BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13147
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BY15|EMR3_HUMAN EGF-like module-containing mucin-like hormone receptor-like 3
OS=Homo sapiens GN=EMR3 PE=2 SV=2
Length = 652
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 71 QKCRDPCQGTCGVNALCTVVHHTPACYCPQG-TIGNPYEHCATPLAPVPPPNPCD---HV 126
QK + C C NA C H C C G T G+ + PL N C V
Sbjct: 22 QKTKTSC-AKCPPNASCVNNTH---CTCNHGYTSGSGQKLFTFPLETCNDINECTPPYSV 77
Query: 127 YCGSNAVCKHTNGIVTCECLPTY 149
YCG NAVC + G C+C+P Y
Sbjct: 78 YCGFNAVCYNVEGSFYCQCVPGY 100
>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain-containing protein
1 OS=Rattus norvegicus GN=Eltd1 PE=1 SV=1
Length = 738
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 71 QKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHV-YCG 129
Q C+ PC NA C V+ AC+C G GN C + C+ CG
Sbjct: 20 QNCKTPCLP----NAKCEVLDEVAACFCSTGYTGNGITIC-------EDVDECNETSVCG 68
Query: 130 SNAVCKHTNGIVTCECLPTY 149
+AVC++TNG +C C+ Y
Sbjct: 69 DHAVCENTNGGFSCFCVEGY 88
>sp|Q80Z19|MUC2_MOUSE Mucin-2 (Fragments) OS=Mus musculus GN=Muc2 PE=1 SV=2
Length = 2680
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 27 SCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMACLGQKCRDPCQGTCG---V 83
CS +E C G W R LC CP NM L + PC TC V
Sbjct: 262 ECSTLAEFSRQCSHAGGRPENW----RTASLCPKKCPNNMVYL--ESSSPCVDTCSHLEV 315
Query: 84 NALCTVVHHTPACYCPQGTI 103
++LC H+ C+CP+GT+
Sbjct: 316 SSLCEE-HYMDGCFCPEGTV 334
>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
Length = 5179
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 28 CSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMACLGQKCRDPCQGTCG---VN 84
CS +E C G W R LC CP N+ L + PC TC V+
Sbjct: 265 CSTVAEFSRQCSHAGGRPGNW----RTATLCPKTCPGNLVYL--ESGSPCMDTCSHLEVS 318
Query: 85 ALCTVVHHTPACYCPQGTI 103
+LC H C+CP+GT+
Sbjct: 319 SLCEE-HRMDGCFCPEGTV 336
>sp|A0A1F4|EYS_DROME Protein eyes shut OS=Drosophila melanogaster GN=eys PE=1 SV=1
Length = 2176
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 128 CGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAACINN 176
C +NA+C G+ TC C+P Y+G EC L C N CI+
Sbjct: 347 CQNNALCLMEEGVPTCYCVPDYHGEKCEFQYDECQLGPRCMNGGVCIDG 395
>sp|P14585|LIN12_CAEEL Protein lin-12 OS=Caenorhabditis elegans GN=lin-12 PE=1 SV=1
Length = 1429
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 75 DPCQGTCGVNALCTVV--HHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNA 132
DPC NA C V H AC C QG G+ E + C C +
Sbjct: 510 DPCMN----NATCIDVDAHIGYACICKQGFEGDICER---------HKDLCLENPCSNGG 556
Query: 133 VCKHTNGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAACINNS 177
VC +C+C P +YGNG + L + C N CIN
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGGVCINEE 601
>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2 PE=1 SV=1
Length = 1513
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 27 SCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMACLGQKCRDPCQGTCG---V 83
CS +E C G W R LC CP NM L + P TC V
