RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13144
(1031 letters)
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 50.5 bits (120), Expect = 3e-06
Identities = 52/382 (13%), Positives = 69/382 (18%), Gaps = 56/382 (14%)
Query: 103 TCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYS 162
NA + + C G T + + V S
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDC--DGVQINVPITFQVKVTATECIQEQS 403
Query: 163 QCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFCPPGTTGS 222
G + CR + S C C C G G
Sbjct: 404 FVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICR------CDTGYIGK 457
Query: 223 PFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSD 282
C+ C C + C
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYC----- 512
Query: 283 CPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPLQYLMPN 342
C C CG CRC GF G C N
Sbjct: 513 -----ECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGS---ACQCERTTEGCLN 562
Query: 343 NAPMNVPPISAVETPVLEDTCNCAPNAVCKDEVCVCLPDFYGDG---YVSCRPECVLNND 399
C+ C+ VC C + C C
Sbjct: 563 P-----------------RRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYIS 605
Query: 400 CPSNKACIK--------YKCKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGN--PFVLC 449
C K C +S +G C + S C T +
Sbjct: 606 CAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLEQQDGMDR 662
Query: 450 KPVQNEPVYTNPCHPSPCGPNS 471
+ + P CG N
Sbjct: 663 YLIYVDESRECVAGPDGCGENL 684
Score = 45.5 bits (107), Expect = 8e-05
Identities = 45/341 (13%), Positives = 67/341 (19%), Gaps = 45/341 (13%)
Query: 523 TCGQNANCRVINHSPICTCKPGFTGDAL--AYCNRIPLSNYVFEKILIQLMYCPGTTGNP 580
NA + + C G T C+ + ++ + ++ + C
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSF- 404
Query: 581 FVLCKLVQNEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDC 640
+ + +V Q C C C
Sbjct: 405 ----------------VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGIC 448
Query: 641 PLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYI 700
D + C LE C C C + +
Sbjct: 449 RCDTGYIGKNCECQTQGRSSQELE------GSCRKDNNSIICSGLGDCVCGQCLCHTSDV 502
Query: 701 GAPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDP 760
C C C CG C C GF G
Sbjct: 503 PGKLIYGQYCE----------CDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGS- 549
Query: 761 FTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDG---YVSCGPECILNND 817
+C + + C CR VC C Y C C
Sbjct: 550 --ACQ--CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYIS 605
Query: 818 CPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDC 858
C + F K +C + P C
Sbjct: 606 CAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSE 646
Score = 42.4 bits (99), Expect = 7e-04
Identities = 54/374 (14%), Positives = 96/374 (25%), Gaps = 65/374 (17%)
Query: 78 ECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIP 137
+ T +S C + +NQ D +V + C + F + + +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 138 PPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECP 197
PQ + S C C C YIG NC + S
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFL----ECGICRCDTGYIG--KNCECQTQGRSSQE 470
Query: 198 YDKACINEKCADPCPGF---------CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPN 248
+ +C + + C G C + + + + CG
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530
Query: 249 SQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANC 308
+ + C C P + GS +CQ ++ + C +
Sbjct: 531 GRGLCFCGK--CRCHPGFEGS------------------ACQCERTTEGCLNPRRVECSG 570
Query: 309 KVINHSPICRCKAGFTGDPFTYCNRIPLQYLMPNNAPMNVPPISAVETPVLEDTCNCAPN 368
+ +C C +G+ C P C
Sbjct: 571 RGRCRCNVCECHSGYQLP---LCQECP------------------------GCPSPCGKY 603
Query: 369 AVCKDEVCVCLPDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKN--PCVSGTCGEGAIC 426
C E +G + P L+N+ + C + + + +G
Sbjct: 604 ISCA-ECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDR 662
Query: 427 DVINHAVSCNCPAG 440
+I S C AG
Sbjct: 663 YLIYVDESRECVAG 676
Score = 39.3 bits (91), Expect = 0.007
Identities = 41/280 (14%), Positives = 64/280 (22%), Gaps = 39/280 (13%)
Query: 734 SCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGV 793
+NA + T C +G + P+ +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKV-TATECIQEQSF 404
Query: 794 CVCLPDYYGDGYVSCGP--ECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPE 851
+ + V P EC + C F + +C C Y G C+ +
Sbjct: 405 VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ 464
Query: 852 CTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPP 911
+ + N + G C C C I
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDC----------VCGQCLCHTSDVPGKLIYGQYCEC 514
Query: 912 PPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFD 971
CG + G C C P F G C +C
Sbjct: 515 DTI------NCERYNGQVCGGPGRGLCFCG--KCRCHPGFEG--SAC--------QCERT 556
Query: 972 KACIREKCIDPCPGSCGYNALCKVINHSPICTCPDGFVGD 1011
E C++P C C+ +C C G+
Sbjct: 557 T----EGCLNPRRVECSGRGRCR----CNVCECHSGYQLP 588
Score = 38.2 bits (88), Expect = 0.017
Identities = 39/274 (14%), Positives = 72/274 (26%), Gaps = 43/274 (15%)
Query: 276 ECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIP 335
+ T +S C + +NQ D +V + C + F + + +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 336 LQYLMPNNAPMNVPPISAVETPVLEDTCNCAPNAVCKDEVCVCLPDFYGDGYVSCRPECV 395
+Q L D C + +C C + G +C +
Sbjct: 417 VQVLPQCECRCRDQS---------RDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQ 464
Query: 396 LNNDCPSNKACIKYKCKNPCVS-GTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQN 454
+ +C K C G C G C C + + +
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCG----------QCLCHTSDVPGKLIYGQYCEC 514
Query: 455 EPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQ 514
+ + + CG + + C C P + GS AC +
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGS------------------ACQCE 554
Query: 515 KCVDPCPGTCGQNANCRVINHSPICTCKPGFTGD 548
+ + C + R +C C G+
Sbjct: 555 RTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLP 588
Score = 37.8 bits (87), Expect = 0.022
Identities = 41/316 (12%), Positives = 68/316 (21%), Gaps = 56/316 (17%)
Query: 673 CIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGDPCP 732
C I + R + +C D
Sbjct: 373 QPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSR 432
Query: 733 GSCGYNAECKIINHTPICTCPDGFIG---DPFTSCSPKPPEPVQPVIQEDTCNCVPNAEC 789
+ + + IC C G+IG + T ++ C +C
Sbjct: 433 DRSLCHGKGFLECG--ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC 490
Query: 790 RDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQA----VCSCLPNYFGSP 845
G C+C + +C + + C C P + GS
Sbjct: 491 VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS- 549
Query: 846 PACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIR 905
AC ++ + C + R VC C G+
Sbjct: 550 -----------------ACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLP---L 589
Query: 906 CSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIG-------APPNC 958
C + P PSPCG C + G
Sbjct: 590 CQE--------------CPGCPSPCGKYISCAE-----CLKFEKGPFGKNCSAACPGLQL 630
Query: 959 RPECIQNSECPFDKAC 974
++ C +
Sbjct: 631 SNNPVKGRTCKERDSE 646
Score = 35.8 bits (82), Expect = 0.070
Identities = 60/407 (14%), Positives = 88/407 (21%), Gaps = 99/407 (24%)
Query: 142 PQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKA 201
+P+ + Y S C R+ C I P + +
Sbjct: 348 DHNALPDTLKVTYDSFCSNGVTHRNQPR---GDCDGVQINVPITFQVKVTATECIQEQSF 404
Query: 202 CINEKCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCS 261
I G T VQ P S C +C
Sbjct: 405 VI-----------RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE----CGICR 449
Query: 262 CLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKA 321
C Y G C + + + D C +C C C
Sbjct: 450 CDTGYIG------KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----VCGQCLCHT 499
Query: 322 GFTGDPFTYCNRIPLQYLMPNNAPMNVPPISAVETPVLEDTCNCAPNAVCKDEVCVCLPD 381
Y + V C +C C C P
Sbjct: 500 SDVPGKLIYGQYCECDTINCERYNGQV--------------CGGPGRGLCFCGKCRCHPG 545
Query: 382 FYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGT 441
F G +C +C + N ++ + C C C +G
Sbjct: 546 FEGS---AC--QCERTTEGCLNPRRVECSGRGRCRCNVC---------------ECHSGY 585
Query: 442 TGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTV 501
LC+ P PSPCG C E FG
Sbjct: 586 QLP---LCQ--------ECPGCPSPCGKYISCAE-----CLKFEKGPFGK---------- 619
Query: 502 NTDCPLDKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGD 548
+C AC + + C+ + C +T +
Sbjct: 620 --NC--SAACPGLQLSNNPVKGR----TCKERD---SEGCWVAYTLE 655
Score = 32.8 bits (74), Expect = 0.75
Identities = 49/310 (15%), Positives = 63/310 (20%), Gaps = 61/310 (19%)
Query: 17 CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACR 76
G T VQ P S C +C C Y G
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE----CGICRCDTGYIG------ 456
Query: 77 PECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRI 136
C + + + D C +C C C Y
Sbjct: 457 KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----VCGQCLCHTSDVPGKLIY---- 508
Query: 137 PPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSEC 196
E CG + G C C P + GS C +
Sbjct: 509 ---GQYCECDTINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQC-ERTTEGCLN 562
Query: 197 PYDKACINEKCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNH 256
P C C G +C P PSPCG C E
Sbjct: 563 PRRVECSGRGRCRCNVCECHSGYQLPLCQEC-----------PGCPSPCGKYISCAE--- 608
Query: 257 QAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPI 316
FG K+C + CK +
Sbjct: 609 --CLKFEKGPFG------------------KNCSAACPGLQLSNNPVKGRTCKERD---S 645
Query: 317 CRCKAGFTGD 326
C +T +
Sbjct: 646 EGCWVAYTLE 655
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 41.6 bits (96), Expect = 5e-04
Identities = 22/178 (12%), Positives = 32/178 (17%), Gaps = 6/178 (3%)
Query: 96 CADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYP 155
+ T N +++ C C G C C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXA-----CGE 58
Query: 156 SPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFC 215
+ C C+ Y C + Q C C +
Sbjct: 59 FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC-IVEYLSEIQSAG 117
Query: 216 PPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPAC 273
G CQ N C V C C+ +
Sbjct: 118 CSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN 175
Score = 31.9 bits (71), Expect = 0.75
Identities = 23/174 (13%), Positives = 40/174 (22%), Gaps = 7/174 (4%)
Query: 727 CGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPN 786
+ N + +++ C C +G + +C E + + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCE----EXNECXXETLGXACGEF 59
Query: 787 AECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPP 846
+C + + Y C L D C + C
Sbjct: 60 GQCIENPDPAQVNMYX---CGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 847 ACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTG 900
C + + C N C + C C GFT
Sbjct: 117 GCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 30.0 bits (66), Expect = 2.8
Identities = 15/119 (12%), Positives = 26/119 (21%), Gaps = 4/119 (3%)
Query: 869 CVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPS 928
+ N ++++ C C G C + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGX----ACGEF 59
Query: 929 PCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSC 987
+ C C+ + C + Q C CI E + C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC 118
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.0 bits (98), Expect = 0.001
Identities = 52/317 (16%), Positives = 78/317 (24%), Gaps = 41/317 (12%)
Query: 705 NCRPECVMNSECPSNEACINEKCGDPCPGSCGYNA-ECKIINHTPICTCPDGFIGDPFTS 763
+ C+ N P ++C+ K GD S C P GF
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 764 CSPKPPEPVQPVIQEDTCNCVP-NAECRDGVCVCLPDYYGD--------GYVSCGPECIL 814
+ Q + ++ C N GVC C P + G S EC
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSP 488
Query: 815 NN---DCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVD 871
C C+ + C C + FG C C + CV
Sbjct: 489 REGQPVCSQRGECLCGQ------CVCHSSDFG--KITGKYC----------ECDDFSCVR 530
Query: 872 PCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCG 931
C + C C C +TG C+ +
Sbjct: 531 YKGEMCSGHGQC----SCGDCLCDSDWTGY---YCNCTTRTDTCMSSNGLLCSGRGKCEC 583
Query: 932 PNSQCRDINGS-PSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSC-GY 989
+ C +C PT + EC++ + C C
Sbjct: 584 GSCVCIQPGSYGDTCEKCPTCPD-ACTFKKECVECKKFDRGALHDENTCNRYCRDEIESV 642
Query: 990 NALCKVINHSPICTCPD 1006
L + CT +
Sbjct: 643 KELKDTGKDAVNCTYKN 659
Score = 41.2 bits (96), Expect = 0.002
Identities = 42/293 (14%), Positives = 64/293 (21%), Gaps = 30/293 (10%)
Query: 630 CRPECTVNTDCPLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGG 689
C N P K+C K D S + P+ + +
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 690 SPSCSCLPNYIGAPPNCRPE----CVMNSECPSNEACINEKCG-DPCPGSCGYNAECKII 744
+ C C P + R C + +C EC
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 745 NHTPI-----------CTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGV 793
P+ C C G ++ C + +C G
Sbjct: 490 EGQPVCSQRGECLCGQCVCHSSDFGK---ITGKYCECDDFSCVRYKGEMCSGHGQCSCGD 546
Query: 794 CVCLPDYYGDGYVSCG-PECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPEC 852
C+C D+ G C + C + C C+ C
Sbjct: 547 CLCDSDWTGY---YCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGS-YGDTCEKCP 602
Query: 853 TVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAV----CNCKPGFTGE 901
T C K CV C G+ C + + G
Sbjct: 603 TCPDACTFKKECVE--CKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAV 653
Score = 39.3 bits (91), Expect = 0.007
Identities = 57/367 (15%), Positives = 87/367 (23%), Gaps = 81/367 (22%)
Query: 540 TCKPGFTGDALAYCNRIPLSNYVFEKILIQLMYCPGTTGNPFVLCKLVQNEPVYTNPCQP 599
TC L C + + + V I ++ CP F + + + +
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 600 SPCGPNSQCREVNHQA----------VCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQ 649
C +Q +H+ VC C P + GS C + +
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGS------------QCECSEEDYRP 480
Query: 650 KCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPE 709
D C P C +C C C + G
