RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13148
(243 letters)
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 46.5 bits (110), Expect = 3e-06
Identities = 42/196 (21%), Positives = 63/196 (32%), Gaps = 38/196 (19%)
Query: 45 VNPCIPSPCGPYSQCRDI-NGSPSC-SCLPNYIGAPPNCRP--ECVQNTECPYDKACINE 100
+ C+ +PC P +QC +GS SC C ++G +C EC
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVP----------- 51
Query: 101 KCRDPCPGSCGQGAQCRVINHSPVCY-CPDGFIGDAFSSCYPKPIEPIQAPEQQADPC-- 157
D C S + +C C CP + G+ + + + + +PC
Sbjct: 52 ---DIC-FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 158 ---ICAPNAVCRDN--------VCVCLPDYYGDGYTVCRPECI-----RNSDCANNKACI 201
C +A C C C Y GDG + N CA N
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYH 167
Query: 202 RNKCKNPCVPGTCGEG 217
K P +P + E
Sbjct: 168 CIKDNCPHLPNSGQED 183
Score = 33.1 bits (75), Expect = 0.083
Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 17/157 (10%)
Query: 52 PCGPYSQCRDINGSPSC-SCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP--- 107
+C + C C P Y G P TE + +PC
Sbjct: 56 STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE------PENPCKDKT 109
Query: 108 GSCGQGAQC----RVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNA 163
+C + A+C + C C G+ GD + C
Sbjct: 110 HNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICG---EDSDLDGWPNLNLVCATNATY 166
Query: 164 VCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKAC 200
C + C LP+ + + + D N+
Sbjct: 167 HCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVT 203
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 44.3 bits (104), Expect = 2e-05
Identities = 39/210 (18%), Positives = 49/210 (23%), Gaps = 31/210 (14%)
Query: 15 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
C C G+ G C S CR N S CS L +
Sbjct: 448 CRCDTGYIGK---NCE--------------CQTQGRSSQELEGSCRKDNNSIICSGLGDC 490
Query: 75 IGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
+ C + Y + C + G R + C C GF G
Sbjct: 491 VCGQCLCHTSD-VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 549
Query: 135 AFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDG---YTVCRPECIRN 191
A E C+ CR NVC C Y C C +
Sbjct: 550 ACQ------CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKY 603
Query: 192 SDCANNKACIR----NKCKNPCVPGTCGEG 217
CA + C C
Sbjct: 604 ISCAECLKFEKGPFGKNCSAACPGLQLSNN 633
Score = 34.3 bits (78), Expect = 0.030
Identities = 30/202 (14%), Positives = 47/202 (23%), Gaps = 41/202 (20%)
Query: 15 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
C C ++ E CG + G C C P +
Sbjct: 495 CLCHTSDVPGKLIY------GQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGF 546
Query: 75 IGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
G C +C E C +P C +C VC C G+
Sbjct: 547 EG--SAC--------QCERT----TEGCLNPRRVECSGRGRC----RCNVCECHSGYQLP 588
Query: 135 AFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECIRNSDC 194
C P C C + +G + P +++
Sbjct: 589 LCQECP-------------GCPSPCGKYISCAEC-LKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 195 ANNKACIRNKCKNPCVPGTCGE 216
+ C + + C E
Sbjct: 635 VKGRTC-KERDSEGCWVAYTLE 655
Score = 28.9 bits (64), Expect = 1.6
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 6/113 (5%)
Query: 97 CINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADP 156
C + P A + S GF + P + +Q D
Sbjct: 378 CDGVQINVPITFQVKVTATECIQEQS-FVIRALGFTD--IVTVQVLPQCECRCRDQSRDR 434
Query: 157 CICAPNAVCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPC 209
+C +C C Y G C + S +C ++ C
Sbjct: 435 SLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIIC 484
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 40.1 bits (93), Expect = 3e-04
Identities = 29/155 (18%), Positives = 46/155 (29%), Gaps = 19/155 (12%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
C + G +C+ I G+ C+C Y C EC
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAE----------- 49
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDA-FSSCYPKPIEPIQAPEQQADPCICAPNA 163
G C Q C + C+C G+ SC EP+ + D P+
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 164 VCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNK 198
+ L + + R E + SD ++
Sbjct: 106 SEYTLLLNNLENAIALDFH-HRRELVFWSDVTLDR 139
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP 105
+PCI PC C+D +C+C P Y G+ NC +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--------------ELAKNECHPE 49
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGF 131
C C S C C G+
Sbjct: 50 RTDGCQHF--CLPGQESYTCSCAQGY 73
Score = 31.2 bits (71), Expect = 0.28
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 16/79 (20%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQ-CRDINGSPSCSCLP 72
+CTC G+ G C N C P C S +CSC
Sbjct: 27 TCTCSPGYEGS---NCELA------------KNECHPERTDGCQHFCLPGQESYTCSCAQ 71
Query: 73 NYIGAPPNCRPECVQNTEC 91
