RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13147
(180 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 35.4 bits (82), Expect = 0.004
Identities = 16/109 (14%), Positives = 24/109 (22%), Gaps = 10/109 (9%)
Query: 70 GQKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCG 129
C D G C ++ + AC G + C + C
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------GKAWGTPCE 90
Query: 130 SNAVCKHTNGIVTCECLPTYYGNGALGCRP---ECVLNTDCPNSAACIN 175
+ + C + N EC CIN
Sbjct: 91 MCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 27.3 bits (61), Expect = 2.2
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 128 CGSNAVCKHTNGIVTCECLPTYYGNGA-LGCRPECVLNTDCPNSAACINN 176
C + + NG C + A C T C A +
Sbjct: 49 CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTS 98
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 32.0 bits (72), Expect = 0.006
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 53 RPECLCNSDCPFNMACLGQKCRDP 76
RPEC+ NSDCP N AC+ QKCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 25.5 bits (55), Expect = 1.4
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 158 RPECVLNTDCPNSAACIN 175
RPECVLN+DCP++ AC+N
Sbjct: 1 RPECVLNSDCPSNQACVN 18
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.0 bits (69), Expect = 0.18
Identities = 22/164 (13%), Positives = 34/164 (20%), Gaps = 6/164 (3%)
Query: 19 PNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMACLGQKCRDPCQ 78
P ++C + + C C C + C C +C C
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHC-QKVCPTICKSHG-CTAEGLCCHSECLGNCS 217
Query: 79 GTCGVNA--LCTVVHHTPACY--CPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVC 134
C + C CP C + C +
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 277
Query: 135 KHTNGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAACINNSI 178
N EC Y N + C+ +I
Sbjct: 278 VIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.5 bits (68), Expect = 0.23
Identities = 13/76 (17%), Positives = 18/76 (23%), Gaps = 4/76 (5%)
Query: 78 QGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHT 137
+ C V+A C C C GN +A P V
Sbjct: 12 RHQCSVHAECRDYATGFCCRCVANYTGN----GRQCVAEGSPQRVNGKVKGRIFVGSSQV 67
Query: 138 NGIVTCECLPTYYGNG 153
+ L +Y
Sbjct: 68 PVVFENTDLHSYVVMN 83
Score = 30.1 bits (67), Expect = 0.35
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 128 CGSNAVCKHTNGIVTCECLPTYYGNGALGCRPECVLNTDCPNSAACINNSI 178
C +A C+ C C+ Y GNG +CV + I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNG-----RQCVAEGSPQRVNGKVKGRI 60
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 30.2 bits (67), Expect = 0.32
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 121 NPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNGALGC--RPECVLNTDCPNSAACIN 175
N C G + VC C C + C EC C S C+N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVN 55
Score = 27.9 bits (61), Expect = 2.3
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 75 DPCQ-GTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAV 133
+ C G + +C + C CP G C + P+ C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-EDIDECQDPDTCSQ-------L 52
Query: 134 CKHTNGIVTCECLPTYYGNG 153
C + G C+C + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDP 72
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 30.2 bits (67), Expect = 0.43
Identities = 11/79 (13%), Positives = 22/79 (27%)
Query: 99 PQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNGALGCR 158
+ + +P + C + VC + C+C T +
Sbjct: 169 SGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQG 228
Query: 159 PECVLNTDCPNSAACINNS 177
E + T + C + S
Sbjct: 229 KEEYIATFKGSEYFCYDLS 247
Score = 27.9 bits (61), Expect = 2.4
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 47 PWLPHCRPECLCNSDCPFNMACLGQKCRDPCQ-GTCGVNALCTVVHHTPACYCPQ-GTIG 104
LP E + + P + + + + G C +C+VV C C + G G
Sbjct: 163 LALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRG 222
Query: 105 NPYEHCATPLAPVPPPN 121
+
Sbjct: 223 KDCSQGKEEYIATFKGS 239
Score = 26.0 bits (56), Expect = 9.7
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 112 TPLAPVPPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYYG 151
P PC C +N +C+ C+C T Y
Sbjct: 611 KPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 650
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 29.6 bits (66), Expect = 0.57