Sbjct: 481 SQQDECSPREGQP--------------VCSQRGECLC----GQCVCHSSDFG--KITGKY 520
Query: 710 CVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPP 769
C C + C C + +C C C + G C+
Sbjct: 521 C----------ECDDFSCVRYKGEMCSGHGQC----SCGDCLCDSDWTGY---YCN--CT 561
Query: 770 EPVQPVIQEDTCNCVPNAECRDGVCVCL-PDYYGDGYVSCGPECILNNDCPSNKACIRNK 828
+ + C +C G CVC+ P YGD +C + C K C
Sbjct: 562 TRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD---TCEKCPTCPDACTFKKEC---- 614
Query: 829 FNKQAVCSCLPNYFG---SPPACRPECT---VNTDCPLDKACVNQKCVDPCPGSCGQNAN 882
C G C C + D C C
Sbjct: 615 ------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQ 668
Query: 883 CRVINHN 889
+
Sbjct: 669 YYEDSSG 675
Score = 32.0 bits (72), Expect = 1.1
Identities = 38/213 (17%), Positives = 51/213 (23%), Gaps = 29/213 (13%)
Query: 806 VSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACV 865
+S C+ N P K+C+ K S G P T+ D V
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 866 NQKCVDPCPGSCGQNANCRVINHNA------VCNCKPGFTGEPRIRCSKIPPPPPPQDVP 919
C N N+ VC C PG+ G +C P
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGS---QCECSEEDYRPSQQD 484
Query: 920 EYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKC 979
E C +C C C + G C C C
Sbjct: 485 ECSPREGQPVCSQRGECLCGQ----CVCHSSDFG--KITGKYC----------ECDDFSC 528
Query: 980 IDPCPGSCGYNALCKVINHSPICTCPDGFVGDA 1012
+ C + C C C + G
Sbjct: 529 VRYKGEMCSGHGQC----SCGDCLCDSDWTGYY 557
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 40.9 bits (96), Expect = 0.001
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 671 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECVMNSECPSNEACINEKC 727
+PCI PC C+D +C+C P Y G+ NC + EC C+ +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 728 GDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSP 766
C + GY P C G + +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 37.0 bits (86), Expect = 0.023
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
+PCI PC N C+D +C+C P + G+ NC E +N P + C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 983 -----CPGSCGYNALCKVINHSPICTCPDG 1007
C + GY P C G
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 35.5 bits (82), Expect = 0.075
Identities = 22/99 (22%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 408 KYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPC 467
+YK +PC+S C C +C C G G N + N CHP
Sbjct: 1 RYKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEG---------SNCELAKNECHPERT 51
Query: 468 GPNSQ-CREVNHQAVCSCLPNYFGSPPACRPECTVNTDC 505
C CSC Y + C
Sbjct: 52 DGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 35.1 bits (81), Expect = 0.090
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 4/100 (4%)
Query: 151 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADP 210
+PC PC C+D +C+C P Y GS NC E +N P C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 211 CPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQ 250
+ G + +
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 35.1 bits (81), Expect = 0.11
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 17/100 (17%)
Query: 871 DPCPGS-CGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSP 929
PC C N +C+ C C PG+ G C N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCELA------------KNECHPER 50
Query: 930 CGPNSQ-CRDINGSPSCSCLPTFIGAPPNCRPECIQNSEC 968
C S +CSC + + + C
Sbjct: 51 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 33.5 bits (77), Expect = 0.31
Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 22/105 (20%)
Query: 40 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQ--NQKCA 97
+PC PC N C++ C+C P Y G +C+ +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG------------------SNCELAKNECH 47
Query: 98 DPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPP 142
C C S C C G+
Sbjct: 48 PERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 33.1 bits (76), Expect = 0.43
Identities = 22/103 (21%), Positives = 29/103 (28%), Gaps = 13/103 (12%)
Query: 595 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDP 654
+PC PC N C++ C+C P Y GS C E N P C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 655 -----CPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPS 692
C + L + P CG
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGV----LTSEKRAP 100
Score = 32.8 bits (75), Expect = 0.51
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 783 CVPNAECRDGV----CVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCL 838
C+ N C+D + C C P Y G EC C+ + + CSC
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY--TCSCA 70
Query: 839 PNYFGSPPACRPECTVNTDC 858
Y + C
Sbjct: 71 QGYRLGEDHKQCVPHDQCAC 90
Score = 32.0 bits (73), Expect = 0.89
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 460 NPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDP 519
+PC PC N C++ C+C P Y GS +C +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS------------NC----ELAKNECHPE 49
Query: 520 CPGTCGQNANCRVINHSPICTCKPGFT 546
C C S C+C G+
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYR 74
Score = 32.0 bits (73), Expect = 0.97
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 22/89 (24%)
Query: 238 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQ--NQKCA 295
+PC PC N C++ C+C P Y G +C+ +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG------------------SNCELAKNECH 47
Query: 296 DPCPGTCGQNANCKVINHSPICRCKAGFT 324
C C S C C G+
Sbjct: 48 PERTDGCQH--FCLPGQESYTCSCAQGYR 74
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A
2box_A
Length = 143
Score = 39.0 bits (91), Expect = 0.002
Identities = 31/148 (20%), Positives = 46/148 (31%), Gaps = 19/148 (12%)
Query: 870 VDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSP 929
C C Q+++C + C C PGF+ I P D+ E
Sbjct: 2 SRGCARWCPQDSSC---VNATACRCNPGFSSFSEIIT---TPMETCDDINECATL-SKVS 54
Query: 930 CGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPC---PGS 986
CG S C + GS C C P + + + C + +D C
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC---------QDVDECSSGQHQ 105
Query: 987 CGYNALCKVINHSPICTCPDGFVGDAFS 1014
C + +C S C C G+
Sbjct: 106 CDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 34.0 bits (78), Expect = 0.082
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 869 CVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPS 928
C SCG+ ++C + C C PG+ + K QDV E +
Sbjct: 47 CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG--QH 104
Query: 929 PCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECI 963
C ++ C + GS SC C P + +
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 33.6 bits (77), Expect = 0.13
Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 18/148 (12%)
Query: 46 PCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCG 105
C +S C C C P + D +CA +CG
Sbjct: 8 WCPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDI--------NECATLSKVSCG 56
Query: 106 QNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPC--YPSPCGPYSQ 163
+ ++C S C C G+ + E+ + V+ C C +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPV-----SGAKTFKNESENTCQDVDECSSGQHQCDSSTV 111
Query: 164 CRDINGSPSCSCLPSYIGSPPNCRPECI 191
C + GS SC C P + +
Sbjct: 112 CFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 28.6 bits (64), Expect = 5.6
Identities = 28/151 (18%), Positives = 40/151 (26%), Gaps = 25/151 (16%)
Query: 677 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEAC--INEKCGDPCPGS 734
C S C + +C C P + E C INE C S
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITT---------PMETCDDINE-CATLSKVS 54
Query: 735 CGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVI---QEDTCNCVPNAECRD 791
CG ++C + C C G+ E + C + C +
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 792 GV----CVCLPDYYGDGYVSCGPECILNNDC 818
V C C P + P + C
Sbjct: 115 TVGSYSCRCRPGWKPRH---GIPNNQKDTVC 142
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.8 bits (95), Expect = 0.002
Identities = 53/284 (18%), Positives = 82/284 (28%), Gaps = 45/284 (15%)
Query: 150 VNPCYPSPCGPYSQCRDI-NGSPSC-SCLPSYIGSPPNCRP--ECIQNSECPYDKACINE 205
+ C +PC P +QC +GS SC C ++G+ +C EC + + +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 206 KCADPCPGF----CPPGTTGSPFVQCKPIVHEPVYTNPCQP--------SPCGPNSQCRE 253
+C + PGF CPP G + C+P C +++C
Sbjct: 62 RCVNTQPGFHCLPCPPRYRG-NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120
Query: 254 VNHQAV----CSCLPNYFGSPPACRPE------CTVNSDCPLDKSCQNQKCADPCPGTCG 303
+ H + C C Y G C + +N C + + K P G
Sbjct: 121 LGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSG 180
Query: 304 QNA--NCKVINHSPICRCKAGFTGDPFTYCNRIPLQYLMPNNAPMNVPPISAVETPVLED 361
Q + + G T + E D
Sbjct: 181 QEDFDKDGIGDACDDDDDNDGVTDEKDN----------CQLLFNPRQADYDKDEVGDRCD 230
Query: 362 TCNCAPNAVCKD-----EVCVCLPDFYGDGYVSCRPECVLNNDC 400
C N D E C D GD + R C +
Sbjct: 231 NCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNT 274
Score = 40.8 bits (95), Expect = 0.003
Identities = 47/317 (14%), Positives = 72/317 (22%), Gaps = 38/317 (11%)
Query: 39 TNPCQPSPCGPNSQCREVNHQAV--CSCLPNYFGSPPACRP--ECTVNSDCPLDKSCQNQ 94
+ C +PC P +QC + C + G+ C EC + D S
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 95 KCADPCPG-TCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPC 153
+C + PG C C + G+ Q PE
Sbjct: 62 RCVNTQPGFHCLP--------------CPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 154 YPSPCGPYSQC----RDINGSPSCSCLPSYIGSPPNCRPE------CIQNSECPYDKACI 203
C +++C + C C Y G C + N C +
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYH 167
Query: 204 NEKCADPCPGFCPPGTTGSPFVQ--CKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAV-- 259
K P + C T+ N + + + V
Sbjct: 168 CIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGD 227
Query: 260 -CSCLPNYFGSPPACRPECTVNSDCPLDK---SCQNQKCADPCPGTCGQNANCKVINHSP 315
C P C +D N++ P Q
Sbjct: 228 RCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDH 287
Query: 316 ICRCKAGFTGDPFTYCN 332
C D N
Sbjct: 288 CDNCPLVHNPDQTDVDN 304
Score = 40.8 bits (95), Expect = 0.003
Identities = 56/364 (15%), Positives = 91/364 (25%), Gaps = 48/364 (13%)
Query: 670 VNPCIPSPCGPYSQCRDI-GGSPSC-SCLPNYIGAPPNCRP--ECVMNS----ECPSNEA 721
+ C+ +PC P +QC GS SC C ++G +C EC +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 722 CINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPV------ 775
C+N + G C CP + G+ + + + V
Sbjct: 63 CVNTQPGFHCL------------------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENP 104
Query: 776 IQEDTCNCVPNAECR--------DGVCVCLPDYYGDGYV----SCGPECILNNDCPSNKA 823
++ T NC +AEC C C Y GDG + S N + A
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNA 164
Query: 824 CIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANC 883
+ C + D + + P +
Sbjct: 165 TYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYD-KD 223
Query: 884 RVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSP 943
V + C + D + N P N+ RD +G
Sbjct: 224 EVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDG 283
Query: 944 SCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSCGYNALCKVINHSPICT 1003
N + N + D + + N +
Sbjct: 284 VGDHCDNCPLV-HNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQD--NCPYISNANQADH 340
Query: 1004 CPDG 1007
DG
Sbjct: 341 DRDG 344
Score = 33.5 bits (76), Expect = 0.47
Identities = 65/413 (15%), Positives = 108/413 (26%), Gaps = 42/413 (10%)
Query: 413 NPCVSGTCGEGAIC-DVINHAVSC-NCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPN 470
+ C+S C GA C + + SC CP G GN C+ + + + C
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFS--TSKV 60
Query: 471 SQCREVNHQAVC-SCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCP---GTCGQ 526
+C C C P Y G+ P T+ + + +PC C +
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE------PENPCKDKTHNCHK 114
Query: 527 NANC----RVINHSPICTCKPGFTGDALAYCNRIPLSNYVFEKILIQLMYCPGTTGNPFV 582
+A C + C C+ G+ GD L L + ++ +
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174
Query: 583 LCKLVQNEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPL 642
E + + + + + C L N + +CP
Sbjct: 175 HLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPY 234
Query: 643 -DKACFNQKCVDPCPDSPPPPLESPPEYVN----PCIPSPCGPYSQCRDIGGSPSCSCLP 697
+ D+ ++ + P + + D G +C
Sbjct: 235 VHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQ-RDTDGDGVGDHCDNCPL 293
Query: 698 NYIGAPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFI 757
N V N + D + I N DG
Sbjct: 294 V-----HNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQD--NCPYISNANQADHDRDG-Q 345
Query: 758 GDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDG-----VCVCLPDYYGDGY 805
GD P D C V N + D +C D+ D
Sbjct: 346 GDACDPDDDNDGVP----DDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNI 394
Score = 30.8 bits (69), Expect = 2.7
Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 23/213 (10%)
Query: 16 SCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVC-SCLPNYFGSPPA 74
CP G G+ C+ + + + C +C C C P Y G+ P
Sbjct: 29 FCPVGFLGNGT-HCEDLDECALVPDICF--STSKVPRCVNTQPGFHCLPCPPRYRGNQPV 85
Query: 75 CRPECTVNSDCPLDKSCQNQKCADPCP---GTCGQNANC----KVINHSPICRCKAGFTG 127
++ + + +PC C ++A C + C C+ G+ G
Sbjct: 86 GVGLEAAKTEKQVC------EPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
Query: 128 DPF-----TYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSC-SCLPSYIG 181
D + + P P P S D + +C
Sbjct: 140 DGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDN 199
Query: 182 SPPNCRPECIQNSECPYDKACINEKCADPCPGF 214
+ Q P ++ D C
Sbjct: 200 DGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNC 232
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 40.1 bits (93), Expect = 0.003
Identities = 26/154 (16%), Positives = 40/154 (25%), Gaps = 18/154 (11%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
C + G +C+ I G+ C+C Y C +EC C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQ----- 55
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGDP-FTSCSPKPPEPVQPVIQEDTCNCVPNAE 788
C C C G+ P SC PEPV V
Sbjct: 56 ----------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 789 CRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNK 822
