 bits (86), Expect = 6e-05
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
++DL F + + VL+NNA
Sbjct: 54 QVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAA 88
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 36.9 bits (85), Expect = 6e-05
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
++ + AN V + I + Q + D+ S + A + + + +L+NNAG
Sbjct: 40 VSDINADAANHVVDEI--QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAG 97
Query: 61 QGG 63
GG
Sbjct: 98 GGG 100
>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 297
Score = 36.6 bits (84), Expect = 9e-05
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 1 MACRDLGKANGVRESI---ITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLIN 57
+A R L + + + + T +V+ + ++ + + V LD I+ L+N
Sbjct: 41 IASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVN 100
Query: 58 NAGQG 62
N G
Sbjct: 101 NGGGQ 105
>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus
bisporus) [TaxId: 5341]}
Length = 260
Score = 35.1 bits (80), Expect = 3e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ R A V E + K + + D+++ D V + QI + I LI NAG
Sbjct: 38 VIYRSAADAVEVTEKVG-KEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAG 96
Query: 61 QG 62
Sbjct: 97 VS 98
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase
{Lactobacillus brevis [TaxId: 1580]}
Length = 251
Score = 34.6 bits (79), Expect = 5e-04
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ R +S+ Q+ + D + D + + L+NNAG
Sbjct: 35 ITGRHSDVGEKAAKSV---GTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAG 91
Query: 61 Q 61
Sbjct: 92 I 92
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 34.2 bits (78), Expect = 6e-04
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 2 ACRDLGKANGVRESIITK-TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
R+ + ++ I+ ++ D+ + L + I +L+NNAG
Sbjct: 34 TGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAG 93
Query: 61 QG 62
Sbjct: 94 AN 95
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 34.2 bits (78), Expect = 6e-04
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDE-EKHIHVLINNA 59
R+ + N +K + V DL+S +E + + +++L+NNA
Sbjct: 37 TCSRNQKELNDCLTQWRSKGFKVEASV--CDLSSRSERQELMNTVANHFHGKLNILVNNA 94
Query: 60 G--QGGILNRITKDGLQLGMQID 80
G T + L M I+
Sbjct: 95 GIVIYKEAKDYTVEDYSLIMSIN 117
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 33.8 bits (77), Expect = 8e-04
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDE-EKHIHVLINNAG-- 60
R+ + N + QV D + + + + +LINN G
Sbjct: 40 RNEYELNECLSKW--QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAI 97
Query: 61 QGGILNRITKDGLQLGMQI 79
+ T + +
Sbjct: 98 RSKPTLDYTAEDFSFHIST 116
>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermus thermophilus [TaxId: 274]}
Length = 242
Score = 33.5 bits (76), Expect = 0.001
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQG 62
+D+A SV A+ L + +++ AG
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAGIT 88
>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 31.1 bits (70), Expect = 0.008
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 25 VVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQGGILNRITK 70
V D+ D V+ ++ + + ++NNAG R +
Sbjct: 53 AVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEE 98
>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 253
Score = 30.7 bits (69), Expect = 0.010
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + + + + + + D++S A + ++VL+NNAG
Sbjct: 35 FSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAG 89
Query: 61 --QGGILNRITKDGLQLGMQI 79
G + + ++I
Sbjct: 90 ILLPGDMETGRLEDFSRLLKI 110
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial
(DECR) {Human (Homo sapiens), [TaxId: 9606]}
Length = 294
Score = 30.5 bits (68), Expect = 0.013
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
A R + E I ++T N +V + D+ D V+ ++++ H +++INNA
Sbjct: 55 ASRKMDVLKATAEQISSQTGN-KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAG 113
Query: 62 G 62
Sbjct: 114 N 114
>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase
{Streptomyces hydrogenans [TaxId: 1905]}
Length = 254
Score = 30.3 bits (68), Expect = 0.013
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 22 NHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
+ LD+ + + A +E + L+NNAG
Sbjct: 50 GDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGI 89
>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 244
Score = 30.4 bits (68), Expect = 0.016
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNA 59
LD+ + + +HVL+NNA
Sbjct: 53 AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNA 88
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 30.0 bits (67), Expect = 0.022
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 2 ACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
A V +I + + D+ + VR + + + ++ N G
Sbjct: 36 ADIADDHGQKVCNNI---GSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92
Query: 62 GG 63
Sbjct: 93 LS 94
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium
[TaxId: 1404]}
Length = 261
Score = 30.1 bits (67), Expect = 0.022
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINN 58
+AN V E I K + + K D+ V + E + V+INN
Sbjct: 40 SKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINN 92
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 244
Score = 28.8 bits (64), Expect = 0.047
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 1 MACRDLGKANGVRESIITKTNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAG 60
+ + K +V +D ++ + + A ++ E + +L+NNAG
Sbjct: 36 LWDINKHGLEETAAKC--KGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 93
Query: 61 QGG 63
Sbjct: 94 VVY 96
>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 257
Score = 28.7 bits (63), Expect = 0.053
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 16 IITKTNNHQVVVKKLDLASLDSVREFAAQILDEE-KHIHVLINNAGQG 62
+ + +V+ DL++ + ++ A +L + K + L+ AG G
Sbjct: 29 VGIDIRDAEVIA---DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG 73
>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Trypanosoma cruzi [TaxId: 5693]}
Length = 266
Score = 28.7 bits (63), Expect = 0.054
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 4 RDLGKANGVRESIITKTNNHQVVVKK---LDLASLDSVREFAAQILDEEKHIHVLINNAG 60
G A + + V+ K L + LD + VL+NNA
Sbjct: 34 HSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNAS 93
>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 242
Score = 27.6 bits (61), Expect = 0.14
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 29 KLDLASLDSVREFAAQILDEEKHIHVLINNAGQGG 63
+DL D+ + I + +L+NNA
Sbjct: 56 CVDLGDWDATEKALGGI----GPVDLLVNNAALVI 86
>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein
reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 237
Score = 27.4 bits (60), Expect = 0.15
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 24 QVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNA 59
+ ++D+ D+V + + + + VL++NA
Sbjct: 46 GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA 81
>d1avwb_ b.42.4.1 (B:) Soybean trypsin inhibitor {Soybean (Glycine
max) [TaxId: 3847]}
Length = 177
Score = 26.0 bits (57), Expect = 0.53
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 3 CRDLG----KANGVRESIITKTNNHQVVVKKLD 31
C D+G +G R +++K V +KLD
Sbjct: 145 CGDIGISIDHDDGTRRLVVSKNKPLVVQFQKLD 177
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 84
Score = 23.4 bits (50), Expect = 3.0
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 20 TNNHQVVVKKLDLASLDSVREFAAQILDEEKHIHVLINNAGQ 61
+ + V L+ + + E A +K + NNAGQ
Sbjct: 29 GKHLKTYVDNLNKLIIGTEFENADLNTIVQKSEGGIFNNAGQ 70
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 64
Score = 21.9 bits (47), Expect = 7.0
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 37 SVREFAAQILDEEKHIHVLINNAGQGGILNRITKD 71
S +E A + + L++ + G+L +I +
Sbjct: 25 SFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.363
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,738
Number of extensions: 10217
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 36
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)