Query psy13148
Match_columns 243
No_of_seqs 289 out of 2020
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 99.6 1.8E-14 3.8E-19 131.5 13.3 189 3-241 705-917 (1289)
2 KOG1214|consensus 99.4 4.5E-13 9.8E-18 122.5 10.5 142 50-235 699-861 (1289)
3 KOG1219|consensus 99.2 1.4E-11 3E-16 121.7 8.0 101 1-134 3873-3974(4289)
4 KOG1219|consensus 99.2 3.6E-11 7.8E-16 118.9 7.8 105 46-182 3865-3977(4289)
5 KOG1225|consensus 99.1 3.6E-10 7.7E-15 101.5 11.0 122 66-234 234-365 (525)
6 KOG4289|consensus 99.0 3.6E-10 7.8E-15 108.5 6.5 91 8-130 1217-1308(2531)
7 KOG1225|consensus 99.0 5.3E-09 1.1E-13 94.1 11.3 118 14-203 235-354 (525)
8 KOG1217|consensus 99.0 1.5E-08 3.2E-13 91.3 14.1 198 3-232 139-388 (487)
9 KOG1217|consensus 98.9 4.1E-08 8.9E-13 88.4 13.1 165 2-202 181-372 (487)
10 KOG4289|consensus 98.8 5.3E-09 1.1E-13 100.8 4.7 107 44-181 1178-1315(2531)
11 KOG4260|consensus 98.2 3.3E-06 7.2E-11 69.1 5.9 82 50-134 149-270 (350)
12 KOG1226|consensus 98.0 7.6E-05 1.6E-09 69.3 11.1 114 67-205 479-607 (783)
13 KOG1226|consensus 98.0 0.00011 2.3E-09 68.4 11.6 137 4-183 467-621 (783)
14 PF07645 EGF_CA: Calcium-bindi 97.9 5.7E-06 1.2E-10 49.2 2.0 34 44-77 1-36 (42)
15 KOG4260|consensus 97.9 8.5E-06 1.8E-10 66.7 2.4 73 39-132 230-304 (350)
16 PF07645 EGF_CA: Calcium-bindi 97.8 1.4E-05 3.1E-10 47.5 2.4 27 107-133 9-35 (42)
17 PF12947 EGF_3: EGF domain; I 97.8 9E-06 2E-10 46.5 1.5 30 108-137 6-35 (36)
18 smart00179 EGF_CA Calcium-bind 97.8 3.7E-05 8.1E-10 44.5 3.9 33 45-77 2-36 (39)
19 PF00008 EGF: EGF-like domain 97.8 1.3E-05 2.8E-10 44.7 1.5 30 48-77 1-31 (32)
20 KOG0994|consensus 97.6 0.00034 7.5E-09 67.5 9.6 73 116-205 878-969 (1758)
21 PF00008 EGF: EGF-like domain 97.5 5.3E-05 1.1E-09 42.2 1.5 27 108-134 4-31 (32)
22 PF12947 EGF_3: EGF domain; I 97.4 7.6E-05 1.7E-09 42.7 1.6 29 51-79 6-34 (36)
23 cd00054 EGF_CA Calcium-binding 97.4 0.00025 5.3E-09 40.5 3.9 33 45-77 2-35 (38)
24 smart00179 EGF_CA Calcium-bind 97.2 0.0006 1.3E-08 39.3 4.0 27 108-134 9-36 (39)
25 PF06247 Plasmod_Pvs28: Plasmo 97.2 8.2E-05 1.8E-09 57.9 -0.1 117 3-134 10-162 (197)
26 smart00181 EGF Epidermal growt 96.7 0.0028 6.2E-08 35.5 3.5 28 48-76 2-30 (35)
27 cd00053 EGF Epidermal growth f 96.7 0.0027 5.9E-08 35.4 3.4 28 50-77 5-32 (36)
28 cd00054 EGF_CA Calcium-binding 96.7 0.0036 7.8E-08 35.4 3.9 26 109-134 10-35 (38)
29 PF12662 cEGF: Complement Clr- 96.3 0.004 8.6E-08 32.0 2.2 24 65-90 1-24 (24)
30 PF12662 cEGF: Complement Clr- 96.2 0.0047 1E-07 31.7 2.2 18 122-140 1-20 (24)
31 KOG0994|consensus 96.2 0.019 4.1E-07 56.1 7.6 60 6-82 878-948 (1758)
32 cd00053 EGF Epidermal growth f 96.0 0.0092 2E-07 33.1 3.2 27 108-134 6-32 (36)
33 smart00181 EGF Epidermal growt 96.0 0.0097 2.1E-07 33.3 3.2 24 109-133 7-30 (35)
34 PF12661 hEGF: Human growth fa 95.9 0.0034 7.3E-08 27.4 0.8 13 169-181 1-13 (13)
35 PF07974 EGF_2: EGF-like domai 95.9 0.009 2E-07 33.1 2.6 24 158-181 7-32 (32)
36 PF07974 EGF_2: EGF-like domai 95.0 0.03 6.4E-07 31.0 2.7 21 2-24 10-30 (32)
37 PF14670 FXa_inhibition: Coagu 94.4 0.034 7.3E-07 31.6 1.9 21 5-25 11-31 (36)
38 PF06247 Plasmod_Pvs28: Plasmo 93.9 0.0078 1.7E-07 47.1 -1.8 94 57-177 11-119 (197)
39 PF14670 FXa_inhibition: Coagu 93.2 0.06 1.3E-06 30.6 1.6 20 58-77 11-30 (36)
40 smart00051 DSL delta serrate l 92.3 0.19 4.2E-06 32.4 3.3 42 123-181 17-63 (63)
41 PF12946 EGF_MSP1_1: MSP1 EGF 91.8 0.051 1.1E-06 30.9 0.1 31 48-78 2-33 (37)
42 smart00051 DSL delta serrate l 88.8 0.67 1.5E-05 29.9 3.4 45 66-134 17-61 (63)
43 cd01475 vWA_Matrilin VWA_Matri 88.7 0.47 1E-05 38.7 3.3 34 42-77 184-219 (224)
44 cd01475 vWA_Matrilin VWA_Matri 84.4 1.1 2.4E-05 36.5 3.3 26 107-134 194-219 (224)
45 PF01683 EB: EB module; Inter 83.6 1.8 3.9E-05 26.4 3.3 21 158-178 27-47 (52)
46 KOG1836|consensus 83.6 2.9 6.3E-05 43.9 6.5 51 124-185 757-815 (1705)
47 KOG1218|consensus 82.7 23 0.00051 29.9 11.1 37 167-203 161-197 (316)
48 PF01683 EB: EB module; Inter 78.9 5.7 0.00012 24.1 4.4 22 109-134 27-48 (52)
49 KOG1836|consensus 78.7 15 0.00032 39.0 9.5 53 13-82 756-812 (1705)
50 KOG3512|consensus 75.8 23 0.00049 32.2 8.6 52 5-56 286-339 (592)
51 PHA03099 epidermal growth fact 72.3 3.7 8.1E-05 30.3 2.5 25 3-30 55-81 (139)
52 PHA02887 EGF-like protein; Pro 72.3 3.2 7E-05 30.1 2.2 24 158-182 93-122 (126)
53 cd00055 EGF_Lam Laminin-type e 71.5 5.1 0.00011 24.2 2.7 14 169-182 20-33 (50)
54 PHA03099 epidermal growth fact 69.4 5.9 0.00013 29.2 3.0 36 44-82 41-81 (139)
55 PF00954 S_locus_glycop: S-loc 69.0 5.7 0.00012 28.4 3.0 32 45-77 77-109 (110)
56 KOG1218|consensus 68.2 73 0.0016 26.9 11.6 40 124-177 163-208 (316)
57 PF00053 Laminin_EGF: Laminin 66.1 4.2 9.2E-05 24.4 1.5 20 164-183 12-33 (49)
58 PF00954 S_locus_glycop: S-loc 65.6 7.1 0.00015 27.9 2.9 26 108-134 84-109 (110)
59 PHA02887 EGF-like protein; Pro 63.7 8.1 0.00018 28.0 2.7 32 45-77 83-119 (126)
60 PF01414 DSL: Delta serrate li 50.4 6.5 0.00014 25.3 0.5 42 123-181 17-63 (63)
61 smart00180 EGF_Lam Laminin-typ 46.7 30 0.00066 20.4 3.0 20 5-29 12-31 (46)
62 PF09064 Tme5_EGF_like: Thromb 46.5 16 0.00034 20.4 1.5 14 12-25 17-30 (34)
63 KOG3516|consensus 42.2 22 0.00048 35.9 2.8 38 43-82 543-581 (1306)
64 KOG3607|consensus 36.0 39 0.00085 32.7 3.4 46 89-140 604-656 (716)
65 KOG3514|consensus 31.7 35 0.00077 34.3 2.3 34 47-82 625-659 (1591)
66 KOG3607|consensus 28.6 55 0.0012 31.7 3.1 44 190-234 602-654 (716)
67 KOG3516|consensus 28.4 42 0.00092 34.1 2.3 35 104-141 546-582 (1306)
68 KOG0196|consensus 23.3 1.5E+02 0.0032 29.3 4.8 65 110-179 248-319 (996)
No 1
>KOG1214|consensus
Probab=99.59 E-value=1.8e-14 Score=131.49 Aligned_cols=189 Identities=26% Similarity=0.601 Sum_probs=127.9
Q ss_pred CCeeeecC-CCceeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCC--CCCCCCCeeeeCCCCCeeecCCCcc--cC
Q psy13148 3 AKLLRVIN-HNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIP--SPCGPYSQCRDINGSPSCSCLPNYI--GA 77 (243)
Q Consensus 3 ~~~C~~~~-~~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~--g~ 77 (243)
++.|+... -.|+|.|..||.|++.. | .|+++|+. +.|+++++|++.+++|+|.|..||. ++
T Consensus 705 ~a~C~pg~~~~~tcecs~g~~gdgr~-c-------------~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd 770 (1289)
T KOG1214|consen 705 TARCHPGTGVDYTCECSSGYQGDGRN-C-------------VDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADD 770 (1289)
T ss_pred CccccCCCCcceEEEEeeccCCCCCC-C-------------CChhhhccCCCCCCCCceeecCCCceeEEEeecceeccC
Confidence 45677654 37899999999999874 5 78889985 5699999999999999999998875 44
Q ss_pred CCCCccCCC--CCCCCCCCCcccCCcccCCCCCCCCCCC--eeeeCC-CCceeeCCCCCccCCCCCCccCCCCCCCCCCC
Q psy13148 78 PPNCRPECV--QNTECPYDKACINEKCRDPCPGSCGQGA--QCRVIN-HSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQ 152 (243)
Q Consensus 78 ~~~c~~~C~--~~~~C~~~~~C~~~~C~~~C~~~C~~~~--~C~~~~-g~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~ 152 (243)
+.+|...-. .++.|... .+.|...+ .|+... +.|.|.|.|||.|++.. |.
