BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13144
(1031 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 707 RPECVMNSECPSNEACINEKCGDP 730
RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 391 RPECVLNNDCPSNKACIKYKCKNP 414
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 849 RPECTVNTDCPLDKACVNQKCVDP 872
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 496 RPECTVNTDCPLDKACFNQKCVDP 519
RPEC +N+DCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 76 RPECTVNSDCPLDKSCQNQKCADP 99
RPEC +NSDCP +++C NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 274 RPECTVNSDCPLDKSCQNQKCADP 297
RPEC +NSDCP +++C NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 187 RPECIQNSECPYDKACINEKCAD 209
RPEC+ NS+CP ++AC+N+KC D
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRD 23
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 959 RPECIQNSECPFDKACIREKCIDP 982
RPEC+ NS+CP ++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 810 PECILNNDCPSNKACIRNK 828
PEC+LN+DCPSN+AC+ K
Sbjct: 2 PECVLNSDCPSNQACVNQK 20
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 631 RPECTVNTDCPLDKACFNQK 650
RPEC +N+DCP ++AC NQK
Sbjct: 1 RPECVLNSDCPSNQACVNQK 20
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound "1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Biaryl Pyrrolidin-2-Ones Incorporating Basic Heterocyclic
Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine P4
Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
Length = 134
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 88
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 89 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In Complex
With Ecotin M84r
Length = 138
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 93
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 94 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 129
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 50
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 51 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 86
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 48
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 49 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 84
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 49
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 50 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 85
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 88
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 89 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 50
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C S +C+C G+ + D C P P
Sbjct: 51 --GDC--DQFCHEEQASVVCSCARGYTLADNGKACIPTGP 86
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+ C SPC +C+D G +C+CL F G NC E C D
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 48
Query: 983 CPGSCGYNALCKVINHSPICTCPDGF-VGDAFSGCYPKPP 1021
G C + C +S +C+C G+ + D C P P
Sbjct: 49 --GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.507
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,386,486
Number of Sequences: 62578
Number of extensions: 1622602
Number of successful extensions: 3301
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2595
Number of HSP's gapped (non-prelim): 729
length of query: 1031
length of database: 14,973,337
effective HSP length: 109
effective length of query: 922
effective length of database: 8,152,335
effective search space: 7516452870
effective search space used: 7516452870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)