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 118 PPPNPCDHVYCGSNAVCKHTNGIVTCECLPTYYG 151
P C C + VC +C+C T +
Sbjct: 183 GPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFS 216
Score = 27.7 bits (61), Expect = 2.6
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 3/57 (5%)
Query: 73 CRDPCQGT-CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYC 128
CQ C +C +C C + P C P +
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP--LCNDPGTTYIFSKGGGQITY 238
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.5 bits (65), Expect = 0.61
Identities = 26/177 (14%), Positives = 38/177 (21%), Gaps = 18/177 (10%)
Query: 18 KPNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCP-----FNMACLGQK 72
K + + C ++ C P + ++ C C CP G
Sbjct: 149 KDDNEECGDICPGTAKGKTNC-PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 73 CRDPCQGTCGVN------ALCTVVHHTPACY--CPQGTIGNPYEHCATPLAPVPPPNPCD 124
C C G C C + C CP C + C
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCK 267
Query: 125 HVYCGSNAVCKHTNGIVTCECLPTYY----GNGALGCRPECVLNTDCPNSAACINNS 177
+ N EC Y C C I++
Sbjct: 268 NSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 28.6 bits (64), Expect = 0.77
Identities = 25/123 (20%), Positives = 31/123 (25%), Gaps = 31/123 (25%)
Query: 75 DPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPC---------DH 125
C C ++ C + AC C G P C
Sbjct: 3 RGCARWCPQDSSCV---NATACRCNPGFSSF-------SEIITTPMETCDDINECATLSK 52
Query: 126 VYCGSNAVCKHTNGIVTCECLPTYYGNGALGCRP-----------ECVLNTD-CPNSAAC 173
V CG + C +T G C C P Y EC C +S C
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 174 INN 176
N
Sbjct: 113 FNT 115
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 27.4 bits (60), Expect = 2.8
Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 8/80 (10%)
Query: 75 DPCQ-GTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAV 133
+ C G C ++ C C G + C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 134 CKHTNGIVTCECLPTYYGNG 153
C ++ G C C Y
Sbjct: 57 CTNSEGAFQCWCEAGYELRP 76
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 26.8 bits (59), Expect = 5.2
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 101 GTIGNPYEHC-ATPLAPVPPPNPCDHVYCGSNAVC-KHTNGIVTCECLPTYYGNGALGCR 158
G +P A P P+ C +A C +G +C C + GNG L R
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECH-----EHADCVLERDGSRSCVCAVGWAGNGILCGR 60
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 26.1 bits (56), Expect = 6.4
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 119 PPNPCDHVYCGSNAVCKHT-NGIVTCEC 145
P PC + +C VC+ N C C
Sbjct: 2 PLAPCQNHHCKHGKVCELDENNTPMCVC 29
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 26.3 bits (58), Expect = 7.1
Identities = 5/42 (11%), Positives = 6/42 (14%), Gaps = 4/42 (9%)
Query: 91 HHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNA 132
C +PC Y G
Sbjct: 228 ASGSLCVGSDSNRNWDAGFGGAG----ASSSPCAETYHGKYP 265
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 26.2 bits (58), Expect = 7.5
Identities = 10/80 (12%), Positives = 14/80 (17%), Gaps = 3/80 (3%)
Query: 6 LPPYPSNDSLACKPNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPH---CRPECLCNSDC 62
L P S + C G P+ C +
Sbjct: 364 LSLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGR 423
Query: 63 PFNMACLGQKCRDPCQGTCG 82
F +C C
Sbjct: 424 LFQQSCPTGLVFSNSCKCCT 443
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 25.0 bits (54), Expect = 8.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 117 VPPPNPCDHVYCGSNAVC-KHTNGIVTCECLPTYYGNG 153
+ + C NA C ++ +G CL + +
Sbjct: 1 MSSEHRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDA 38
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 25.5 bits (56), Expect = 9.9
Identities = 8/95 (8%), Positives = 19/95 (20%), Gaps = 9/95 (9%)
Query: 81 CGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNPCDHVYCGSNAVCKHTNGI 140
+ C ++ C C +G P CG + + +
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTLADNGK---------ACIPTGPYPCGKQTLERRKRSV 139
Query: 141 VTCECLPTYYGNGALGCRPECVLNTDCPNSAACIN 175
+ + N ++
Sbjct: 140 AQATSSSGEAPDSITWKPYDAADLDPTENPFDLLD 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.517
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,814,160
Number of extensions: 167153
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 347
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)