+ + + E + +D ++
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 39.0 bits (90), Expect = 0.006
Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSY--IGSPPNCR--PECIQNSECPYDKACINE 205
C + G +C+ I G+ C+C Y C+ EC + C C N
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNS 60
Query: 206 KCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPN 265
+ A C +C G P + P + + + L N
Sbjct: 61 EGAFQC--WCEAGYELRPD-RRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 266 YFGSPPACRPECTVNSDCPLDK 287
R E SD LD+
Sbjct: 118 AIALDFHHRRELVFWSDVTLDR 139
Score = 34.7 bits (79), Expect = 0.13
Identities = 20/137 (14%), Positives = 33/137 (24%), Gaps = 17/137 (12%)
Query: 39 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCAD 98
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 99 PCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPC 158
G C Q C + C C+AG+ P + P P
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 159 GPYSQCRDINGSPSCSC 175
Y+ + +
Sbjct: 106 SEYTLLLNNLENAIALD 122
Score = 34.7 bits (79), Expect = 0.13
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 922 VNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCID 981
C + G +C+ I G+ C+C + C +EC + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYC------- 53
Query: 982 PCPGSCGYNALCKVINHSPICTCPDGFVGD 1011
+ C + C C G+
Sbjct: 54 --------SQGCTNSEGAFQCWCEAGYELR 75
Score = 34.4 bits (78), Expect = 0.19
Identities = 19/141 (13%), Positives = 33/141 (23%), Gaps = 16/141 (11%)
Query: 870 VDPC-PGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPC-IP 927
+ C + G C++I C C G+ R + VN C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT------------CQDVNECAEE 50
Query: 928 SPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSC 987
C C + G+ C C + P + + I + + P
Sbjct: 51 GYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEY 108
Query: 988 GYNALCKVINHSPICTCPDGF 1008
+
Sbjct: 109 TLLLNNLENAIALDFHHRREL 129
Score = 34.0 bits (77), Expect = 0.28
Identities = 23/144 (15%), Positives = 31/144 (21%), Gaps = 7/144 (4%)
Query: 413 NPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQ 472
C G C +I AV C C G NE C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 473 CREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRV 532
C C C Y P + L + + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 533 INHSPICTCKPGFTGDALAYCNRI 556
+ + + +RI
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRI 140
Score = 30.9 bits (69), Expect = 2.4
Identities = 24/139 (17%), Positives = 36/139 (25%), Gaps = 14/139 (10%)
Query: 594 TNPCQPSPCGPNSQCREVNHQAVCSCLPNY----FGSPPACRPECTVNTDCPLDKACFNQ 649
C + G +C+ + C+C Y G EC C + C N
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCS--QGCTNS 60
Query: 650 KCVDPCPDSPPPPLES--------PPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 701
+ C L PE V + + L N I
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 702 APPNCRPECVMNSECPSNE 720
+ R E V S+ +
Sbjct: 121 LDFHHRRELVFWSDVTLDR 139
Score = 30.5 bits (68), Expect = 3.0
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 459 TNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVD 518
C+ + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 519 PCPGTCGQNANCRVINHSPICTCKPGFTGD 548
G C Q C + C C+ G+
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELR 75
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 39.9 bits (92), Expect = 0.004
Identities = 38/233 (16%), Positives = 52/233 (22%), Gaps = 51/233 (21%)
Query: 93 NQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNP 152
N++C D CPGT NC + + + ++C ++ P
Sbjct: 152 NEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 153 CYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCP 212
C C S P C AC N C
Sbjct: 208 C----------------HSECLGNCSQPDDPTKCV-------------ACRNFYLDGRCV 238
Query: 213 GFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPA 272
CPP + + + Y
Sbjct: 239 ETCPPPY---------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK 283
Query: 273 CRPECTVNSDCPLD-KSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFT 324
C PEC C C PCP C K I+ + G T
Sbjct: 284 CIPECPSGYTMNSSNLLC--TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 38.0 bits (87), Expect = 0.016
Identities = 39/195 (20%), Positives = 56/195 (28%), Gaps = 27/195 (13%)
Query: 595 NPCQPSPCGPNSQCREV--NHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKAC----FN 648
N C +S C++V C C C+ D AC +
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 234
Query: 649 QKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGG---SPSCSCLPNYIGAPPN 705
+CV+ CP PP Y C +S C+D+ + Y+
Sbjct: 235 GRCVETCP---------PPYYHFQ--DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK 283
Query: 706 CRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPI------CTCPDGFIGD 759
C PEC S+ C PCP C K I+ CT +G +
Sbjct: 284 CIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLII 342
Query: 760 PFTSCSPKPPEPVQP 774
+ E
Sbjct: 343 NIRGGNNLAAELEAN 357
Score = 36.4 bits (83), Expect = 0.055
Identities = 38/224 (16%), Positives = 54/224 (24%), Gaps = 32/224 (14%)
Query: 808 CGPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQ 867
CG C C N Q V C + C C + C + C +
Sbjct: 155 CGDIC--PGTAKGKTNCPATVINGQFVERCWTHSHCQKV-CPTICKSH-GCTAEGLCCHS 210
Query: 868 KCVDPC--PGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPC 925
+C+ C P + CR + C C PP C
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRC----------VETC-------PPPYYHFQDWRC 253
Query: 926 IPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPG 985
+ + ++ C PEC C+ PCP
Sbjct: 254 VN--FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPK 310
Query: 986 SCGYNALCKVINHSPI------CTCPDGFVGDAFSGCYPKPPER 1023
C K I+ CT +G + G E
Sbjct: 311 VCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAEL 354
Score = 35.3 bits (80), Expect = 0.13
Identities = 34/192 (17%), Positives = 48/192 (25%), Gaps = 25/192 (13%)
Query: 724 NEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNC 783
NE+CGD CPG+ C + + C P + C
Sbjct: 152 NEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 784 VPNAECRDGVC---------VCLPDYYGDGYVSCGPEC------ILNNDCPSNKACIR-N 827
++EC C Y C C + C + C +
Sbjct: 208 -CHSECLGNCSQPDDPTKCVACRNFYLDG---RCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 828 KFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVIN 887
K + Y C PEC C+ PCP C + I+
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTID 322
Query: 888 HNAVCNCKPGFT 899
G T
Sbjct: 323 SVTSAQELRGCT 334
Score = 33.7 bits (76), Expect = 0.35
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 36 PVYTNPCQPSPCGPNSQCREVNHQ---AVCSCLPNYFGSPPACRPECTVNSDCPLD-KSC 91
P Q C S C++++H+ + Y C PEC C
Sbjct: 242 PPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
Query: 92 QNQKCADPCPGTCGQNANCKVINHSPICRCKAGFT 126
C PCP C K I+ + G T
Sbjct: 302 T--PCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 32.2 bits (72), Expect = 1.1
Identities = 33/210 (15%), Positives = 43/210 (20%), Gaps = 47/210 (22%)
Query: 349 PPISAVETPVLEDTCNCAPNAVCKDE---VCVCLPDFYGDGY----VSCRPECVLNNDCP 401
P + +T N C VC G + C EC+ N P
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQP 219
Query: 402 SNK----ACIKYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPV 457
+ AC + CV CP
Sbjct: 220 DDPTKCVACRNFYLDGRCVE------------------TCPPPYYHFQ------------ 249
Query: 458 YTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLD-KACFNQKC 516
C + Y C PEC C C
Sbjct: 250 -DWRCV--NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC--TPC 304
Query: 517 VDPCPGTCGQNANCRVINHSPICTCKPGFT 546
+ PCP C + I+ G T
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 31.0 bits (69), Expect = 2.5
Identities = 30/180 (16%), Positives = 40/180 (22%), Gaps = 6/180 (3%)
Query: 61 VCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICR 120
+C + PA C CQ C C G A + +
Sbjct: 158 ICPGTAKGKTNCPATVINGQFVERCWTHSHCQKV-CPTICKS-HGCTAEGLCCHSECLGN 215
Query: 121 CKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDING---SPSCSCLP 177
C C E P P C +S C+D++ +
Sbjct: 216 CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCH 275
Query: 178 SYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFCPPGTTGSPFVQCKPIVHEPVYT 237
Y+ C PEC C PCP C T
Sbjct: 276 QYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 29.5 bits (65), Expect = 8.0
Identities = 34/161 (21%), Positives = 49/161 (30%), Gaps = 18/161 (11%)
Query: 513 NQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALAYCNRIPLSNYVFEKILIQLMY 572
N++C D CPGT NC + + C I S+ + L
Sbjct: 152 NEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE 211
Query: 573 CPGTTGNPF-----VLCKLVQNE-------PVYTNPCQPSPCGPNSQCREVNHQ---AVC 617
C G P V C+ + P Q C S C++++H+ +
Sbjct: 212 CLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271
Query: 618 SCLPNYFGSPPACRPECTVNTDCPLD-KACFNQKCVDPCPD 657
Y C PEC C C+ PCP
Sbjct: 272 QGCHQYVIHNNKCIPECPSGYTMNSSNLLC--TPCLGPCPK 310
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 37.6 bits (88), Expect = 0.005
Identities = 35/136 (25%), Positives = 46/136 (33%), Gaps = 36/136 (26%)
Query: 877 CGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQC 936
C C + C C G+TG RC VN C+ +PC ++ C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP---RCE------------IDVNECVSNPCQNDATC 59
Query: 937 RDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGS-CGYNALCKV 995
D G C C+P + G +C E D C S C +N C
Sbjct: 60 LDQIGEFQCICMPGYEG--VHC------------------EVNTDECASSPCLHNGRCLD 99
Query: 996 INHSPICTCPDGFVGD 1011
+ C CP GF G
Sbjct: 100 KINEFQCECPTGFTGH 115
Score = 33.0 bits (76), Expect = 0.18
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 153 CYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRP---ECIQNSECPYDKACINEKCAD 209
+PC +C + GS C CL Y G P C EC+ N C D C+++
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECVSNP-CQNDATCLDQIGEF 66
Query: 210 PCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 269
C C PG G V C+ V T+ C SPC N +C + ++ C C + G
Sbjct: 67 QC--ICMPGYEG---VHCE------VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 32.2 bits (74), Expect = 0.28
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 413 NPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQ 472
N CVS C A C C C G G V C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCE------VNTDECASSPCLHNGR 96
Query: 473 CREVNHQAVCSCLPNYFGS 491
C + ++ C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 31.8 bits (73), Expect = 0.43
Identities = 29/141 (20%), Positives = 41/141 (29%), Gaps = 35/141 (24%)
Query: 42 CQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCP 101
+PC +C C CL Y G P C ++ + + CQN
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG------PRCEIDVNECVSNPCQN-------- 55
Query: 102 GTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPY 161
+A C C C G+ G +C + C SPC
Sbjct: 56 -----DATCLDQIGEFQCICMPGYEG---VHCE-------------VNTDECASSPCLHN 94
Query: 162 SQCRDINGSPSCSCLPSYIGS 182
+C D C C + G
Sbjct: 95 GRCLDKINEFQCECPTGFTGH 115
Score = 29.9 bits (68), Expect = 2.2
Identities = 33/134 (24%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 415 CVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCR 474
+ C C + C C G TG C+ NE C +PC ++ C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG---PRCEIDVNE------CVSNPCQNDATCL 60
Query: 475 EVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRVIN 534
+ + C C+P Y G C VNTD C + N C
Sbjct: 61 DQIGEFQCICMPGYEGV------HCEVNTDECASSPCLH-------------NGRCLDKI 101
Query: 535 HSPICTCKPGFTGD 548
+ C C GFTG
Sbjct: 102 NEFQCECPTGFTGH 115
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 38.2 bits (89), Expect = 0.006
Identities = 29/145 (20%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
+ C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHE 97
Query: 210 PCPGF---CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNY 266
C G T + P P PCG + R A +
Sbjct: 98 EQNSVVCSCARGYTLA---------DNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGE 148
Query: 267 FGSPPACRPECTVNSDCPLDKSCQN 291
D +N
Sbjct: 149 APD-----SITWKPYDAADLDPTEN 168
Score = 36.3 bits (84), Expect = 0.028
Identities = 30/206 (14%), Positives = 51/206 (24%), Gaps = 44/206 (21%)
Query: 10 TYEVFYSCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYF 69
EVF ++ + C+ SPC +C++ + C+CL +
Sbjct: 22 AREVFEDSDKTNEFW---------NKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Query: 70 GSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDP 129
G E C + C +S +C C G+T
Sbjct: 73 GK----NCELFTRKLCS--------------LDNGDCDQFCHEEQNSVVCSCARGYTLA- 113
Query: 130 FTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRP- 188
D + P P PCG + R + +P
Sbjct: 114 ---------------DNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPY 158
Query: 189 ECIQNSECPYDKACINEKCADPCPGF 214
+ ++ P G
Sbjct: 159 DAADLDPTENPFDLLDFNQTQPERGD 184
Score = 32.4 bits (74), Expect = 0.42
Identities = 27/158 (17%), Positives = 36/158 (22%), Gaps = 34/158 (21%)
Query: 855 NTDCPLDKACVNQKCVDPC-PGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPP 913
++ K D C C C+ C C GF G+ C
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCEL----- 78
Query: 914 PPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKA 973
C + C + S CSC + A + CI P
Sbjct: 79 ------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP---- 126
Query: 974 CIREKCIDPCPGSCGYNALCKVINHSPICTCPDGFVGD 1011
CG L + T G D
Sbjct: 127 -------------CGKQTLERRKRSVAQATSSSGEAPD 151
Score = 32.0 bits (73), Expect = 0.61
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 27/168 (16%)
Query: 595 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDP 654
+ C+ SPC +C++ + C+CL + G E C LD +Q C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCSLDNGDCDQFCHEE 98
Query: 655 -----CPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPE 709
C + L + P P PCG + R + +P
Sbjct: 99 QNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKP- 157