Sbjct: 261 ECSTLAEFSRQCSHAGGRPENW----RTASLCPKKCPGNMVYL--ESGSPWLDTCSHLEV 314
Query: 84 NALCTVVHHTPACYCPQGTI 103
++LC H+ C+CP+GT+
Sbjct: 315 SSLCEE-HYMDGCFCPEGTV 333
>sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 OS=Caenorhabditis elegans
GN=mua-3 PE=1 SV=2
Length = 3767
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 42/129 (32%), Gaps = 28/129 (21%)
Query: 72 KCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGN--------------PYEHCATPLAPV 117
+C P C NA C C C G + N P E T L
Sbjct: 966 ECASPSLNDCSKNAFCEDAKEGYICTCRPGYVDNSPNAARHPGRICTKPVEKIKTDLKDT 1025
Query: 118 P--------PPNPCDHVYCGSNAVCKHTNGIVTCECLPT--YYGNGALGCRPECVLNTDC 167
P NP CG+N C +G CEC+ T Y +G+ C C
Sbjct: 1026 SFSTDDGCDPKNP----KCGANEACVQRHGQHNCECVETAFRYTDGSCRVYSACSKRNTC 1081
Query: 168 PNSAACINN 176
+A C+N
Sbjct: 1082 DKNAICLNR 1090
>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain-containing protein 1
OS=Mus musculus GN=Eltd1 PE=2 SV=3
Length = 739
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 78 QGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPC-DHVYCGSNAVCKH 136
+ TC NA C V + AC+C QG GN C + C + CG +AVC++
Sbjct: 24 KTTCLPNAKCEVHNGVEACFCSQGYSGNGVTIC-------EDIDECSESSVCGDHAVCEN 76
Query: 137 TNGIVTCECLPTY 149
NG +C C Y
Sbjct: 77 VNGGFSCFCREGY 89
>sp|P10493|NID1_MOUSE Nidogen-1 OS=Mus musculus GN=Nid1 PE=1 SV=2
Length = 1245
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 121 NPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLNTDC 167
+ C H C +A C +T G TC+C P Y G+G C P V T C
Sbjct: 802 DECQHSRCHPDAFCYNTPGSFTCQCKPGYQGDG-FRCMPGEVSKTRC 847
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus
GN=Notch3 PE=2 SV=2
Length = 2319
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C C H+ C CP+G +G+ HC + +PC C C+ G
Sbjct: 1057 CQAGGQCIDKDHSHYCVCPEGRMGS---HCEQEV------DPCTAQPCQHGGTCRGYMGG 1107
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACIN 175
CEC Y G+ EC + C N +CI+
Sbjct: 1108 YVCECPTGYSGDSCEDDVDECA-SQPCQNGGSCID 1141
>sp|Q14246|EMR1_HUMAN EGF-like module-containing mucin-like hormone receptor-like 1
OS=Homo sapiens GN=EMR1 PE=2 SV=3
Length = 886
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 48 WLPHCRPECLCNSDCPFNMACLGQKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIG-NP 106
W H RP N+ G CRD C A CT + C C QG + N
Sbjct: 18 WEGHIRPTRKPNTK--------GNNCRDST--LCPAYATCTNTVDSYYCACKQGFLSSNG 67
Query: 107 YEHCATPLAPVPPPNPCDHVY--CGSNAVCKHTNGIVTCECLPTY---YGNGALGCRP-- 159
H P + C CG N+ CK+ +G C CL + GN + +P
Sbjct: 68 QNHFKDPGVRCKDIDECSQSPQPCGPNSSCKNLSGRYKCSCLDGFSSPTGNDWVPGKPGN 127
Query: 160 -------ECVLNTDCPNSAACINN 176
EC+ ++ CP + C+N+
Sbjct: 128 FSCTDINECLTSSVCPEHSDCVNS 151
>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2
Length = 1521
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 75 DPCQ-GTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAV 133
D CQ C A CT + C CP+G G E +P +P +PCD+ C + A
Sbjct: 1070 DDCQDNKCKNGAHCTDAVNGYTCVCPEGYSGLFCEF--SPPMVLPRTSPCDNFDCQNGAQ 1127
Query: 134 CKHTNGIVTCECLPTYYG 151
C C+CLP Y G
Sbjct: 1128 CIIRINEPICQCLPGYLG 1145
