RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13146
(895 letters)
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 54.7 bits (131), Expect = 1e-07
Identities = 51/313 (16%), Positives = 76/313 (24%), Gaps = 40/313 (12%)
Query: 376 VSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFI 435
+S C+ N P K+C+ LK + + C I P G S +
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 436 QCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPL 495
Q S N C C P + GS C E
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGV--CRCGPGWLGSQCEC-SEEDYRPSQQD 484
Query: 496 DKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGE--------PRIRCSKIPPR 547
+ + + V G C C C G+ C +
Sbjct: 485 ECSPREGQPVCSQRGEC----------LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGE 534
Query: 548 SCGYNAECKVINHTPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDGV 607
C + +C C C + G + + + C +C G
Sbjct: 535 MCSGHGQC----SCGDCLCDSDWTGYYCN-----CTTRTDTCMSSNGLLCSGRGKCECGS 585
Query: 608 CVCLPEFY----------GDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAI 657
CVC+ + + ECV N C C +
Sbjct: 586 CVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKEL 645
Query: 658 CDVINHAVSCNCP 670
D AV+C
Sbjct: 646 KDTGKDAVNCTYK 658
Score = 51.2 bits (122), Expect = 1e-06
Identities = 55/309 (17%), Positives = 79/309 (25%), Gaps = 46/309 (14%)
Query: 483 CRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNAN-CRVINHNAVCNCKPGFTGEPRIRC 541
C N P K+C+ K D S C + GF ++
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 542 SKIPPRSCGYNAECKVIN--------HTPICTCPQGYVGDA--FSGCYPKPPEPEQPVVQ 591
+ +C AE +C C G++G S +P + ++ +
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 592 EDTCNCVPNAECRDGVCVCLPEFYGDGY------VSCRPECVLNNDCPSNKACIRNKCKN 645
E C EC G CVC +G C + C C
Sbjct: 490 EGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCL- 548
Query: 646 PCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCV 705
C G CNC T + C +C G CV
Sbjct: 549 -CDSDWTGY-----------YCNCTTRTDTCM---------SSNGLLCSGRGKCECGSCV 587
Query: 706 CLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNP---CVPGTCGEGAICDVINHAVS 762
C+ P C + C K C+ K + TC C +V
Sbjct: 588 CIQPGSYGDTCEKCPTC--PDACTFKKECVECKKFDRGALHDENTCNRY--CRDEIESVK 643
Query: 763 CNCPPGTTG 771
G
Sbjct: 644 ELKDTGKDA 652
Score = 36.6 bits (84), Expect = 0.039
Identities = 55/373 (14%), Positives = 85/373 (22%), Gaps = 76/373 (20%)
Query: 162 NCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNAL-CKVINHTPICTCPDGYTGDAFSG 220
+ C+ N K+C+ K D S C P G+
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 221 CYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPS---CSCLPSYIGAPPNCR 277
C +C + NG+ C C P ++G+ C
Sbjct: 429 VTFDCD--------------CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCEC- 473
Query: 278 PECIQNSECPYDKACINEKCADPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPK 337
E + + + G C G C C G
Sbjct: 474 SEEDYRPSQQDECSPREGQPVCSQRGECLCGQ----------CVCHSSDFGK---ITGKY 520
Query: 338 PPEPVQPVIQEDTCNCAPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKL 397
++ C+ + +C G CLC D+ G C C +D + +
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGY---YC--NCTTRTDTCMSSNGLLC 575
Query: 398 KCKNPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGP 457
+ C G+C PG+ G +C P P C
Sbjct: 576 SGRGKCECGSC--------------VCIQPGSYGDTCEKC-----------PTCPDACTF 610
Query: 458 NSQCREVNKQAVCSCLPNYFG---SPPACRPECT---VNTDCPLDKACVNQKCVDPCPGS 511
+C C G C C + D C
Sbjct: 611 KKEC--------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDD 662
Query: 512 CGQNANCRVINHN 524
C +
Sbjct: 663 CVVRFQYYEDSSG 675
Score = 33.1 bits (75), Expect = 0.44
Identities = 38/303 (12%), Positives = 67/303 (22%), Gaps = 33/303 (10%)
Query: 24 CGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDPCPGTCGQ 83
C V+ + + D + + F+ C
Sbjct: 386 CMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNS 445
Query: 84 NANC--KVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQC 141
+ +C C PG+ G C ++ P + C P P
Sbjct: 446 HRCNNGNGTFECGVCRCGPGWLGS---QCEC-----SEEDYRPSQQDECSPREGQPVCSQ 497
Query: 142 RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVI 201
R C C + G C + C C + C
Sbjct: 498 RGECLCGQCVCHSSDFG------------KITGKYCECDDFSCVRYKGEMCSGHGQC--- 542
Query: 202 NHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSP 261
C C +TG + + + C CG + +
Sbjct: 543 -SCGDCLCDSDWTGYYCN--CTTRTDTCMSSNGLLCSGRGKC---ECGSCVCIQPGSYGD 596
Query: 262 SCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGA-VCTVINHSPIC 320
+C P+ + EC++ + C C + + C
Sbjct: 597 TCEKCPTCPD-ACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNC 655
Query: 321 TCP 323
T
Sbjct: 656 TYK 658
Score = 31.6 bits (71), Expect = 1.3
Identities = 30/195 (15%), Positives = 41/195 (21%), Gaps = 10/195 (5%)
Query: 18 PCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDPC 77
+ +C Q VCS C C + CV
Sbjct: 474 SEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGK-ITGKYCECDDFSCVRYK 532
Query: 78 PGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGP 137
C + C C C +TG YCN + CG
Sbjct: 533 GEMCSGHGQC----SCGDCLCDSDWTGY---YCNCTTRTDTCMSSNGLLCSGRGKCECGS 585
Query: 138 YSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSC-GYNA 196
+ +C P + ECV+ C C
Sbjct: 586 CVCIQPGSYGDTCEKCPTCPD-ACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKE 644
Query: 197 LCKVINHTPICTCPD 211
L CT +
Sbjct: 645 LKDTGKDAVNCTYKN 659
Score = 30.1 bits (67), Expect = 4.0
Identities = 45/241 (18%), Positives = 66/241 (27%), Gaps = 36/241 (14%)
Query: 620 VSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFV 679
+S C+ N P K+C+ K + + C P G S V
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 680 QSEQPVVQEDTCNCVPNAE--------CRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSN 731
Q PN+ GVC C P + G C EC + PS
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGS---QC--ECSEEDYRPSQ 482
Query: 732 K-ACIRNKCKNPCVP-GTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNP 789
+ C + + C G C G C C G + K + +
Sbjct: 483 QDECSPREGQPVCSQRGECLCGQ----------CVCHSSDFGK--ITGKYCECDDFSCVR 530
Query: 790 CQPSPCGPNSQCREVNKQAVCSCLPNYFG-----SPPACRPECTVNSDCPLNKACFNQKC 844
+ C + QC C C ++ G + + C C C
Sbjct: 531 YKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSC 586
Query: 845 V 845
V
Sbjct: 587 V 587
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 50.5 bits (120), Expect = 2e-06
Identities = 45/320 (14%), Positives = 63/320 (19%), Gaps = 44/320 (13%)
Query: 128 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDP 187
+ P C + + + V D + Q
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 188 CPGSCGYNALCKVINHTP----ICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPC 243
C IC C GY G
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE--------------------CQTQ 464
Query: 244 YPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPG 303
S CR N S CS L + C + Y + C +
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD-VPGKLIYGQYCECDTINCERYN 523
Query: 304 SCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGV 363
G + C C G+ G A + + C+ CR V
Sbjct: 524 GQVCGGPGRGLCFCGKCRCHPGFEGSACQC-----ERTTEGCLNPRRVECSGRGRCRCNV 578
Query: 364 CLCLPDYYGDG---YVSCRPECVQNSDCPRNKACIK--------LKCKNPCVPGTCGEGA 412
C C Y C C + C K C + +G
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGR 638
Query: 413 ICDVVNHNVMCICPPGTTGS 432
C + C T
Sbjct: 639 TCKERD---SEGCWVAYTLE 655
Score = 48.2 bits (114), Expect = 1e-05
Identities = 50/346 (14%), Positives = 75/346 (21%), Gaps = 52/346 (15%)
Query: 446 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPL---DKACVNQ 502
Y + C N + + + + + L D V
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 503 KCVDPCPGSCGQNANCRVINH----NAVCNCKPGFTGEPRIRCSKIPPRSCGYNAECKVI 558
C +C C G+ G C S C+
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIG-KNCECQTQGRSSQELEGSCRKD 478
Query: 559 NHTPI-----------CTCPQGYVG-DAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDG 606
N++ I C C V G Y + C C G
Sbjct: 479 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG 538
Query: 607 VCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVP-GTCGEGAICDVINHAV 665
C C P F G C N + C G C
Sbjct: 539 KCRCHPGFEGS-----------ACQCERTTEGCLNPRRVECSGRGRCRCN---------- 577
Query: 666 SCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLN 725
C C G ++ C C + +G + P L+
Sbjct: 578 VCECHSGYQLP---LCQECPGCPSPCGK--YISCAEC-LKFEKGPFGKNCSAACPGLQLS 631
Query: 726 NDCPSNKACIRNKCKNPCVPGTCG---EGAICDVINHAVSCNCPPG 768
N+ + C + + C +G +I S C G
Sbjct: 632 NNPVKGRTC-KERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAG 676
Score = 46.6 bits (110), Expect = 3e-05
Identities = 51/334 (15%), Positives = 68/334 (20%), Gaps = 49/334 (14%)
Query: 511 SCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSCGYNAE------CKVINHTPIC 564
NA + C G T + R + + I
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 565 TCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDG---YVS 621
G+ D + E D C G+C C + G
Sbjct: 406 IRALGF-TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ 464
Query: 622 CRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQS 681
R L C + I CV G C C T
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNG 524
Query: 682 EQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDG----YVSCRPECVLNNDCPSNKACIRN 737
+ C C G C C P F G + +C C N
Sbjct: 525 Q-------VCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN 577
Query: 738 KC------------KNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPV 785
C + P P CG+ C A G G C
Sbjct: 578 VCECHSGYQLPLCQECPGCPSPCGKYISC-----AECLKFEKGPFGK---NC-----SAA 624
Query: 786 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 819
+ C+E + C Y
Sbjct: 625 CPGLQLSNNPVKGRTCKERDS---EGCWVAYTLE 655
Score = 40.5 bits (94), Expect = 0.003
Identities = 57/356 (16%), Positives = 75/356 (21%), Gaps = 56/356 (15%)
Query: 191 SCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGP 250
+NAL + T C +G T I +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDC----DGVQINVPITFQVKVTATECIQE 401
Query: 251 YSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAV 310
S G + CR + S C C
Sbjct: 402 QSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGIC------------R 449
Query: 311 CTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGVCLCLPDY 370
C C C + ++ C+ +C G CLC
Sbjct: 450 CDTGYIGKNCECQTQGRSSQELEGSCRKD--------NNSIICSGLGDCVCGQCLCHTSD 501
Query: 371 YGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMCICPPGTT 430
+ + +C R CG C C PG
Sbjct: 502 VPGKLIYGQYCECDTINCERYNGQ------------VCGGPGRGLCFCGK--CRCHPGFE 547
Query: 431 GSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS----PPACRPE 486
GS C Q T C +P R + VC C Y P C
Sbjct: 548 GS---AC----QCERTTEGC-LNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSP 599
Query: 487 CTVNTDCPLDKAC----VNQKCVDPCPGSCGQN--ANCRVINHNAVCNCKPGFTGE 536
C C + C CPG N R C +T E
Sbjct: 600 CGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLE 655
Score = 40.1 bits (93), Expect = 0.004
Identities = 48/335 (14%), Positives = 68/335 (20%), Gaps = 59/335 (17%)
Query: 15 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPL-----NKACF 69
Y + C N + + + + + L
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 70 NQKCVDPCPGTCGQNANCKVQNH--NPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPV 127
+C C + C + IC C GY G C QE
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCR 476
Query: 128 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDP 187
C C C C + + C +
Sbjct: 477 KDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR 532
Query: 188 CPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSP 247
CG C C G+ G A E E
Sbjct: 533 GLCFCG------------KCRCHPGFEGSACQ-------------CERTTEGCLNPRRVE 567
Query: 248 CGPYSQCRDINGSPSCSCLPSYIGA----PPNCRPECIQNSECPYDKAC----INEKCAD 299
C +CR C C Y P C C + C + C+
Sbjct: 568 CSGRGRCRC----NVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSA 623
Query: 300 PCPG-----SCGYGAVCTVINHSPICTCPEGYIGD 329
CPG + G C + C Y +
Sbjct: 624 ACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE 655
Score = 38.2 bits (88), Expect = 0.012
Identities = 33/248 (13%), Positives = 58/248 (23%), Gaps = 27/248 (10%)
Query: 596 NCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEG 655
N +P+ C + V N + + +
Sbjct: 350 NALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRAL 409
Query: 656 AICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGY 715
D++ V C D C G+C C + G
Sbjct: 410 GFTDIVTVQVLPQCECRCRDQ----------SRDRSLCHGKGFLECGICRCDTGYIGK-- 457
Query: 716 VSCRPECVLNNDCPSNKACIRNKCKNPC-VPGTCGEGAICDVINHAVSCNCPPGTTGSPF 774
+C + + +C ++ C G C G C C
Sbjct: 458 -NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----------QCLCHTSDVPGKL 506
Query: 775 VQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCP 834
+ + + + + CG + + C C P + GS C T P
Sbjct: 507 IYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQC-ERTTEGCLNP 563
Query: 835 LNKACFNQ 842
C +
Sbjct: 564 RRVECSGR 571
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 41.0 bits (96), Expect = 3e-04
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 14/146 (9%)
Query: 74 VDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPS 133
C C Q+++C + C C PG++ + I +D+ E
Sbjct: 2 SRGCARWCPQDSSC---VNATACRCNPGFSSFSEI----ITTPMETCDDINECATL-SKV 53
Query: 134 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCG 193
CG +S C + GS C C P Y + N C + ++E C C
Sbjct: 54 SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD----VDE-CSSG-QHQCD 107
Query: 194 YNALCKVINHTPICTCPDGYTGDAFS 219
+ +C + C C G+
Sbjct: 108 SSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 40.6 bits (95), Expect = 4e-04
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 186 DPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYP 245
C C ++ C + C C G++ + P +DI E
Sbjct: 3 RGCARWCPQDSSC---VNATACRCNPGFSSF------SEIITTPMETCDDINECATL-SK 52
Query: 246 SPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSC 305
CG +S C + GS C C P Y + + C ++E C+ C
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD----VDE-CSSG-QHQC 106
Query: 306 GYGAVCTVINHSPICTCPEGYIGDAFS 332
VC S C C G+
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 37.5 bits (87), Expect = 0.004
Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 20/150 (13%)
Query: 134 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCG 193
C S C + +C C P + +D INE C SCG
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDD-------INE-CATLSKVSCG 56
Query: 194 YNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPC--YPSPCGPY 251
+ C + C C GY + + + E+ + ++ C C
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFK-------NESENTCQDVDECSSGQHQCDSS 109
Query: 252 SQCRDINGSPSCSCLPSYIGAPPNCRPECI 281
+ C + GS SC C P + +
Sbjct: 110 TVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 41.7 bits (98), Expect = 3e-04
Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 37/183 (20%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---------- 87
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPS 246
+ + C ++ +C+C GYT + P P
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLADNG------------------KACIPTGPY 125
Query: 247 PCGPYSQCRDINGSPSCSCLPSYIGAPPNCRP-ECIQNSECPYDKACINEKCADPCPGSC 305
PCG + R + +P + ++ P G
Sbjct: 126 PCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDN 185
Query: 306 GYG 308
Sbjct: 186 NLT 188
Score = 39.0 bits (91), Expect = 0.003
Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 35/179 (19%)
Query: 17 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDP 76
+ C+ SPC +C++ + C+CL + G E C L+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCSLD----------- 87
Query: 77 CPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCG 136
+ C + ++ +C+C GYT K P P PCG
Sbjct: 88 ---NGDCDQFCHEEQNSVVCSCARGYTLA---DNGK-------------ACIPTGPYPCG 128
Query: 137 PYSQCRDIGGSPSCSCLPNYIGAPPNCRP-ECVQNNDCSNDKACINEKCQDPCPGSCGY 194
+ R + +P + + N ++ P G
Sbjct: 129 KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 35.9 bits (83), Expect = 0.031
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 41/186 (22%)
Query: 643 CKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDG 702
+ C+ TC +V + + Q +T C +C+DG
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEFWN---KYKDGDQCETSPCQNQGKCKDG 59
Query: 703 V----CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVIN 758
+ C CL F G N + + K C + C
Sbjct: 60 LGEYTCTCLEGFEGK-----------NCELFTRKLCSLDNGDC---------DQFCHEEQ 99
Query: 759 HAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 818
++V C+C G T + P P PCG + R A +
Sbjct: 100 NSVVCSCARGYTLA---DNG------KACIPTGPYPCGKQTLERRKRSVAQATSSSGEAP 150
Query: 819 SPPACR 824
+
Sbjct: 151 DSITWK 156
Score = 34.7 bits (80), Expect = 0.074
Identities = 21/176 (11%), Positives = 34/176 (19%), Gaps = 35/176 (19%)
Query: 645 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGV- 703
+ C C C +C C G G + + D +C + C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 100
Query: 704 ---CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHA 760
C C + C P P CG+ +
Sbjct: 101 SVVCSCARGYTLA---DNGKAC------------------IPTGPYPCGKQTLERRKRSV 139
Query: 761 VSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNY 816
G + P + N+ N
Sbjct: 140 AQATSSSGEAPDSITWKP--------YDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 30.9 bits (70), Expect = 1.1
Identities = 25/168 (14%), Positives = 40/168 (23%), Gaps = 32/168 (19%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
+ C SPC +C+D G +C+CL + G NC + C+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCS- 85
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAEC 359
+ C +S +C+C GY + I C
Sbjct: 86 --LDNGDCDQFCHEEQNSVVCSCARGYTLADNG----------KACIPTGPYPCGKQTLE 133
Query: 360 RDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPC 403
R D + + P
Sbjct: 134 RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPE 181
Score = 30.5 bits (69), Expect = 1.9
Identities = 17/112 (15%), Positives = 27/112 (24%), Gaps = 10/112 (8%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
C C ++V+C C G T + P P PCG +
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA---DNG------KACIPTGPYPCGKQTL 132
Query: 461 CREVNKQAVCSCLPNYFGSPPACRP-ECTVNTDCPLDKACVNQKCVDPCPGS 511
R A + +P + ++ P G
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGD 184
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 43.1 bits (101), Expect = 3e-04
Identities = 51/327 (15%), Positives = 83/327 (25%), Gaps = 34/327 (10%)
Query: 16 TNPCQPSPCGPNSQCREVNKQAV--CSCLPNYFGSPPACRP--ECTVNSDCPLNKACFNQ 71
+ C +PC P +QC + C + G+ C EC + D CF+
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPD-----ICFST 57
Query: 72 KCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCY 131
V C T +C C P Y G+ V + Q PE
Sbjct: 58 SKVPRCVNTQP-GFHCL--------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108
Query: 132 PSPCGPYSQCRDIG----GSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDP 187
C +++C +G C C Y G C + + +N C
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC-----GEDSDLDGWPNLNLVCATN 163
Query: 188 CPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSP 247
C + + N DG GDA +
Sbjct: 164 ATYHCIKDNCPHLPNSGQEDFDKDG-IGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDK 222
Query: 248 CGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGY 307
+C + + + + + + I + NE+ P +
Sbjct: 223 DEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVF------NERDNCPYVYNTDQ 276
Query: 308 GAVCTVINHSPICTCPEGYIGDAFSSC 334
CP + D
Sbjct: 277 RDTDGDGVGDHCDNCPLVHNPDQTDVD 303
Score = 42.3 bits (99), Expect = 8e-04
Identities = 58/323 (17%), Positives = 84/323 (26%), Gaps = 51/323 (15%)
Query: 240 INPCYPSPCGPYSQCRDI-NGSPSC-SCLPSYIGAPPNCRPECIQNSECPYDKACINEKC 297
+ C +PC P +QC +GS SC C ++G +C EC
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL----DEC--------ALV 50
Query: 298 ADPCPGSCGYGAVCTVINHSPIC-TCPEGYIGDAFSSCYPKPPEPVQPV------IQEDT 350
D C S C C CP Y G+ + + + V ++ T
Sbjct: 51 PDIC-FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKT 109
Query: 351 CNCAPNAECR--------DGVCLCLPDYYGDGYVSCRPECV-----QNSDCPRNKACIKL 397
NC +AEC C C Y GDG + + N C N +
Sbjct: 110 HNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCI 169
Query: 398 KCKNPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGP 457
K P +P + E D C G + L G
Sbjct: 170 KDNCPHLPNSGQED--FDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGD 227
Query: 458 NSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKA---CVNQKCVDPCPGSCGQ 514
C P C +D N++ P + Q
Sbjct: 228 R-----------CDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQ 276
Query: 515 NANCRVINHNAVCNCKPGFTGEP 537
+ NC +
Sbjct: 277 RDTDGDGVGDHCDNCPLVHNPDQ 299
Score = 32.7 bits (74), Expect = 0.59
Identities = 39/254 (15%), Positives = 66/254 (25%), Gaps = 43/254 (16%)
Query: 447 TNPCQPSPCGPNSQCREVNKQAV--CSCLPNYFGSPPACRP--ECTVNTDCPLDKACVNQ 502
+ C +PC P +QC + C + G+ C EC + D +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 503 KCVDPCPG-SCGQNANCRVINHNAVCNCKPGFTGEP----RIRCSKIPPRSCGYNAECKV 557
+CV+ PG C C P + G + +K + C CK
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 558 INH-----------------TPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPN 600
H C C GY GD + + + C
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICG--EDSDLDGWPNLNLVCATNAT 165
Query: 601 AECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDV 660
C C LP + + ++D ++ + +V
Sbjct: 166 YHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEV 225
Query: 661 INHAVSCNCPPGTT 674
+ +C
Sbjct: 226 GDRCDNCPYVHNPA 239
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 43.0 bits (100), Expect = 4e-04
Identities = 28/188 (14%), Positives = 41/188 (21%), Gaps = 22/188 (11%)
Query: 353 CAPNAECRDGVCLCLPDYYGDGYVSCRPECVQ---NSDCPRNKACIKLKCKNPCV-PGTC 408
C V + C+ C + C C +C C P
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDP 222
Query: 409 GEGAICDVVNHNVMCI--CPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNK 466
+ C + C+ CPP + + K
Sbjct: 223 TKCVACRNFYLDGRCVETCPPPY---------------YHFQDWRCVNFSFCQDLHHKCK 267
Query: 467 QAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAV 526
+ Y C PEC C+ PCP C + I+
Sbjct: 268 NSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTS 326
Query: 527 CNCKPGFT 534
G T
Sbjct: 327 AQELRGCT 334
Score = 39.9 bits (92), Expect = 0.004
Identities = 37/221 (16%), Positives = 54/221 (24%), Gaps = 16/221 (7%)
Query: 25 GPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFN-QKCVDPCPGTCGQ 83
+NK C G+ + + C+ C CP C
Sbjct: 139 SVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKS 198
Query: 84 NANCKVQNHNPICNCKPGYTGDPR----VYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYS 139
+ C + C + V C E P P C +S
Sbjct: 199 H-GCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 140 QCRDIGG---SPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNA 196
C+D+ + Y+ C PEC ++ C PCP C
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLE 316
Query: 197 LCKVINHTPI------CTCPDGYTGDAFSGCYPKPPEPPPP 231
K I+ CT +G G E
Sbjct: 317 GEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
Score = 37.6 bits (86), Expect = 0.020
Identities = 45/218 (20%), Positives = 61/218 (27%), Gaps = 16/218 (7%)
Query: 70 NQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNP 129
N++C D CPGT NC + N + +C K+ P
Sbjct: 152 NEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 130 CYPSPCGPYSQCRDIGGSPSC-SCLPNYIGAP--PNCRPECVQNNDCSNDKACINEKCQD 186
C+ G C C +C Y+ C P D +
Sbjct: 208 CHSECLG---NCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHH 264
Query: 187 PCPGSCGYNALCKVI-NHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYP 245
C S VI N+ I CP GYT ++ + P P +
Sbjct: 265 KCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
Query: 246 SPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQN 283
+ C INGS L I N E N
Sbjct: 325 TSAQELRGCTVINGS-----LIINIRGGNNLAAELEAN 357
Score = 33.0 bits (74), Expect = 0.56
Identities = 21/100 (21%), Positives = 24/100 (24%), Gaps = 6/100 (6%)
Query: 5 QCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPL 64
C P Y S C K + Y C PEC
Sbjct: 240 TCPPPYYHFQDWRCVNFSFC---QDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNS 296
Query: 65 -NKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYT 103
N C C+ PCP C K + G T
Sbjct: 297 SNLLC--TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 31.0 bits (69), Expect = 2.1
Identities = 38/190 (20%), Positives = 49/190 (25%), Gaps = 33/190 (17%)
Query: 501 NQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSCGYNAECKVINH 560
N++C D CPG+ NC V N + C K+ P C + C
Sbjct: 152 NEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQKVCPTICKSHG-CTAEGL 206
Query: 561 TPICTCPQGYVGDAFSG-------------CYPKPPEPEQPVVQEDTCNCVPNAECRDGV 607
C C P P CV + C+D
Sbjct: 207 CCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCP---PPYYHFQDWRCVNFSFCQDLH 263
Query: 608 CVC-------LPEFYGDGYVSCRPECVLNNDC-PSNKACIRNKCKNPCVPGTCGEGAICD 659
C ++ C PEC SN C C PC P C
Sbjct: 264 HKCKNSRRQGCHQYVIHNN-KCIPECPSGYTMNSSNLLCT--PCLGPC-PKVCHLLEGEK 319
Query: 660 VINHAVSCNC 669
I+ S
Sbjct: 320 TIDSVTSAQE 329
Score = 29.1 bits (64), Expect = 8.2
Identities = 24/174 (13%), Positives = 41/174 (23%), Gaps = 11/174 (6%)
Query: 693 CVPNAECRDGVCVCLPEFYGDGYVSCRPECVL---NNDCPSNKACIRNKCKNPCV-PGTC 748
C V + C+ C ++ C + C ++C C P
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDP 222
Query: 749 GEGAICDVINHAVSC--NCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNK 806
+ C C CPP +C + + C+ S Q N
Sbjct: 223 TKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNN 282
Query: 807 QAVCSCLPNYFGSP-----PACRPECTVNSDCPLNKACFNQKCVYTYSISTFCI 855
+ + C Y + C C + + I
Sbjct: 283 KCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 39.7 bits (93), Expect = 0.001
Identities = 28/172 (16%), Positives = 40/172 (23%), Gaps = 39/172 (22%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
VN C C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPS 246
G+C + + N C+ G S C + + +
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC----------------CSLGKAWGT 87
Query: 247 PCGPYSQCRDINGSPSCSCLPSYIGAPPNCRP----ECIQNSECPYDKACIN 294
PC C + P EC + CIN
Sbjct: 88 PCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 38.5 bits (90), Expect = 0.003
Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 18/116 (15%)
Query: 70 NQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNP 129
CVD G C + + N + C+ + G C +
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------------CSLGK 83
Query: 130 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP----ECVQNNDCSNDKACIN 181
+ +PC C + P EC + CIN
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 32.7 bits (75), Expect = 0.25
Identities = 25/163 (15%), Positives = 36/163 (22%), Gaps = 34/163 (20%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
+N C C + GS C C P + P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAEC 359
G+C N C+ G S C + + C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------CSLGKAWGTPCEMCPAV 95
Query: 360 RDGV----CLCLPDYYGDGY-VSCRP--ECVQNSDCPRNKACI 395
C + + V EC + + CI
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 31.6 bits (72), Expect = 0.60
Identities = 18/139 (12%), Positives = 32/139 (23%), Gaps = 33/139 (23%)
Query: 79 GTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPY 138
T + NC + IC+C P + +P C
Sbjct: 9 PTTCISGNCVNTPGSYICDCPPDFELNPT-------------RVGCVDTRSG---NCYLD 52
Query: 139 SQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALC 198
+ R G +CS + +C C C
Sbjct: 53 IRPRGDNGDTACSNEIGVGVSKASC---CCSLGKA--------------WGTPCEMCPAV 95
Query: 199 KVINHTPICTCPDGYTGDA 217
+ +C +G+ +
Sbjct: 96 NTSEYKILCPGGEGFRPNP 114
Score = 28.5 bits (64), Expect = 5.6
Identities = 29/178 (16%), Positives = 43/178 (24%), Gaps = 33/178 (18%)
Query: 403 CVPGTCGEGAICDVVNHNVMCICPPGTTGSPF-IQCKPILQEPVYTNPCQPSPCGPNSQC 461
C+ T C + +C CPP +P + C C + +
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDT-------RSG---NCYLDIRP 55
Query: 462 REVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVI 521
R N CS S +C C C
Sbjct: 56 RGDNGDTACSNEIGVGVSKASC---CCSLGKA--------------WGTPCEMCPAVNTS 98
Query: 522 NHNAVCNCKPGFTGEP-RIRCSKI----PPRSCGYNAECKVINHTPICTCPQGYVGDA 574
+ +C GF P + I +C + C CP GY +
Sbjct: 99 EYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 156
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 39.4 bits (91), Expect = 0.005