Query: 710 CVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFI 757
+ + N T +
Sbjct: 158 ---YDAADLDP--------------TENPFDLLDFNQTQPERGDNNLT 188
Score = 31.6 bits (72), Expect = 0.73
Identities = 23/160 (14%), Positives = 42/160 (26%), Gaps = 32/160 (20%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ C SPC +C+D G +C+CL + G NC E C +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---------- 87
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAEC 789
+ + C ++ +C+C G+ + I C
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLA---DNG-------KACIPTGPYPCGKQTLE 133
Query: 790 RDGV----CVCLPDYYGDGYVSCGPECILNNDCPSNKACI 825
R D + + + +
Sbjct: 134 RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLL 173
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 15/83 (18%)
Query: 877 CGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQC 936
+ C ++ VC+C G+T K P P PCG +
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTLA---DNGK------------ACIPTGPYPCGKQTLE 133
Query: 937 RDINGSPSCSCLPTFIGAPPNCR 959
R + +
Sbjct: 134 RRKRSVAQATSSSGEAPDSITWK 156
Score = 30.1 bits (68), Expect = 2.7
Identities = 29/217 (13%), Positives = 53/217 (24%), Gaps = 41/217 (18%)
Query: 411 CKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPN 470
+ C+ TC +V + N+ + C SPC
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 471 SQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANC 530
+C++ + C+CL + G N + K C + C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGK----------NCELFTRKLCSLD--------NGDCDQFC 95
Query: 531 RVINHSPICTCKPGFTGDA----LAYCNRIPLSNYVFEKILIQLMYCPGTTGNPFVLCKL 586
+S +C+C G+T P E+ + ++G
Sbjct: 96 HEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPD---- 151
Query: 587 VQNEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNY 623
+ P + N N
Sbjct: 152 -SITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 36.2 bits (84), Expect = 0.019
Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 18/116 (15%)
Query: 93 NQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNP 152
C D G C + + N C + G + C +
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL--------------GK 83
Query: 153 CYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRP----ECIQNSECPYDKACIN 204
+ +PC C + +P EC + CIN
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 35.4 bits (82), Expect = 0.040
Identities = 26/147 (17%), Positives = 35/147 (23%), Gaps = 28/147 (19%)
Query: 866 NQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPC 925
CVD G+C + R N + C+ + G C +
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC-------------CSLGKA 84
Query: 926 IPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPG 985
+PC C F P EC PG
Sbjct: 85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNP--ITVILEDIDECQEL------------PG 130
Query: 986 SCGYNALCKVINHSPICTCPDGFVGDA 1012
C C S C CP G+ +
Sbjct: 131 LCQ-GGKCINTFGSFQCRCPTGYYLNE 156
Score = 35.4 bits (82), Expect = 0.040
Identities = 24/146 (16%), Positives = 37/146 (25%), Gaps = 13/146 (8%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
VN C C + GS C C P + +P ++ C D +
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDT 62
Query: 210 PCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 269
C G S C + +PC ++ +C + +
Sbjct: 63 ACS--NEIGVGVSKASCCCSL-------GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN 113
Query: 270 PPACRP----ECTVNSDCPLDKSCQN 291
P EC C N
Sbjct: 114 PITVILEDIDECQELPGLCQGGKCIN 139
Score = 32.7 bits (75), Expect = 0.27
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 19/95 (20%)
Query: 922 VNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCID 981
VN C+ + C + GS C C P F P C+D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 982 PCPGSCGYNALCKVINHSPICTCPDGFVGDAFSGC 1016
G+C + + N C+ G S C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 30.4 bits (69), Expect = 1.5
Identities = 25/163 (15%), Positives = 38/163 (23%), Gaps = 34/163 (20%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
VN C+ C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAEC 789
G+C + + N C+ G + C + + C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------CSLGKAWGTPCEMCPAV 95
Query: 790 RDGV----CVCLPDYYGDGY-VSCGP--ECILNNDCPSNKACI 825
C + + V EC CI
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 28.5 bits (64), Expect = 7.3
Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 26/135 (19%)
Query: 415 CVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCR 474
C+ T C + C+CP NP + V T C + + R
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPT------RVGCVDTRSG---NCYLDIRPR 56
Query: 475 EVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRVIN 534
N CS S +C C C
Sbjct: 57 GDNGDTACSNEIGVGVSKASC---CCSLGKA--------------WGTPCEMCPAVNTSE 99
Query: 535 HSPICTCKPGFTGDA 549
+ +C GF +
Sbjct: 100 YKILCPGGEGFRPNP 114
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 37.5 bits (86), Expect = 0.020
Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 8/135 (5%)
Query: 151 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNC---RPECIQNSECPYDKACINEKC 207
N C + G C D+ C C + EC C + C+N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEG 58
Query: 208 ADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYF 267
C C G P + V Y + ++ L N
Sbjct: 59 GYKC--QCEEGFQLDPHTKACKAVGSIAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 268 GSPPACRPECTVNSD 282
SD
Sbjct: 116 ALDTEVASNRIYWSD 130
Score = 37.1 bits (85), Expect = 0.029
Identities = 19/136 (13%), Positives = 30/136 (22%), Gaps = 18/136 (13%)
Query: 671 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGDP 730
N C+ + G C D+ C C + C EC + C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC-------- 49
Query: 731 CPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECR 790
+ C + C C +GF DP T +
Sbjct: 50 -------SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 791 DGVCVCLPDYYGDGYV 806
+ +
Sbjct: 103 EYTSLIPNLRNVVALD 118
Score = 33.7 bits (76), Expect = 0.29
Identities = 29/179 (16%), Positives = 48/179 (26%), Gaps = 20/179 (11%)
Query: 238 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADP 297
N C + G + C ++ C C + + C CQ+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---------QLVAQRRCEDIDECQD------ 45
Query: 298 CPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPLQYLMPNNAPMNVPPISAVETP 357
P TC Q C + C+C+ GF DP T + + ++
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 358 VLEDTCNCAPNAVCKDEVCVCLPDFYGDGYVSCRPECVLN--NDCPSNKACIKYKCKNP 414
N V D ++ D L+ + S I + P
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161
Score = 33.7 bits (76), Expect = 0.32
Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 18/136 (13%)
Query: 40 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADP 99
N C + G + C ++ C C + + C CQ+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---------QLVAQRRCEDIDECQD------ 45
Query: 100 CPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCG 159
P TC Q C + C+C+ GF DP T +
Sbjct: 46 -PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 160 PYSQCRDINGSPSCSC 175
Y+ +
Sbjct: 103 EYTSLIPNLRNVVALD 118
Score = 33.7 bits (76), Expect = 0.33
Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDP 982
N C+ + G + C D+ C C F C EC C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC-------- 49
Query: 983 CPGSCGYNALCKVINHSPICTCPDGFVGDAFSGCYPKPPERTMWD 1027
+ LC + C C +GF D +
Sbjct: 50 -------SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 87
Score = 33.7 bits (76), Expect = 0.34
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 17/135 (12%)
Query: 871 DPC-PGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSP 929
+ C + G + C + C C GF + RC +D+ E +P S
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC---------EDIDECQDPDTCSQ 51
Query: 930 CGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSCGY 989
C ++ G C C F P C + R + Y
Sbjct: 52 -----LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDRSEY 104
Query: 990 NALCKVINHSPICTC 1004
+L + +
Sbjct: 105 TSLIPNLRNVVALDT 119
Score = 33.3 bits (75), Expect = 0.40
Identities = 20/145 (13%), Positives = 31/145 (21%), Gaps = 20/145 (13%)
Query: 98 DPC-PGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCY-P 155
+ C G + C + C C GF C E ++ C P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC--------------EDIDECQDP 46
Query: 156 SPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFC 215
C C ++ G C C + P C Y +
Sbjct: 47 DTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 216 PPGTTGSPFVQCKPIVHEPVYTNPC 240
+ + E
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIY 127
Score = 32.9 bits (74), Expect = 0.51
Identities = 13/122 (10%), Positives = 27/122 (22%), Gaps = 5/122 (4%)
Query: 595 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPAC---RPECTVNTDCPLDKACFNQKC 651
N C + G + C ++ C C + EC C + C N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEG 58
Query: 652 VDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECV 711
C L+ + ++ ++ +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 712 MN 713
Sbjct: 119 TE 120
Score = 30.6 bits (68), Expect = 2.8
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 9/127 (7%)
Query: 413 NPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQ 472
N C+ G +C+ + C CP G C+ + C P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 473 CREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRV 532
C + C C + P V + L ++ + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 533 INHSPIC 539
N +
Sbjct: 112 RNVVALD 118
Score = 29.0 bits (64), Expect = 8.0
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 1/130 (0%)
Query: 729 DPC-PGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNA 787
+ C + G + C + C CPDGF C + N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 788 ECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPA 847
+C+ L + + + + ++ ++ L N
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 848 CRPECTVNTD 857
+D
Sbjct: 121 VASNRIYWSD 130
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 32.4 bits (73), Expect = 0.034
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 707 RPECVMNSECPSNEACINEKCGDP 730
RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.13
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 391 RPECVLNNDCPSNKACIKYKCKNP 414
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.7 bits (66), Expect = 0.24
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 849 RPECTVNTDCPLDKACVNQKCVDP 872
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.60
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 496 RPECTVNTDCPLDKACFNQKCVDP 519
RPEC +N+DCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.60
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 631 RPECTVNTDCPLDKACFNQKCVDP 654
RPEC +N+DCP ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.63
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 187 RPECIQNSECPYDKACINEKCADP 210
RPEC+ NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.67
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 76 RPECTVNSDCPLDKSCQNQKCADP 99
RPEC +NSDCP +++C NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.67
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 274 RPECTVNSDCPLDKSCQNQKCADP 297
RPEC +NSDCP +++C NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 26.6 bits (58), Expect = 3.2
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 959 RPECIQNSECPFDKACIREKCIDP 982
RPEC+ NS+CP ++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.9 bits (78), Expect = 0.055
Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 16/107 (14%)
Query: 91 CQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPV 150
C PC C + C S C C++G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF-------------- 54
Query: 151 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECP 197
C G C + G CSC P Y + +C + P
Sbjct: 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 32.4 bits (74), Expect = 0.17
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 864 CVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVN 923
C+ PC C + C + C+C+ G+ G R
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF-------------L 55
Query: 924 PCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECP 969
C G C + G CSC P + + +C + P
Sbjct: 56 NCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 29.3 bits (66), Expect = 2.5
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 15/110 (13%)
Query: 147 PEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEK 206
P+ S C + C D GS SC C + G C+ + C D
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG--RFCQ-REVSFLNCSLDNGGCTHY 67
Query: 207 CADPCPGF---CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCRE 253
C + C PG + + +P PCG + E
Sbjct: 68 CLEEVGWRRCSCAPGYKLG---------DDLLQCHPAVKFPCGRPWKRME 108
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 33.9 bits (78), Expect = 0.083
Identities = 28/128 (21%), Positives = 39/128 (30%), Gaps = 31/128 (24%)
Query: 892 CNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSP-------S 944
C C GFT CS + ++ P PC P+PC C
Sbjct: 25 CECPDGFTDP---NCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 945 CSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGS-CGYNALCKVINHSPICT 1003
C C F G +C + I+ C C +C + + C
Sbjct: 82 CKCPRGFNG--IHC------------------QHNINECEVEPCKNGGICTDLVANYSCE 121
Query: 1004 CPDGFVGD 1011
CP F+G
Sbjct: 122 CPGEFMGR 129
Score = 31.6 bits (72), Expect = 0.52
Identities = 32/149 (21%), Positives = 46/149 (30%), Gaps = 30/149 (20%)
Query: 41 PCQPSPCGPNSQCREVNHQA--VCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCA- 97
C P+PC C C C + P C+ + D+
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTD------PNCSSVVEVASDEEEPTSAGPC 55
Query: 98 --DPCP--GTC-GQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNP 152
+PC GTC A +C+C GF G +C +N
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQ-------------HNINE 99