Y + + C
Sbjct: 72 GYRLGEDHKQCVPHDQCAC 90
Score = 28.1 bits (63), Expect = 2.5
Identities = 16/120 (13%), Positives = 22/120 (18%), Gaps = 20/120 (16%)
Query: 104 DPCPGS-CGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPN 162
PC C C+ C C G+ G +C E + C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NC-----------ELAKNECHPERT 51
Query: 163 AVCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGT-CGEGASSW 221
C+ C D + C W
Sbjct: 52 DGCQHFCL----PGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPW 107
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 38.5 bits (89), Expect = 0.001
Identities = 24/175 (13%), Positives = 44/175 (25%), Gaps = 17/175 (9%)
Query: 53 CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKA---CINEKCRDPCPGS 109
+ P +P +++ C + +P
Sbjct: 388 GLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHR 447
Query: 110 CGQGAQCRVINHSPVCYCPDGFIGDA--FSSCYPKPIEPIQAPEQQADPCICAPNAVCRD 167
C G VC C G++G S +P + + ++ +C+ C
Sbjct: 448 CNNGNGTFECG---VCRCGPGWLGSQCECSEEDYRPSQQDECSPRE-GQPVCSQRGECLC 503
Query: 168 NVCVCLPDYYGDGYT------VCRPECIRNSDCANNKACIRNKCKNPCVPGTCGE 216
CVC +G + C+ + C C C G
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCL--CDSDWTGY 556
Score = 37.8 bits (87), Expect = 0.003
Identities = 37/219 (16%), Positives = 52/219 (23%), Gaps = 40/219 (18%)
Query: 15 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
C C G+ G C ++ P + C P P R C C +
Sbjct: 460 CRCGPGWLGS---QCEC----SEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSD 512
Query: 75 IGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
G C C + C C QC C C + G
Sbjct: 513 FG--KITGKYC----------ECDDFSCVRYKGEMCSGHGQC----SCGDCLCDSDWTGY 556
Query: 135 AFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCL-PDYYGDGYTVCRPECIRNSD 193
+ ++ +C+ C CVC+ P YGD C
Sbjct: 557 YCNCTTRTD------TCMSSNGLLCSGRGKCECGSCVCIQPGSYGDT---CEKCPTCPDA 607
Query: 194 CANNKACIR-------NKCKNPCVPGTCGEGASSWTTGC 225
C K C+ C + S
Sbjct: 608 CTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELK 646
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 37.1 bits (85), Expect = 0.003
Identities = 24/156 (15%), Positives = 34/156 (21%), Gaps = 18/156 (11%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDP 105
N C+ + G C D+ C C + C EC
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQD------------ 45
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVC 165
P +C Q C + C C +GF D +
Sbjct: 46 -PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 166 RDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACI 201
+ T I SD + C
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 138
Score = 29.8 bits (66), Expect = 0.84
Identities = 18/119 (15%), Positives = 27/119 (22%), Gaps = 9/119 (7%)
Query: 104 DPC-PGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPN 162
+ C + G C + C CPDGF A C + DP C+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID--------ECQDPDTCSQL 52
Query: 163 AVCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCGEGASSW 221
V + C + + S K +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.005
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 36/123 (29%)
Query: 131 FIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAV-CRDNVCVCLPDYYGDG-----YTVC 184
F+ + Y + PI+ +Q P + + RD + Y D Y V
Sbjct: 82 FVEEVLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRL-------YNDNQVFAKYNVS 132
Query: 185 RPECIRNSDCANNKACIRNKCKN--P----CVPGTCGEGASSWTTGCTA-----EKKRND 233
R + +R P + G G G +W + K +
Sbjct: 133 RLQPYLK---------LRQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDF 182
Query: 234 TIY 236
I+
Sbjct: 183 KIF 185
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 35.2 bits (81), Expect = 0.006
Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 16/128 (12%)
Query: 13 PSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPS---PCGPYSQCRDINGSPSCS 69
+C C GF+ + + +N C CG +S C + GS C
Sbjct: 19 TACRCNPGFSSFSEII-------TTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCV 71
Query: 70 CLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPD 129
C P Y + C ++E C C C S C C
Sbjct: 72 CSPGYEPVSGAKTFKNESENTCQD----VDE-CSSG-QHQCDSSTVCFNTVGSYSCRCRP 125
Query: 130 GFIGDAFS 137
G+
Sbjct: 126 GWKPRHGI 133
Score = 29.8 bits (67), Expect = 0.46
Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 22/146 (15%)
Query: 52 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKAC--INEKCRDPCPGS 109
C S C + +C C P + + C INE C S
Sbjct: 8 WCPQDSSC---VNATACRCNPGFSSFSEIITTPM---------ETCDDINE-CATLSKVS 54
Query: 110 CGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEP--IQAPEQQADPCICAPNAVCRD 167
CG+ + C S C C G+ + + + E E + C + VC +
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 168 NV----CVCLPDYYGDGYT-VCRPEC 188
V C C P + + +