T Consensus 771 ~~tCV~i~~pap~n~Ce~g------------~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~-c~------------ 825 (1289)
T KOG1214|consen 771 RHTCVLITPPAPANPCEDG------------SHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQ-CT------------ 825 (1289)
T ss_pred CcceEEecCCCCCCccccC------------ccccCcCCceEEEecCCceEEEeecCCccCCccc-cc------------
Confidence 443332100 12233222 34565444 455544 44999999999999987 87
Q ss_pred CCcCC---CCCCCCeeeCC----ceecCCCcccCCCccCCCCCCCCCCCCCCCcccCCCccCCCCCCCCCCCC---eeec
Q psy13148 153 QADPC---ICAPNAVCRDN----VCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCGEGA---SSWT 222 (243)
Q Consensus 153 ~~~~C---~C~~~~~C~~~----~C~C~~G~~G~~c~~~~~~C~~~~~C~~~~~C~~~~C~~~C~~~~C~~~~---~C~~ 222 (243)
++|+| .|+..++|+++ .|+|.+||.||+.+ +++.=....+|... .=-+-.|+.++ .|++
T Consensus 826 dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~-CVP~~~~~T~C~~e----------r~hpl~chg~t~~~~~~D 894 (1289)
T KOG1214|consen 826 DVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQ-CVPDTSSLTPCEQE----------RFHPLQCHGSTGFCWCVD 894 (1289)
T ss_pred cccccCccccCCCceEecCCCcceeecccCccCCCce-ecCCCccCCccccc----------cccceeeccccceeEeeC
Confidence 78999 79999999987 89999999999987 55442222234321 00022344444 2334
Q ss_pred CC---ccc-CcccCCCceeeecc
Q psy13148 223 TG---CTA-EKKRNDTIYSLARL 241 (243)
Q Consensus 223 ~~---C~c-~g~~g~~~~~c~~~ 241 (243)
.. +.+ ++..|++.-+|..+
T Consensus 895 p~~~e~p~~~~ppG~~~~~c~~~ 917 (1289)
T KOG1214|consen 895 PDGHEVPGTQTPPGSTPPHCGPS 917 (1289)
T ss_pred CCcccCCCCCCCCCCCCCCCCCc
Confidence 42 666 67777777666544
No 2
>KOG1214|consensus
Probab=99.45 E-value=4.5e-13 Score=122.47 Aligned_cols=142 Identities=27% Similarity=0.643 Sum_probs=107.6
Q ss_pred CCCCCCCCeeeeCCC-CCeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCC
Q psy13148 50 PSPCGPYSQCRDING-SPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCP 128 (243)
Q Consensus 50 ~~~C~~~~~C~~~~g-~~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~ 128 (243)
++-|..++.|...++ .|+|.|..||.|.+. .|.+.++|+.. .+.|+++++|++.+++|+|.|.
T Consensus 699 sh~cdt~a~C~pg~~~~~tcecs~g~~gdgr----~c~d~~eca~~------------~~~CGp~s~Cin~pg~~rceC~ 762 (1289)
T KOG1214|consen 699 SHMCDTTARCHPGTGVDYTCECSSGYQGDGR----NCVDENECATG------------FHRCGPNSVCINLPGSYRCECR 762 (1289)
T ss_pred CcccCCCccccCCCCcceEEEEeeccCCCCC----CCCChhhhccC------------CCCCCCCceeecCCCceeEEEe
Confidence 445777888886654 689999999999987 77788888876 6789999999999999999999
Q ss_pred CCC--ccCCCCCCccCCCCCCCCCCCCCcCC-----CCCCCCee--eCC-----ceecCCCcccCCCc-cCCCCCCCCCC
Q psy13148 129 DGF--IGDAFSSCYPKPIEPIQAPEQQADPC-----ICAPNAVC--RDN-----VCVCLPDYYGDGYT-VCRPECIRNSD 193 (243)
Q Consensus 129 ~G~--~g~~~~~C~~~~~~~~~~~~~~~~~C-----~C~~~~~C--~~~-----~C~C~~G~~G~~c~-~~~~~C~~~~~ 193 (243)
.|| .+++.. |.+...+ ..++.| .|+..+.+ +.. .|.|.|||.||+.. .++
T Consensus 763 ~gy~F~dd~~t-CV~i~~p------ap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dv-------- 827 (1289)
T KOG1214|consen 763 SGYEFADDRHT-CVLITPP------APANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDV-------- 827 (1289)
T ss_pred ecceeccCCcc-eEEecCC------CCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccc--------
Confidence 887 444443 7643221 134555 56555444 322 89999999999875 333
Q ss_pred CCCCCcccCCCccCCCCCCCCCCCCeeecCC----ccc-CcccCCCc
Q psy13148 194 CANNKACIRNKCKNPCVPGTCGEGASSWTTG----CTA-EKKRNDTI 235 (243)
Q Consensus 194 C~~~~~C~~~~C~~~C~~~~C~~~~~C~~~~----C~c-~g~~g~~~ 235 (243)
|+|.++.|+++|.|+++. |.| +||.|||+
T Consensus 828 -------------DeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf 861 (1289)
T KOG1214|consen 828 -------------DECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGF 861 (1289)
T ss_pred -------------cccCccccCCCceEecCCCcceeecccCccCCCc
Confidence 444467899999999887 999 99999986
No 3
>KOG1219|consensus
Probab=99.25 E-value=1.4e-11 Score=121.67 Aligned_cols=101 Identities=27% Similarity=0.645 Sum_probs=90.4
Q ss_pred CCCCeeeecC-CCceeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeCCCCCeeecCCCcccCCC
Q psy13148 1 MFAKLLRVIN-HNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPP 79 (243)
Q Consensus 1 ~~~~~C~~~~-~~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~ 79 (243)
+++|+|+..+ ++|.|.|++-|+|. +| +.++..|.++||..+++|+...+.|.|.|+.||+|.
T Consensus 3873 qhgG~C~~~~~ggy~CkCpsqysG~---~C------------Ei~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~-- 3935 (4289)
T KOG1219|consen 3873 QHGGTCISQPKGGYKCKCPSQYSGN---HC------------EIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGK-- 3935 (4289)
T ss_pred cCCCEecCCCCCceEEeCcccccCc---cc------------ccccccccCCCCCCCCEEEecCCCeeEeCCCCccCc--
Confidence 4688999875 78999999999999 88 588999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 80 NCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 80 ~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
+|+.. .+++|..+ +|..++.|++..|+|.|.|-+||.|.
T Consensus 3936 ~Ce~~--Gi~eCs~n--------------~C~~gg~C~n~~gsf~CncT~g~~gr 3974 (4289)
T KOG1219|consen 3936 RCEAR--GISECSKN--------------VCGTGGQCINIPGSFHCNCTPGILGR 3974 (4289)
T ss_pred eeecc--cccccccc--------------cccCCceeeccCCceEeccChhHhcc
Confidence 66642 36777754 89999999999999999999999988
No 4
>KOG1219|consensus
Probab=99.20 E-value=3.6e-11 Score=118.88 Aligned_cols=105 Identities=27% Similarity=0.759 Sum_probs=91.4
Q ss_pred CCCCCCCCCCCCeeeeCC-CCCeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCce
Q psy13148 46 NPCIPSPCGPYSQCRDIN-GSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPV 124 (243)
Q Consensus 46 ~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~ 124 (243)
+.|.++||.++|+|...+ +.|.|.|++.|+|+ .|+. ++..|.. +||..+++|+...++|.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~--~CEi---~~epC~s--------------nPC~~GgtCip~~n~f~ 3925 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGN--HCEI---DLEPCAS--------------NPCLTGGTCIPFYNGFL 3925 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCc--cccc---ccccccC--------------CCCCCCCEEEecCCCee
Confidence 789999999999999876 67999999999999 6653 3456664 48999999999999999
Q ss_pred eeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC---CCCCCCeeeCC----ceecCCCcccCCCc
Q psy13148 125 CYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC---ICAPNAVCRDN----VCVCLPDYYGDGYT 182 (243)
Q Consensus 125 C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C---~C~~~~~C~~~----~C~C~~G~~G~~c~ 182 (243)
|.|+.||+|+ .|+.. .+++| +|.++|.|++. .|.|.+||.|..|.
T Consensus 3926 CnC~~gyTG~---~Ce~~----------Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3926 CNCPNGYTGK---RCEAR----------GISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred EeCCCCccCc---eeecc----------cccccccccccCCceeeccCCceEeccChhHhcccCc
Confidence 9999999999 89841 37899 89999999987 89999999999874
No 5
>KOG1225|consensus
Probab=99.14 E-value=3.6e-10 Score=101.55 Aligned_cols=122 Identities=33% Similarity=0.840 Sum_probs=94.4
Q ss_pred CeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCccCCCC
Q psy13148 66 PSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIE 145 (243)
Q Consensus 66 ~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~ 145 (243)
..|.|..+|+|. .|+ ...| ++.|..++.|+.. +|+|++||+|+ .|.
T Consensus 234 ~ic~c~~~~~g~------~c~-~~~C---------------~~~c~~~g~c~~G----~CIC~~Gf~G~---dC~----- 279 (525)
T KOG1225|consen 234 GICECPEGYFGP------LCS-TIYC---------------PGGCTGRGQCVEG----RCICPPGFTGD---DCD----- 279 (525)
T ss_pred ceeecCCceeCC------ccc-cccC---------------CCCCcccceEeCC----eEeCCCCCcCC---CCC-----
Confidence 368888888887 443 2223 3346666778765 69999999999 787
Q ss_pred CCCCCCCCCcCC--CCCCCCeeeCCceecCCCcccCCCccCCCCCCCCCCCCCCCcccCCCcc-------CCCCCCCCCC
Q psy13148 146 PIQAPEQQADPC--ICAPNAVCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCK-------NPCVPGTCGE 216 (243)
Q Consensus 146 ~~~~~~~~~~~C--~C~~~~~C~~~~C~C~~G~~G~~c~~~~~~C~~~~~C~~~~~C~~~~C~-------~~C~~~~C~~ 216 (243)
+..| .|..++.+++..|+|++||+|..|+ +..| ..+|.++|.|++++|. ..|....|.+
T Consensus 280 --------e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs--~~~c--padC~g~G~Ci~G~C~C~~Gy~G~~C~~~~C~~ 347 (525)
T KOG1225|consen 280 --------ELVCPVDCSGGGVCVDGECICNPGYSGKDCS--IRRC--PADCSGHGKCIDGECLCDEGYTGELCIQRACSG 347 (525)
T ss_pred --------cccCCcccCCCceecCCEeecCCCccccccc--cccC--CccCCCCCcccCCceEeCCCCcCCcccccccCC
Confidence 2456 6778888998899999999999986 4446 4689999999988883 4675445999
Q ss_pred CCeeecCCccc-CcccCCC
Q psy13148 217 GASSWTTGCTA-EKKRNDT 234 (243)
Q Consensus 217 ~~~C~~~~C~c-~g~~g~~ 234 (243)
++.|++. |.| +||+|.-
T Consensus 348 ~g~cv~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 348 GGQCVNG-CKCKKGWRGPD 365 (525)
T ss_pred CceeccC-ceeccCccCCC
Confidence 9999999 999 9999876
No 6
>KOG4289|consensus
Probab=99.03 E-value=3.6e-10 Score=108.46 Aligned_cols=91 Identities=33% Similarity=0.881 Sum_probs=75.0
Q ss_pred ecCCCceeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeCCCCCeeecCCCcccCCCCCccCCCC
Q psy13148 8 VINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQ 87 (243)
Q Consensus 8 ~~~~~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~c~~~C~~ 87 (243)
+..+.+.|.|++||+|+ .| ++++|.|.+.||++++.|....|.|+|.|.+||+|. .|+..-.