>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens GN=STAB2 PE=1 SV=3
Length = 2551
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 38/125 (30%)
Query: 36 AMCDPCSGPQAPWLPHCRPECLC-----NSDCPFNMACLGQKCRDPCQGTCGVNALCTVV 90
+ C CS P + P C +CLC N+ + ACL CRD G LC
Sbjct: 773 SQCQFCSDPN-KYGPRCNKKCLCVHGTCNNRIDSDGACLTGTCRDGSAG-----RLCD-- 824
Query: 91 HHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYY 150
T AC PY +C +A C+++NG +C C Y
Sbjct: 825 KQTSAC--------GPYVQ-----------------FCHIHATCEYSNGTASCICKAGYE 859
Query: 151 GNGAL 155
G+G L
Sbjct: 860 GDGTL 864
>sp|Q9HBW9|ELTD1_HUMAN EGF, latrophilin and seven transmembrane domain-containing protein
1 OS=Homo sapiens GN=ELTD1 PE=1 SV=3
Length = 690
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 84 NALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVY--CGSNAVCKHTNGIV 141
NA C + + ACYC G GN C N C ++ CG NA C +T G
Sbjct: 30 NAKCEIRNGIEACYCNMGFSGNGVTIC-------EDDNECGNLTQSCGENANCTNTEGSY 82
Query: 142 TCECLPTY 149
C C+P +
Sbjct: 83 YCMCVPGF 90
>sp|A6QR11|NELL2_BOVIN Protein kinase C-binding protein NELL2 OS=Bos taurus GN=NELL2 PE=2
SV=1
Length = 816
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C N +C + C C G I C V + CD NA+C +T G
Sbjct: 451 CRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECVTNQHNCD-----ENALCFNTVGG 505
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACI 174
C C P Y GNG C+ C C N ACI
Sbjct: 506 HNCVCKPGYTGNGTT-CKAFC--QDGCRNGGACI 536
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 70 GQKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCG 129
G C+ CQ C C + C CPQG G+ C T + V C
Sbjct: 518 GTTCKAFCQDGCRNGGACIAAN---VCACPQGFTGHS---CETDIDECSDG----FVQCD 567
Query: 130 SNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLNTD--------CPNSAACIN 175
S A C + G CEC Y+ NG E + D C N C N
Sbjct: 568 SRANCINLPGWYHCECRDGYHDNGMFSPSGESCEDIDECGTGRHSCANDTICFN 621
>sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=3
Length = 2439
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 15 LACKPNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCN-SDCPFNMACLGQKC 73
+A P P SSC+ SE+ C P W R LC+ CP N + Q+C
Sbjct: 258 VAAAPQPGPQNSSCATLSEYSRQCSMVGQPVRRW----RSPGLCSVGQCPANQ--VYQEC 311
Query: 74 RDPCQGTCGV-----NALCTVVHHTPACYCPQGTIGN 105
C TC ++ CT C+CP+GT+ N
Sbjct: 312 GSACVKTCSNPQHSCSSSCTF-----GCFCPEGTVLN 343
>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1
Length = 1529
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 75 DPCQ-GTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAV 133
D CQ C A CT + C CP+G G E +P +P +PCD+ C + A
Sbjct: 1078 DDCQDNKCKNGAHCTDAVNGYTCICPEGYSGLFCEF--SPPMVLPRTSPCDNFDCQNGAQ 1135
Query: 134 CKHTNGIVTCECLPTYYG 151
C C+CLP Y G
Sbjct: 1136 CIVRINEPICQCLPGYQG 1153
>sp|Q90827|NEL_CHICK Protein NEL OS=Gallus gallus GN=NEL PE=2 SV=1
Length = 816
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 78 QGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHT 137
Q C N +C + C C G I C V + CD NA+C +T