Identities = 20/167 (11%), Positives = 39/167 (23%), Gaps = 5/167 (2%)
Query: 128 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECVQNNDCSNDKACINEKC 184
N C + G C D+ C C + EC + CS + C+N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEG 58
Query: 185 QDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCY 244
C G+ + + + + +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 245 PSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKA 291
D++ CS + ++ + P A
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165
Score = 35.2 bits (80), Expect = 0.10
Identities = 20/148 (13%), Positives = 30/148 (20%), Gaps = 19/148 (12%)
Query: 241 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADP 300
N C + G C D+ C C + C EC C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC-------- 49
Query: 301 CPGSCGYGAVCTVINHSPICTCPEGYIGDAFS-SCYPKPPEPVQPVIQEDTCNCAPNAEC 359
+C + C C EG+ D + +C
Sbjct: 50 -------SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 360 RDGVCLCLPDYYGDGYVSCRPECVQNSD 387
+ + SD
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSD 130
Score = 33.3 bits (75), Expect = 0.34
Identities = 17/145 (11%), Positives = 33/145 (22%), Gaps = 8/145 (5%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
N C+ G +C+ + C+CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 461 CREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 520
C + C C + P + + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Query: 521 INHNAVCNCKPGFTGEPRIRCSKIP 545
+ I
Sbjct: 113 NVVALDTEVASNRIYWSDLSQRMIC 137
Score = 31.4 bits (70), Expect = 1.3
Identities = 17/137 (12%), Positives = 30/137 (21%)
Query: 645 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVC 704
N C+ G +C+ + C CP G + E +D C +G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 705 VCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCN 764
C E + + + K A+
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 765 CPPGTTGSPFVQCKPIQ 781
+ + I
Sbjct: 121 VASNRIYWSDLSQRMIC 137
Score = 31.0 bits (69), Expect = 1.9
Identities = 17/117 (14%), Positives = 29/117 (24%), Gaps = 10/117 (8%)
Query: 741 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQ 800
N C+ G +C+ + C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 801 CREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVYTYSISTFCIWY 857
C + C C + P C + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 107
Score = 30.6 bits (68), Expect = 2.2
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 5/116 (4%)
Query: 17 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPAC---RPECTVNSDCPLNKACFNQKC 73
N C + G + C ++ C C + EC C + C N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEG 58
Query: 74 VDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNP 129
C G + + + + + + R +P N
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
Score = 30.6 bits (68), Expect = 2.4
Identities = 17/143 (11%), Positives = 30/143 (20%), Gaps = 8/143 (5%)
Query: 299 DPC-PGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNA 357
+ C + G VC + C CP+G+ A C +D C+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-------QDPDTCSQLC 53
Query: 358 ECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVV 417
+G C + + S K
Sbjct: 54 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 113
Query: 418 NHNVMCICPPGTTGSPFIQCKPI 440
+ + + I
Sbjct: 114 VVALDTEVASNRIYWSDLSQRMI 136
Score = 30.2 bits (67), Expect = 3.0
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 22/139 (15%)
Query: 186 DPC-PGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCY 244
+ C + G + +C + C CPDG+ A C E I+ C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC----------------EDIDECQ 44
Query: 245 -PSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPG 303
P C C ++ G C C + P C Y +
Sbjct: 45 DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLD 100
Query: 304 SCGYGAVCTVINHSPICTC 322
Y ++ + +
Sbjct: 101 RSEYTSLIPNLRNVVALDT 119
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 39.4 bits (91), Expect = 0.005
Identities = 30/154 (19%), Positives = 42/154 (27%), Gaps = 18/154 (11%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
C + G +C+ I G+ C+C Y C +EC + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQ----- 55
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGDA-FSSCYPKPPEPVQPVIQEDTCNCAPNAE 358
CT + C C GY SC PEPV
Sbjct: 56 ----------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 359 CRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNK 392
+ L + R E V SD ++
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 36.7 bits (84), Expect = 0.032
Identities = 22/143 (15%), Positives = 34/143 (23%), Gaps = 18/143 (12%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
C + G +C+ I G+ C+C Y C N+C+ + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQ----- 55
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPS 246
C C C GY K P P I P
Sbjct: 56 ----------GCTNSEGAFQCWCEAGYELRP-DRRSCKALGPEPVLLFANRIDIRQVLPH 104
Query: 247 PCGPYSQCRDINGSPSCSCLPSY 269
++ + +
Sbjct: 105 RSEYTLLLNNLENAIALDFHHRR 127
Score = 34.4 bits (78), Expect = 0.17
Identities = 19/144 (13%), Positives = 32/144 (22%), Gaps = 7/144 (4%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
C G C ++ V C C G + + + E C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 461 CREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRV 520
C C C Y P + L ++ + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 521 INHNAVCNCKPGFTGEPRIRCSKI 544
+ + + +I
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRI 140
Score = 33.6 bits (76), Expect = 0.31
Identities = 29/162 (17%), Positives = 44/162 (27%), Gaps = 25/162 (15%)
Query: 16 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVD 75
C + G +C+ + C+C Y + + C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLT--------------EDGRTCQDVNECA 48
Query: 76 PCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPC 135
G C Q C C C+ GY P K PEPV
Sbjct: 49 E-EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALG--------PEPVLLFANRID 97
Query: 136 GPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDK 177
+ + L N I + R E V +D + D+
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 31.3 bits (70), Expect = 1.6
Identities = 18/124 (14%), Positives = 30/124 (24%), Gaps = 17/124 (13%)
Query: 447 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVD 506
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 507 PCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSCGYNAECKVINHTPICTC 566
G C Q C C C+ G+ P R K ++ +
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 567 PQGY 570
+
Sbjct: 106 SEYT 109
Score = 30.9 bits (69), Expect = 1.8
Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 7/132 (5%)
Query: 741 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQ 800
C G C +I AV C C G + + E C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 801 CREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVYTYSISTFCIWYTVA 860
C C C Y P + L + + V + + +
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 861 GVFLNNWLHSWN 872
++ H
Sbjct: 117 NAIALDFHHRRE 128
Score = 30.9 bits (69), Expect = 2.1
Identities = 22/101 (21%), Positives = 26/101 (25%), Gaps = 13/101 (12%)
Query: 645 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRD-GV 703
C G C +I AV C C G + ED C EC + G
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYR-----------LTEDGRTCQDVNECAEEGY 52
Query: 704 CVCLPEFYGDGYV-SCRPECVLNNDCPSNKACIRNKCKNPC 743
C + C L D S KA
Sbjct: 53 CSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFA 93
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.4 bits (87), Expect = 0.017
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 128 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECVQNNDCSNDKACINEKC 184
+PC PC C+D +C+C P Y G+ NC + EC C+ +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 185 QDPCPGSCGYNALCKVINHTPICTCPDG 212
C + GY P C G
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 34.7 bits (80), Expect = 0.13
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 448 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDP 507
+PC PC N C++ C+C P Y GS +C +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS------------NC----ELAKNECHPE 49
Query: 508 CPGSCGQNANCRVINHNAVCNCKPGFT-GEPRIRCSKIPPRSCG 550
C C + C+C G+ GE +C +CG
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 34.3 bits (79), Expect = 0.16
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 241 NPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNC---RPECIQNSECPYDKACINEKC 297
+PC PC C+D +C+C P Y G+ NC + EC C+ +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 298 ADPCPGSCGYGAVCTVINHSPICTCPEG 325
+ C + GY P C G
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 34.3 bits (79), Expect = 0.17
Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 18/103 (17%)
Query: 17 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDP 76
+PC PC N C++ C+C P Y GS N +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS----------------NCELAKNECHPE 49
Query: 77 CPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPP 119
C C + C+C GY +
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 32.0 bits (73), Expect = 0.92
Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 741 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQ 800
+PC+ C C +C C PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 801 -CREVNKQAVCSCLPNYFGSPPACRPECTVNSDC 833
C + CSC Y + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 30.8 bits (70), Expect = 1.7
Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
+PC+ C C C C PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 461 -CREVNKQAVCSCLPNYFGSPPACRPECTVNTDC 493
C + CSC Y + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 28.9 bits (65), Expect = 6.7
Identities = 18/105 (17%), Positives = 24/105 (22%), Gaps = 14/105 (13%)
Query: 645 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVC 704
+PC+ C C +C C PG + C N EC
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPG-------------YEGSNCELAKN-ECHPERT 51
Query: 705 VCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCG 749
F G S C + + C T
Sbjct: 52 DGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 37.5 bits (86), Expect = 0.026
Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 9/110 (8%)
Query: 704 CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRN-KCKNPCVPGTCGEGAICDVINHAVS 762
+ + V +D P N + G C G +C V++
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 763 CNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSC 812
C+C + G C ++++ + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 36.4 bits (83), Expect = 0.050
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 9/110 (8%)
Query: 364 CLCLPDYYGDGYVSCRPECVQNSDCPRN-KACIKLKCKNPCVPGTCGEGAICDVVNHNVM 422
+ + V+ D P N + G C G +C VV+ +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 423 CICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSC 472
C C + G C ++++ + S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 36.0 bits (82), Expect = 0.069
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 608 CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRN-KCKNPCVPGTCGEGAICDVINHAVS 666
+ + V +D P N + G C G +C V++
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 667 CNCP-PGTTGSPFVQSEQPVV 686
C+C G G Q ++ +
Sbjct: 213 CDCSRTGFRGKDCSQGKEEYI 233
Score = 33.7 bits (76), Expect = 0.35
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 17/110 (15%)
Query: 734 CIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPS 793
IR+ + G + S P G +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAG----------------EEGEGG 196
Query: 794 PCGPNSQCREVNKQAVCSC-LPNYFGSPPACRPECTVNSDCPLNKACFNQ 842
C C V+ QAVC C + G + E + + C++
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.5 bits (73), Expect = 0.84
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 274 PNCRPECIQNSECPYDKACINEKCADPC-PGSCGYGAVCTVINHSPICTCPE-GYIGDAF 331
P E + E P + + G C G VC+V++ +C C G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 332 SSCYP 336
S
Sbjct: 226 SQGKE 230
Score = 32.1 bits (72), Expect = 0.96
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 411 GAICDVV--NHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQA 468
G I DV + + + + C C V+ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 469 VCSC-LPNYFGSPPACRPECTVNTDCPLDKACVNQ 502
VC C + G + E + T + C +
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.1 bits (72), Expect = 1.2
Identities = 9/46 (19%), Positives = 10/46 (21%)
Query: 237 PEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQ 282
P C C C SC C + P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 31.7 bits (71), Expect = 1.3
Identities = 10/58 (17%), Positives = 14/58 (24%)
Query: 13 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFN 70
+ CQ C C + C C F P P T + +
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Score = 31.7 bits (71), Expect = 1.3
Identities = 10/58 (17%), Positives = 14/58 (24%)
Query: 784 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFN 841
+ CQ C C + C C F P P T + +
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Score = 31.7 bits (71), Expect = 1.3
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 444 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 487
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.7 bits (71), Expect = 1.4
Identities = 9/44 (20%), Positives = 9/44 (20%)
Query: 124 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 167
P C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.7 bits (71), Expect = 1.4
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 16 TNPCQPSPCGPNSQCREVNKQAVCSC-LPNYFGSPPACRPECTVNSDCPLNKACFNQ 71
+ C C V+ QAVC C + G + E + + C++
Sbjct: 190 GEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 31.0 bits (69), Expect = 2.5
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 125 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 167
E PC +PC CRD C C +C E
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 30.6 bits (68), Expect = 2.7
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 227 EPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSC-LPSYIGAPPNCRPECIQNSE 285