T Consensus 1217 ~pvnglrCrCPpGFTgd---~C------------eTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe--hCEvs~~- 1278 (2531)
T KOG4289|consen 1217 HPVNGLRCRCPPGFTGD---YC------------ETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE--HCEVSAR- 1278 (2531)
T ss_pred cccCceeEeCCCCCCcc---cc------------cchhHhhhcCCCCCCCceEEecCceeEEecCCcccc--ceeeecc-
Confidence 34577999999999999 88 689999999999999999999999999999999999 6653211
Q ss_pred CCCCCCCCcccCCcccCCCCCCCCCCCeeeeCC-CCceeeCCCC
Q psy13148 88 NTECPYDKACINEKCRDPCPGSCGQGAQCRVIN-HSPVCYCPDG 130 (243)
Q Consensus 88 ~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~-g~~~C~C~~G 130 (243)
...|. +..|.++++|++.. ++|.|.|+.|
T Consensus 1279 agrCv--------------pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1279 AGRCV--------------PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred cCccc--------------cceecCCCEEeecCCCceeccCCCc
Confidence 12222 44789999999864 6799999988
No 7
>KOG1225|consensus
Probab=98.97 E-value=5.3e-09 Score=94.11 Aligned_cols=118 Identities=31% Similarity=0.839 Sum_probs=73.5
Q ss_pred eeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeCCCCCeeecCCCcccCCCCCccCCCCCCCCCC
Q psy13148 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPY 93 (243)
Q Consensus 14 ~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~c~~~C~~~~~C~~ 93 (243)
+|.|..+|+|. .|. .-.| +..|...+.|++ .+|.|++||+|. .|. . ..|.
T Consensus 235 ic~c~~~~~g~---~c~--------------~~~C-~~~c~~~g~c~~----G~CIC~~Gf~G~--dC~----e-~~Cp- 284 (525)
T KOG1225|consen 235 ICECPEGYFGP---LCS--------------TIYC-PGGCTGRGQCVE----GRCICPPGFTGD--DCD----E-LVCP- 284 (525)
T ss_pred eeecCCceeCC---ccc--------------cccC-CCCCcccceEeC----CeEeCCCCCcCC--CCC----c-ccCC-
Confidence 68888888888 551 1122 334555567774 589999999998 443 2 1222
Q ss_pred CCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC--CCCCCCeeeCCcee
Q psy13148 94 DKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC--ICAPNAVCRDNVCV 171 (243)
Q Consensus 94 ~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C--~C~~~~~C~~~~C~ 171 (243)
..|+.++.+++. .|.|++||+|. .|+ +.+| .|..++.|+..+|.
T Consensus 285 --------------~~cs~~g~~~~g----~CiC~~g~~G~---dCs-------------~~~cpadC~g~G~Ci~G~C~ 330 (525)
T KOG1225|consen 285 --------------VDCSGGGVCVDG----ECICNPGYSGK---DCS-------------IRRCPADCSGHGKCIDGECL 330 (525)
T ss_pred --------------cccCCCceecCC----EeecCCCcccc---ccc-------------cccCCccCCCCCcccCCceE
Confidence 235555555443 47777777777 665 3445 67777777766777
Q ss_pred cCCCcccCCCccCCCCCCCCCCCCCCCcccCC
Q psy13148 172 CLPDYYGDGYTVCRPECIRNSDCANNKACIRN 203 (243)
Q Consensus 172 C~~G~~G~~c~~~~~~C~~~~~C~~~~~C~~~ 203 (243)
|.+||+|..|... .|.+++.|++.
T Consensus 331 C~~Gy~G~~C~~~--------~C~~~g~cv~g 354 (525)
T KOG1225|consen 331 CDEGYTGELCIQR--------ACSGGGQCVNG 354 (525)
T ss_pred eCCCCcCCccccc--------ccCCCceeccC
Confidence 7777777766511 26666666666
No 8
>KOG1217|consensus
Probab=98.96 E-value=1.5e-08 Score=91.30 Aligned_cols=198 Identities=29% Similarity=0.685 Sum_probs=128.1
Q ss_pred CCeeeec---CCCceeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCC--CCCCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 3 AKLLRVI---NHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI--PSPCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 3 ~~~C~~~---~~~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
.+.|... ...|.|.|..||.+. .+ ....++|. ..+|.+++.|.+..++|.|.|+++|.+.
T Consensus 139 ~~~c~~~~~~~~~~~c~C~~g~~~~---~~------------~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~ 203 (487)
T KOG1217|consen 139 DGSCSNGPGSVGPFRCSCTEGYEGE---PC------------ETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGS 203 (487)
T ss_pred chhhcCCCCCCCceeeeeCCCcccc---cc------------cccccccccCCCCcCCCcccccCCCCeeEeCCCCccCC
Confidence 3455553 358899999999999 54 12336887 3469999999999999999999999998
Q ss_pred CCCCccCCCCCCCCCCCCccc------CCcccCCCCCCCCCC-CeeeeCCCCceeeCCCCCccCC-CCCCccCCCCCCCC
Q psy13148 78 PPNCRPECVQNTECPYDKACI------NEKCRDPCPGSCGQG-AQCRVINHSPVCYCPDGFIGDA-FSSCYPKPIEPIQA 149 (243)
Q Consensus 78 ~~~c~~~C~~~~~C~~~~~C~------~~~C~~~C~~~C~~~-~~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~~~~~~ 149 (243)
.++.. .....|.....|. ...|... ...+... ++|.+..++|+|.+++||++.. .. +.
T Consensus 204 --~~~~~-~~~~~c~~~~~~~~~~g~~~~~c~~~-~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~-~~--------- 269 (487)
T KOG1217|consen 204 --TCETT-GNGGTCVDSVACSCPPGARGPECEVS-IVECASGDGTCVNTVGSYTCRCPEGYTGDACVT-CV--------- 269 (487)
T ss_pred --cCcCC-CCCceEecceeccCCCCCCCCCcccc-cccccCCCCcccccCCceeeeCCCCccccccce-ee---------
Confidence 44321 0001111000000 0011000 1123322 7899988999999999999984 22 34
Q ss_pred CCCCCcCC---C-CCCCCeeeCC----ceecCCCcccCCC-c-cCCCCCC---CCCCCCCCCcccC-C------------
Q psy13148 150 PEQQADPC---I-CAPNAVCRDN----VCVCLPDYYGDGY-T-VCRPECI---RNSDCANNKACIR-N------------ 203 (243)
Q Consensus 150 ~~~~~~~C---~-C~~~~~C~~~----~C~C~~G~~G~~c-~-~~~~~C~---~~~~C~~~~~C~~-~------------ 203 (243)
+++.| . |.++++|++. .|.|++||.|..+ . .+..+|. ....|.++++|.. .
T Consensus 270 ---~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~ 346 (487)
T KOG1217|consen 270 ---DVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPG 346 (487)
T ss_pred ---eccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCC
Confidence 56777 3 7888999865 7999999999997 2 2345674 3445777777711 1
Q ss_pred ----Ccc---CCCCCCCCCCCCeeec-CC----ccc-CcccC
Q psy13148 204 ----KCK---NPCVPGTCGEGASSWT-TG----CTA-EKKRN 232 (243)
Q Consensus 204 ----~C~---~~C~~~~C~~~~~C~~-~~----C~c-~g~~g 232 (243)
+|. ++|...++..++.|.+ .. |.+ .++.+
T Consensus 347 ~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~ 388 (487)
T KOG1217|consen 347 FTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAG 388 (487)
T ss_pred CCCCccccCCccccCCccccCCEeccCCCCCeEecCCCcccc
Confidence 232 2677777888999987 32 888 76665
No 9
>KOG1217|consensus
Probab=98.86 E-value=4.1e-08 Score=88.41 Aligned_cols=165 Identities=27% Similarity=0.650 Sum_probs=110.5
Q ss_pred CCCeeeecCCCceeecCCCCccCCCCCCcCC--------------CCCCCCCCCCCCCCCCCCCCCCCCCeeeeCCCCCe
Q psy13148 2 FAKLLRVINHNPSCTCKAGFTGDPRVFCSRI--------------PPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPS 67 (243)
Q Consensus 2 ~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~--------------~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~g~~~ 67 (243)
+++.|.+..++|.|.|.+||.+. .|... ...........++.++... . +.|++..+++.
T Consensus 181 ~~~~C~~~~~~~~C~c~~~~~~~---~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~---~-~~c~~~~~~~~ 253 (487)
T KOG1217|consen 181 NGGTCVNTGGSYLCSCPPGYTGS---TCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASG---D-GTCVNTVGSYT 253 (487)
T ss_pred CCcccccCCCCeeEeCCCCccCC---cCcCCCCCceEecceeccCCCCCCCCCcccccccccCC---C-CcccccCCcee
Confidence 56789999999999999999988 44211 0000011112222222222 3 88999999999
Q ss_pred eecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCccCCCCCC
Q psy13148 68 CSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPI 147 (243)
Q Consensus 68 C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~~ 147 (243)
|.+++||.+.. + ..+.++++|... .. |.++++|++..+.|.|.|++||+|. .+.. .