Query: 153 CYPSPCGPYSQCRDINGSPSCSCLPSYIG 181
C PC C D+ + SC C ++G
Sbjct: 100 CEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 29.7 bits (67), Expect = 2.5
Identities = 26/127 (20%), Positives = 36/127 (28%), Gaps = 31/127 (24%)
Query: 835 CSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGS-CGQNANCRVINHNAV-- 891
C C + P C+ + D+ PC + C C +
Sbjct: 25 CECPDGFTD------PNCSSVVEVASDEEEPTS--AGPCTPNPCHNGGTCEISEAYRGDT 76
Query: 892 -----CNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCS 946
C C GF G C +N C PC C D+ + SC
Sbjct: 77 FIGYVCKCPRGFNGI---HCQ------------HNINECEVEPCKNGGICTDLVANYSCE 121
Query: 947 CLPTFIG 953
C F+G
Sbjct: 122 CPGEFMG 128
Score = 29.7 bits (67), Expect = 2.5
Identities = 32/147 (21%), Positives = 42/147 (28%), Gaps = 31/147 (21%)
Query: 414 PCVSGTCGEGAIC--DVINHAVSCNCPAGTTGN---PFVLCKPVQNEPVYTNPCHPSPCG 468
C C G IC + + + SC CP G T V + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 469 PNSQCREVNHQAV-------CSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCP 521
C C C + G C N + + C N
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHNINECEVEPCKN-------- 107
Query: 522 GTCGQNANCRVINHSPICTCKPGFTGD 548
C + + C C F G
Sbjct: 108 -----GGICTDLVANYSCECPGEFMGR 129
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 36.0 bits (82), Expect = 0.086
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 10/129 (7%)
Query: 522 GTCGQNANCRVINHSPICTCKPGFTGDALAYCNRIPLSNYVFEKILIQLMYCPGTTGNPF 581
G + + + F G + + + L + +
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKGW---------IRDVRVQSSLALPVDSGEVKLDDE 177
Query: 582 VLCKLVQNEPVYTNPCQPSPCGPNSQCREVNHQAVCSC-LPNYFGSPPACRPECTVNTDC 640
+ + C C V+ QAVC C + G + E + T
Sbjct: 178 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Query: 641 PLDKACFNQ 649
+ C++
Sbjct: 238 GSEYFCYDL 246
Score = 34.8 bits (79), Expect = 0.16
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 9/110 (8%)
Query: 376 CVCLPDFYGDGYVSCRPECVLNNDCPSN-KACIKYKCKNPCVSGTCGEGAICDVINHAVS 434
+ + V +D P N + G C G +C V++
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 435 CNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSC 484
C+C + G C +++ + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 34.8 bits (79), Expect = 0.20
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 891 VCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPT 950
V + ++ PP E C C ++ C C T
Sbjct: 159 VQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRT 218
Query: 951 -FIGAPPNCRPECIQNSECPFDKACIR 976
F G + E + + C
Sbjct: 219 GFRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 34.0 bits (77), Expect = 0.29
Identities = 15/127 (11%), Positives = 25/127 (19%), Gaps = 19/127 (14%)
Query: 159 GPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFCPPG 218
S + G I++ + A P
Sbjct: 130 PELRAAALKLTLASVREREPFKG--------WIRD-------VRVQSSLALPV---DSGE 171
Query: 219 TTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSC-LPNYFGSPPACRPEC 277
+ C C V+ QAVC C + G + E
Sbjct: 172 VKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEE 231
Query: 278 TVNSDCP 284
+ +
Sbjct: 232 YIATFKG 238
Score = 34.0 bits (77), Expect = 0.31
Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 1/83 (1%)
Query: 5 DTKINTYEVFYSCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSC 64
D ++ + + C C V+ QAVC C
Sbjct: 156 DVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDC 215
Query: 65 -LPNYFGSPPACRPECTVNSDCP 86
+ G + E + +
Sbjct: 216 SRTGFRGKDCSQGKEEYIATFKG 238
Score = 33.7 bits (76), Expect = 0.37
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 423 GAICDV-INHAVSCNC-PAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQA 480
G I DV + +++ + + C C V+ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 481 VCSC-LPNYFGSPPACRPECTVNTDCPLDKACFNQ 514
VC C + G + E + T + C++
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.9 bits (74), Expect = 0.79
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 915 PQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPEC 962
P E PC+ +PC N CRD C C T +C E
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL-GRSCEREA 658
Score = 32.5 bits (73), Expect = 0.81
Identities = 9/46 (19%), Positives = 9/46 (19%)
Query: 919 PEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQ 964
C C C SC C T P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 32.5 bits (73), Expect = 1.0
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 36 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 79
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.5 bits (73), Expect = 1.0
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 234 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 277
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.5 bits (73), Expect = 1.0
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 591 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 634
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.1 bits (72), Expect = 1.1
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 648 NQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNC 706
+ V + P SP E C C + C C + G +
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ 227
Query: 707 RPECVMNSECPSNEACIN 724
E + + S C +
Sbjct: 228 GKEEYIATFKGSEYFCYD 245
Score = 31.7 bits (71), Expect = 1.5
Identities = 8/44 (18%), Positives = 10/44 (22%)
Query: 456 PVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 499
+ C C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.4 bits (70), Expect = 2.0
Identities = 9/46 (19%), Positives = 10/46 (21%)
Query: 147 PEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQ 192
P C C C SC C + P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 31.0 bits (69), Expect = 2.5
Identities = 8/46 (17%), Positives = 8/46 (17%)
Query: 667 PEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVM 712
C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 30.6 bits (68), Expect = 3.3
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 704 PNCRPECVMNSECPSNEACINEKCGDPC-PGSCGYNAECKIINHTPICTCPDGFIGDPFT 762
P E ++ E P++ + G+ G C C +++ +C C
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 763 SCSPKPPEP 771
S +
Sbjct: 226 SQGKEEYIA 234
Score = 30.6 bits (68), Expect = 3.4
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 148 EPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPEC 190
E PC +PC CRD C C +C E
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 30.6 bits (68), Expect = 3.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 38 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSD 84
PC +PC N CR+ ++ VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.6 bits (68), Expect = 3.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 236 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSD 282
PC +PC N CR+ ++ VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.2 bits (67), Expect = 4.2
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 666 PPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMN 713
E PC+ +PC CRD C C +C E +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREATVL 661
Score = 30.2 bits (67), Expect = 4.6
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 587 VQNEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSP 627
PC +PC N CR+ ++ VC C +
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Score = 30.2 bits (67), Expect = 4.7
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 138 PPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSC-LPSYIGSPPNCRPECIQNSEC 196
PP E C C ++ C C + G + E +
Sbjct: 178 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Query: 197 PYDKACIN 204
+ C +
Sbjct: 238 GSEYFCYD 245
Score = 30.2 bits (67), Expect = 4.8
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 452 VQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSP 492
PC +PC N CR+ ++ VC C +
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Score = 30.2 bits (67), Expect = 4.9
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 271 PACRPECTVNSDCPLDKSCQNQKCADPC-PGTCGQNANCKVINHSPICRCKA-GFTGDPF 328
P E ++ + P + + G C C V++ +C C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 329 TYCNRIPLQYLMPNN 343
+ + +
Sbjct: 226 SQGKEEYIATFKGSE 240
Score = 29.8 bits (66), Expect = 5.9
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 73 PACRPECTVNSDCPLDKSCQNQKCADPC-PGTCGQNANCKVINHSPICRCKA-GFTGDPF 130
P E ++ + P + + G C C V++ +C C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 131 TYCNRIPPP 139
+
Sbjct: 226 SQGKEEYIA 234
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 33.9 bits (78), Expect = 0.098
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 922 VNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCID 981
+ C P+PC C+D S C C F G NC E
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG--KNC------------------ELDAT 87
Query: 982 PCPGSCGYNALCKV-INHSPICTCPDGFVGD 1011
+ CK + +C+C G+
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 33.1 bits (76), Expect = 0.15
Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 44/155 (28%)
Query: 12 EVFYSCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 71
EVF + + V + C+P+PC C++ + C C + G
Sbjct: 30 EVFENTEKTNEFW---------KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG- 79
Query: 72 PPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPFT 131
C +++ C + Q C + +C C G+
Sbjct: 80 -----KNCELDATCNIKNGRCKQFC-------------KTGADSKVLCSCTTGYRL---A 118
Query: 132 YCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRD 166
+ P P PCG S
Sbjct: 119 PDQK-------------SCKPAVPFPCGRVSVSHS 140
Score = 32.7 bits (75), Expect = 0.27
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 408 KYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPC 467
+Y + C C G +C ++ C C G G +N + +
Sbjct: 44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---------KNCELDATCNIKNGR 94
Query: 468 GPNSQCREVNHQAVCSCLPNYFGS 491
+ + +CSC Y +
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLA 118
Score = 31.9 bits (73), Expect = 0.44
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 19/108 (17%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
+ C P+PC C+D S C C + G C ++ C + C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFCKT 101
Query: 210 PCPG----FCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCRE 253
C G + + P P PCG S
Sbjct: 102 GADSKVLCSCTTGYRLA---PDQKSC------KPAVPFPCGRVSVSHS 140
Score = 31.2 bits (71), Expect = 0.84
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 35/135 (25%)
Query: 415 CVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCR 474
C+ C +V N + V + C P+PC C+
Sbjct: 18 CIEEKCSFEEAREVF-----ENTEKTNEF---------WKQYVDGDQCEPNPCLNGGLCK 63
Query: 475 EVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRV-I 533
+ + C C + G C ++ C C+
Sbjct: 64 DDINSYECWCQVGFEG------KNCELDATC--------------NIKNGRCKQFCKTGA 103
Query: 534 NHSPICTCKPGFTGD 548
+ +C+C G+
Sbjct: 104 DSKVLCSCTTGYRLA 118
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 238 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADP 297
+ C+P+PC C++ + C C + G C +++ C + Q C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFC--- 99
Query: 298 CPGTCGQNANCKVINHSPICRCKAGFTGD 326
+ +C C G+
Sbjct: 100 ----------KTGADSKVLCSCTTGYRLA 118
Score = 29.2 bits (66), Expect = 3.8
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ C P+PC C+D S C C + G NC + + N C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG--KNCELDA---TCNIKNGRCKQFCKTG 102
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGD 759
+ +C+C G+
Sbjct: 103 A--------------DSKVLCSCTTGYRLA 118
Score = 28.1 bits (63), Expect = 9.6
Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 34/115 (29%)
Query: 365 CAPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTC 420
C +CKD++ C C F G C L+ C +
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC--------------NIKNGR 94
Query: 421 GEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCRE 475
+ + V C+C G + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRL---------APDQKSCKPAVPFPCGRVSVSHS 140
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 35.3 bits (80), Expect = 0.12
Identities = 29/208 (13%), Positives = 49/208 (23%), Gaps = 17/208 (8%)
Query: 623 YFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYS 682
F + PA ++ + + +D P C +
Sbjct: 125 RFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQ 184
Query: 683 QCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACI-------NEKCGDPCPGSC 735
+ I + CS C +C P C+ C D CP
Sbjct: 185 KLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLM 244
Query: 736 GYNAECKIINHTPIC----------TCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVP 785
YN ++ P CP ++ SC + ++ C
Sbjct: 245 LYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKK 304
Query: 786 NAECRDGVCVCLPDYYGDGYVSCGPECI 813
VC + +S I
Sbjct: 305 CEGPCRKVCNGIGIGEFKDSLSINATNI 332
Score = 33.0 bits (74), Expect = 0.62
Identities = 21/152 (13%), Positives = 35/152 (23%), Gaps = 2/152 (1%)
Query: 390 CRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAICDVINHAVSC--NCPAGTTGNPFV 447
C +C S C +C C + +C +C CP NP
Sbjct: 191 CAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTT 250
Query: 448 LCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPL 507
V E Y+ P + + V +C + + +C
Sbjct: 251 YQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCR 310
Query: 508 DKACFNQKCVDPCPGTCGQNANCRVINHSPIC 539
+ N + I
Sbjct: 311 KVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 33.0 bits (74), Expect = 0.63
Identities = 22/172 (12%), Positives = 41/172 (23%), Gaps = 3/172 (1%)
Query: 149 PVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACI---NE 205
P C+ + + I + CS C +C P + C+
Sbjct: 171 PNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKF 230
Query: 206 KCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPN 265
+ C CPP +P + E Y+ P + + V +C +
Sbjct: 231 RDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGAD 290