EPP E C C ++ C C + G + E +
Sbjct: 177 EPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATF 236
Query: 286 CPYDKACIN 294
+ C +
Sbjct: 237 KGSEYFCYD 245
Score = 30.6 bits (68), Expect = 3.1
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 238 EPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPEC 280
E PC +PC CRD C C + +C E
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL-GRSCEREA 658
Score = 30.6 bits (68), Expect = 3.4
Identities = 10/86 (11%), Positives = 16/86 (18%), Gaps = 1/86 (1%)
Query: 97 NCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPN 155
D P E C C + C C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTG 219
Query: 156 YIGAPPNCRPECVQNNDCSNDKACIN 181
+ G + E ++ C +
Sbjct: 220 FRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 30.2 bits (67), Expect = 3.9
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 15 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSD 61
PC +PC N CR+ + VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.2 bits (67), Expect = 3.9
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 786 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSD 832
PC +PC N CR+ + VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.2 bits (67), Expect = 4.5
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 50 PACRPECTVNSDCPLNKACFNQKCVDPC-PGTCGQNANCKVQNHNPICNC-KPGYTGDP 106
P E ++ + P + + + G C C V + +C+C + G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKD 224
Score = 29.8 bits (66), Expect = 5.8
Identities = 10/61 (16%), Positives = 18/61 (29%)
Query: 635 NKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCV 694
K + PC+ C +C + C+C + E V+ D +
Sbjct: 610 VKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFM 669
Query: 695 P 695
Sbjct: 670 K 670
Score = 29.8 bits (66), Expect = 5.8
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 161 PNCRPECVQNNDCSNDKACINEKCQDPC-PGSCGYNALCKVINHTPICTCPD-GYTGDAF 218
P E +++ N + + G C +C V++ +C C G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 219 SGCYP 223
S
Sbjct: 226 SQGKE 230
Score = 29.8 bits (66), Expect = 5.8
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 446 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSP 480
PC +PC N CR+ + VC C +
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Score = 29.8 bits (66), Expect = 5.9
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 481 PACRPECTVNTDCPLDKACVNQKCVDPC-PGSCGQNANCRVINHNAVCNC-KPGFTGEPR 538
P E ++ + P + + G C C V++ AVC+C + GF G+
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 539 IRCSKIPPRSCGYN 552
+ + + +
Sbjct: 226 SQGKEEYIATFKGS 239
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.0 bits (81), Expect = 0.036
Identities = 23/130 (17%), Positives = 34/130 (26%), Gaps = 37/130 (28%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C P+PC C+D S C C + G C + C+ + C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFC-- 99
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPS 246
+ +C+C GY + P P
Sbjct: 100 -----------KTGADSKVLCSCTTGYRLA------------------PDQKSCKPAVPF 130
Query: 247 PCGPYSQCRD 256
PCG S
Sbjct: 131 PCGRVSVSHS 140
Score = 31.9 bits (73), Expect = 0.36
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
+ C P+PC C+D S C C + G C ++ C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC----------NIK 91
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGD 329
T + +C+C GY
Sbjct: 92 NG---RCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 31.6 bits (72), Expect = 0.57
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 400 KNPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNS 459
+ C P C G +C ++ C C G G C+ + +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCE------LDATCNIKNGRCKQF 98
Query: 460 QCREVNKQAVCSCLPNYFGS 479
+ + +CSC Y +
Sbjct: 99 CKTGADSKVLCSCTTGYRLA 118
Score = 31.2 bits (71), Expect = 0.60
Identities = 23/128 (17%), Positives = 35/128 (27%), Gaps = 37/128 (28%)
Query: 17 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDP 76
+ C+P+PC C++ C C + G C +++ C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC-------------- 88
Query: 77 CPGTCGQNANCKVQNHNP-ICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPC 135
CK + +C+C GY K P P PC
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLA---PDQK-------------SCKPAVPFPC 132
Query: 136 GPYSQCRD 143
G S
Sbjct: 133 GRVSVSHS 140
Score = 31.2 bits (71), Expect = 0.61
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 740 KNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNS 799
+ C P C G +C ++ C C G G C+ + +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCE------LDATCNIKNGRCKQF 98
Query: 800 QCREVNKQAVCSCLPNYFGS 819
+ + +CSC Y +
Sbjct: 99 CKTGADSKVLCSCTTGYRLA 118
Score = 28.9 bits (65), Expect = 3.7
Identities = 18/113 (15%), Positives = 25/113 (22%), Gaps = 21/113 (18%)
Query: 74 VDPC-PGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYP 132
D C P C CK ++ C C+ G+ G C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK---NCELD-------------ATCNIK 91
Query: 133 SPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECV--QNNDCSNDKACINEK 183
+ CSC Y A + C C +
Sbjct: 92 NGRCKQFCKTGADSKVLCSCTTGYRLA--PDQKSCKPAVPFPCGRVSVSHSPT 142
Score = 28.1 bits (63), Expect = 6.5
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 34/118 (28%)
Query: 353 CAPNAECRDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTC 408
C C+D + C C + G C ++ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC----------NIKNG----R 94
Query: 409 GEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNK 466
+ + V+C C G + + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLA---PDQ------KSCKPAVPFPCGRVSVSHSPTT 143
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 36.4 bits (83), Expect = 0.046
Identities = 38/228 (16%), Positives = 57/228 (25%), Gaps = 9/228 (3%)
Query: 43 PNYFGSPPACRPECTVNSDCPLNKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGY 102
N A + N N+ + C C A K + N +
Sbjct: 121 KNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVE 180
Query: 103 TGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPN 162
+C K+ P C+ G SQ D +C Y+
Sbjct: 181 RCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTK--CVACRNFYLD--GR 236
Query: 163 CRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTP-----ICTCPDGYTGDA 217
C C D C+N C + + I CP GYT ++
Sbjct: 237 CVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNS 296
Query: 218 FSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSC 265
+ P P + + C INGS +
Sbjct: 297 SNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI 344
Score = 36.4 bits (83), Expect = 0.048
Identities = 28/189 (14%), Positives = 48/189 (25%), Gaps = 3/189 (1%)
Query: 351 CNCAPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGE 410
A +G + + C C + C N P +
Sbjct: 165 GKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTK 224
Query: 411 GAICDVVNHNVMCI--CPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQA 468
C + C+ CPP +C + C+ S Q N +
Sbjct: 225 CVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC 284
Query: 469 VCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCN 528
+ C Y + + CP + + S + C VIN + + N
Sbjct: 285 IPECPSGYTMNSSNLLCTPCLG-PCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
Query: 529 CKPGFTGEP 537
+ G
Sbjct: 344 IRGGNNLAA 352
Score = 32.1 bits (72), Expect = 0.82
Identities = 30/242 (12%), Positives = 59/242 (24%), Gaps = 21/242 (8%)
Query: 618 GYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSP 677
G V L + + I + ++ + + C I +
Sbjct: 115 GSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVI 174
Query: 678 FVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRN 737
Q + C V C+ C + + C +
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVA------- 227
Query: 738 KCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGP 797
C+N + G C E CPP +C + + C+ S
Sbjct: 228 -CRNFYLDGRCVE-------------TCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG 273
Query: 798 NSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVYTYSISTFCIWY 857
Q N + + C Y + + + +K + + + +
Sbjct: 274 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
Query: 858 TV 859
TV
Sbjct: 334 TV 335
Score = 31.0 bits (69), Expect = 2.1
Identities = 26/220 (11%), Positives = 40/220 (18%), Gaps = 34/220 (15%)
Query: 130 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPC- 188
C + G + + + C C + C+ + C + +C C
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHG-CTAEGLCCHSECLGNCS 217
Query: 189 -PGSCGYNALCKVINHTPIC--TCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYP 245
P C+ C TCP Y C
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVN---------------------- 255
Query: 246 SPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSC 305
+ Y+ C PEC
Sbjct: 256 --FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCH 313
Query: 306 GYGAVCTV-----INHSPICTCPEGYIGDAFSSCYPKPPE 340
T+ CT G + E
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAE 353
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 36.0 bits (83), Expect = 0.055
Identities = 14/133 (10%), Positives = 22/133 (16%), Gaps = 26/133 (19%)
Query: 117 PPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSND 176
E V +C C+ + C
Sbjct: 13 SEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------------RCDGV 57
Query: 177 KACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDI 236
+ + G ++ C P P
Sbjct: 58 TNTVTPEEVINTTGEGIFD-----------IRENANECESYLDVCCGLPEGGVLPTPSPT 106
Query: 237 PEPINPCYPSPCG 249
P + PS CG
Sbjct: 107 PPVVPVLKPSFCG 119
Score = 29.4 bits (66), Expect = 5.1
Identities = 10/136 (7%), Positives = 19/136 (13%), Gaps = 29/136 (21%)
Query: 229 PPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPY 288
E + +C C+ + C
Sbjct: 12 ASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------------RCDG 56
Query: 289 DKACINEKCADPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQE 348
+ + G + C P V P
Sbjct: 57 VTNTVTPEEVINTTGEGIFD-----------IRENANECESYLDVCCGLPEGGVLP---T 102
Query: 349 DTCNCAPNAECRDGVC 364
+ + C
Sbjct: 103 PSPTPPVVPVLKPSFC 118
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 35.0 bits (79), Expect = 0.055
Identities = 25/214 (11%), Positives = 41/214 (19%), Gaps = 34/214 (15%)
Query: 73 CVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYP 132
T N +++ C C G C + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXA-----CGE 58
Query: 133 SPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSC 192
+ C C+ Y C + Q +C CI E
Sbjct: 59 FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE---------- 108
Query: 193 GYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYS 252
+ C+C G + C
Sbjct: 109 -----YLSEIQSAGCSCAIGXVPNPEDEXXCTXTG------------ETACQLXCNTDNE 151
Query: 253 QCRDINGSPSCSCLPSYIGAPPNCRPECIQNSEC 286
C ++ G C C+ + C+
Sbjct: 152 VCXNVEGVYXCQCMEGFTFDXEXN--VCLGPHHH 183
Score = 30.8 bits (68), Expect = 1.3
Identities = 23/178 (12%), Positives = 39/178 (21%), Gaps = 24/178 (13%)
Query: 405 PGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQ--EPVYTNPCQPSPCGPNSQCR 462
T ++++ C+C G C+ + C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 463 EVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVIN 522
C C+ Y C + C S
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVC---------------QYXNCGESGECIVEYLSEI 113
Query: 523 HNAVCNCKPGFTGEPR-------IRCSKIPPRSCGYNAECKVINHTPICTCPQGYVGD 573
+A C+C G P + N C + C C +G+ D
Sbjct: 114 QSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 30.0 bits (66), Expect = 2.3
Identities = 24/190 (12%), Positives = 41/190 (21%), Gaps = 22/190 (11%)
Query: 184 CQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPC 243
+ N +++ C C +G + + C C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGX-------AC 56
Query: 244 YPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPG 303
+ C C+ Y C + Q C CI E
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE-------- 108
Query: 304 SCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGV 363
S C+C G + + + +T N
Sbjct: 109 -------YLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYX 161
Query: 364 CLCLPDYYGD 373
C C+ + D
Sbjct: 162 CQCMEGFTFD 171
Score = 30.0 bits (66), Expect = 2.6
Identities = 25/192 (13%), Positives = 44/192 (22%), Gaps = 25/192 (13%)
Query: 297 CADPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPK-----PPEPVQPVIQEDTC 351
+ + +++ C C EG + + ++C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 352 NCAPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEG 411
A+ C C+ Y +C + Q +C + CI
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXED-TCVLDVCQYXNCGESGECI---------------- 106
Query: 412 AICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCS 471
+ C C G +P CQ N C V C
Sbjct: 107 VEYLSEIQSAGCSCAIGXVPNP---EDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQ 163
Query: 472 CLPNYFGSPPAC 483
C+ +
Sbjct: 164 CMEGFTFDXEXN 175
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 31.3 bits (70), Expect = 0.074
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 623 RPECVLNNDCPSNKACIRNKCKNP 646
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.3 bits (70), Expect = 0.074
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 719 RPECVLNNDCPSNKACIRNKCKNP 742
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.11
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 53 RPECTVNSDCPLNKACFNQKCVDP 76
RPEC +NSDCP N+AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.1 bits (67), Expect = 0.17
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 484 RPECTVNTDCPLDKACVNQKCVDP 507
RPEC +N+DCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.0 bits (64), Expect = 0.45
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 277 RPECIQNSECPYDKACINEKCADP 300
RPEC+ NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.0 bits (64), Expect = 0.46
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 379 RPECVQNSDCPRNKACIKLKCKNP 402
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.6 bits (63), Expect = 0.59
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 164 RPECVQNNDCSNDKACINEKCQDP 187
RPECV N+DC +++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.2 bits (62), Expect = 0.90