T Consensus 254 C~~~~g~~~~~--~-~~~~~~~~C~~~------------~~-c~~~~~C~~~~~~~~C~C~~g~~g~---~~~~--~--- 309 (487)
T KOG1217|consen 254 CRCPEGYTGDA--C-VTCVDVDSCALI------------AS-CPNGGTCVNVPGSYRCTCPPGFTGR---LCTE--C--- 309 (487)
T ss_pred eeCCCCccccc--c-ceeeeccccCCC------------Cc-cCCCCeeecCCCcceeeCCCCCCCC---CCcc--c---
Confidence 99999999983 1 134456666654 22 7778899999888999999999998 4410 0
Q ss_pred CCCCCCCcCC-------CCCCCCeeeC--C----ceecCCCcccCCCccCCCCCCCCCCCCCCCcccC
Q psy13148 148 QAPEQQADPC-------ICAPNAVCRD--N----VCVCLPDYYGDGYTVCRPECIRNSDCANNKACIR 202 (243)
Q Consensus 148 ~~~~~~~~~C-------~C~~~~~C~~--~----~C~C~~G~~G~~c~~~~~~C~~~~~C~~~~~C~~ 202 (243)
.+..+| .|.+++.|.. . .|.|..||.|..|+...++|.. ..+..++.|++
T Consensus 310 ----~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~-~~~~~~~~c~~ 372 (487)
T KOG1217|consen 310 ----VDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECAS-SPCCPGGTCVN 372 (487)
T ss_pred ----cccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccC-CccccCCEecc
Confidence 023444 4777767722 1 6999999999999833357863 45778888886
No 10
>KOG4289|consensus
Probab=98.78 E-value=5.3e-09 Score=100.76 Aligned_cols=107 Identities=26% Similarity=0.696 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCCCeeee----------------------CCCCCeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCc
Q psy13148 44 YVNPCIPSPCGPYSQCRD----------------------INGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEK 101 (243)
Q Consensus 44 ~~~~C~~~~C~~~~~C~~----------------------~~g~~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~ 101 (243)
+-+.|...||.+...|+. ..+.+.|.|++||+|+ .|+. .+++|.++
T Consensus 1178 dDniClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd--~CeT---eiDlCYs~------- 1245 (2531)
T KOG4289|consen 1178 DDNICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGD--YCET---EIDLCYSG------- 1245 (2531)
T ss_pred cCchhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcc--cccc---hhHhhhcC-------
Confidence 445677778877766642 2456899999999999 6764 46777765
Q ss_pred ccCCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC---CCCCCCeeeCC-----ceecC
Q psy13148 102 CRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC---ICAPNAVCRDN-----VCVCL 173 (243)
Q Consensus 102 C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C---~C~~~~~C~~~-----~C~C~ 173 (243)
+|++++.|....|+|+|.|.+||+|. +|+... ....| .|.++++|++. .|+|+
T Consensus 1246 -------pC~nng~C~srEggYtCeCrpg~tGe---hCEvs~---------~agrCvpGvC~nggtC~~~~nggf~c~Cp 1306 (2531)
T KOG4289|consen 1246 -------PCGNNGRCRSREGGYTCECRPGFTGE---HCEVSA---------RAGRCVPGVCKNGGTCVNLLNGGFCCHCP 1306 (2531)
T ss_pred -------CCCCCCceEEecCceeEEecCCcccc---ceeeec---------ccCccccceecCCCEEeecCCCceeccCC
Confidence 89999999999999999999999999 887321 12356 79999999875 78998
Q ss_pred CC-cccCCC
Q psy13148 174 PD-YYGDGY 181 (243)
Q Consensus 174 ~G-~~G~~c 181 (243)
.| |.+.+|
T Consensus 1307 ~ge~e~prC 1315 (2531)
T KOG4289|consen 1307 YGEFEDPRC 1315 (2531)
T ss_pred CcccCCCce
Confidence 77 334443
No 11
>KOG4260|consensus
Probab=98.19 E-value=3.3e-06 Score=69.07 Aligned_cols=82 Identities=29% Similarity=0.643 Sum_probs=54.3
Q ss_pred CCCCCCCCeee---eCCCCCeeecCCCcccCCCCCccCCC----------------CC-----CCCCC--CC---ccc--
Q psy13148 50 PSPCGPYSQCR---DINGSPSCSCLPNYIGAPPNCRPECV----------------QN-----TECPY--DK---ACI-- 98 (243)
Q Consensus 50 ~~~C~~~~~C~---~~~g~~~C~C~~G~~g~~~~c~~~C~----------------~~-----~~C~~--~~---~C~-- 98 (243)
..||+.++.|. .+.|+..|.|.+||+|. .|. .|. .- ..|+. .. .|.
T Consensus 149 er~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp--~C~-~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkG 225 (350)
T KOG4260|consen 149 ERPCFGNGSCHGDGSREGSGKCKCETGYTGP--LCR-YCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKG 225 (350)
T ss_pred cCCcCCCCcccCCCCCCCCCcccccCCCCCc--ccc-ccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhccc
Confidence 45799999997 34578899999999998 553 110 00 01111 00 111
Q ss_pred ----CCccc--CCC---CCCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 99 ----NEKCR--DPC---PGSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 99 ----~~~C~--~~C---~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
+..|+ +.| +.+|.....|+|+.|+|.|...+||.+.
T Consensus 226 W~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 226 WKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG 270 (350)
T ss_pred ceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCC
Confidence 12444 345 5678888899999999999999999773
No 12
>KOG1226|consensus
Probab=97.98 E-value=7.6e-05 Score=69.30 Aligned_cols=114 Identities=23% Similarity=0.638 Sum_probs=72.8
Q ss_pred eeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCC-CCCCCCCCeeeeCCCCceeeCCCCCc----cCCCCCCcc
Q psy13148 67 SCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPC-PGSCGQGAQCRVINHSPVCYCPDGFI----GDAFSSCYP 141 (243)
Q Consensus 67 ~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C-~~~C~~~~~C~~~~g~~~C~C~~G~~----g~~~~~C~~ 141 (243)
.|.|.+||.|. .|+ |... ...... ...+|...= ..+|..++.|.=. +|.|.+... |. .|+-
T Consensus 479 ~C~C~~G~~G~--~CE--C~~~--~~ss~~-~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~---fCEC 544 (783)
T KOG1226|consen 479 QCRCDEGWLGK--KCE--CSTD--ELSSSE-EEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGK---FCEC 544 (783)
T ss_pred ceecCCCCCCC--ccc--CCcc--ccCcHh-HHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeee---eeec
Confidence 67999999999 554 1110 000000 011111110 1267777777654 488887765 55 5652
Q ss_pred CCCCCCCCCCCCCcCC------CCCCCCeeeCCceecCCCcccCCCc--cCCCCCCCCC--CCCCCCcccCCCc
Q psy13148 142 KPIEPIQAPEQQADPC------ICAPNAVCRDNVCVCLPDYYGDGYT--VCRPECIRNS--DCANNKACIRNKC 205 (243)
Q Consensus 142 ~~~~~~~~~~~~~~~C------~C~~~~~C~~~~C~C~~G~~G~~c~--~~~~~C~~~~--~C~~~~~C~~~~C 205 (243)
|.-.| .|..+++|.=.+|+|.+||+|+.|+ ...+.|.... .|...|+|+-++|
T Consensus 545 -----------DnfsC~r~~g~lC~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg~C 607 (783)
T KOG1226|consen 545 -----------DNFSCERHKGVLCGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECGRC 607 (783)
T ss_pred -----------cCcccccccCcccCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCCce
Confidence 22234 6888889988899999999999998 4566776433 5888999988877
No 13
>KOG1226|consensus
Probab=97.96 E-value=0.00011 Score=68.40 Aligned_cols=137 Identities=27% Similarity=0.603 Sum_probs=84.1
Q ss_pred CeeeecCCCc---eeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCC----CCCCCCCCeeeeCCCCCeeecCCCcc-
Q psy13148 4 KLLRVINHNP---SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI----PSPCGPYSQCRDINGSPSCSCLPNYI- 75 (243)
Q Consensus 4 ~~C~~~~~~~---~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~----~~~C~~~~~C~~~~g~~~C~C~~G~~- 75 (243)
+.|. ..|.| .|.|.+||.|. .|.-..... ......+.|. +.+|...+.|. -..|.|.+...
T Consensus 467 ~~C~-g~G~~~CG~C~C~~G~~G~---~CEC~~~~~---ss~~~~~~Cr~~~~~~vCSgrG~C~----CGqC~C~~~~~~ 535 (783)
T KOG1226|consen 467 ALCH-GNGTFVCGQCRCDEGWLGK---KCECSTDEL---SSSEEEDKCRENSDSPVCSGRGDCV----CGQCVCHKPDNG 535 (783)
T ss_pred cccC-CCCcEEecceecCCCCCCC---cccCCcccc---CcHhHHhhccCCCCCCCcCCCCcEe----CCceEecCCCCC
Confidence 3454 34444 47899999999 763211100 0000123443 23688888887 35788887766
Q ss_pred ---cCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCccCCCCCCCCCCC
Q psy13148 76 ---GAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQ 152 (243)
Q Consensus 76 ---g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~ 152 (243)
|. .|+ | +.-.|.... ...|..++.|.=. +|.|.+||+|+ .|.-. .
T Consensus 536 ~i~G~--fCE--C-DnfsC~r~~-----------g~lC~g~G~C~CG----~CvC~~GwtG~---~C~C~---------~ 583 (783)
T KOG1226|consen 536 KIYGK--FCE--C-DNFSCERHK-----------GVLCGGHGRCECG----RCVCNPGWTGS---ACNCP---------L 583 (783)
T ss_pred ceeee--eee--c-cCccccccc-----------CcccCCCCeEeCC----cEEcCCCCccC---CCCCC---------C
Confidence 54 443 1 111222210 2357777887654 59999999999 55421 2
Q ss_pred CCcCC------CCCCCCeeeCCceecCCC-cccCCCcc
Q psy13148 153 QADPC------ICAPNAVCRDNVCVCLPD-YYGDGYTV 183 (243)
Q Consensus 153 ~~~~C------~C~~~~~C~~~~C~C~~G-~~G~~c~~ 183 (243)
+.+.| .|...|+|+=.+|+|... |.|..|+.
T Consensus 584 std~C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~CE~ 621 (783)
T KOG1226|consen 584 STDTCESSDGQICSGRGTCECGRCKCTDPPYSGEFCEK 621 (783)
T ss_pred CCccccCCCCceeCCCceeeCCceEcCCCCcCcchhhc
Confidence 55667 677778888789999865 99999983
No 14
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.93 E-value=5.7e-06 Score=49.21 Aligned_cols=34 Identities=32% Similarity=0.693 Sum_probs=29.4
Q ss_pred CCCCCCC--CCCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 44 YVNPCIP--SPCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 44 ~~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
|||||.. +.|..++.|+|+.|+|.|.|++||...
