BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13146
(895 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 623 RPECVLNNDCPSNKACIRNKCKNP 646
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 719 RPECVLNNDCPSNKACIRNKCKNP 742
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 53 RPECTVNSDCPLNKACFNQKCVDP 76
RPEC +NSDCP N+AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 484 RPECTVNTDCPLDKACVNQKCVDP 507
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 277 RPECIQNSECPYDKACINEKCADP 300
RPEC+ NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 379 RPECVQNSDCPRNKACIKLKCKNP 402
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 824 RPECTVNSDCPLNKACFNQKC 844
RPEC +NSDCP N+AC NQKC
Sbjct: 1 RPECVLNSDCPSNQACVNQKC 21
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 164 RPECVQNNDCSNDKACINEKCQDP 187
RPECV N+DC +++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 50 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEE-- 103
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
+S +C+C GY + D +C P P P
Sbjct: 104 ------------QNSVVCSCARGYTLADNGKACIPTGPYP 131
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 743 CVPGTCGEGAIC--DVINHAVSCNCPPGTTG---SPFVQCKPIQYEPVYTNPCQPSPCGP 797
C P C G IC + + + SC CP G T S V+ + EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 798 NSQCR 802
C
Sbjct: 63 GGTCE 67
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEE-- 58
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
+S +C+C GY + D +C P P P
Sbjct: 59 ------------QNSVVCSCARGYTLADNGKACIPTGPYP 86
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 7 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEE-- 60
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
+S +C+C GY + D +C P P P
Sbjct: 61 ------------QNSVVCSCARGYTLADNGKACIPTGPYP 88
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 6 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEE-- 59
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
+S +C+C GY + D +C P P P
Sbjct: 60 ------------QNSVVCSCARGYTLADNGKACIPTGPYP 87
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 88
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
G C C +S +C+C GY + D +C P P P
Sbjct: 89 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 326 YIGDAFSSCYPKP--PEPVQPVIQEDTCNCAPNAECRDGVCLCLPDYYGD 373
Y GDAF C K P+ V PV+ C NAE + Y+G+
Sbjct: 230 YFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGE 279
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 326 YIGDAFSSCYPKP--PEPVQPVIQEDTCNCAPNAECRDGVCLCLPDYYGD 373
Y GDAF C K P+ V PV+ C NAE + Y+G+
Sbjct: 222 YFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGE 271
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 326 YIGDAFSSCYPKP--PEPVQPVIQEDTCNCAPNAECRDGVCLCLPDYYGD 373
Y GDAF C K P+ V PV+ C NAE + Y+G+
Sbjct: 229 YFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGE 278
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 135 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 185
CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 69 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECE 112
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 135 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 185
CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 78 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECE 121
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D ++ C +
Sbjct: 7 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEE-- 60
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
S +C+C GY + D +C P P P
Sbjct: 61 ------------QASVVCSCARGYTLADNGKACIPTGPYP 88
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 25/106 (23%)
Query: 132 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP---ECVQNNDCSNDKACINEKCQ--- 185
+PC +C + GS C CL Y G P C ECV +N C ND C+++ +
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECV-SNPCQNDATCLDQIGEFQC 68
Query: 186 ---------------DPCPGS-CGYNALCKVINHTPICTCPDGYTG 215
D C S C +N C + C CP G+TG
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 135 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 185
CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 9 CGPGKACRMLGGRPRCECAPDCSGLP-------ARLQVCGSDGATYRDECE 52
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 48
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
G C C +S +C+C GY + D +C P P P
Sbjct: 49 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 86
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 243 CYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCP 302
C SPC +C+D G +C+CL + G NC E C D
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 88
Query: 303 GSCGYGAVCTVINHSPICTCPEGY-IGDAFSSCYPKPPEP 341
G C C +S +C+C GY + D +C P P P
Sbjct: 89 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 25/106 (23%)
Query: 132 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP---ECVQNNDCSNDKACINEKCQ--- 185
+PC +C + GS C CL Y G P C ECV +N C ND C+++ +
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECV-SNPCQNDATCLDQIGEFQC 66
Query: 186 ---------------DPCPGS-CGYNALCKVINHTPICTCPDGYTG 215
D C S C +N C + C CP G+TG
Sbjct: 67 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.514
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,629,242
Number of Sequences: 62578
Number of extensions: 1389953
Number of successful extensions: 2949
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 2378
Number of HSP's gapped (non-prelim): 595
length of query: 895
length of database: 14,973,337
effective HSP length: 108
effective length of query: 787
effective length of database: 8,214,913
effective search space: 6465136531
effective search space used: 6465136531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)