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 824 RPECTVNSDCPLNKACFNQKC 844
RPEC +NSDCP N+AC NQKC
Sbjct: 1 RPECVLNSDCPSNQACVNQKC 21
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.077
Identities = 66/453 (14%), Positives = 112/453 (24%), Gaps = 162/453 (35%)
Query: 216 DAFSGCYPKPPEPPPPPQEDIPEPINP--------CY------PSPCGPYSQC------- 254
+ F+ P+P E +D EP P Y PS G + Q
Sbjct: 35 EQFNKILPEPTE--GFAADD--EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 255 --------RDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACIN-EKCADPCPGSC 305
DI+ + + L E I+N Y A I ++ D S
Sbjct: 91 FENCYLEGNDIH-ALAAK-LLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSA 144
Query: 306 GYGAVCTVINHSPICTC------PEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAEC 359
+ AV ++ + + Y + Y V +I+ +
Sbjct: 145 LFRAVGE--GNAQLVAIFGGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 360 RDGVCLCLPDYYGDGY--------VSCRPE-----CVQNSDCPRNK----ACIKLKCK-- 400
+ G S P+ + S CP A + K
Sbjct: 202 TLDA----EKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLL 256
Query: 401 --NP-----CVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKP----IL-------Q 442
P + G G +V + F +L
Sbjct: 257 GFTPGELRSYLKGATGHSQ--GLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 443 E--PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSP-P--ACRPECTVNTDCPLDK 497
E P + P PS + L N G P P + + ++
Sbjct: 312 EAYPNTSLP--PS--------------ILEDSLENNEGVPSPMLSIS-------NLTQEQ 348
Query: 498 ACVNQKCVDPCPGSCGQNANCRV--IN--HNAVCNCKPGFTGEPR-----------IRC- 541
Q V+ + +N N V +G P+ +
Sbjct: 349 V---QDYVNKTNSHLPAGKQVEISLVNGAKNLVV------SGPPQSLYGLNLTLRKAKAP 399
Query: 542 -----SKIPPRSCGYNAECKVINHT--PICTCP 567
S+IP ++ ++ P+ P
Sbjct: 400 SGLDQSRIP-----FSERKLKFSNRFLPV-ASP 426
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 35.6 bits (81), Expect = 0.089
Identities = 57/405 (14%), Positives = 105/405 (25%), Gaps = 31/405 (7%)
Query: 438 KPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDK 497
K + + +PCQ +PC N + + +C C +G C + +D
Sbjct: 488 KALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG--ENCEKQSPDYKSNAVDG 545
Query: 498 ACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSCGYNAECKV 557
C + ++ N K + +
Sbjct: 546 QWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCIND 605
Query: 558 INHTPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGD 617
P+ P+P PE ++ + + + CL F
Sbjct: 606 DEEMKEVDLPEIEA----DSGCPQPVPPENGFIRNEKQLYLVGEDVE---ISCLTGFETV 658
Query: 618 GYVSCRPECVLNND-CPSNKACIRNKCKNPCVPGTCGEGAICDV--INHAVSCNCPPGTT 674
GY R C+ + + C R +C P V + I ++ CP G
Sbjct: 659 GYQYFR--CLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFV 716
Query: 675 --GSPFVQSE-----QPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNND 727
G + P+ TC + + G C + G + PE +
Sbjct: 717 VAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLK-GHCQLGQKQSGSECICMSPEE--DCS 773
Query: 728 CPSNKACIRNKCKNPCVPGT-----CGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQY 782
S C+ + N + ++ +C G ++ +
Sbjct: 774 HHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSS 833
Query: 783 EPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 827
C C +C + C CL + C
Sbjct: 834 NSTKKESCGYDTCYDWEKCSASTSK--CVCLLPPQCFKGGNQLYC 876
Score = 31.4 bits (70), Expect = 1.8
Identities = 52/427 (12%), Positives = 94/427 (22%), Gaps = 34/427 (7%)
Query: 7 KPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNK 66
K +Q +PCQ +PC N + + +C C +G C + ++
Sbjct: 488 KALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG--ENCEKQSPDYKSNAVDG 545
Query: 67 ACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEP 126
C T ++ + N P K ++ E
Sbjct: 546 QWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKR----------------CEGEKRQEED 589
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
G D P P + E +
Sbjct: 590 CTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEI 649
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPS 246
C + + + PDG C P + P Y
Sbjct: 650 SC------LTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRI 703
Query: 247 PCGPYSQCRD---INGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPG 303
C + G +C + P + C +++ C +
Sbjct: 704 GESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSEC 763
Query: 304 SCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGV 363
C + +C P + + + C+DG
Sbjct: 764 ICMSPEEDCSHHSEDLCVFDTDS---NDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGR 820
Query: 364 CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMC 423
L +G + C + KC C C + + C
Sbjct: 821 QL----EWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGGNQLYC 876
Query: 424 ICPPGTT 430
+ +T
Sbjct: 877 VKMGSST 883
Score = 29.1 bits (64), Expect = 8.1
Identities = 54/430 (12%), Positives = 88/430 (20%), Gaps = 55/430 (12%)
Query: 96 CNCKPGYTGDPRVYCNKIPPR--PPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCL 153
P + C ++ +PC +PC + G C C
Sbjct: 464 FELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQ 523
Query: 154 PNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCG-------------------- 193
G NC + + D C +
Sbjct: 524 SGTYG--ENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCE 581
Query: 194 ---------YNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCY 244
++ + I + D P PP+ Y
Sbjct: 582 GEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLY 641
Query: 245 PSPCGPYSQCRD---INGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPC 301
C G CLP G EC + P
Sbjct: 642 LVGEDVEISCLTGFETVGYQYFRCLPD--GTWRQGDVECQRTECIKP--VVQEVLTITPF 697
Query: 302 PGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRD 361
G TCP+G++ S + P+ TC + +
Sbjct: 698 QRLYRIGESIE-------LTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLK- 749
Query: 362 GVCLCLPDYYGDGYVSCRPEC----VQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVV 417
G C G + PE C + C + +
Sbjct: 750 GHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKF-LAEKCLNNQQL 808
Query: 418 NHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYF 477
+ + C G ++ + C C +C + C CL
Sbjct: 809 HFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSK--CVCLLPPQ 866
Query: 478 GSPPACRPEC 487
+ C
Sbjct: 867 CFKGGNQLYC 876
Score = 29.1 bits (64), Expect = 8.6
Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 3/150 (2%)
Query: 695 PNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAIC 754
P A + + Y + C+ NN P+ +C C GT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 755 DVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLP 814
++ + S + C P+P +C +Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 815 NYFGSPPACRPECTVNSDCPLNKACFNQKC 844
+ C + + L + + C
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGC 623
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.4 bits (77), Expect = 0.093
Identities = 27/175 (15%), Positives = 47/175 (26%), Gaps = 52/175 (29%)
Query: 81 CGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQ 140
C + + + + + + C SPC +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKY----------------KDGDQCETSPCQNQGK 55
Query: 141 CRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKV 200
C+D G +C+CL + G +C + C + C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK------------NCELF---TRKLCSLDN---GDCDQFCHE 97
Query: 201 INHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCR 255
++ +C+C GYT D + P P PCG + R
Sbjct: 98 EQNSVVCSCARGYTLA------------------DNGKACIPTGPYPCGKQTLER 134
Score = 33.0 bits (76), Expect = 0.12
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
+ C SPC +C+D G +C+CL + G NC + C+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGD 329
C +S +C+C GY
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 32.3 bits (74), Expect = 0.26
Identities = 30/162 (18%), Positives = 45/162 (27%), Gaps = 41/162 (25%)
Query: 645 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGV- 703
C+ TC +V + + Q +T C +C+DG+
Sbjct: 10 RECMEETCSYEEAREVF-----EDSDKTNEF---WNKYKDGDQCETSPCQNQGKCKDGLG 61
Query: 704 ---CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHA 760
C CL F G +C E C + C ++
Sbjct: 62 EYTCTCLEGFEGK---NC--ELFTRKLCSLD---------------NGDCDQFCHEEQNS 101
Query: 761 VSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCR 802
V C+C G T + P P PCG + R
Sbjct: 102 VVCSCARGYTLA---DNG------KACIPTGPYPCGKQTLER 134
Score = 29.6 bits (67), Expect = 1.8
Identities = 16/79 (20%), Positives = 19/79 (24%), Gaps = 8/79 (10%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
+ C C C C C G G E C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCELFTRKLCSLDNGDCDQF 94
Query: 461 CREVNKQAVCSCLPNYFGS 479
C E VCSC Y +
Sbjct: 95 CHEEQNSVVCSCARGYTLA 113
Score = 29.2 bits (66), Expect = 2.6
Identities = 17/79 (21%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 741 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQ 800
+ C C C +C C G G C E C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NC-----ELFTRKLCSLDNGDCDQF 94
Query: 801 CREVNKQAVCSCLPNYFGS 819
C E VCSC Y +
Sbjct: 95 CHEEQNSVVCSCARGYTLA 113
Score = 29.2 bits (66), Expect = 3.1
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 35/158 (22%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
C+ TC +V + + C+ SPC +
Sbjct: 10 RECMEETCSYEEAREVF-----EDSDKTNEFW---------NKYKDGDQCETSPCQNQGK 55
Query: 461 CREVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQN-ANCR 519
C++ + C+CL + G C + T C G C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK------NCELFTR-------------KLCSLDNGDCDQFCH 96
Query: 520 VINHNAVCNCKPGFTGEP-RIRCSKIPPRSCGYNAECK 556
++ VC+C G+T C P CG +
Sbjct: 97 EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
Score = 28.0 bits (63), Expect = 6.9
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 34/126 (26%)
Query: 17 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDP 76
+ C+ SPC +C++ + C+CL + G E C L+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCSLD----------- 87
Query: 77 CPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCG 136
+ C + ++ +C+C GYT + P P PCG
Sbjct: 88 ---NGDCDQFCHEEQNSVVCSCARGYTLADN----------------GKACIPTGPYPCG 128
Query: 137 PYSQCR 142
+ R
Sbjct: 129 KQTLER 134
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.1 bits (76), Expect = 0.093
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 18/117 (15%)
Query: 171 NDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPP 230
+ + C+ + PC C + C + C C G+ G
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE--------- 51
Query: 231 PPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECP 287
C G C + G CSC P Y + +C + P
Sbjct: 52 -------VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 30.1 bits (68), Expect = 1.1
Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 237 PEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEK 296
P+ S C + C D GS SC C + G C+ + C D
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG--RFCQ-REVSFLNCSLDN------ 61
Query: 297 CADPCPGSCGYGAVCTVINHSPICTCPEGYIGD 329
G C C+C GY
Sbjct: 62 --------GGCTHYCLEEVGWRRCSCAPGYKLG 86
Score = 29.7 bits (67), Expect = 1.7
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 17/93 (18%)
Query: 124 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEK 183
P+ S C + C D GS SC C + G + ++
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG---------------RFCQREVSFL 55
Query: 184 CQDPCPGSCGYNALCKVINHTPICTCPDGYTGD 216
G C C C+C GY
Sbjct: 56 NCSLDNGGCT--HYCLEEVGWRRCSCAPGYKLG 86
Score = 29.3 bits (66), Expect = 2.1
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 499 CVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKI---PPRSCGYNAEC 555
C+ PC C + C + C+C+ G+ G R + G C
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68
Query: 556 KVINHTPICTCPQGYVGD 573
C+C GY
Sbjct: 69 LEEVGWRRCSCAPGYKLG 86
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.9 bits (79), Expect = 0.13
Identities = 28/194 (14%), Positives = 40/194 (20%), Gaps = 11/194 (5%)
Query: 435 IQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDCP 494
I L C + C +C+
Sbjct: 143 IVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 495 LDKACVNQKCVDPCPGSCGQN-ANCRVINHNAVC--NCKPGFTGEPRIRCSKIPPRSCGY 551
C + +C C G + CR A C C P P
Sbjct: 203 SPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQ-------MDV 255
Query: 552 NAECKVINHTPICT-CPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDGVCVC 610
N E K CP+ YV C + ++ C VC
Sbjct: 256 NPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNG 315
Query: 611 LPEFYGDGYVSCRP 624
+ +S
Sbjct: 316 IGIGEFKDSLSINA 329
Score = 34.1 bits (77), Expect = 0.20
Identities = 22/177 (12%), Positives = 40/177 (22%), Gaps = 4/177 (2%)
Query: 356 NAECRDGVCLCLPDYYGDGYVS--CRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAI 413
+ C +G C + C +C C +C C + +
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 414 CDVVNHNVMCI--CPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCS 471
C C CPP +P + E Y+ P + + V +
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 472 CLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCN 528
C + + +C S N ++
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISG 343
Score = 31.8 bits (71), Expect = 1.2
Identities = 27/190 (14%), Positives = 41/190 (21%), Gaps = 9/190 (4%)
Query: 16 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKAC------- 68
C + + ++ CS C +C P C
Sbjct: 172 NGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFR 231
Query: 69 FNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVN 128
C D CP N + NP G T + C + V
Sbjct: 232 DEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKK--CPRNYVVTDHGSCVRACGA 289
Query: 129 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPC 188
Y +C+ G C IG + N + I+
Sbjct: 290 DSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILP 349
Query: 189 PGSCGYNALC 198
G +
Sbjct: 350 VAFRGDSFTH 359
Score = 31.4 bits (70), Expect = 1.6
Identities = 21/175 (12%), Positives = 38/175 (21%), Gaps = 12/175 (6%)
Query: 149 SCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNAL-CKVINHTPIC 207
C +C + C + +C C G + L C+ C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 208 --TCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSC 265
TCP + + + P + P +GS +C
Sbjct: 237 KDTCPPLMLYNPTTYQM----DVNPEGKYSFGATCVKKCPRNYVVTD-----HGSCVRAC 287