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 5788875 469889999999999999999999843
No 15
>KOG4260|consensus
Probab=97.85 E-value=8.5e-06 Score=66.75 Aligned_cols=73 Identities=29% Similarity=0.598 Sum_probs=53.8
Q ss_pred CCCCCCCCCCC--CCCCCCCCeeeeCCCCCeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCee
Q psy13148 39 ESPPEYVNPCI--PSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQC 116 (243)
Q Consensus 39 ~~~~~~~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C 116 (243)
+..+.|||+|. +.||..+..|+|+.|+|.|...+||.+....|+ .|. +.|. ..+..|
T Consensus 230 e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~-~~~--d~~~------------------~kn~~c 288 (350)
T KOG4260|consen 230 EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQ-FCA--DVCA------------------SKNRPC 288 (350)
T ss_pred ccccccHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhh-hhh--hhcc------------------cCCCCc
Confidence 55778999997 568999999999999999999999987422122 111 1111 234578
Q ss_pred eeCCCCceeeCCCCCc
Q psy13148 117 RVINHSPVCYCPDGFI 132 (243)
Q Consensus 117 ~~~~g~~~C~C~~G~~ 132 (243)
.++.+.|+|.|..|+.
T Consensus 289 ~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 289 MNIDGQYRCVCFSGLI 304 (350)
T ss_pred ccCCccEEEEecccce
Confidence 8999999999998873
No 16
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.82 E-value=1.4e-05 Score=47.47 Aligned_cols=27 Identities=30% Similarity=0.698 Sum_probs=24.4
Q ss_pred CCCCCCCCeeeeCCCCceeeCCCCCcc
Q psy13148 107 PGSCGQGAQCRVINHSPVCYCPDGFIG 133 (243)
Q Consensus 107 ~~~C~~~~~C~~~~g~~~C~C~~G~~g 133 (243)
.+.|..++.|+|+.|+|+|.|++||..
T Consensus 9 ~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 9 PHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp SSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred CCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 567888899999999999999999983
No 17
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.82 E-value=9e-06 Score=46.51 Aligned_cols=30 Identities=37% Similarity=0.790 Sum_probs=24.6
Q ss_pred CCCCCCCeeeeCCCCceeeCCCCCccCCCC
Q psy13148 108 GSCGQGAQCRVINHSPVCYCPDGFIGDAFS 137 (243)
Q Consensus 108 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~ 137 (243)
+.|+.+|+|+++.++|.|+|++||.|+++.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~ 35 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDGFF 35 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCSTC
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCCcC
Confidence 468999999999999999999999999864
No 18
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.79 E-value=3.7e-05 Score=44.50 Aligned_cols=33 Identities=33% Similarity=0.877 Sum_probs=29.3
Q ss_pred CCCCCC-CCCCCCCeeeeCCCCCeeecCCCcc-cC
Q psy13148 45 VNPCIP-SPCGPYSQCRDINGSPSCSCLPNYI-GA 77 (243)
Q Consensus 45 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~-g~ 77 (243)
+++|.. .+|.++++|+++.++|.|.|++||. |.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~ 36 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGR 36 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCC
Confidence 567877 7899999999999999999999999 66
No 19
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.76 E-value=1.3e-05 Score=44.68 Aligned_cols=30 Identities=37% Similarity=0.977 Sum_probs=27.0
Q ss_pred CCCCCCCCCCeeeeCC-CCCeeecCCCcccC
Q psy13148 48 CIPSPCGPYSQCRDIN-GSPSCSCLPNYIGA 77 (243)
Q Consensus 48 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~ 77 (243)
|.+.||.++++|++.. +.|.|.|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 4567999999999988 89999999999986
No 20
>KOG0994|consensus
Probab=97.63 E-value=0.00034 Score=67.48 Aligned_cols=73 Identities=27% Similarity=0.757 Sum_probs=42.2
Q ss_pred eeeCCCCcee-eCCCCCccCCCC----CCccCCCCCCCCCCCCCcCCCCCCC--------Ceee------CCceecCCCc
Q psy13148 116 CRVINHSPVC-YCPDGFIGDAFS----SCYPKPIEPIQAPEQQADPCICAPN--------AVCR------DNVCVCLPDY 176 (243)
Q Consensus 116 C~~~~g~~~C-~C~~G~~g~~~~----~C~~~~~~~~~~~~~~~~~C~C~~~--------~~C~------~~~C~C~~G~ 176 (243)
|.....++.| +|..||.|+++. .|. +|+|..+ ..|. +..|.|.+||
T Consensus 878 CqD~T~G~~CdrCl~GyyGdP~lg~g~~Cr---------------PCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY 942 (1758)
T KOG0994|consen 878 CQDSTTGHSCDRCLDGYYGDPRLGSGIGCR---------------PCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGY 942 (1758)
T ss_pred ccccccccchhhhhccccCCcccCCCCCCC---------------CCCCCCCCccchhccccccccccccceeeecccCc
Confidence 5556667788 899999988653 233 2233211 1232 1289999999
Q ss_pred ccCCCccCCCCCCCCCCCCCCCcccCCCc
Q psy13148 177 YGDGYTVCRPECIRNSDCANNKACIRNKC 205 (243)
Q Consensus 177 ~G~~c~~~~~~C~~~~~C~~~~~C~~~~C 205 (243)
+|.+|+.+.+.=. .++ .++|+|..-.|
T Consensus 943 ~G~RCe~CA~~~f-GnP-~~GGtCq~CeC 969 (1758)
T KOG0994|consen 943 SGSRCEICADNHF-GNP-SEGGTCQKCEC 969 (1758)
T ss_pred cccchhhhccccc-CCc-ccCCccccccc
Confidence 9999984332111 112 23666665444
No 21
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.50 E-value=5.3e-05 Score=42.18 Aligned_cols=27 Identities=30% Similarity=0.845 Sum_probs=24.7
Q ss_pred CCCCCCCeeeeCC-CCceeeCCCCCccC
Q psy13148 108 GSCGQGAQCRVIN-HSPVCYCPDGFIGD 134 (243)
Q Consensus 108 ~~C~~~~~C~~~~-g~~~C~C~~G~~g~ 134 (243)
++|.++++|+... +.|+|.|++||+|+
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 4799999999988 88999999999986
No 22
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.44 E-value=7.6e-05 Score=42.65 Aligned_cols=29 Identities=34% Similarity=0.840 Sum_probs=23.6
Q ss_pred CCCCCCCeeeeCCCCCeeecCCCcccCCC
Q psy13148 51 SPCGPYSQCRDINGSPSCSCLPNYIGAPP 79 (243)
Q Consensus 51 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~ 79 (243)
..|..+++|+++.++|.|.|++||+|++.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDGF 34 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCST
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCCc
Confidence 46888999999999999999999999975
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.43 E-value=0.00025 Score=40.47 Aligned_cols=33 Identities=36% Similarity=0.897 Sum_probs=28.9
Q ss_pred CCCCCC-CCCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 45 VNPCIP-SPCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 45 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
+++|.. .+|.+++.|++..+.|.|.|++||.|.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCC
Confidence 466766 689888999999999999999999987
No 24
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.23 E-value=0.0006 Score=39.25 Aligned_cols=27 Identities=33% Similarity=0.789 Sum_probs=23.9
Q ss_pred CCCCCCCeeeeCCCCceeeCCCCCc-cC
Q psy13148 108 GSCGQGAQCRVINHSPVCYCPDGFI-GD 134 (243)
Q Consensus 108 ~~C~~~~~C~~~~g~~~C~C~~G~~-g~ 134 (243)
.+|.++++|++..++|.|.|++||. |.
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~~g~ 36 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYTDGR 36 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCccCC
Confidence 3688888999999999999999998 65
No 25
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.18 E-value=8.2e-05 Score=57.91 Aligned_cols=117 Identities=30% Similarity=0.772 Sum_probs=68.0
Q ss_pred CCeeeecCCCceeecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCC-----CCCCCCCeeeeCC-----CCCeeecCC
Q psy13148 3 AKLLRVINHNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIP-----SPCGPYSQCRDIN-----GSPSCSCLP 72 (243)
Q Consensus 3 ~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~-----~~C~~~~~C~~~~-----g~~~C~C~~ 72 (243)
||..+.+.+.|.|.|.+||.......| +...+|.. .+|+..+.|++.. ..|.|.|.+
T Consensus 10 NG~LiQMSNHfEC~Cnegfvl~~EntC-------------E~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~ 76 (197)
T PF06247_consen 10 NGYLIQMSNHFECKCNEGFVLKNENTC-------------EEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCIN 76 (197)
T ss_dssp TEEEEEESSEEEEEESTTEEEEETTEE-------------EE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-T
T ss_pred CCEEEEccCceEEEcCCCcEEcccccc-------------ccceecCcccccCccccchhhhhcCCCcccceeEEEeccc
Confidence 466677788999999999976644345 44556653 4799999999654 468999999
Q ss_pred CcccCCCCCcc-CCCCCCCCCCCCccc---------------------CCccc----CCCCCCCCCCCeeeeCCCCceee
Q psy13148 73 NYIGAPPNCRP-ECVQNTECPYDKACI---------------------NEKCR----DPCPGSCGQGAQCRVINHSPVCY 126 (243)
Q Consensus 73 G~~g~~~~c~~-~C~~~~~C~~~~~C~---------------------~~~C~----~~C~~~C~~~~~C~~~~g~~~C~ 126 (243)
||+.....|.+ .|.. -.|. .+.|+ +++|+ .+|.-.|..+..|....+-|+|.
T Consensus 77 gY~~~~~vCvp~~C~~-~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LKCk~nE~CK~~~~~Y~C~ 154 (197)
T PF06247_consen 77 GYILKQGVCVPNKCNN-KDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLKCKENEECKLVDGYYKCV 154 (197)
T ss_dssp TEEESSSSEEEGGGSS----T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE--------TTTEEEEEETTEEEEE
T ss_pred CceeeCCeEchhhcCc-eecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeeecCCCcceeeeCcEEEee
Confidence 99876443432 2221 1122 11111 11332 35555677788999998889999
Q ss_pred CCCCCccC
Q psy13148 127 CPDGFIGD 134 (243)
Q Consensus 127 C~~G~~g~ 134 (243)
+..||.++
T Consensus 155 ~~~~~~~~ 162 (197)
T PF06247_consen 155 CKEGFPGD 162 (197)
T ss_dssp E-TT-EEE
T ss_pred cCCCCCCC
Confidence 99999665
No 26
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.69 E-value=0.0028 Score=35.54 Aligned_cols=28 Identities=43% Similarity=1.044 Sum_probs=24.1
Q ss_pred CCC-CCCCCCCeeeeCCCCCeeecCCCccc
Q psy13148 48 CIP-SPCGPYSQCRDINGSPSCSCLPNYIG 76 (243)
Q Consensus 48 C~~-~~C~~~~~C~~~~g~~~C~C~~G~~g 76 (243)
|.. .+|.++ +|++..++|.|.|++||.|
T Consensus 2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 2 CASGGPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCcCCCCCC-EEECCCCCeEeECCCCCcc
Confidence 344 578888 9999999999999999999
No 27
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.67 E-value=0.0027 Score=35.37 Aligned_cols=28 Identities=36% Similarity=0.871 Sum_probs=24.9
Q ss_pred CCCCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 50 PSPCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 50 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
..+|.++++|++..+.|.|.|+.||.|.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4678888999999999999999999886
No 28
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.66 E-value=0.0036 Score=35.42 Aligned_cols=26 Identities=35% Similarity=0.824 Sum_probs=23.5
Q ss_pred CCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 109 SCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 109 ~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
+|.+++.|++..+.|.|.|++||.|.