Sbjct: 448 QHYCRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECVTNQHNCD-----ENALCFNT 502
Query: 138 NGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAACINNSI 178
G C C Y GNG + C+ C C N ACI +++
Sbjct: 503 VGGHNCVCKLGYTGNGTV-CKAFC--KDGCRNGGACIASNV 540
>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3
PE=1 SV=2
Length = 2321
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C C + C CP+G G+ HC + +PC C C+ G
Sbjct: 1055 CQAGGQCVDEDSSHYCVCPEGRTGS---HCEQEV------DPCLAQPCQHGGTCRGYMGG 1105
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACIN 175
CECLP Y G+ EC + C + +CI+
Sbjct: 1106 YMCECLPGYNGDNCEDDVDECA-SQPCQHGGSCID 1139
>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus
GN=Notch2 PE=1 SV=1
Length = 2471
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 53 RPECLC--NSDCPF----NMACLGQKCRD--PCQGTCGVNALCTVVHHTPACYCPQGTIG 104
RP CLC D + N++C + P + C + +C +T C CP G G
Sbjct: 1084 RPRCLCPPGWDGAYCDVLNVSCKAAALQKGVPVEHLCQHSGICINAGNTHHCQCPLGYTG 1143
Query: 105 NPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLN 164
+ +C L NPC H A C G CEC+P Y G EC N
Sbjct: 1144 S---YCEEQLDEC-ASNPCQH-----GATCSDFIGGYRCECVPGYQGVNCEYEVDEC-QN 1193
Query: 165 TDCPNSAACIN 175
C N CI+
Sbjct: 1194 QPCQNGGTCID 1204
>sp|Q99435|NELL2_HUMAN Protein kinase C-binding protein NELL2 OS=Homo sapiens GN=NELL2
PE=1 SV=1
Length = 816
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C N +C + C C G I C + + CD NA+C +T G
Sbjct: 451 CRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECITNQHNCD-----ENALCFNTVGG 505
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACI 174
C C P Y GNG C+ C C N ACI
Sbjct: 506 HNCVCKPGYTGNGTT-CKAFC--KDGCRNGGACI 536
>sp|Q5R3Z7|NELL2_PONAB Protein kinase C-binding protein NELL2 OS=Pongo abelii GN=NELL2
PE=2 SV=2
Length = 816
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C N +C + C C G I C + + CD NA+C +T G
Sbjct: 451 CRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDECITNQHNCD-----ENALCFNTVGG 505
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACI 174
C C P Y GNG C+ C C N ACI
Sbjct: 506 HNCVCKPGYTGNGTT-CKAFC--KDGCRNGGACI 536
>sp|A2AVA0|SVEP1_MOUSE Sushi, von Willebrand factor type A, EGF and pentraxin
domain-containing protein 1 OS=Mus musculus GN=Svep1 PE=1
SV=1
Length = 3567
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 84 NALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTC 143
CT + C C +G +G HC T + N C C +NAVCK G +C
Sbjct: 1280 KGTCTDGLASYRCTCVKGYMG---VHCETDV------NECQSSPCLNNAVCKDQVGGFSC 1330
Query: 144 ECLPTYYGNGALGCRPECVLNTDCPNSAACINNS 177
+C P + G EC L+ C N A C + +
Sbjct: 1331 KCPPGFLGTRCEKNVDEC-LSQPCQNGATCKDGA 1363
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 113 PLAPVPPPNPCD----HVYCGSNAVCKHTNGIVTCECLPTYYG--NGALGCRP 159
PL +P NPCD H YC +H + +CLP ++G N GCRP
Sbjct: 462 PLGTIPGGNPCDSETGHCYCKRLVTGQHCD-----QCLPEHWGLSNDLDGCRP 509
>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1
Length = 1523
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 25/101 (24%)
Query: 57 LCNSDCPFNMACLGQKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAP 116
LC +D N C+ KCR Q VN C CPQG G EH
Sbjct: 1070 LCETD---NDDCVAHKCRHGAQCVDAVNGY--------TCICPQGFSGLFCEH------- 1111
Query: 117 VPPP------NPCDHVYCGSNAVCKHTNGIVTCECLPTYYG 151
PPP +PCD C + A C TC C P + G
Sbjct: 1112 -PPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAG 1151
>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2
PE=1 SV=1
Length = 2470
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 53 RPECLC--NSDCPF----NMACLGQKCRD--PCQGTCGVNALCTVVHHTPACYCPQGTIG 104
RP CLC D + N++C + P + C + +C +T C CP G G
Sbjct: 1082 RPHCLCPPGWDGAYCDVLNVSCKAAALQKGVPVEHLCQHSGICINAGNTHHCQCPLGYTG 1141
Query: 105 NPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLN 164
+ +C L NPC H A C G CEC+P Y G EC N
Sbjct: 1142 S---YCEEQLDEC-ASNPCQH-----GATCNDFIGGYRCECVPGYQGVNCEYEVDEC-QN 1191
Query: 165 TDCPNSAACIN 175
C N CI+
Sbjct: 1192 QPCQNGGTCID 1202
>sp|Q61220|NELL2_MOUSE Protein kinase C-binding protein NELL2 OS=Mus musculus GN=Nell2
PE=2 SV=2
Length = 816
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
C N +C + C C G I C + + CD NA+C +T G
Sbjct: 451 CRENTMCVNTPGSFMCVCKTGYIRIDDYSCTEHDECLTTQHNCD-----ENALCFNTVGG 505
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACINNSI 178
C C P Y GNG C+ C C N ACI ++
Sbjct: 506 HNCVCKPGYTGNGTT-CKAFC--KDGCRNGGACIAANV 540
>sp|Q9NYJ7|DLL3_HUMAN Delta-like protein 3 OS=Homo sapiens GN=DLL3 PE=1 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 86 LCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCEC 145
LCTV T +C P+G AT VP P PCD C + C T C C
Sbjct: 247 LCTVPVSTSSCLSPRGP------SSATTGCLVPGPGPCDGNPCANGGSCSETPRSFECTC 300
Query: 146 LPTYYGNGALGCRPECVLNTDCP--NSAACINNS 177
+YG L C V D P N C+ +
Sbjct: 301 PRGFYG---LRCEVSGVTCADGPCFNGGLCVGGA 331
>sp|P0C6B8|SVEP1_RAT Sushi, von Willebrand factor type A, EGF and pentraxin
domain-containing protein 1 OS=Rattus norvegicus GN=Svep1
PE=1 SV=1
Length = 3564
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 84 NALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTC 143
CT + C C G +G HC T + N C C +NAVCK G +C
Sbjct: 1276 KGTCTDGLASYRCTCVSGYVG---VHCETDV------NECQSSPCLNNAVCKDQVGGFSC 1326
Query: 144 ECLPTYYGNGALGCRPECVLNTDCPNSAACINNS 177
+C P + G EC L+ C N A C + +
Sbjct: 1327 KCPPGFLGTRCEKNVDEC-LSQPCQNGATCKDGA 1359
>sp|A1A5Y0|NELL2_DANRE Protein kinase C-binding protein NELL2 OS=Danio rerio GN=nell2 PE=2
SV=1
Length = 811
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 128 CGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAAC 173
C NA+C +T G +C C P Y GNG + CR C + C N +C
Sbjct: 491 CDENALCFNTVGGHSCSCKPGYSGNGTV-CRALC--DGRCLNGGSC 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,582,881
Number of Sequences: 539616
Number of extensions: 3648612
Number of successful extensions: 9613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 413
Number of HSP's that attempted gapping in prelim test: 7452
Number of HSP's gapped (non-prelim): 1972
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)