Query: 266 LPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAVCTVINHSPIC 320
+ +C + S + N + I
Sbjct: 288 GADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 29.9 bits (66), Expect = 3.8
Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 8/167 (4%)
Query: 696 NAECRDGVCVCLPEFYGDGYVS--CRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAI 753
+ C +G C E C +C S C N+C C + +
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 754 CDVINHAVSC--NCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCS 811
C +C CPP +P + E Y+ P + + V +
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 812 CLPNYF----GSPPACRPECTVNSDCPLNKACFNQKCVYTYSISTFC 854
C + + C+ K + + +
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 32.8 bits (75), Expect = 0.17
Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 30/149 (20%)
Query: 18 PCQPSPCGPNSQCREVNKQA--VCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCV- 74
C P+PC C C C + P C+ + ++
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTD------PNCSSVVEVASDEEEPTSAGPC 55
Query: 75 --DPCP--GTCGQNANCKVQNHNP-ICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNP 129
+PC GTC + + +C C G+ G +C +N
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQ-------------HNINE 99
Query: 130 CYPSPCGPYSQCRDIGGSPSCSCLPNYIG 158
C PC C D+ + SC C ++G
Sbjct: 100 CEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 31.2 bits (71), Expect = 0.66
Identities = 32/148 (21%), Positives = 43/148 (29%), Gaps = 33/148 (22%)
Query: 402 PCVPGTCGEGAIC--DVVNHNVMCICPPGTTGS---PFIQCKPILQEPVYTNPCQPSPCG 456
C P C G IC + + + C CP G T ++ +EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 457 PNSQCREVNKQAV-------CSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCP 509
C C C + G C N ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHN--------------INECE 101
Query: 510 GS-CGQNANCRVINHNAVCNCKPGFTGE 536
C C + N C C F G
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 28.5 bits (64), Expect = 5.2
Identities = 31/134 (23%), Positives = 38/134 (28%), Gaps = 21/134 (15%)
Query: 693 CVPNAECRDGV------CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPG 746
C C G+ C C F S + S C N C N G
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNG---G 64
Query: 747 TC--GEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREV 804
TC E D C CP G G C+ N C+ PC C ++
Sbjct: 65 TCEISEAYRGDTFI-GYVCKCPRGFNGI---HCQ------HNINECEVEPCKNGGICTDL 114
Query: 805 NKQAVCSCLPNYFG 818
C C + G
Sbjct: 115 VANYSCECPGEFMG 128
Score = 27.8 bits (62), Expect = 9.0
Identities = 29/130 (22%), Positives = 41/130 (31%), Gaps = 32/130 (24%)
Query: 207 CTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPC-------GPYSQCRDING 259
C CPDG+T C + PC P+PC + D
Sbjct: 25 CECPDGFTDPN---CSSVVEVASDEEEP---TSAGPCTPNPCHNGGTCEISEAYRGDTFI 78
Query: 260 SPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAVCTVINHSPI 319
C C + G +C+ INE C C G +CT + +
Sbjct: 79 GYVCKCPRGFNG--IHCQHN-------------INE-CE---VEPCKNGGICTDLVANYS 119
Query: 320 CTCPEGYIGD 329
C CP ++G
Sbjct: 120 CECPGEFMGR 129
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 32.6 bits (75), Expect = 0.17
Identities = 32/139 (23%), Positives = 42/139 (30%), Gaps = 39/139 (28%)
Query: 192 CGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPY 251
C + C + C C GYTG +N C +PC
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP------------------RCEIDVNECVSNPCQND 56
Query: 252 SQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGS-CGYGAV 310
+ C D G C C+P Y G +C E D C S C +
Sbjct: 57 ATCLDQIGEFQCICMPGYEG--VHC------------------EVNTDECASSPCLHNGR 96
Query: 311 CTVINHSPICTCPEGYIGD 329
C + C CP G+ G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 32.6 bits (75), Expect = 0.19
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 741 NPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQ 800
N CV C A C C C PG G V C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCE------VNTDECASSPCLHNGR 96
Query: 801 CREVNKQAVCSCLPNYFGS 819
C + + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 32.6 bits (75), Expect = 0.23
Identities = 32/140 (22%), Positives = 44/140 (31%), Gaps = 35/140 (25%)
Query: 19 CQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDPCP 78
+PC +C C CL Y G P C ++ + ++ C N
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG------PRCEIDVNECVSNPCQN-------- 55
Query: 79 GTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPY 138
+A C Q C C PGY G V+C + C SPC
Sbjct: 56 -----DATCLDQIGEFQCICMPGYEG---VHCE-------------VNTDECASSPCLHN 94
Query: 139 SQCRDIGGSPSCSCLPNYIG 158
+C D C C + G
Sbjct: 95 GRCLDKINEFQCECPTGFTG 114
Score = 31.8 bits (73), Expect = 0.37
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 401 NPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQ 460
N CV C A C CIC PG G C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV---HCE------VNTDECASSPCLHNGR 96
Query: 461 CREVNKQAVCSCLPNYFGS 479
C + + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 30.3 bits (69), Expect = 1.1
Identities = 31/135 (22%), Positives = 44/135 (32%), Gaps = 30/135 (22%)
Query: 403 CVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCR 462
C C + C C G TG +C+ + N C +PC ++ C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGP---RCE------IDVNECVSNPCQNDATCL 60
Query: 463 EVNKQAVCSCLPNYFGSPPACRPECTVNTDCPLDKACVNQKCVDPCPGS-CGQNANCRVI 521
+ + C C+P Y G C ++ D C S C N C
Sbjct: 61 DQIGEFQCICMPGYEG------------VHCEVN--------TDECASSPCLHNGRCLDK 100
Query: 522 NHNAVCNCKPGFTGE 536
+ C C GFTG
Sbjct: 101 INEFQCECPTGFTGH 115
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 33.7 bits (77), Expect = 0.24
Identities = 47/277 (16%), Positives = 65/277 (23%), Gaps = 88/277 (31%)
Query: 299 DPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAE 358
D V ++ + T C
Sbjct: 114 DGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGG-------------CRNGGF 160
Query: 359 CRD-GVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVV 417
C + +C C ++G C+ C G +C
Sbjct: 161 CNERRICECPDGFHGP------------------------HCEKALCTPRCMNGGLCVTP 196
Query: 418 NHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYF 477
CICPPG G C + C C K C C P
Sbjct: 197 GF---CICPPGFYGV---NC---------DKANCSTTCFNGGTCFYPGK---CICPPGLE 238
Query: 478 GSPPACRPECTVNTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEP 537
G C + CP C C + C C G+ G+
Sbjct: 239 G------------EQCE----------ISKCPQPCRNGGKC---IGKSKCKCSKGYQGD- 272
Query: 538 RIRCSK-IPPRSCGYNAECKVINHTPICTCPQGYVGD 573
CSK + CG + C N C C +G+ G
Sbjct: 273 --LCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 31.7 bits (72), Expect = 0.86
Identities = 38/218 (17%), Positives = 49/218 (22%), Gaps = 48/218 (22%)
Query: 19 CQPSPCGPNSQCREVNKQAVCSCLPNYFG---SPPACRPECTVNSDCPLNKAC------F 69
+ + + F C C C + C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFH 174
Query: 70 NQKC-VDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVN 128
C C C C C C PG+ G C+K
Sbjct: 175 GPHCEKALCTPRCMNGGLCVTPG---FCICPPGFYGV---NCDK---------------- 212
Query: 129 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGA---PPNCRPECVQNNDCSNDKACI----- 180
+ C C G C C P G C C C C
Sbjct: 213 ANCSTTCFNGGTCFYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY 269
Query: 181 -NEKCQDP-CPGSCGYNALCKVINHTPICTCPDGYTGD 216
+ C P C CG + C N C C +G+ G
Sbjct: 270 QGDLCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 31.7 bits (72), Expect = 0.94
Identities = 43/234 (18%), Positives = 62/234 (26%), Gaps = 39/234 (16%)
Query: 506 DPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSK-IPPRSCGYNAECKVINHTPIC 564
D + + + + C + P C C N IC
Sbjct: 114 DGVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TCQQAECPGGCRNGGFC---NERRIC 167
Query: 565 TCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAEC-RDGVCVCLPEFYGD--GYVS 621
CP G+ G P C+ C G C+C P FYG +
Sbjct: 168 ECPDGFHGPHCEKALCTPR-------------CMNGGLCVTPGFCICPPGFYGVNCDKAN 214
Query: 622 CRPECVLNNDCPSNKACI------RNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTG 675
C C C CI +C+ P C G C + C C G G
Sbjct: 215 CSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKS---KCKCSKGYQG 271
Query: 676 SPFVQSEQPVVQEDTCNCVPNAECRD-GVCVCLPEFYGDGYVSCRPECVLNNDC 728
+PV C + C + C C ++G ++
Sbjct: 272 D---LCSKPV---CEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKH 319
Score = 31.4 bits (71), Expect = 1.2
Identities = 61/301 (20%), Positives = 82/301 (27%), Gaps = 47/301 (15%)
Query: 558 INHTPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVP-NAECRDGVCVCLPEFYG 616
+N T Y + S P V VP A CL + G
Sbjct: 56 MNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDG 115
Query: 617 DGYVSCRPECVLNNDCPSNKACIR----NKCKNPCVPGTCGEGAICDVINHAVSCNCPPG 672
+ + K C+ PG C G C+ C CP G
Sbjct: 116 VAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERR---ICECPDG 172
Query: 673 TTGSPFVQSEQPVVQEDTCNCVPNAEC-RDGVCVCLPEFYGD--GYVSCRPECVLNNDCP 729
G E+ + T C+ C G C+C P FYG +C C C
Sbjct: 173 FHGP---HCEKAL---CTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCF 226
Query: 730 SNKACI------RNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQCKPIQYE 783
CI +C+ P C G C + C C G G
Sbjct: 227 YPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKS---KCKCSKGYQG------------ 271
Query: 784 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQK 843
+ + P CG + C E NK C C + G C + L +
Sbjct: 272 DLCSKPVCEPGCGAHGTCHEPNK---CQCQEGWHG------RHCNKRYEASLIGTKHHHH 322
Query: 844 C 844
Sbjct: 323 H 323
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 32.5 bits (74), Expect = 0.27
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 446 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNTDC 493
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 32.5 bits (74), Expect = 0.29
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 15 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDC 62
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 32.5 bits (74), Expect = 0.29
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 786 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDC 833
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 30.5 bits (69), Expect = 1.5
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 129 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSN 175
C C +C + G+ +CSC P + G PEC D +
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDDDD 161
Score = 27.8 bits (62), Expect = 9.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 242 PCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNC 276
C C +C + G+ +CSC P + G P C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.1 bits (75), Expect = 0.39
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 13 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQ 71
+ CQ C C + C C F P P T + +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Score = 33.1 bits (75), Expect = 0.39
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 784 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQ 842
+ CQ C C + C C F P P T + +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Score = 33.1 bits (75), Expect = 0.45
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 444 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 487
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 32.3 bits (73), Expect = 0.81
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 124 PEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPEC 167
P C C C SC C + ++ G P C
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
Score = 32.3 bits (73), Expect = 0.84
Identities = 9/44 (20%), Positives = 10/44 (22%)
Query: 237 PEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPEC 280
P C C C SC C + P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 30.0 bits (67), Expect = 4.1
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 643 CKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQP 684
C +C +C SC+C + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 29.2 bits (65), Expect = 6.7
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 739 CKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPF 774
C +C +C SC+C + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.9 bits (73), Expect = 0.41
Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C SPC C+D S C CLP + G NC +D N C+
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHK---DDQLIC-VNENGGCEQ 100
Query: 187 PCPGSCGYNALCKVINHTPICTCPDGYTGD 216
C C C +GY+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
Score = 30.4 bits (69), Expect = 1.1
Identities = 23/90 (25%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
+ C SPC C+D S C CLP++ G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGD 329
C C C EGY
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
Score = 27.7 bits (62), Expect = 9.7
Identities = 30/163 (18%), Positives = 39/163 (23%), Gaps = 38/163 (23%)
Query: 643 CKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDG 702
+ C C ++ T F S Q + C C+D
Sbjct: 13 LERECKEEQCSFEEAREI------FKDAERTKL--FWISYSDGDQCASSPCQNGGSCKDQ 64
Query: 703 V----CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVIN 758
+ C CLP F G +C +D G C E D
Sbjct: 65 LQSYICFCLPAFEGR---NCETHK---DDQLIC----------VNENGGC-EQYCSDHTG 107
Query: 759 HAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQC 801
SC C G + V P PCG
Sbjct: 108 TKRSCRCHEGYSLL---ADG------VSCTPTVEYPCGKIPIL 141
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.8 bits (74), Expect = 0.46
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 124 PEPVNPCY--PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACIN 181
P C C +++CRD C C+ NY G C E K I
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 182 EKCQDPCPGSCGYNALCKVINHTPIC 207
+ V+ +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87
Score = 31.3 bits (70), Expect = 1.2
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 248 CGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSC-- 305
C +++CRD C C+ +Y G C E K I +
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 306 ---GYGAVCTVINHSPICTCPEG 325
Y + +++ I T PE
Sbjct: 75 DLHSYVVMNHGRSYTAISTIPET 97
Score = 30.1 bits (67), Expect = 2.9
Identities = 20/143 (13%), Positives = 30/143 (20%), Gaps = 31/143 (21%)