Query: 266 YFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPIC 317
+ +C + N + I
Sbjct: 291 SYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 29.5 bits (65), Expect = 6.2
Identities = 24/171 (14%), Positives = 39/171 (22%), Gaps = 9/171 (5%)
Query: 835 CSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQN-ANCRVINHNAVC- 892
+ C +C+ C + +C C G + CR A C
Sbjct: 178 AGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCK 237
Query: 893 -NCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTF 951
C P P + P V C P + +GS +C
Sbjct: 238 DTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKC------PRNYVVTDHGSCVRACGADS 291
Query: 952 IGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSCGYNALCKVINHSPIC 1002
+ +C + S + N + I
Sbjct: 292 YEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.0 bits (76), Expect = 0.14
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
+ C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCSLDNGDCDQFCHE 97
Query: 210 PCPGF---CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCR 252
C G T + P P PCG + R
Sbjct: 98 EQNSVVCSCARGYTLA---------DNGKACIPTGPYPCGKQTLER 134
Score = 31.1 bits (71), Expect = 0.75
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 398 NDCPSNKACIKYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPV 457
+ +N+ KYK + C + C C +C C G G C+ +
Sbjct: 28 DSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCELFTRKL- 83
Query: 458 YTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGS 491
C + C E + VCSC Y +
Sbjct: 84 ----CSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 30.3 bits (69), Expect = 1.3
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 922 VNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCID 981
+ C SPC +C+D G +C+CL F G NC E C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCS------------ 85
Query: 982 PCPGSCGYNALCKVINHSPICTCPDGFVGD 1011
+ + C +S +C+C G+
Sbjct: 86 --LDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 30.3 bits (69), Expect = 1.3
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ C SPC +C+D G +C+CL + G NC E C +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---------- 87
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGD 759
+ + C ++ +C+C G+
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 30.0 bits (68), Expect = 1.8
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 34/137 (24%)
Query: 413 NPCVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQ 472
C+ TC +V + N+ + C SPC +
Sbjct: 10 RECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQGK 55
Query: 473 CREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQN-ANCR 531
C++ + C+CL + G C + T C G C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK------NCELFTR-------------KLCSLDNGDCDQFCH 96
Query: 532 VINHSPICTCKPGFTGD 548
+S +C+C G+T
Sbjct: 97 EEQNSVVCSCARGYTLA 113
Score = 28.4 bits (64), Expect = 5.9
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 415 CVSGTCGEGAICDVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCR 474
C C ++V C+C G T + P P PCG + R
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTL---------ADNGKACIPTGPYPCGKQTLER 134
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.2 bits (76), Expect = 0.19
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 593 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDC 640
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 33.2 bits (76), Expect = 0.20
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 458 YTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDC 505
YT C C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 33.2 bits (76), Expect = 0.21
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 38 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDC 85
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 33.2 bits (76), Expect = 0.21
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 236 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDC 283
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 30.5 bits (69), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 669 YVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 706
Y C C +C + G+ +CSC P + G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 29.0 bits (65), Expect = 5.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 921 YVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNC 958
Y C C +C + G+ +CSC P F G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 28.2 bits (63), Expect = 8.3
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 152 PCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNC 186
C C +C + G+ +CSC P + G P C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.4 bits (76), Expect = 0.39
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 36 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 79
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.4 bits (76), Expect = 0.39
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 234 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 277
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.4 bits (76), Expect = 0.39
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 591 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 634
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.1 bits (75), Expect = 0.56
Identities = 8/44 (18%), Positives = 10/44 (22%)
Query: 456 PVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 499
+ C C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 32.7 bits (74), Expect = 0.70
Identities = 9/40 (22%), Positives = 9/40 (22%)
Query: 923 NPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCRPEC 962
C C C SC C T P P
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 31.9 bits (72), Expect = 1.00
Identities = 9/44 (20%), Positives = 10/44 (22%)
Query: 147 PEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPEC 190
P C C C SC C + P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 31.5 bits (71), Expect = 1.3
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 671 NPCIPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
C C C SC C + ++ G P C + +
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPGTTYIFSKGGGQITYKWPPN 243
Query: 730 PCPGS 734
P +
Sbjct: 244 DRPST 248
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.8 bits (74), Expect = 0.45
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 147 PEPVNPCY--PSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACIN 204
P C C +++CRD C C+ +Y G+ C E K I
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 205 EKCADPCPGFC 215
+ F
Sbjct: 62 VGSSQVPVVFE 72
Score = 32.8 bits (74), Expect = 0.45
Identities = 12/73 (16%), Positives = 20/73 (27%)
Query: 930 CGPNSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCIDPCPGSCGY 989
C +++CRD C C+ + G C E K I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 990 NALCKVINHSPIC 1002
+ V+ +
Sbjct: 75 DLHSYVVMNHGRS 87
Score = 31.3 bits (70), Expect = 1.4
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 103 TCGQNANCKVINHSPICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYS 162
C +A C+ CRC A +TG+ C P V + S
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF-VGSSQVPVVF 71
Query: 163 QCRDINGSP 171
+ D++
Sbjct: 72 ENTDLHSYV 80
Score = 30.9 bits (69), Expect = 2.1
Identities = 12/73 (16%), Positives = 21/73 (28%)
Query: 678 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGY 737
C +++CRD C C+ NY G C E + I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 738 NAECKIINHTPIC 750
+ ++ +
Sbjct: 75 DLHSYVVMNHGRS 87
Score = 30.5 bits (68), Expect = 3.0
Identities = 10/71 (14%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 734 SCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGV 793
C +AEC+ C C + G+ C + + +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVGSSQVPVVFE 72
Query: 794 CVCLPDYYGDG 804
L Y
Sbjct: 73 NTDLHSYVVMN 83
Score = 29.7 bits (66), Expect = 4.6
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 356 TPVLEDTC-----NCAPNAVCKDEV----CVCLPDFYGDGYVSCRPECVLNNDCPSNKAC 406
P+ + TC C+ +A C+D C C+ ++ G+G C E K
Sbjct: 1 APLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGR 59
Query: 407 IKYKCKNPCVSGTC 420
I V
Sbjct: 60 IFVGSSQVPVVFEN 73
Score = 29.3 bits (65), Expect = 5.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 523 TCGQNANCRVINHSPICTCKPGFTGD 548
C +A CR C C +TG+
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGN 39
Score = 29.3 bits (65), Expect = 7.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 301 TCGQNANCKVINHSPICRCKAGFTGD 326
C +A C+ CRC A +TG+
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGN 39
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.59
Identities = 23/106 (21%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
+ C SPC C+D S C CLP++ G NC C + + C+D
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICVNENGGCEQYCSD 104
Query: 210 PCPGF----CPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQC 251
C G + P PCG
Sbjct: 105 HTGTKRSCRCHEGYSLL---ADGVSC------TPTVEYPCGKIPIL 141
Score = 30.0 bits (68), Expect = 2.0
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ C SPC C+D S C CLP + G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 730 PCPGSCGYNAECKIINHTPICTCPDGFIGD 759
C C C +G+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.64
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 593 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCP 641
YT CQP C + +C E+ + C+C Y+G P+C P
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG------PQCQFVQVDP 160
Score = 31.7 bits (72), Expect = 0.67
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 38 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 71
YT CQP C + +C E+ + C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 31.7 bits (72), Expect = 0.67
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 236 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 269
YT CQP C + +C E+ + C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 31.3 bits (71), Expect = 0.81
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 458 YTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCP 506
YT C P C + +C E+ + C+C Y+G P+C P
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG------PQCQFVQVDP 160
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 33.1 bits (74), Expect = 0.65
Identities = 26/180 (14%), Positives = 41/180 (22%), Gaps = 18/180 (10%)
Query: 12 EVFYSCPPGTT-GSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFG 70
E+ YS G + C P E + + ++ +
Sbjct: 452 ELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATR 511
Query: 71 SPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDPF 130
R D + N D C C + C C C + G
Sbjct: 512 ----FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGGL-- 561
Query: 131 TYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPEC 190
YC+ P Q + + + G S C G + C
Sbjct: 562 -YCDEPETSLPTQ------LKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGC 614
Score = 32.3 bits (72), Expect = 0.90
Identities = 17/103 (16%), Positives = 21/103 (20%), Gaps = 12/103 (11%)
Query: 848 CRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCS 907
R D A N D C C + C C C + G C
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGL---YCD 564
Query: 908 KIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPT 950
+ P Q + G S C
Sbjct: 565 EPETSLPTQL-----KDNFNRAPSNQNWLTVSGGKLSTVCGAV 602
Score = 30.0 bits (66), Expect = 5.5
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 7/115 (6%)
Query: 706 CRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCS 765
R + A N GD C C + C C C + + G
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGGLYCDEPE 567
Query: 766 PKPPEPVQPVIQEDTCN---CVPNAECRDGVCVCLPDYYGDGYVSCGPECILNND 817
P ++ N + VC + + ++ D
Sbjct: 568 TSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVD 622
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 32.5 bits (74), Expect = 0.66
Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 6/102 (5%)
Query: 593 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKAC--FNQK 650
Y + C +P G QC + C + + + L KA
Sbjct: 28 YADDCT-TPDGDQGQCMPFSS---CRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNG 83
Query: 651 CVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPS 692
C S S + CG + R G
Sbjct: 84 VRHFCCPSANIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEV 125
Score = 31.0 bits (70), Expect = 2.3
Identities = 16/116 (13%), Positives = 26/116 (22%), Gaps = 7/116 (6%)
Query: 60 AVCSCLPNYFGS---PPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHS 116
A+ S + C C SC+ + GQ ++
Sbjct: 14 AIVSSMGVQSARADYADDCTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYL 73
Query: 117 PICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPS 172
C G +C + + CG + R NG
Sbjct: 74 QKALC--GEFNGVRHFCCPSANIQHNSK--VMSLFKDENFDCGNFLSQRVSNGYEV 125
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 32.8 bits (74), Expect = 0.71
Identities = 68/566 (12%), Positives = 119/566 (21%), Gaps = 67/566 (11%)
Query: 430 NHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNY- 488
+ G P KP + + V C ++
Sbjct: 285 RGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFE 344
Query: 489 -FGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTG 547
CT + P G + V S C PG+
Sbjct: 345 TPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYAL 404
Query: 548 DALAYCNRIPLSNYVFEKILIQLMYCPGTTGNPFVLCKLVQNEPVYTNPCQPSPCGPNSQ 607
+ C +P C V+ + + +
Sbjct: 405 PKAQ-----------------TTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQY 447
Query: 608 CREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPDSPPPPLESPP 667
+ +A C Y + D + + C P + +
Sbjct: 448 TYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTW 507
Query: 668 EYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKC 727
+N + C + + S C N P C + + +K
