BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13148
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 82 RPECVQNTECPYDKACINEKCRDP 105
RPECV N++CP ++AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 185 RPECIRNSDCANNKACIRNKCKNP 208
RPEC+ NSDC +N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
VN C+ +PC + C D G C C+P Y G +C V EC N +C D
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HCE---VNTDECASSPCLHNGRCLD 99
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIG 133
IN C CP GF G
Sbjct: 100 K-------------INEFQ-CECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
VN C+ +PC + C D G C C+P Y G +C V EC N +C D
Sbjct: 43 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HCE---VNTDECASSPCLHNGRCLD 97
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIG 133
IN C CP GF G
Sbjct: 98 K-------------INEFQ-CECPTGFTG 112
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGA 77
VN CI +PC + C D G C C+P Y G
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGV 34
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 69 SCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQ 112
+CLP Y+ + C + E Y+ CI ++CR P GQ
Sbjct: 33 TCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQ 76
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPN 80
+ C CGP CR + G P C C P+ G P
Sbjct: 2 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPAR 36
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP 105
+ C SPC +C+D G +C+CL + G NC E C D
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN---------- 88
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGF-IGDAFSSCYP 141
G C Q C +S VC C G+ + D +C P
Sbjct: 89 --GDCDQF--CHEEQNSVVCSCARGYTLADNGKACIP 121
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAP 78
+ C CGP CR + G P C C P+ G P
Sbjct: 62 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLP 94
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGFIG 133
CPG C G C N +C CPDGF G
Sbjct: 151 CPGGCRNGGFC---NERRICECPDGFHG 175
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGFIG 133
CPG C G C N +C CPDGF G
Sbjct: 151 CPGGCRNGGFC---NERRICECPDGFHG 175
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 53 CGPYSQCRDINGSPSCSCLPNYIGAP 78
CGP CR + G P C C P+ G P
Sbjct: 78 CGPGKACRMLGGRPRCECAPDCSGLP 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.500
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,355,461
Number of Sequences: 62578
Number of extensions: 366926
Number of successful extensions: 818
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 116
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)