T Consensus 10 ~C~~~~~C~~~~~~~~C~C~~g~~g~ 35 (38)
T cd00054 10 PCQNGGTCVNTVGSYRCSCPPGYTGR 35 (38)
T ss_pred CcCCCCEeECCCCCeEeECCCCCcCC
Confidence 67777899999999999999999986
No 29
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.32 E-value=0.004 Score=32.03 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=17.0
Q ss_pred CCeeecCCCcccCCCCCccCCCCCCC
Q psy13148 65 SPSCSCLPNYIGAPPNCRPECVQNTE 90 (243)
Q Consensus 65 ~~~C~C~~G~~g~~~~c~~~C~~~~~ 90 (243)
+|+|+|++||... .-...|.+++|
T Consensus 1 sy~C~C~~Gy~l~--~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLS--PDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCC--CCCCccccCCC
Confidence 5899999999865 22236777654
No 30
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.21 E-value=0.0047 Score=31.75 Aligned_cols=18 Identities=44% Similarity=0.842 Sum_probs=13.8
Q ss_pred CceeeCCCCCcc--CCCCCCc
Q psy13148 122 SPVCYCPDGFIG--DAFSSCY 140 (243)
Q Consensus 122 ~~~C~C~~G~~g--~~~~~C~ 140 (243)
+|+|+|++||+. ++.+ |.
T Consensus 1 sy~C~C~~Gy~l~~d~~~-C~ 20 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRS-CE 20 (24)
T ss_pred CEEeeCCCCCcCCCCCCc-cc
Confidence 589999999974 4454 87
No 31
>KOG0994|consensus
Probab=96.17 E-value=0.019 Score=56.08 Aligned_cols=60 Identities=30% Similarity=0.659 Sum_probs=36.7
Q ss_pred eeecCCCcee-ecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC--------Ceee--eCCCCCeeecCCCc
Q psy13148 6 LRVINHNPSC-TCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPY--------SQCR--DINGSPSCSCLPNY 74 (243)
Q Consensus 6 C~~~~~~~~C-~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~--------~~C~--~~~g~~~C~C~~G~ 74 (243)
|.+...+++| +|..||.|+|..- ....|.+-||..+ ..|. +......|.|.+||
T Consensus 878 CqD~T~G~~CdrCl~GyyGdP~lg---------------~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY 942 (1758)
T KOG0994|consen 878 CQDSTTGHSCDRCLDGYYGDPRLG---------------SGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGY 942 (1758)
T ss_pred ccccccccchhhhhccccCCcccC---------------CCCCCCCCCCCCCCccchhccccccccccccceeeecccCc
Confidence 3445567778 6999999997631 1234444444332 1243 22234679999999
Q ss_pred ccCCCCCc
Q psy13148 75 IGAPPNCR 82 (243)
Q Consensus 75 ~g~~~~c~ 82 (243)
+|. .|+
T Consensus 943 ~G~--RCe 948 (1758)
T KOG0994|consen 943 SGS--RCE 948 (1758)
T ss_pred ccc--chh
Confidence 998 555
No 32
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.03 E-value=0.0092 Score=33.11 Aligned_cols=27 Identities=37% Similarity=0.903 Sum_probs=23.7
Q ss_pred CCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 108 GSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 108 ~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
.+|.+++.|++..+.|.|.|+.||.|+
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 367778899999899999999999886
No 33
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.01 E-value=0.0097 Score=33.28 Aligned_cols=24 Identities=38% Similarity=0.949 Sum_probs=21.7
Q ss_pred CCCCCCeeeeCCCCceeeCCCCCcc
Q psy13148 109 SCGQGAQCRVINHSPVCYCPDGFIG 133 (243)
Q Consensus 109 ~C~~~~~C~~~~g~~~C~C~~G~~g 133 (243)
+|.++ +|++..++|+|.|++||.|
T Consensus 7 ~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 7 PCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCC-EEECCCCCeEeECCCCCcc
Confidence 67777 8999999999999999998
No 34
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.94 E-value=0.0034 Score=27.38 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=10.3
Q ss_pred ceecCCCcccCCC
Q psy13148 169 VCVCLPDYYGDGY 181 (243)
Q Consensus 169 ~C~C~~G~~G~~c 181 (243)
.|+|++||+|+.|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4899999999875
No 35
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.91 E-value=0.009 Score=33.07 Aligned_cols=24 Identities=33% Similarity=0.773 Sum_probs=20.3
Q ss_pred CCCCCCeee--CCceecCCCcccCCC
Q psy13148 158 ICAPNAVCR--DNVCVCLPDYYGDGY 181 (243)
Q Consensus 158 ~C~~~~~C~--~~~C~C~~G~~G~~c 181 (243)
.|..+++|+ ..+|+|.+||+|+.|
T Consensus 7 ~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 477889999 459999999999865
No 36
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.02 E-value=0.03 Score=30.99 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.5
Q ss_pred CCCeeeecCCCceeecCCCCccC
Q psy13148 2 FAKLLRVINHNPSCTCKAGFTGD 24 (243)
Q Consensus 2 ~~~~C~~~~~~~~C~C~~G~~g~ 24 (243)
++|+|+...+ +|.|.+||+|.
T Consensus 10 ~~G~C~~~~g--~C~C~~g~~G~ 30 (32)
T PF07974_consen 10 GHGTCVSPCG--RCVCDSGYTGP 30 (32)
T ss_pred CCCEEeCCCC--EEECCCCCcCC
Confidence 6788886634 89999999998
No 37
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=94.36 E-value=0.034 Score=31.65 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.2
Q ss_pred eeeecCCCceeecCCCCccCC
Q psy13148 5 LLRVINHNPSCTCKAGFTGDP 25 (243)
Q Consensus 5 ~C~~~~~~~~C~C~~G~~g~~ 25 (243)
.|++++++|+|.|++||...+
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKLAE 31 (36)
T ss_dssp EEEEETTSEEEE-STTEEE-T
T ss_pred CCccCCCceEeECCCCCEECc
Confidence 789999999999999998763
No 38
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=93.89 E-value=0.0078 Score=47.09 Aligned_cols=94 Identities=21% Similarity=0.501 Sum_probs=56.7
Q ss_pred CeeeeCCCCCeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCC-----CCceeeCCCCC
Q psy13148 57 SQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVIN-----HSPVCYCPDGF 131 (243)
Q Consensus 57 ~~C~~~~g~~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~-----g~~~C~C~~G~ 131 (243)
+..+.....|.|.|.+||..... .+|+...+|.... .=..+|+.-+.|++.. ..|.|.|.+||
T Consensus 11 G~LiQMSNHfEC~Cnegfvl~~E---ntCE~kv~C~~~e---------~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY 78 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNEGFVLKNE---NTCEEKVECDKLE---------NVNKPCGDYAKCINQANKGEERAYKCDCINGY 78 (197)
T ss_dssp EEEEEESSEEEEEESTTEEEEET---TEEEE----SG-G---------GTTSEEETTEEEEE-SSTTSSTSEEEEE-TTE
T ss_pred CEEEEccCceEEEcCCCcEEccc---cccccceecCccc---------ccCccccchhhhhcCCCcccceeEEEecccCc
Confidence 45555667899999999986411 1344444443310 0034788889998865 45999999999
Q ss_pred ccCCCCCCccCCCCCCCCCCCCCcCC---CCCCCCeeeCC-------ceecCCCcc
Q psy13148 132 IGDAFSSCYPKPIEPIQAPEQQADPC---ICAPNAVCRDN-------VCVCLPDYY 177 (243)
Q Consensus 132 ~g~~~~~C~~~~~~~~~~~~~~~~~C---~C~~~~~C~~~-------~C~C~~G~~ 177 (243)
+...-. |.+ +.| .|. .|.|+-. .|+|.-|+.
T Consensus 79 ~~~~~v-Cvp-------------~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 79 ILKQGV-CVP-------------NKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp EESSSS-EEE-------------GGGSS---T-TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred eeeCCe-Ech-------------hhcCceecC-CCeEEecCCCCCCceeEeeeceE
Confidence 765443 763 566 677 5788621 899999987
No 39
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=93.23 E-value=0.06 Score=30.62 Aligned_cols=20 Identities=45% Similarity=0.806 Sum_probs=17.1
Q ss_pred eeeeCCCCCeeecCCCcccC
Q psy13148 58 QCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 58 ~C~~~~g~~~C~C~~G~~g~ 77 (243)
+|++++++|+|.|++||+..
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKLA 30 (36)
T ss_dssp EEEEETTSEEEE-STTEEE-
T ss_pred CCccCCCceEeECCCCCEEC
Confidence 89999999999999999876
No 40
>smart00051 DSL delta serrate ligand.
Probab=92.34 E-value=0.19 Score=32.43 Aligned_cols=42 Identities=21% Similarity=0.478 Sum_probs=29.1
Q ss_pred ceeeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC----CCCCCCeeeCC-ceecCCCcccCCC
Q psy13148 123 PVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC----ICAPNAVCRDN-VCVCLPDYYGDGY 181 (243)
Q Consensus 123 ~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C----~C~~~~~C~~~-~C~C~~G~~G~~c 181 (243)
++-.|.++|.|. .|. ..| ....+.+|... .++|++||+|..|
T Consensus 17 ~rv~C~~~~yG~---~C~--------------~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGE---GCN--------------KFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCC---ccC--------------CEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 456789999998 676 234 23445566443 7899999999764
No 41
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=91.77 E-value=0.051 Score=30.92 Aligned_cols=31 Identities=32% Similarity=0.759 Sum_probs=21.7
Q ss_pred CCCCCCCCCCeeeeCC-CCCeeecCCCcccCC
Q psy13148 48 CIPSPCGPYSQCRDIN-GSPSCSCLPNYIGAP 78 (243)
Q Consensus 48 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~ 78 (243)
|....|..++.|++.. |++.|.|..||...+
T Consensus 2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEEEE-TTEEEET
T ss_pred ccCccCCCCcccEEcCCCCEEEEeeCCccccC
Confidence 4456778889999776 999999999998763
No 42
>smart00051 DSL delta serrate ligand.
