RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13147
         (180 letters)



>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 26

 Score = 32.0 bits (72), Expect = 0.002
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 53 RPECLCNSDCPFNMACLGQKCRDP 76
          RPEC+ NSDCP N AC+ QKCRDP
Sbjct: 1  RPECVLNSDCPSNQACVNQKCRDP 24



 Score = 25.4 bits (55), Expect = 0.56
 Identities = 13/18 (72%), Positives = 17/18 (94%)

Query: 158 RPECVLNTDCPNSAACIN 175
           RPECVLN+DCP++ AC+N
Sbjct: 1   RPECVLNSDCPSNQACVN 18


>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 25.6 bits (56), Expect = 0.62
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 128 CGSNAVCKHTNGIVTCECLPTYYGNG 153
           C  +A C+       C C+  Y GNG
Sbjct: 9   CSVHAECRDYATGFCCRCVANYTGNG 34


>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable
           domain, VH {Engineered (including hybrid species)}
          Length = 117

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 4/82 (4%)

Query: 27  SCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMA----CLGQKCRDPCQGTCG 82
           SC                Q P         +  SD   +            RD  + T  
Sbjct: 21  SCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLY 80

Query: 83  VNALCTVVHHTPACYCPQGTIG 104
           +         T   YC +G + 
Sbjct: 81  LQMNSLRPEDTAVYYCARGFLP 102


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
            10891]}
          Length = 1264

 Score = 26.5 bits (58), Expect = 2.6
 Identities = 10/37 (27%), Positives = 12/37 (32%)

Query: 34   HVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMACLG 70
               MC+         LP C      NSD    M  +G
Sbjct: 1059 KWRMCEAREPSVDLRLPLCAGIDPLNSDPFLKMVSVG 1095


>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Bacillus subtilis [TaxId: 1423]}
          Length = 334

 Score = 25.8 bits (56), Expect = 3.2
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 1/88 (1%)

Query: 63  PFNMACLGQKCRDPCQGTCGVNALCTVVHHTPACYCPQGTIGNPYEHCATPLAPVPPPNP 122
             +   L  +     +    ++A         A     G I         P  P    + 
Sbjct: 77  KNSSMVLMAQEVAENRADACISA-GNTGALMTAGLFIVGRIKGIDRPALAPTLPTVSGDG 135

Query: 123 CDHVYCGSNAVCKHTNGIVTCECLPTYY 150
              +  G+N   K  + +        Y 
Sbjct: 136 FLLLDVGANVDAKPEHLVQYAIMGSVYS 163


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 23.2 bits (50), Expect = 4.7
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 121 NPCDHVYCGSNAVCKHTNGIVTCECLPTYYGNG 153
           + C       +  C +T+G   CEC   Y   G
Sbjct: 6   DECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38


>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
           10090]}
          Length = 117

 Score = 23.9 bits (51), Expect = 7.3
 Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 6/88 (6%)

Query: 27  SCSVYSEHVAMCDPCSGPQAP-----WLPHCRPECLCNSDCPFNMACLGQKCRDPCQGTC 81
           SC      +         Q       W+ +  P                    D    T 
Sbjct: 20  SCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKA-TLTSDKSSNTA 78

Query: 82  GVNALCTVVHHTPACYCPQGTIGNPYEH 109
            +         +   YC + ++ +P  +
Sbjct: 79  YLELSSLTSEDSAVYYCARSSMSDPGAN 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.517 

Gapped
Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,877
Number of extensions: 40697
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 120
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)