Sbjct: 508 FKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKD 567
Query: 728 GDPCPGSCGYNAECKIINHTPICTCPDGF--IGDPFTSCSPKPPEPVQPVIQEDTCNCVP 785
+ +C GF +G C P P+ +E +C P
Sbjct: 568 QYKVGEVLKF-------------SCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGP 614
Query: 786 NAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSP 845
E +G ++ C P +
Sbjct: 615 PPELLNGNVKEKTKEE-------------------------YGHSEVVEYYCNPRFLMKG 649
Query: 846 PACRPECTVNTDCPLDKACVNQKCVDPCP----GSCGQNANCRVINHNAVCNCKPGFT-- 899
P +C L V + P G ++ + NC FT
Sbjct: 650 PNKI-QCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMI 708
Query: 900 GEPRIRCSKIPPPPPPQDVP-EYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNC 958
G I C PQ V + + C S + + +
Sbjct: 709 GHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEG 768
Query: 959 RPECIQNSECPFDKACIREKCIDPCP 984
+ + + I CP
Sbjct: 769 WIHTVCINGRWDPEVNCSMAQIQLCP 794
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 32.5 bits (73), Expect = 0.85
Identities = 55/392 (14%), Positives = 89/392 (22%), Gaps = 33/392 (8%)
Query: 367 PNAVCKDEVCVCLPDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAIC 426
P AV K Y + C+ NN P+ +C C SGT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 427 DVINHAVSCNCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLP 486
++ + + + C +P+P +C Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 487 NYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCP---GTCGQNANCRVINHSPICTCKP 543
+ C + + L + + C P P G ++ +C
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLT 653
Query: 544 GFT--GDALAYCNRIPLSNYVFEKILIQLMYCPGTTGNPFVLCKLVQ-NEPVYTNPCQPS 600
GF G C GT V C+ + +PV +
Sbjct: 654 GFETVGYQYFRCLP------------------DGTWRQGDVECQRTECIKPVVQEVLTIT 695
Query: 601 PCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPDSPP 660
P + E +C + + P+ C N+ P C
Sbjct: 696 PFQRLYRIGESIE---LTCPKGFVVAGPSRYT-CQGNSWTPPISNS--LTCEKDTLTKLK 749
Query: 661 PPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNE 720
+ + N P C+
Sbjct: 750 GHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLH 809
Query: 721 ACINEKCGDPCPGSCGYNAECKIINHTPICTC 752
C D G N T +C
Sbjct: 810 FLHIGSCQDGRQLEWGLERTRLSSNSTKKESC 841
Score = 32.5 bits (73), Expect = 0.98
Identities = 44/336 (13%), Positives = 77/336 (22%), Gaps = 23/336 (6%)
Query: 640 CPLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNY 699
P+ N C ++ L+ +PC +PC + G C C
Sbjct: 467 APIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGT 526
Query: 700 IGAPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGD 759
G NC + + C + + C +
Sbjct: 527 YG--ENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYK---------RSRTRECNNPAPQR 575
Query: 760 PFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCP 819
C + + N P + + P N
Sbjct: 576 GGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIR 635
Query: 820 SNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVN-TDCPLDKACVNQKCVDPCPGSCG 878
+ K + SCL + C + T D C +C+ P
Sbjct: 636 NEKQL--YLVGEDVEISCLTGFETVGYQYF-RCLPDGTWRQGDVECQRTECIKPVVQEVL 692
Query: 879 QNANCR---VINHNAVCNCKPGFT--GEPRIRCSKIP-PPPPPQDVPEYVNPCIPSPCGP 932
+ I + C GF G R C PP + +
Sbjct: 693 TITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLT--CEKDTLTKLKG 750
Query: 933 NSQCRDINGSPSCSCLPTFIGAPPNCRPECIQNSEC 968
+ Q C C+ + C+ +++
Sbjct: 751 HCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDS 786
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.1 bits (72), Expect = 1.0
Identities = 29/215 (13%), Positives = 46/215 (21%), Gaps = 6/215 (2%)
Query: 694 SCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCP 753
+ N EC E + EK + TC
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNY-RCWTTNRCQKMCPSTCG 190
Query: 754 DGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCV--CLPDYYGDGYVSCGPE 811
+ C P+ + C + GVCV C P+ Y C
Sbjct: 191 KRACTENNECCHPECLGSCSAPDNDTACVACRHYY-YAGVCVPACPPNTYRFEGWRCVDR 249
Query: 812 CILNNDCPSNKACIRNKFNKQAVC--SCLPNYFGSPPACRPECTVNTDCPLDKACVNQKC 869
N + + C C + + CP +
Sbjct: 250 DFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTK 309
Query: 870 VDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRI 904
S C + N + N + G +
Sbjct: 310 TIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASEL 344
Score = 31.7 bits (71), Expect = 1.5
Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 4/163 (2%)
Query: 167 INGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADPCPGFCPPGTTGSPFVQ 226
++ S + + EC ++ + EK TT
Sbjct: 125 VDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKM 184
Query: 227 CKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVC-SCLPNYFGSPPACRPECTVNSDCPL 285
C + T + C ++ C +C Y+ C P C N+
Sbjct: 185 CPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAG--VCVPACPPNTYRFE 242
Query: 286 DKSCQNQK-CADPCPGTCGQNANCKVINHSPICRCKAGFTGDP 327
C ++ CA+ + + + + C +GF +
Sbjct: 243 GWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNG 285
Score = 29.8 bits (66), Expect = 5.5
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 777 QEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNK----ACIRNKFNKQ 832
+ + N + C + C PEC+ + P N AC +
Sbjct: 170 EYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGV 229
Query: 833 AVCSCLPNYFG-------SPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 885
V +C PN + C + + + +C+ CP +N + +
Sbjct: 230 CVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSM 289
Query: 886 INHNAVCNCKPGFTGEPRIRC 906
C E + +
Sbjct: 290 YCIPCEGPCPKVCEEEKKTKT 310
Score = 29.8 bits (66), Expect = 5.9
Identities = 25/197 (12%), Positives = 47/197 (23%), Gaps = 13/197 (6%)
Query: 378 CLPDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAICDVINHAVSCNC 437
L + V +P + CP K + + C
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTC 189
Query: 438 PAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVC--SCLPNYFG----- 490
C P + P + + C CR + VC +C PN +
Sbjct: 190 GKRACTENNECCHPECLGSC-SAPDNDTAC---VACRHYYYAGVCVPACPPNTYRFEGWR 245
Query: 491 --SPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGD 548
C + + + +C+ CP +N + + C +
Sbjct: 246 CVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEE 305
Query: 549 ALAYCNRIPLSNYVFEK 565
S + +
Sbjct: 306 KKTKTIDSVTSAQMLQG 322
Score = 29.0 bits (64), Expect = 9.4
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 2/195 (1%)
Query: 744 INHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGD 803
++ + I + ++ C + C
Sbjct: 125 VDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKM 184
Query: 804 GYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLP-NYFGSPPACRPECTVNTDCPLDK 862
+CG N+ + C+ + +C+ ++ C P C NT
Sbjct: 185 CPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGW 244
Query: 863 ACVNQKCVDPCPGSCGQNANCRVINHNA-VCNCKPGFTGEPRIRCSKIPPPPPPQDVPEY 921
CV++ + ++ VI+ + C GF IP P V E
Sbjct: 245 RCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEE 304
Query: 922 VNPCIPSPCGPNSQC 936
++Q
Sbjct: 305 EKKTKTIDSVTSAQM 319
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 32.1 bits (72), Expect = 1.1
Identities = 32/179 (17%), Positives = 49/179 (27%), Gaps = 3/179 (1%)
Query: 151 NPCYPSPCGPYSQCRDI--NGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCA 208
N + C +S C+ + S C + C C Q + AC N
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 234
Query: 209 DPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFG 268
C CPP +C + C+ S Q N++ + C Y
Sbjct: 235 GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 294
Query: 269 SPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFTGDP 327
+ CP + + + C VIN S I + G
Sbjct: 295 NSSNLLCTP-CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAA 352
Score = 31.7 bits (71), Expect = 1.5
Identities = 24/233 (10%), Positives = 50/233 (21%), Gaps = 9/233 (3%)
Query: 637 NTDCPLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGS-PSCSC 695
N + + +D D+ + E P + C +
Sbjct: 122 NNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVER 181
Query: 696 LPNYIGAPPNCRPECVMNSECPSNEACINEKCGDPC--PGSCGYNAECKIINHTPIC--T 751
+ C C + C + C + +C C P C+ C T
Sbjct: 182 CWTHSHCQKVCPTICKSHG-CTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVET 240
Query: 752 CPDGFIGDPFTSCSPKPP-EPVQPVIQEDTCNCVPNAECRDGVCV--CLPDYYGDGYVSC 808
CP + C + + + + C+ C Y +
Sbjct: 241 CPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL 300
Query: 809 GPECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLD 861
C+ + + L + + +
Sbjct: 301 CTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAE 353
Score = 30.6 bits (68), Expect = 2.9
Identities = 30/191 (15%), Positives = 46/191 (24%), Gaps = 15/191 (7%)
Query: 751 TCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCGP 810
CP G + + V+ C V C+ C C
Sbjct: 158 ICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS---ECLG 214
Query: 811 ECILNNDCPSNKACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCV 870
C +D AC + + V +C P Y+ Q
Sbjct: 215 NCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF-----------SFCQDLH 263
Query: 871 DPCPGSCGQNANCRVINHNA-VCNCKPGFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSP 929
C S Q + VI++N + C G+T P P+
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Query: 930 CGPNSQCRDIN 940
+ R
Sbjct: 324 VTSAQELRGCT 334
Score = 30.2 bits (67), Expect = 3.9
Identities = 27/185 (14%), Positives = 40/185 (21%), Gaps = 14/185 (7%)
Query: 151 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCADP 210
C G + + + +C+ C + C C
Sbjct: 153 EECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHS 210
Query: 211 -CPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPS----------PCGPNSQCREVNHQAV 259
C G C + V C+ + C P +
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSR 270
Query: 260 CSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRC 319
Y C PEC + C PCP C K I+ +
Sbjct: 271 RQGCHQYVIHNNKCIPECPSGYTMN-SSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQE 329
Query: 320 KAGFT 324
G T
Sbjct: 330 LRGCT 334
Score = 29.8 bits (66), Expect = 4.9
Identities = 31/253 (12%), Positives = 52/253 (20%), Gaps = 33/253 (13%)
Query: 781 CNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPN 840
+ + + ++ + K
Sbjct: 125 LCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWT 184
Query: 841 YFGSPPACRPECTVNTDCPLDKACVNQKCVDPC--PGSCGQNANCRVINHNAVC--NCKP 896
+ C C + C + C + +C+ C P + CR + C C P
Sbjct: 185 HSHCQKVCPTICKSHG-CTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 897 GFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPP 956
+ RC + ++
Sbjct: 244 PYYHFQDWRCVN---------------------FSFCQDLHHKCKNSRRQGCHQYVIHNN 282
Query: 957 NCRPECIQNSECPFDKACIREKCIDPCPGSCGYNALCKVI------NHSPICTCPDGFVG 1010
C PEC C+ PCP C K I CT +G +
Sbjct: 283 KCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
Query: 1011 DAFSGCYPKPPER 1023
G E
Sbjct: 342 INIRGGNNLAAEL 354
Score = 29.8 bits (66), Expect = 5.6
Identities = 20/162 (12%), Positives = 32/162 (19%), Gaps = 4/162 (2%)
Query: 9 NTYEVFYSCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVC--SCLP 66
CP H N QP CR C +C P
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 67 NYFGSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKAGFT 126
Y+ + D C+N + N
Sbjct: 244 PYYHFQDWRCVNFSFCQDL--HHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
Query: 127 GDPFTYCNRIPPPPPPQEDVPEPVNPCYPSPCGPYSQCRDIN 168
C ++ ++ + + C + IN
Sbjct: 302 TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
Score = 29.1 bits (64), Expect = 9.0
Identities = 29/190 (15%), Positives = 45/190 (23%), Gaps = 11/190 (5%)
Query: 363 CNCAPNAVCKDEVCVCLPDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGE 422
C V + C+ C C S+ + C + G C +
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHSECLGNCSQ 218
Query: 423 G------AICDVINHAVSC--NCPAGTTGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCR 474
C C CP C + C S Q
Sbjct: 219 PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYV 278
Query: 475 EVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPGTCGQNANCRVIN 534
N++ + C Y + + CP + + + C VIN
Sbjct: 279 IHNNKCIPECPSGYTMNSSNLLCTPCLG-PCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337
Query: 535 HSPICTCKPG 544
S I + G
Sbjct: 338 GSLIINIRGG 347
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 458 YTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGS 491
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 38 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 71
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 236 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 269
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 593 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 626
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.0 bits (65), Expect = 5.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 873 CPGSCGQNANCRVINHNAVCNCKPGFTG 900
SC + C +N C C PGF+G
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 28.6 bits (64), Expect = 6.4
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 669 YVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 706
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.1 bits (66), Expect = 1.3
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 22/97 (22%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR--PECVMNSECPSNEACINEKC 727
++ C + QC + GS C C YI A C EC + + C N C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCG-NGTCKNV-- 61
Query: 728 GDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSC 764
G + CTC +GF P +C
Sbjct: 62 ----IGG--FE-----------CTCEEGFEPGPMMTC 81
Score = 28.3 bits (64), Expect = 2.4
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 922 VNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPPNCR--PECIQNSECPFDKACIREKC 979
++ C + QC + +GS C C +I A C EC + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCG---------- 54
Query: 980 IDPCPGSCGYNALCKVINHSPICTCPDGFVGDAFSGC 1016
N CK + CTC +GF C
Sbjct: 55 ----------NGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 27.5 bits (62), Expect = 5.6