Probab=88.78 E-value=0.67 Score=29.89 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=28.9
Q ss_pred CeeecCCCcccCCCCCccCCCCCCCCCCCCcccCCcccCCCCCCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 66 PSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 66 ~~C~C~~G~~g~~~~c~~~C~~~~~C~~~~~C~~~~C~~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
+.-.|.++|.|. .|...|...+ ....+.+|.. .| .+.|.+||+|.
T Consensus 17 ~rv~C~~~~yG~--~C~~~C~~~~-------------------d~~~~~~Cd~-~G--~~~C~~Gw~G~ 61 (63)
T smart00051 17 IRVTCDENYYGE--GCNKFCRPRD-------------------DFFGHYTCDE-NG--NKGCLEGWMGP 61 (63)
T ss_pred EEeeCCCCCcCC--ccCCEeCcCc-------------------cccCCccCCc-CC--CEecCCCCcCC
Confidence 345788999999 6655453222 2334456644 34 38899999997
No 43
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=88.66 E-value=0.47 Score=38.68 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCCCCCCCCC--CCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 42 PEYVNPCIPS--PCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 42 ~~~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
+.++++|... +|. ..|.++.|+|.|.|.+||+..
T Consensus 184 C~~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~~~ 219 (224)
T cd01475 184 CVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGYALL 219 (224)
T ss_pred CcCchhhcCCCCCcc--ceEEcCCCCEEeECCCCccCC
Confidence 3577888643 454 479999999999999999875
No 44
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=84.36 E-value=1.1 Score=36.51 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 107 PGSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 107 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
++.|.. .|.+..|+|.|.|++||+..
T Consensus 194 ~~~c~~--~C~~~~g~~~c~c~~g~~~~ 219 (224)
T cd01475 194 SHVCQQ--VCISTPGSYLCACTEGYALL 219 (224)
T ss_pred CCCccc--eEEcCCCCEEeECCCCccCC
Confidence 345653 79999999999999999764
No 45
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=83.61 E-value=1.8 Score=26.43 Aligned_cols=21 Identities=33% Similarity=0.873 Sum_probs=17.4
Q ss_pred CCCCCCeeeCCceecCCCccc
Q psy13148 158 ICAPNAVCRDNVCVCLPDYYG 178 (243)
Q Consensus 158 ~C~~~~~C~~~~C~C~~G~~G 178 (243)
.|..++.|++.+|.|++||.-
T Consensus 27 qC~~~s~C~~g~C~C~~g~~~ 47 (52)
T PF01683_consen 27 QCIGGSVCVNGRCQCPPGYVE 47 (52)
T ss_pred CCCCcCEEcCCEeECCCCCEe
Confidence 566788998889999999863
No 46
>KOG1836|consensus
Probab=83.56 E-value=2.9 Score=43.92 Aligned_cols=51 Identities=33% Similarity=0.772 Sum_probs=31.1
Q ss_pred ee-eCCCCCccCCCCCCccCCCCCCCCCCCCCcCCCCCCCCeeeCC------cee-cCCCcccCCCccCC
Q psy13148 124 VC-YCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDN------VCV-CLPDYYGDGYTVCR 185 (243)
Q Consensus 124 ~C-~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C~C~~~~~C~~~------~C~-C~~G~~G~~c~~~~ 185 (243)
+| +|..||.|+.... . ..|-..|+|.+++.|... .|. |++||+|.+|+.+.
T Consensus 757 ~C~~C~~GfYg~~~~~-~----------~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~ 815 (1705)
T KOG1836|consen 757 QCAQCVDGFYGLPDLG-T----------SGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA 815 (1705)
T ss_pred chhhhcCCCCCccccC-C----------CCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence 45 7888887763220 0 001113366666666543 787 99999999987444
No 47
>KOG1218|consensus
Probab=82.72 E-value=23 Score=29.93 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=24.4
Q ss_pred CCceecCCCcccCCCccCCCCCCCCCCCCCCCcccCC
Q psy13148 167 DNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRN 203 (243)
Q Consensus 167 ~~~C~C~~G~~G~~c~~~~~~C~~~~~C~~~~~C~~~ 203 (243)
+..|.|.+||.|..+......|.....|.+++.|+..
T Consensus 161 ~~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~ 197 (316)
T KOG1218|consen 161 NGICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRS 197 (316)
T ss_pred CCceeccCCcccccccccCCCcCCCcccCCCCeeecc
Confidence 3378899999998877333335555566666666654
No 48
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=78.93 E-value=5.7 Score=24.15 Aligned_cols=22 Identities=32% Similarity=0.795 Sum_probs=15.8
Q ss_pred CCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 109 SCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 109 ~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
.|..++.|++. +|.|++||.-.
T Consensus 27 qC~~~s~C~~g----~C~C~~g~~~~ 48 (52)
T PF01683_consen 27 QCIGGSVCVNG----RCQCPPGYVEV 48 (52)
T ss_pred CCCCcCEEcCC----EeECCCCCEec
Confidence 45567788653 69999998644
No 49
>KOG1836|consensus
Probab=78.70 E-value=15 Score=38.99 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=36.6
Q ss_pred cee-ecCCCCccCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeCC--CCCeee-cCCCcccCCCCCc
Q psy13148 13 PSC-TCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDIN--GSPSCS-CLPNYIGAPPNCR 82 (243)
Q Consensus 13 ~~C-~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~--g~~~C~-C~~G~~g~~~~c~ 82 (243)
..| +|..||.|++.. .+. ..|.+-+|..++.|..+. ....|. |++||+|. .|+
T Consensus 756 ~~C~~C~~GfYg~~~~--------------~~~-~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~--rCe 812 (1705)
T KOG1836|consen 756 GQCAQCVDGFYGLPDL--------------GTS-GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGL--RCE 812 (1705)
T ss_pred CchhhhcCCCCCcccc--------------CCC-CCCccCCCCCChhhcCcCcccceecCCCCCCCccc--ccc
Confidence 344 588888888543 112 228877888887777544 456887 99999999 655
No 50
>KOG3512|consensus
Probab=75.82 E-value=23 Score=32.23 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=30.9
Q ss_pred eeeecCC-CceeecCCCCccCCCCCCcCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q psy13148 5 LLRVINH-NPSCTCKAGFTGDPRVFCSRIP-PPPPQESPPEYVNPCIPSPCGPY 56 (243)
Q Consensus 5 ~C~~~~~-~~~C~C~~G~~g~~~~~C~~~~-~~~~~~~~~~~~~~C~~~~C~~~ 56 (243)
.|+-... .++|.|...-+|..-..|-+.- .++++..+-.+.++|....|..+
T Consensus 286 ~Cv~d~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~h 339 (592)
T KOG3512|consen 286 RCVMDESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGH 339 (592)
T ss_pred eeeeccCCceEEecccCCCCCCcccccccccCCCccccccCCCccccccccchh
Confidence 5666554 4899999998898444442210 13455555566666665555443
No 51
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=72.32 E-value=3.7 Score=30.26 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCeeeecC--CCceeecCCCCccCCCCCCc
Q psy13148 3 AKLLRVIN--HNPSCTCKAGFTGDPRVFCS 30 (243)
Q Consensus 3 ~~~C~~~~--~~~~C~C~~G~~g~~~~~C~ 30 (243)
||.|.-.. ..+.|.|..||+|. +|+
T Consensus 55 HG~C~yI~dl~~~~CrC~~GYtGe---RCE 81 (139)
T PHA03099 55 HGDCIHARDIDGMYCRCSHGYTGI---RCQ 81 (139)
T ss_pred CCEEEeeccCCCceeECCCCcccc---ccc
Confidence 56787654 78999999999999 884
No 52
>PHA02887 EGF-like protein; Provisional
Probab=72.32 E-value=3.2 Score=30.06 Aligned_cols=24 Identities=29% Similarity=0.739 Sum_probs=18.7
Q ss_pred CCCCCCeeeCC------ceecCCCcccCCCc
Q psy13148 158 ICAPNAVCRDN------VCVCLPDYYGDGYT 182 (243)
Q Consensus 158 ~C~~~~~C~~~------~C~C~~G~~G~~c~ 182 (243)
-|- +|+|.-. .|.|+.||+|.+|+
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE 122 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCD 122 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCCC
Confidence 354 4688633 89999999999987
No 53
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=71.45 E-value=5.1 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=12.8
Q ss_pred ceecCCCcccCCCc
Q psy13148 169 VCVCLPDYYGDGYT 182 (243)
Q Consensus 169 ~C~C~~G~~G~~c~ 182 (243)
+|.|+++|+|..|+
T Consensus 20 ~C~C~~~~~G~~C~ 33 (50)
T cd00055 20 QCECKPNTTGRRCD 33 (50)
T ss_pred EEeCCCcCCCCCCC
Confidence 89999999999986
No 54
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=69.37 E-value=5.9 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.575 Sum_probs=25.3
Q ss_pred CCCCCCC---CCCCCCCeeeeC--CCCCeeecCCCcccCCCCCc
Q psy13148 44 YVNPCIP---SPCGPYSQCRDI--NGSPSCSCLPNYIGAPPNCR 82 (243)
Q Consensus 44 ~~~~C~~---~~C~~~~~C~~~--~g~~~C~C~~G~~g~~~~c~ 82 (243)
++..|.+ +-|.++ .|.-. ...+.|.|..||+|. +|+
T Consensus 41 ~i~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGe--RCE 81 (139)
T PHA03099 41 AIRLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGI--RCQ 81 (139)
T ss_pred ccccCChhhCCEeECC-EEEeeccCCCceeECCCCcccc--ccc
Confidence 3455653 347765 88743 367899999999999 554
No 55
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=69.00 E-value=5.7 Score=28.38 Aligned_cols=32 Identities=41% Similarity=0.919 Sum_probs=24.2
Q ss_pred CCCCC-CCCCCCCCeeeeCCCCCeeecCCCcccC
Q psy13148 45 VNPCI-PSPCGPYSQCRDINGSPSCSCLPNYIGA 77 (243)
Q Consensus 45 ~~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~g~ 77 (243)
.+.|. ...|+.++.|.. .....|.|.+||.-+
T Consensus 77 ~d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICNS-NNSPKCSCLPGFEPK 109 (110)
T ss_pred ccCCCCccccCCccEeCC-CCCCceECCCCcCCC
Confidence 45776 468999999954 345679999999753
No 56
>KOG1218|consensus
Probab=68.19 E-value=73 Score=26.88 Aligned_cols=40 Identities=33% Similarity=0.929 Sum_probs=24.0
Q ss_pred eeeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC----CCCCCCeeeCC--ceecCCCcc
Q psy13148 124 VCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC----ICAPNAVCRDN--VCVCLPDYY 177 (243)
Q Consensus 124 ~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C----~C~~~~~C~~~--~C~C~~G~~ 177 (243)
.|.|.+||.+. .+... ...| .+.+++.|... .+.+.+++.