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPNNQKDT 140
Score = 29.0 bits (65), Expect = 0.74
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCI--PSPCGPYSQCRDINGSPSCSCL 71
C C G+ E+ + V+ C C + C + GS SC C
Sbjct: 69 DCVCSPGYEPV----SGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCR 124
Query: 72 PNYIGAPPNCRPECVQNTEC 91
P + ++T C
Sbjct: 125 PGWKPRHGIP--NNQKDTVC 142
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 35.1 bits (81), Expect = 0.008
Identities = 29/172 (16%), Positives = 42/172 (24%), Gaps = 39/172 (22%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
+ C SPC +C+D G +C+CL + G NC E C D
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---------- 87
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCI---CAP 161
+ C +S VC C G+ + P C
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLA---DN-----------GKACIPTGPYPCGK 129
Query: 162 NAVCRDNV----CVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPC 209
+ R D T + N + P
Sbjct: 130 QTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPE 181
Score = 32.8 bits (75), Expect = 0.065
Identities = 22/121 (18%), Positives = 27/121 (22%), Gaps = 33/121 (27%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
+CTC GF G C C C + S CSC
Sbjct: 64 TCTCLEGFEGK---NCEL-----------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Query: 74 YIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIG 133
Y A + C+ P CG+ R G
Sbjct: 110 YTLA--DNGKACIPTGPYP-----------------CGKQTLERRKRSVAQATSSSGEAP 150
Query: 134 D 134
D
Sbjct: 151 D 151
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 31.3 bits (70), Expect = 0.018
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 82 RPECVQNTECPYDKACINEKCRDP 105
RPECV N++CP ++AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.2 bits (62), Expect = 0.20
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 185 RPECIRNSDCANNKACIRNKCKNP 208
RPEC+ NSDC +N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 33.5 bits (77), Expect = 0.024
Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 29/128 (22%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPC-------GPYSQCRDINGSP 66
SC C GFT CS + E P PC P+PC + D
Sbjct: 24 SCECPDGFTDP---NCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGY 80
Query: 67 SCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCY 126
C C + G +C+ INE +PC G C + + C
Sbjct: 81 VCKCPRGFNG--IHCQHN-------------INECEVEPCKN----GGICTDLVANYSCE 121
Query: 127 CPDGFIGD 134
CP F+G
Sbjct: 122 CPGEFMGR 129
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 33.3 bits (77), Expect = 0.025
Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 36/122 (29%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
C C G+TG C VN C+ +PC + C D G C C+P
Sbjct: 29 ECQCLQGYTGP---RCE------------IDVNECVSNPCQNDATCLDQIGEFQCICMPG 73
Query: 74 YIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGS-CGQGAQCRVINHSPVCYCPDGFI 132
Y G +C E D C S C +C + C CP GF
Sbjct: 74 YEG--VHC------------------EVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113
Query: 133 GD 134
G
Sbjct: 114 GH 115
Score = 29.9 bits (68), Expect = 0.36
Identities = 33/139 (23%), Positives = 42/139 (30%), Gaps = 40/139 (28%)
Query: 48 CIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP 107
+PC +C + GS C CL Y G P C + +NE +P
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRCEID-------------VNECVSNP-- 52
Query: 108 GSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCI---CAPNAV 164
C A C C C G+ G C E D C C N
Sbjct: 53 --CQNDATCLDQIGEFQCICMPGYEGV---HC-----------EVNTDECASSPCLHNGR 96
Query: 165 CRDNV----CVCLPDYYGD 179
C D + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 33.5 bits (77), Expect = 0.029
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
VN C+ C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSC 139
G+C + R N C G S C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 33.1 bits (76), Expect = 0.032
Identities = 19/123 (15%), Positives = 29/123 (23%), Gaps = 34/123 (27%)
Query: 14 SCTCKAGFTGDP-RVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLP 72
C C F +P RV C C + R NG +CS
Sbjct: 25 ICDCPPDFELNPTRVGCVDT-------------RSG---NCYLDIRPRGDNGDTACSNEI 68
Query: 73 NYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFI 132
+ +C C + C + +C +GF
Sbjct: 69 GVGVSKASC---CCSLGKA--------------WGTPCEMCPAVNTSEYKILCPGGEGFR 111
Query: 133 GDA 135
+
Sbjct: 112 PNP 114
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.6 bits (76), Expect = 0.040
Identities = 15/74 (20%), Positives = 21/74 (28%)
Query: 53 CGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQ 112
C +++CRD C C+ NY G C E K I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 113 GAQCRVINHSPVCY 126
V+ + Y
Sbjct: 75 DLHSYVVMNHGRSY 88
Score = 27.0 bits (59), Expect = 5.3