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 150 VNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACINEKCAD 209
++ C + QC + +GS C C YI + C+ EC C N C +
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE----CVDTDECSVGNPCGNGTCKN 60
Query: 210 PCPGF---CPPGTTGSPFVQCK 228
GF C G P + C+
Sbjct: 61 VIGGFECTCEEGFEPGPMMTCE 82
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.5 bits (70), Expect = 1.9
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 618 SCLPNYFGSPPACRPECTVNTDCPLDKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPS- 676
C + C KC++PC +S + P P
Sbjct: 38 ISAFFQHFQNNGSLVWCQNHKQC--------SKCLEPCKESGDLRKHQCQSFCEPLFPKK 89
Query: 677 ----PCGPYSQCRDIGGSP-SCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGDPC 731
+ C G C C +++EC + C + CG C
Sbjct: 90 SYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTC 149
Score = 29.5 bits (65), Expect = 7.8
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 780 TCNCVPNAECRDGVCVCLPDYYGDGYVSCGPEC-----ILNNDCPSNKACIRNKFN-KQA 833
C + +C + C + C C + +C ++ ++ KQ
Sbjct: 51 LVWCQNHKQCSKCLEPCK-ESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQG 109
Query: 834 VCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPC 873
C G AC C V+ +C K C + C C
Sbjct: 110 DCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTC 149
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 31.3 bits (70), Expect = 2.2
Identities = 29/274 (10%), Positives = 59/274 (21%), Gaps = 3/274 (1%)
Query: 590 EPVYTNPCQPSPCGPNSQCREVNHQ-AVCSCLPNYFGSPPACRPECTVNTDCPLDKACFN 648
E G +S C C+ + + P+C +D
Sbjct: 176 EWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRC--DGGPDCKDKSDEENCAVATC 233
Query: 649 QKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP 708
+ C D + C + P+ + +
Sbjct: 234 RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVC 293
Query: 709 ECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKP 768
+ S+E + + G + C + C CPDGF C
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 769 PEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNK 828
+ N +C+ L + + + + ++
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 413
Query: 829 FNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDK 862
++ L N +D
Sbjct: 414 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 447
Score = 29.0 bits (64), Expect = 9.3
Identities = 39/276 (14%), Positives = 57/276 (20%), Gaps = 22/276 (7%)
Query: 671 NPCIPS--PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEK-- 726
+ CIP C C D C Y C + CI+
Sbjct: 155 STCIPQLWACDNDPDCEDGSDEWPQRCRGLY--VFQGDSSPCSAFEFHCLSGECIHSSWR 212
Query: 727 --CGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCS----PKPPEPVQPVIQEDT 780
G C C DG C K +
Sbjct: 213 CDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTL 272
Query: 781 CNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNKACIRNKFNKQAVCSCLPN 840
C +C G C+ D + C C+ N VC+ L
Sbjct: 273 CEGPNKFKCHSGECIT-LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKI 331
Query: 841 YFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTG 900
+ + C +D C + C + C C+ GF
Sbjct: 332 GYECLCPDGFQLVAQRRCE---------DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 382
Query: 901 EPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQC 936
+P + K +
Sbjct: 383 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 418
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 30.3 bits (67), Expect = 2.2
Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 914 PPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAPP---NCRPECIQNSEC-- 968
D +P + P CL G + + +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 969 -PFDKACIREKCIDPCPGSCGYNALCKVINHSPICTCPDGFVGD 1011
P + + CPG C C N IC CPDGF G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 29.9 bits (66), Expect = 2.9
Identities = 20/104 (19%), Positives = 25/104 (24%), Gaps = 9/104 (8%)
Query: 451 PVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPP---ACRPECTVNTDC-- 505
+ + +P P Q CL G +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 506 -PLDKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGD 548
P + F CPG C C N IC C GF G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 28.7 bits (63), Expect = 7.6
Identities = 21/104 (20%), Positives = 26/104 (25%), Gaps = 14/104 (13%)
Query: 659 PPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSEC-- 716
P + P P S C + + + +
Sbjct: 84 ADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEV--------DVIVMNSEGNTILX 135
Query: 717 -PSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGD 759
P N CPG C C N IC CPDGF G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 31.0 bits (70), Expect = 2.4
Identities = 14/112 (12%), Positives = 22/112 (19%), Gaps = 8/112 (7%)
Query: 139 PPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSY----IGSPPNCRPECIQNS 194
E V +C C+ + + +
Sbjct: 12 ASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTG 71
Query: 195 ECPYDKACINEKCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCG 246
E +D +C C G P +PS CG
Sbjct: 72 EGIFDIRENANECESYLDVCCGLPEGGVL----PTPSPTPPVVPVLKPSFCG 119
Score = 30.6 bits (69), Expect = 3.1
Identities = 11/138 (7%), Positives = 22/138 (15%), Gaps = 29/138 (21%)
Query: 657 DSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSEC 716
+ + E V +C C+ + C
Sbjct: 10 GNASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------------RC 54
Query: 717 PSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVI 776
+ + G ++ C P V P
Sbjct: 55 DGVTNTVTPEEVINTTGEGIFD-----------IRENANECESYLDVCCGLPEGGVLP-- 101
Query: 777 QEDTCNCVPNAECRDGVC 794
+ + C
Sbjct: 102 -TPSPTPPVVPVLKPSFC 118
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 28.9 bits (64), Expect = 2.7
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 671 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ CI + + C R + G+ CL + C P
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--------------APNMTCK 50
Query: 730 PCPGSCGYNAECKIINHTPI-CTCPDGF 756
G C AECK+ + I C C
Sbjct: 51 DKNGGCAPEAECKMNDKNEIVCKCTKEG 78
Score = 28.1 bits (62), Expect = 4.0
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 923 NPCIPSPCGPNSQC-RDINGSPSCSCLPTFIGAPPNCRPECIQNSECPFDKACIREKCID 981
+ CI + N+ C R ++G+ CL F C P N C
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--APNMTCKDK---------- 52
Query: 982 PCPGSCGYNALCKVINHSPI-CTCPDGFVGDAFSGCY 1017
G C A CK+ + + I C C F G +
Sbjct: 53 --NGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVF 87
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 2.7
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 10/124 (8%)
Query: 677 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR--------PECVMNSECPSNEACINEKCG 728
PC ++ + S CR C + + C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 729 DPCPGSCGYNAE--CKIINHTPICTCPDGFIGDPFTSCSPKPPEPVQPVIQEDTCNCVPN 786
+ G + T +P T S + ++P+ ++ +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 787 AECR 790
E
Sbjct: 155 RELL 158
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.2 bits (68), Expect = 4.3
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 15/137 (10%)
Query: 41 PCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKSCQNQKCADPC 100
+ S + H C +++ + K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYH----------DTDFLGEELDIVAAKSHEAC 317
Query: 101 PGTCGQNANCKVINHSP---ICRCKAGFTGDPFTYCNRIPPPPPPQEDVPEPVN--PCYP 155
C C+ ++P C G + + +
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 156 SPCGPYSQCRDINGSPS 172
+ C + R + G+ S
Sbjct: 378 NECTTKIKPRIVGGTAS 394
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.9 bits (65), Expect = 4.6
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 670 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
++ C SPC C++ GS C C + C+ + + I+ +C
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 730 PCPGSCGYNAECKIINHTP---------ICTCPDGFIGDPFTSC 764
G+ + C + C G+ T C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 28.1 bits (62), Expect = 4.6
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 671 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ CI + + C R + G+ CL + C + C N
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---VPASITCEEN---------- 57
Query: 730 PCPGSCGYNAECKIIN-HTPICTCPDG 755
G C AEC + + C C
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKE 82
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 29.8 bits (68), Expect = 5.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 15/44 (34%)
Query: 835 CSCLPNYFGSPPACRPECTVNTD-CPLDKA------CVNQKCVD 871
C C +YFG+ P NT CP+ N+ V+
Sbjct: 22 CGCRADYFGAEP--------NTHTCPVCLGLPGALPVPNRVAVE 57
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 29.8 bits (66), Expect = 6.1
Identities = 30/280 (10%), Positives = 62/280 (22%), Gaps = 3/280 (1%)
Query: 584 CKLVQNEPVYTNPCQPSPCGPNSQCREVNHQ-AVCSCLPNYFGSPPACRPECTVNTDCPL 642
C+ +E G +S C C+ + + P+C +D
Sbjct: 152 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRC--DGGPDCKDKSDEEN 209
Query: 643 DKACFNQKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGA 702
+ C D + C + P+ +
Sbjct: 210 CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECI 269
Query: 703 PPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAECKIINHTPICTCPDGFIGDPFT 762
+ + S+E + + G + C + C CPDGF
Sbjct: 270 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 329
Query: 763 SCSPKPPEPVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCGPECILNNDCPSNK 822
C + N +C+ L + + + +
Sbjct: 330 RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 389
Query: 823 ACIRNKFNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDK 862
++ ++ L N +D
Sbjct: 390 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.5 bits (66), Expect = 6.7
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 17/72 (23%)
Query: 380 PDFYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAICDVI-NHAVSCNCP 438
P + CP + C E A C + + + SC C
Sbjct: 5 PGVPTSPVWWNSAQ----RFCPDGSP-------SECH-----EHADCVLERDGSRSCVCA 48
Query: 439 AGTTGNPFVLCK 450
G GN + +
Sbjct: 49 VGWAGNGILCGR 60
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.8 bits (61), Expect = 7.0
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 20/92 (21%)
Query: 671 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVMNSECPSNEACINEKCGD 729
+ C+ C S C R + C CL NY C N C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVEN--------PNPTCNEN---- 52
Query: 730 PCPGSCGYNAECKIINHTP-----ICTCPDGF 756
G C +A+C + C C
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPD 82
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 28.9 bits (65), Expect = 8.6
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 5/79 (6%)
Query: 137 PPPPPPQEDVPEPVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSEC 196
P P+ +VP+P P P Q G +P +
Sbjct: 369 LPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADG-----LYPNPRERSSFYSCAAGR 423
Query: 197 PYDKACINEKCADPCPGFC 215
+ ++C C
Sbjct: 424 LFQQSCPTGLVFSNSCKCC 442
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 29.1 bits (65), Expect = 8.6
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 897 GFTGEPRIRCSKIPPPPPPQDVPEYVNPCIPSPCGPNSQCRDINGSPSCSCLPTFIGAP 955
G CS + P P P P G + DI + + + P+ + P
Sbjct: 276 GQDPNAMTDCSDVIPLSKP---IPGNGPFSFFPPGKSHS--DIEQACAETPFPSLVTLP 329
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 29.2 bits (64), Expect = 8.7
Identities = 53/424 (12%), Positives = 92/424 (21%), Gaps = 12/424 (2%)
Query: 149 PVNPCYPSPCGPYSQCRDINGSPSCSCLPSYIGSPPNCRPECIQNSECPYDKACI---NE 205
P C+ + + I + CS C +C P + C+
Sbjct: 171 PNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKF 230
Query: 206 KCADPCPGFCPPGTTGSPFVQCKPIVHEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPN 265
+ C CPP +P + E Y+ P + + V +C +
Sbjct: 231 RDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGAD 290
Query: 266 YF----GSPPACRPECTVNSDCPLDKSCQNQKCADPCPGTCGQNANCKVINHSPICRCKA 321
+ C+ K + T ++ +
Sbjct: 291 SYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPV 350
Query: 322 GFTGDPFTYCNRIPLQYLMPNNAPMNVPPISAVETPVLEDTCNCAPNAVCKDEVCVCLPD 381
F GD FT+ + Q L + ++ T A +
Sbjct: 351 AFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHG 410
Query: 382 FYGDGYVSCRPECVLNNDCPSNKACIKYKCKNPCVSGTCGEGAICDVINHAVSCNCPAGT 441
+ VS + N + + +
Sbjct: 411 QFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTIN--WKKLFGTSGQKTKIIS 468
Query: 442 TGNPFVLCKPVQNEPVYTNPCHPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTV 501
Q +P P N C+ R
Sbjct: 469 NRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVEN 528
Query: 502 NTDCPLDKACFNQKCVDPCPGTCGQN-ANCRVINHSPIC--TCKPGFTGDALAYCNRIPL 558
+ C Q C G N C P C TC G G+ +
Sbjct: 529 SECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYAD 588
Query: 559 SNYV 562
+ +V
Sbjct: 589 AGHV 592
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.4 bits (66), Expect = 8.7
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 588 QNEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACF 647
P+ P P P ++V +A+ L + + ++ + C
Sbjct: 903 AFPPLERKPFIPKKPIP--AIKDVIGKALQY-LGTFGELSNIEQVVAVIDEE-----MCI 954
Query: 648 N-QKCVDPCPDSPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSC-SCLPNYIGAPPN 705
N KC C DS ++ PE P + C + C + C + P
Sbjct: 955 NCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPK 1014
Query: 706 CRPECVMNSEC 716
+N C
Sbjct: 1015 RGLPLAVNPVC 1025
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.510
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,521,684
Number of extensions: 1095416
Number of successful extensions: 9243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4943
Number of HSP's successfully gapped: 1593
Length of query: 1031
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 928
Effective length of database: 3,825,930
Effective search space: 3550463040
Effective search space used: 3550463040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)