Query: 80 TCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVNPCYPSPCGPYS 139
C +A C+ C C YTG+ R C
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQ--------------------------CVAEG 47
Query: 140 QCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCK 199
+ + G P + + N P + GY+ L
Sbjct: 48 SPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTA--ISTIPETVGYSLLPL 105
Query: 200 VINHTPI---CTCPDGYTGDAFS 219
I + FS
Sbjct: 106 APIGGIIGWMFAVEQDGFKNGFS 128
Score = 28.6 bits (63), Expect = 8.9
Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 1/72 (1%)
Query: 547 RSCGYNAECKVINHTPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDG 606
C +AEC+ C C Y G+ C + + +
Sbjct: 13 HQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVGSSQVPVVF 71
Query: 607 VCVCLPEFYGDG 618
L +
Sbjct: 72 ENTDLHSYVVMN 83
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.6 bits (74), Expect = 0.53
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 95 ICNCKPGYTGDPRVYCNKI--PPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPS--C 150
I + T KI P RP E+ V P CR+ +P+ C
Sbjct: 351 ILSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKC 410
Query: 151 SCLPNYIGA---PPNCRPECVQNNDCSNDKACINEK 183
C P + G C P C C C+ +K
Sbjct: 411 CCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKK 446
Score = 32.3 bits (73), Expect = 0.81
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 330 AFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGVCLCLPDYYGD--GYVSCRPECVQNSD 387
+P Q + E + C G C C P + GD C P C
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGV 435
Query: 388 CPRNKACIKLKCKNPCVPGTCGEG 411
C R C+ CK + C +
Sbjct: 436 CVRPNKCL---CKKGYLGPQCEQV 456
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 30.4 bits (68), Expect = 0.65
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 128 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C + + C R + G+ CL + C P N C +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--APNMTCKDK---------- 52
Query: 187 PCPGSCGYNALCKVINHTPI-CTCPDGYTGDAFSGCY 222
G C A CK+ + I C C + F G +
Sbjct: 53 --NGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVF 87
Score = 28.5 bits (63), Expect = 3.2
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 512 CGQNANC-RVINHNAVCNCKPGFTGEPRIRCSKIPPRSCG-------YNAECKVINHTPI 563
+NA C R ++ C F + +C P +C AECK+ + I
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKED-AGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEI 70
Query: 564 -CTCPQGYVGDAFSGCY 579
C C + F G +
Sbjct: 71 VCKCTKEGSEPLFEGVF 87
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.9 bits (68), Expect = 0.78
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 18/95 (18%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
++ C + QC + +GS C C YI A C +E C+
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD--------------TDE-CSV 49
Query: 300 PCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSC 334
G+ C + CTC EG+ +C
Sbjct: 50 ---GNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 29.5 bits (67), Expect = 0.87
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 127 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR--PECVQNNDCSNDKACINEKC 184
++ C + QC + GS C C YI A C EC N C N C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGT-CKNV-- 61
Query: 185 QDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGC 221
G + CTC +G+ C
Sbjct: 62 ----IGG--FE-----------CTCEEGFEPGPMMTC 81
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.1 bits (72), Expect = 0.81
Identities = 35/196 (17%), Positives = 52/196 (26%), Gaps = 7/196 (3%)
Query: 61 DCPLNKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPRPPPQ 120
D N K C C K N + Y C K+ P +
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 121 EDVPEPVNPCYPSPCGPYSQCRDIGGSPSC-SCLPNYIGAPPNCRPECVQNNDCSNDKAC 179
E C+P G C +C +C Y C P C N C
Sbjct: 192 RACTENNECCHPECLG---SCSAPDNDTACVACRHYYYA--GVCVPACPPNTYRFEGWRC 246
Query: 180 INEKCQDPCPGSCGYNALCKVI-NHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPE 238
++ + ++ VI + + CP G+ + Y P E P P + +
Sbjct: 247 VDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEK 306
Query: 239 PINPCYPSPCGPYSQC 254
Q
Sbjct: 307 KTKTIDSVTSAQMLQG 322
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 30.1 bits (67), Expect = 0.81
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 20/101 (19%)
Query: 128 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C C S C R + C CL NY C N C+ +
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVE--NPNPTCNEN---------- 52
Query: 187 PCPGSCGYNALCKVINHTP-----ICTCPDGYTGDAFSGCY 222
G C +A C + C C + F G +
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIF 91
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 32.0 bits (73), Expect = 0.81
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 5/83 (6%)
Query: 225 PPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNS 284
P P P+ ++P+P P P Q G P +
Sbjct: 367 PYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADG-----LYPNPRERSSFYSCAA 421
Query: 285 ECPYDKACINEKCADPCPGSCGY 307
+ ++C C +
Sbjct: 422 GRLFQQSCPTGLVFSNSCKCCTW 444
Score = 30.8 bits (70), Expect = 2.2
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 111 NKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQN 170
P P+ +VP+P P P Q C + + P
Sbjct: 366 LPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTF------CQGKADGLYPNP--------- 410
Query: 171 NDCSNDKACINEKC-QDPCPGSCGYNALCKV 200
+ S+ +C + Q CP ++ CK
Sbjct: 411 RERSSFYSCAAGRLFQQSCPTGLVFSNSCKC 441
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 32.3 bits (72), Expect = 0.88
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 13/116 (11%)
Query: 52 CRPECTVNSDCPLNKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCN 111
R D A N D C C + C C C + G YC+
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGGL---YCD 564
Query: 112 KIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 167
+ P Q + + + GG S C G + C
Sbjct: 565 EPETSLPTQ------LKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGC 614
Score = 30.8 bits (68), Expect = 2.5
Identities = 15/100 (15%), Positives = 21/100 (21%), Gaps = 7/100 (7%)
Query: 276 CRPECIQNSECPYDKACINEKCADPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCY 335
R + A N D C C C C C E + G
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWGGLYCDEPE 567
Query: 336 PKPPEPVQPVIQEDTCN---CAPNAECRDGVCLCLPDYYG 372
P ++ N + VC +
Sbjct: 568 TSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLA 607
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.1 bits (67), Expect = 0.90
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 499 CVNQKCVDPCPGSCGQNANC-RVINHNAVCNCKPGFTGE-----PRIRCSKIPPRSCGYN 552
KC+D + +NA C R ++ C GF P + C
Sbjct: 8 SSAHKCID---TNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPE 64
Query: 553 AECKVIN-HTPICTCPQGYVGDAFSGCY 579
AEC + + C C + F G +
Sbjct: 65 AECTMDDKKEVECKCTKEGSEPLFEGVF 92
Score = 28.9 bits (64), Expect = 2.1
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 128 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 186
+ C + + C R + G+ CL + C P + C +
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA---SITCEEN---------- 57
Query: 187 PCPGSCGYNALCKVIN-HTPICTCPDGYTGDAFSGCY 222
G C A C + + C C + F G +
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVF 92
Score = 27.8 bits (61), Expect = 6.1
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 17/91 (18%)
Query: 16 TNPCQPSPCGPNSQCREVNK-QAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCV 74
+ C + N+ C CL + C + C N
Sbjct: 10 AHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---VPASITCEEN--------- 57
Query: 75 DPCPGTCGQNANCKVQNHNPI-CNCKPGYTG 104
G C A C + + + C C +
Sbjct: 58 ---NGGCAPEAECTMDDKKEVECKCTKEGSE 85
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.2 bits (72), Expect = 0.94
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 608 CVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSC 667
C+ L + C ++K C +KC PC C
Sbjct: 30 CLSLQITRISAFFQHFQNNGSLVWCQNHKQC--SKCLEPCKESGDLRKHQCQ-------S 80
Query: 668 NCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNND 727
C P + + G C + G +C C ++N+
Sbjct: 81 FCEPLFPKKSYECLTSCEFLKYILLVKQ------GDCPAPEKASGFA-AACVESCEVDNE 133
Query: 728 CPSNKACIRNKCKNPCVP 745
C K C N C + C
Sbjct: 134 CSGVKKCCSNGCGHTCQV 151
Score = 30.3 bits (67), Expect = 3.4
Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 27/147 (18%)
Query: 377 SCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQ 436
S VQ + C C+ L+ + N+ + C S +
Sbjct: 15 SLSAGSVQRARCASR--CLSLQITRISAFFQHFQ-------NNGSLVWCQNHKQCS---K 62
Query: 437 CKPILQEPVYTNP------CQPSPCGPNSQCRE---------VNKQAVCSCLPNYFGSPP 481
C +E C+P + +C + KQ C G
Sbjct: 63 CLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAA 122
Query: 482 ACRPECTVNTDCPLDKACVNQKCVDPC 508
AC C V+ +C K C + C C
Sbjct: 123 ACVESCEVDNECSGVKKCCSNGCGHTC 149
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 30.9 bits (70), Expect = 0.95
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 15 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 48
YT CQP C + +C E+ C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.9 bits (70), Expect = 0.95
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 446 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 479
YT CQP C + +C E+ C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.9 bits (70), Expect = 0.95
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 786 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 819
YT CQP C + +C E+ C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 31.8 bits (70), Expect = 1.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 223 PKPPEPPPPPQEDIPEPINPCYPSPCGP 250
P PP P P + E P P+P P
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAP 478
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 31.6 bits (71), Expect = 1.4
Identities = 59/562 (10%), Positives = 103/562 (18%), Gaps = 58/562 (10%)
Query: 2 PFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNY--FGSPPACRPECTVN 59
P KP Y + V K C ++ CT +
Sbjct: 300 PRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQD 359
Query: 60 SDCPLNKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYT--GDPRVYCNK----- 112
P G + VQ + C PGY
Sbjct: 360 GWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWS 419
Query: 113 IPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNND 172
PR + + + C Y+ A D
Sbjct: 420 PTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKD 479
Query: 173 CSNDKACINEKCQDPCPGSCGYNALCKVINH------------------TPICTCPDGYT 214
+ + + C P + T
Sbjct: 480 GWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNG 539
Query: 215 GDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRD---INGSPSCSCLPS-YI 270
CY + E P +P+ Y C+ I G S C
Sbjct: 540 WSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLS 599
Query: 271 GAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAVCT-------VINHSPICTCP 323
P C+ + P +N + G+ V ++ C
Sbjct: 600 PDLPICKEQVQSCGPPP---ELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV 656
Query: 324 EGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNA---------ECRDG-------VCLCL 367
+G + P ++ + C + C+
Sbjct: 657 DGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCI 716
Query: 368 PDYYGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMCICPP 427
+ + ++ + C + +C
Sbjct: 717 HGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCIN 776
Query: 428 GTTGSPFIQCKPILQEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 487
G +Q S + ++ C NY C
Sbjct: 777 GRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEI-TC 835
Query: 488 TVNTDCPLDKACVNQKCVDPCP 509
+ C P
Sbjct: 836 KDGRWQSIPLCVEKIPCSQPPQ 857
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 31.3 bits (70), Expect = 1.6
Identities = 50/393 (12%), Positives = 88/393 (22%), Gaps = 30/393 (7%)
Query: 347 QEDTCNCAPNA------ECRDGVCLCLPDYYG-DGYVSCRPECVQNSDCPRNKACIKLKC 399
E C C V C+P ++ DG V C + P+ + + +C
Sbjct: 54 DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRC 113
Query: 400 KN-PCVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKPILQEPVYTNPCQPSPCGPN 458
+ C+ + D ++ + CP T G QC P C
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDG 173
Query: 459 SQCREVNKQAVCSCLPNYFGSPPACRP---ECTVNTDCPLDKACVNQK-CVD-------- 506
S C L + G C C C C D
Sbjct: 174 SDEW----PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 229
Query: 507 --PCPGSCGQNANCRVINHNAVCN----CKPGFTGEPRIRCSKIPPRSCGYNAECKVINH 560
C Q ++ I+ + C+ CK + + + + I
Sbjct: 230 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITL 289
Query: 561 TPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYV 620
+C + + + C + +C +
Sbjct: 290 DKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 349
Query: 621 SCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGSPFVQ 680
EC + C + K C G +
Sbjct: 350 EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 409
Query: 681 SEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGD 713
+ + N D ++ D
Sbjct: 410 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 442
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 31.2 bits (70), Expect = 1.6
Identities = 45/231 (19%), Positives = 64/231 (27%), Gaps = 35/231 (15%)
Query: 595 CNCVPNAEC--RDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTC 652
CNC ++ D G C N + + C ++P
Sbjct: 318 CNCNEHSSSCHFDMAVFLATGNVSGG---VCDNCQHNTMGRNCEQCKPFYFQHPERDIRD 374
Query: 653 GEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYG 712
N C C P + + + + G C C G
Sbjct: 375 P--------NLCEPCTCDPAGSENGGICD---------GYTDFSVGLIAGQCRCKLHVEG 417
Query: 713 DGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTGS 772
+ C+ + C C GT G CD C C TG
Sbjct: 418 ERCDVCKE-GFYDLSAEDPYGCKSCACNPL---GTIPGGNPCDSETG--YCYCKRLVTGQ 471
Query: 773 PFVQCKPIQY-EPVYTNPCQPSPCGP----NSQCREVNKQAVCSCLPNYFG 818
QC P + + C+P C N+ C E + Q CSCLP+ G
Sbjct: 472 RCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQ--CSCLPHMIG 520
Score = 29.7 bits (66), Expect = 4.8
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 27/200 (13%)
Query: 403 CVPGTCGEGAICDVVNHNVMCICPPGTTGSPFIQCKP-------ILQEPVYTNPCQPSPC 455
C P + +V+ + C+C T G C E +N C+ C