T Consensus 163 ~c~c~~g~~g~---~~~~~-----------~~~c~~~~~~~~g~~C~~~~~~~~~~~~~~ 208 (316)
T KOG1218|consen 163 ICTCQPGFVGV---FCVES-----------CSGCSPLTACENGAKCNRSTGSCLCYPGPS 208 (316)
T ss_pred ceeccCCcccc---ccccc-----------CCCcCCCcccCCCCeeeccccccccCCCCc
Confidence 48899999998 56521 1113 56666677654 444444443
No 57
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=66.08 E-value=4.2 Score=24.41 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=15.0
Q ss_pred eeeCC--ceecCCCcccCCCcc
Q psy13148 164 VCRDN--VCVCLPDYYGDGYTV 183 (243)
Q Consensus 164 ~C~~~--~C~C~~G~~G~~c~~ 183 (243)
.|... +|.|+++|+|..|+.
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-E
T ss_pred cccCCCCEEeccccccCCcCcC
Confidence 45433 899999999999973
No 58
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=65.61 E-value=7.1 Score=27.88 Aligned_cols=26 Identities=42% Similarity=0.929 Sum_probs=19.9
Q ss_pred CCCCCCCeeeeCCCCceeeCCCCCccC
Q psy13148 108 GSCGQGAQCRVINHSPVCYCPDGFIGD 134 (243)
Q Consensus 108 ~~C~~~~~C~~~~g~~~C~C~~G~~g~ 134 (243)
..|+..+.|.. .....|.|.+||..+
T Consensus 84 ~~CG~~g~C~~-~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 84 GFCGPNGICNS-NNSPKCSCLPGFEPK 109 (110)
T ss_pred cccCCccEeCC-CCCCceECCCCcCCC
Confidence 57899999954 345579999999643
No 59
>PHA02887 EGF-like protein; Provisional
Probab=63.68 E-value=8.1 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCCCCC---CCCCCCCeeeeC--CCCCeeecCCCcccC
Q psy13148 45 VNPCIP---SPCGPYSQCRDI--NGSPSCSCLPNYIGA 77 (243)
Q Consensus 45 ~~~C~~---~~C~~~~~C~~~--~g~~~C~C~~G~~g~ 77 (243)
..+|.+ +-|. +|.|.-. ...+.|.|..||+|.
T Consensus 83 f~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~ 119 (126)
T PHA02887 83 FEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGI 119 (126)
T ss_pred ccccChHhhCEee-CCEEEccccCCCceeECCCCcccC
Confidence 445653 3466 4688733 456899999999999
No 60
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=50.41 E-value=6.5 Score=25.28 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=19.1
Q ss_pred ceeeCCCCCccCCCCCCccCCCCCCCCCCCCCcCC-C---CCCCCeeeCC-ceecCCCcccCCC
Q psy13148 123 PVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPC-I---CAPNAVCRDN-VCVCLPDYYGDGY 181 (243)
Q Consensus 123 ~~C~C~~G~~g~~~~~C~~~~~~~~~~~~~~~~~C-~---C~~~~~C~~~-~C~C~~G~~G~~c 181 (243)
++-.|.+.|-|. .|. ..| + -..+-+|... .=+|.+||+|..|
T Consensus 17 ~rv~C~~nyyG~---~C~--------------~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 17 IRVVCDENYYGP---NCS--------------KFCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp ------TTEETT---TT---------------EE---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred EEEECCCCCCCc---ccc--------------CCcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 467889999998 676 234 0 0112244433 6679999999865
No 61
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=46.67 E-value=30 Score=20.41 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=15.1
Q ss_pred eeeecCCCceeecCCCCccCCCCCC
Q psy13148 5 LLRVINHNPSCTCKAGFTGDPRVFC 29 (243)
Q Consensus 5 ~C~~~~~~~~C~C~~G~~g~~~~~C 29 (243)
.|....| +|.|+++|+|. .|
T Consensus 12 ~C~~~~G--~C~C~~~~~G~---~C 31 (46)
T smart00180 12 TCDPDTG--QCECKPNVTGR---RC 31 (46)
T ss_pred cccCCCC--EEECCCCCCCC---CC
Confidence 5655444 89999999998 66
No 62
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=46.51 E-value=16 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.2
Q ss_pred CceeecCCCCccCC
Q psy13148 12 NPSCTCKAGFTGDP 25 (243)
Q Consensus 12 ~~~C~C~~G~~g~~ 25 (243)
.++|.|+.||..+.
T Consensus 17 ~~~C~CPeGyIlde 30 (34)
T PF09064_consen 17 PGQCFCPEGYILDE 30 (34)
T ss_pred CCceeCCCceEecC
Confidence 34899999998763
No 63
>KOG3516|consensus
Probab=42.16 E-value=22 Score=35.93 Aligned_cols=38 Identities=29% Similarity=0.784 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCeeeeCCCCCeeecC-CCcccCCCCCc
Q psy13148 43 EYVNPCIPSPCGPYSQCRDINGSPSCSCL-PNYIGAPPNCR 82 (243)
Q Consensus 43 ~~~~~C~~~~C~~~~~C~~~~g~~~C~C~-~G~~g~~~~c~ 82 (243)
.-++.|.+++|.+++.|...-..|.|.|. .||.|. .|.
T Consensus 543 ~i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~Ga--tCH 581 (1306)
T KOG3516|consen 543 GISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGA--TCH 581 (1306)
T ss_pred ccccccCCccccCCCcccccccceeEeccccccccc--ccc
Confidence 34577889999999999987788999998 899998 664
No 64
>KOG3607|consensus
Probab=36.03 E-value=39 Score=32.71 Aligned_cols=46 Identities=30% Similarity=0.778 Sum_probs=36.0
Q ss_pred CCCCCCCcccCCccc-------CCCCCCCCCCCeeeeCCCCceeeCCCCCccCCCCCCc
Q psy13148 89 TECPYDKACINEKCR-------DPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCY 140 (243)
Q Consensus 89 ~~C~~~~~C~~~~C~-------~~C~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~~C~ 140 (243)
..|..+..|++.+|+ +.|+..|..+++|.+. +.|.|.+||.+. .|.
T Consensus 604 t~Cg~~~vC~~~~C~~~~v~~~~~~~~~C~g~GVCnn~---~~ChC~~gwapp---~C~ 656 (716)
T KOG3607|consen 604 TSCGPGMICINHRCLSASVLNSSCCPTTCNGHGVCNNE---LNCHCEPGWAPP---FCF 656 (716)
T ss_pred CccCCCceecCCcchhhhhhcccccccccCCCcccCCC---cceeeCCCCCCC---ccc
Confidence 567777888888885 3456679889999765 469999999888 676
No 65
>KOG3514|consensus
Probab=31.73 E-value=35 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCeeeeCCCCCeeecC-CCcccCCCCCc
Q psy13148 47 PCIPSPCGPYSQCRDINGSPSCSCL-PNYIGAPPNCR 82 (243)
Q Consensus 47 ~C~~~~C~~~~~C~~~~g~~~C~C~-~G~~g~~~~c~ 82 (243)
.|.++||.++++|...-.+|.|.|. .+|.|. .|+
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~--~Ce 659 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGR--TCE 659 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCcccCc--ccc
Confidence 6889999999999988889999995 589888 665
No 66
>KOG3607|consensus
Probab=28.61 E-value=55 Score=31.73 Aligned_cols=44 Identities=20% Similarity=0.476 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccCCCcc-------CCCCCCCCCCCCeeecCC-ccc-CcccCCC
Q psy13148 190 RNSDCANNKACIRNKCK-------NPCVPGTCGEGASSWTTG-CTA-EKKRNDT 234 (243)
Q Consensus 190 ~~~~C~~~~~C~~~~C~-------~~C~~~~C~~~~~C~~~~-C~c-~g~~g~~ 234 (243)
+...|..+..|++.+|+ +.| +..|..+++|.+.. |.| +||.+.-
T Consensus 602 dGt~Cg~~~vC~~~~C~~~~v~~~~~~-~~~C~g~GVCnn~~~ChC~~gwapp~ 654 (716)
T KOG3607|consen 602 DGTSCGPGMICINHRCLSASVLNSSCC-PTTCNGHGVCNNELNCHCEPGWAPPF 654 (716)
T ss_pred CCCccCCCceecCCcchhhhhhccccc-ccccCCCcccCCCcceeeCCCCCCCc
Confidence 34568888889999993 334 66799999998887 999 9887753
No 67
>KOG3516|consensus
Probab=28.39 E-value=42 Score=34.07 Aligned_cols=35 Identities=31% Similarity=0.873 Sum_probs=29.2
Q ss_pred CCC-CCCCCCCCeeeeCCCCceeeCC-CCCccCCCCCCcc
Q psy13148 104 DPC-PGSCGQGAQCRVINHSPVCYCP-DGFIGDAFSSCYP 141 (243)
Q Consensus 104 ~~C-~~~C~~~~~C~~~~g~~~C~C~-~G~~g~~~~~C~~ 141 (243)
|+| +++|.+++.|...-..|.|.|. .||.|. .|..
T Consensus 546 drClPN~CehgG~C~Qs~~~f~C~C~~TGY~Ga---tCHt 582 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQSWDDFECNCELTGYKGA---TCHT 582 (1306)
T ss_pred cccCCccccCCCcccccccceeEeccccccccc---cccC
Confidence 455 7899999999987778999998 899998 6763
No 68
>KOG0196|consensus
Probab=23.35 E-value=1.5e+02 Score=29.35 Aligned_cols=65 Identities=25% Similarity=0.545 Sum_probs=34.4
Q ss_pred CCCCCeeeeCCCCceeeCCCCCcc--CCCCCCccCCCCCCCCCC-CCCcCC-CCCCCCeeeC---CceecCCCcccC
Q psy13148 110 CGQGAQCRVINHSPVCYCPDGFIG--DAFSSCYPKPIEPIQAPE-QQADPC-ICAPNAVCRD---NVCVCLPDYYGD 179 (243)
Q Consensus 110 C~~~~~C~~~~g~~~C~C~~G~~g--~~~~~C~~~~~~~~~~~~-~~~~~C-~C~~~~~C~~---~~C~C~~G~~G~ 179 (243)
|...+......| .|.|.+||.- .+. .|+. ++.+.+-. .....| +|..+..=.. ..|.|..||.-.
T Consensus 248 C~~dGeWlvpiG--~C~C~aGye~~~~~~-~C~a--Cp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyRA 319 (996)
T KOG0196|consen 248 CSGDGEWLVPIG--GCVCKAGYEEAENGK-ACQA--CPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGYYRA 319 (996)
T ss_pred EcCCCcEEEEcC--ceeecCCCCcccCCC-ccee--CCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccC
Confidence 555555555445 4999999964 333 2552 22221111 123445 6655443221 189999999643
Done!