Sbjct: 263 CAPVDGVNEEVEGMVHGH--CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 456 GPNSQCREVNKQAVCS-----------CLPNYFGSP-PACRPECTVNTDCPLDKACVNQK 503
+S + + C N G C+P + + + + +
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP 380
Query: 504 CVDPCPGS-----CGQNANCRVINHNAVCNCKPGFTGEPRIRCSK-IPPRSCGYNAECKV 557
C GS C + V C CK GE C + S CK
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 558 INHTPICTCPQGYVGDAFSG 577
P+ T P G D+ +G
Sbjct: 441 CACNPLGTIPGGNPCDSETG 460
Score = 29.3 bits (65), Expect = 7.0
Identities = 32/217 (14%), Positives = 49/217 (22%), Gaps = 25/217 (11%)
Query: 19 CQPSPCGPNSQCREVNKQAVCSCLPNYFGSP----------PACRPECTVNSDCPLNKAC 68
+ +P ++ E C C N G RP NS+ C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 69 FNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNK---IPPRPPPQEDVPE 125
NC+ G C P ++
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSGGVC--DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLC 378
Query: 126 PVNPCYPSPCGPYSQCRDIGG------SPSCSCLPNYIGAPPNCRPECVQNNDCSNDKAC 179
C P+ C + C C + G + E + + C
Sbjct: 379 EPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGC 438
Query: 180 INEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGD 216
+ C G+ C + T C C TG
Sbjct: 439 --KSCACNPLGTIPGGNPC--DSETGYCYCKRLVTGQ 471
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 30.7 bits (68), Expect = 1.7
Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 147 SPSCSCLPNYIGAPP---NCRPECVQNNDCSNDKA---CINEKCQDPCPGSCGYNALCKV 200
CL G + + N Q CPG C C
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC-- 161
Query: 201 INHTPICTCPDGYTGD 216
N IC CPDG+ G
Sbjct: 162 -NERRICECPDGFHGP 176
Score = 29.9 bits (66), Expect = 2.4
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 258 NGSPSCSCLPSYIGAPP---NCRPECIQNSEC---PYDKACINEKCADPCPGSCGYGAVC 311
CL G + + + P + CPG C G C
Sbjct: 102 VVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC 161
Query: 312 TVINHSPICTCPEGYIGD 329
N IC CP+G+ G
Sbjct: 162 ---NERRICECPDGFHGP 176
Score = 28.0 bits (61), Expect = 9.7
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 52 CRPECTVNSDC---PLNKACFNQKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGD 105
+ + P N F CPG C C N IC C G+ G
Sbjct: 123 VIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 15 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 48
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 446 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 479
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 786 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 819
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 28.6 bits (64), Expect = 5.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 508 CPGSCGQNANCRVINHNAVCNCKPGFTG 535
SC + C +N C C PGF+G
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSG 150
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 31.0 bits (69), Expect = 2.0
Identities = 23/140 (16%), Positives = 31/140 (22%), Gaps = 32/140 (22%)
Query: 691 CNCVPNAECRD-----GVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVP 745
C C +A C C G C+ P + I N C+P
Sbjct: 297 CKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIP 356
Query: 746 GTCGEGAICD-----------VINHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSP 794
G ++ V C CP TG C+
Sbjct: 357 SISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGI----------------LCEKLR 400
Query: 795 CGPNSQCREVNKQAVCSCLP 814
C C + Q
Sbjct: 401 CEEAGSCGSDSGQGAPPHGT 420
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 2.2
Identities = 41/279 (14%), Positives = 69/279 (24%), Gaps = 21/279 (7%)
Query: 593 DTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGT- 651
++ C+P D C CR V D A + C+ +
Sbjct: 135 NSSTCIPQLWACDNDPDCEDGSDEWPQ-RCRGLYVFQGDSSPCSAFEFHCLSGECIHSSW 193
Query: 652 -CGEGAICDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDG----VCVC 706
C G C + +C + C+ +C+D CV
Sbjct: 194 RCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREY--DCKDMSDEVGCVN 251
Query: 707 LPEFYGDGYVSCRP--------ECVLNNDCPSNKACIRNKC-KNPCVPGTCGEGAICDVI 757
+ G C C + DC +C N C+ G +C+ +
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL 311
Query: 758 NHAVSCNCPPGTTGSPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYF 817
C CP G +C+ I +P S N + + L +
Sbjct: 312 KIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 368
Query: 818 GSPPACRPECTVNSDCPLNKACFNQKCVYTYSISTFCIW 856
+ A + S+
Sbjct: 369 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 407
Score = 29.8 bits (66), Expect = 5.2
Identities = 21/150 (14%), Positives = 35/150 (23%), Gaps = 4/150 (2%)
Query: 162 NCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGC 221
N +C +D + NE + S C + C CPDG+ A C
Sbjct: 276 NMARDCRDWSDEPIKECGTNECLDNNGGCSHV----CNDLKIGYECLCPDGFQLVAQRRC 331
Query: 222 YPKPPEPPPPPQEDIPEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECI 281
P + + Y C Q + +Y+ +
Sbjct: 332 EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 391
Query: 282 QNSECPYDKACINEKCADPCPGSCGYGAVC 311
Y N + +
Sbjct: 392 TLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
Score = 29.0 bits (64), Expect = 8.5
Identities = 39/302 (12%), Positives = 61/302 (20%), Gaps = 22/302 (7%)
Query: 135 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEK----CQDPCPG 190
C C D C Y C CI+ C
Sbjct: 146 CDNDPDCEDGSDEWPQRCRGLY--VFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKD 203
Query: 191 SCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCYPSPCGP 250
C DG C E D E GP
Sbjct: 204 KSDEENCAVATCRPDEFQCSDGNCIHGSRQC---DREYDCKDMSD--EVGCVNVTLCEGP 258
Query: 251 YSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAV 310
S C+ N +C S+ P + NE + S V
Sbjct: 259 NKFK-----CHSGECITLDKV--CNMARDCRDWSDEPIKECGTNECLDNNGGCSH----V 307
Query: 311 CTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPNAECRDGVCLCLPDY 370
C + C CP+G+ A C + N +C+ L +
Sbjct: 308 CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 367
Query: 371 YGDGYVSCRPECVQNSDCPRNKACIKLKCKNPCVPGTCGEGAICDVVNHNVMCICPPGTT 430
+ ++ + + + + D + +
Sbjct: 368 TKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ 427
Query: 431 GS 432
Sbjct: 428 RM 429
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 2.6
Identities = 18/136 (13%), Positives = 34/136 (25%), Gaps = 21/136 (15%)
Query: 713 DGYVSCRP-ECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTG 771
+ S + + D S + N C+NP EG C V P
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEGVWCYV------AGKPGDFGY 87
Query: 772 SPFVQCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSP---PACRPECT 828
C+ + + G + + A + F +P + +C
Sbjct: 88 CDLNYCEE--------AVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCG 139
Query: 829 VNSDCPLNKACFNQKC 844
+ +
Sbjct: 140 LRPLFEKKSLEDKTER 155
Score = 30.2 bits (68), Expect = 3.0
Identities = 21/155 (13%), Positives = 35/155 (22%), Gaps = 32/155 (20%)
Query: 617 DGYVSCRP-ECVLNNDCPSNKACIRNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTTG 675
+ S + + D S + N C+NP EG C V P
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEGVWCYV------AGKPGDFGY 87
Query: 676 SPFVQSEQPVVQEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACI 735
E+ V +E+T + + R S
Sbjct: 88 CDLNYCEEAV-EEETGDGLDEDSDRAIEGAT---------------------ATSEYQTF 125
Query: 736 RNKCKNPCVPGTCGEGAICDVINHAVSCNCPPGTT 770
N CG + + + +
Sbjct: 126 FNPATFGSGEADCGLRPLFEKKSLEDKTERELLES 160
Score = 29.4 bits (66), Expect = 5.2
Identities = 11/124 (8%), Positives = 24/124 (19%), Gaps = 3/124 (2%)
Query: 449 PCQP-SPCGPNSQCREVNKQAVCSCLPNYFGSPPACR--PECTVNTDCPLDKACVNQKCV 505
PC + + + + + + N+ +P C V C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 506 DPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSCGYNAECKVINHTPICT 565
+ G + + CG + +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 566 CPQG 569
Sbjct: 155 RELL 158
Score = 28.7 bits (64), Expect = 9.7
Identities = 12/117 (10%), Positives = 20/117 (17%), Gaps = 8/117 (6%)
Query: 490 NTDCPLDKACVNQKCVDPCPGSCGQNANCRVINHNAVCNCKPGFTGEPRIRCSKIPPRSC 549
+ D V C +P + C V F C +
Sbjct: 50 HQDFNSAVQLVENFCRNP--DGDEEGVWCYV------AGKPGDFGYCDLNYCEEAVEEET 101
Query: 550 GYNAECKVINHTPICTCPQGYVGDAFSGCYPKPPEPEQPVVQEDTCNCVPNAECRDG 606
G + T Y + + + E
Sbjct: 102 GDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELL 158
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 4/146 (2%)
Query: 268 SYIGAPPNCRPECIQNSECPYDKACINEKCADPCPGSCGYGAVCTVINHSPICTCPEGYI 327
S+ C P C + ++E + + I S +
Sbjct: 112 SWFLVKEGCFPA-SAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRW 170
Query: 328 GDAFSSCYPKPPEPVQPVIQEDTC--NCAPNAECRDGVCLCLPDYYGDGYVSCRPECVQN 385
SS PP + V + C C+ + +C GVC C Y +C +
Sbjct: 171 IQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQG-TCVSNTPNH 229
Query: 386 SDCPRNKACIKLKCKNPCVPGTCGEG 411
S+ G G G
Sbjct: 230 SEMFDRFEGKLSPLWYKITGGQVGTG 255
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 28.9 bits (65), Expect = 2.9
Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 38/153 (24%)
Query: 125 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKC 184
EPV+PC+ + C Y S C C + P + C C
Sbjct: 2 EPVDPCFRANCE-YQCQPLDQTSYLCVCAEGFAPIP---------HEPHRCQMFCNQTAC 51
Query: 185 QDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPINPCY 244
C + + C CP+GY D C DI E N +
Sbjct: 52 PADCDPNTQAS-----------CECPEGYILDDGFIC------------TDIDECENGGF 88
Query: 245 PSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCR 277
S C ++ G+ C C P A
Sbjct: 89 CS-----GVCHNLPGTFECICGPDSALAGQIGT 116
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 30.5 bits (68), Expect = 3.0
Identities = 15/111 (13%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 135 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGY 194
C ++ G P C + P + C + D S
Sbjct: 235 CVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESP 294
Query: 195 NALCKVINHT-----PICTCPDGYTGDAFSGCYPKPPEPPPPPQEDIPEPI 240
C C C +G+ PP P +
Sbjct: 295 CLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGM 345
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET:
OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Length = 172
Score = 29.1 bits (65), Expect = 3.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 664 AVSCNCPPGTTGSPFVQSEQPVV 686
AV+ + P GT+GSP V V+
Sbjct: 110 AVTLDYPTGTSGSPIVDKNGDVI 132
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 29.4 bits (67), Expect = 5.1
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 15/44 (34%)
Query: 470 CSCLPNYFGSPPACRPECTVNTD-CPLDKA------CVNQKCVD 506
C C +YFG+ P NT CP+ N+ V+
Sbjct: 22 CGCRADYFGAEP--------NTHTCPVCLGLPGALPVPNRVAVE 57
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.5 bits (64), Expect = 5.5
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 240 INPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEKCAD 299
I+ C SPC C++ GS C C + CI+ + + I+ +C
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 300 PCPGSCGYGAVCTVINH---------SPICTCPEGYIGDAFSSC 334
G+ C+ + C +GY + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase;
structural genomics, csgid; 1.70A {Bacillus anthracis}
PDB: 3cj8_A*
Length = 240
Score = 29.0 bits (65), Expect = 6.2
Identities = 21/118 (17%), Positives = 28/118 (23%), Gaps = 22/118 (18%)
Query: 591 QEDTCNCVPNAECRDGVCVCLPEFYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPG 650
+ P A RD V GD V +N I
Sbjct: 88 KGIKARIEPGAIIRDHV------EIGDNAVIMMN-ATINIGA-----VIGEGS------- 128
Query: 651 TCGEGAI---CDVINHAVSCNCPPGTTGSPFVQSEQPVVQEDTCNCVPNAECRDGVCV 705
A+ + G S +PV+ ED N +GV V
Sbjct: 129 MIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTV 186
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 29.6 bits (65), Expect = 6.3
Identities = 40/364 (10%), Positives = 72/364 (19%), Gaps = 13/364 (3%)
Query: 5 QCKPIQYEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPL 64
C + NP + V C N+ +C C +
Sbjct: 233 ACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVE 292
Query: 65 NKACFN--------QKCVDPCPGTCGQNANCKVQNHNPICNCKPGYTGDPRVYCNKIPPR 116
K D +A ++ G+ I
Sbjct: 293 ENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGD 352
Query: 117 PPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSND 176
P + +P + +I P + + +
Sbjct: 353 PYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLI 412
Query: 177 KACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEPPPPPQEDI 236
+ +++ +C FS + E+
Sbjct: 413 LKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENC 472
Query: 237 PEPINPCYPSPCGPYSQCRDINGSPSCSCLPSYIGAPPNCRPECIQNSECPYDKACINEK 296
C + SC +C + E D C+ +
Sbjct: 473 TAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICV--E 530
Query: 297 CADPCPGSCGYGAVCTVINHSPICTCPEGYIGDAFSSCYPKPPEPVQPVIQEDTCNCAPN 356
C C C C G +C K P+ +Q P+
Sbjct: 531 CDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGP---NCVEKCPDGLQGANSFIFKYADPD 587
Query: 357 AECR 360
EC
Sbjct: 588 RECH 591
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.9 bits (64), Expect = 7.8
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 170 NNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYT 214
N C N CQ C + N + C CPDG
Sbjct: 267 VNWCE-RTTLSNGGCQYLCLPAPQINP----HSPKFTCACPDGML 306
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 29.0 bits (65), Expect = 8.2
Identities = 15/137 (10%), Positives = 29/137 (21%), Gaps = 15/137 (10%)
Query: 18 PCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACFNQKCVDPC 77
+ S + C +++ K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYH----------DTDFLGEELDIVAAKSHEAC 317
Query: 78 PGTCGQNANCKVQNHNP---ICNCKPGYTGDPRVYCNKIPPRPPPQEDVPEPVN--PCYP 132
C C+ + P CN G + +
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 133 SPCGPYSQCRDIGGSPS 149
+ C + R +GG+ S
Sbjct: 378 NECTTKIKPRIVGGTAS 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.508
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,231,331
Number of extensions: 942267
Number of successful extensions: 8325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4435
Number of HSP's successfully gapped: 1441
Length of query: 895
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 793
Effective length of database: 3,853,851
Effective search space: 3056103843
Effective search space used: 3056103843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)