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 9/84 (10%)
Query: 109 SCGQG-------AQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAP 161
+C A+CR C C + G+ C + P + +
Sbjct: 7 TCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR-QCVAEG-SPQRVNGKVKGRIFVGS 64
Query: 162 NAVCRDNVCVCLPDYYGDGYTVCR 185
+ V L Y +
Sbjct: 65 SQVPVVFENTDLHSYVVMNHGRSY 88
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 33.8 bits (76), Expect = 0.045
Identities = 23/164 (14%), Positives = 33/164 (20%), Gaps = 8/164 (4%)
Query: 67 SCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQG-AQCRVINHSPVC 125
C +C C + +C C G CR C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 126 Y--CPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCV--CLPDYY---G 178
CP + + + E + V CV C D Y
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE 296
Query: 179 DGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCGEGASSWT 222
DG C+ N K + +
Sbjct: 297 DGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTS 340
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 32.6 bits (75), Expect = 0.045
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
+ C SPC +C+D G +C+CL + G NC + C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
C +S VC C G+
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 26.1 bits (58), Expect = 7.2
Identities = 17/79 (21%), Positives = 21/79 (26%), Gaps = 16/79 (20%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
+CTC GF G C C C + S CSC
Sbjct: 64 TCTCLEGFEGK---NCEL-----------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Query: 74 YIGAPPNCRPECVQNTECP 92
Y A + C+ P
Sbjct: 110 YTLA--DNGKACIPTGPYP 126
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 32.6 bits (73), Expect = 0.061
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPP---NCRPECVQNTEC---PYDKACIN 99
+P + P CL G + + P +
Sbjct: 85 DPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFK 144
Query: 100 EKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
+ CPG C G C N +C CPDGF G
Sbjct: 145 TCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 31.6 bits (72), Expect = 0.098
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 19/90 (21%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
+ C P+PC C+D S C C + G C + C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC----------NIK 91
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
+ + +C C G+
Sbjct: 92 NG---RCKQFCKTGADSKVLCSCTTGYRLA 118
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 33.0 bits (74), Expect = 0.10
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Query: 50 PSPCGPYSQCRDING---SPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPC 106
C +S C+D++ + Y+ C PEC C PC
Sbjct: 250 DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPC 308
Query: 107 PGSCGQGAQCRVINHSPVCYC 127
P C + I+
Sbjct: 309 PKVCHLLEGEKTIDSVTSAQE 329
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.1 bits (72), Expect = 0.16
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 79 PNCRPECVQNTECPYDKACINEKCRDPC-PGSCGQGAQCRVINHSPVCYCPD-GFIGDAF 136
P E + E P + + G C G C V++ VC C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 137 SSCYP 141
S
Sbjct: 226 SQGKE 230
Score = 31.4 bits (70), Expect = 0.29
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 17/89 (19%)
Query: 13 PSCTCKAGFTGDPR----------------VFCSRIPPPPPQESPPEYVNPCIPSPCGPY 56
S + F G R V PP SP E C
Sbjct: 142 ASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNG 201
Query: 57 SQCRDINGSPSCSC-LPNYIGAPPNCRPE 84
C ++ C C + G + E
Sbjct: 202 GVCSVVDDQAVCDCSRTGFRGKDCSQGKE 230
Score = 31.4 bits (70), Expect = 0.34
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 41 PPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPEC 85
E PC+ +PC CRD C C +C E
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 31.0 bits (69), Expect = 0.41
Identities = 8/44 (18%), Positives = 8/44 (18%)
Query: 42 PEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPEC 85
C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 30.8 bits (70), Expect = 0.18
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
+ C SPC C+D S C CLP + G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
C C C +G+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.9 bits (68), Expect = 0.19
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
++ C + QC + +GS C C YI A C +E C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD--------------TDE-CSV 49
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSC 139
G+ C+ + C C +GF +C
Sbjct: 50 ---GNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 26.8 bits (60), Expect = 2.2
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 14/65 (21%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
C C G+ C + C C+++ G C+C
Sbjct: 27 RCECPFGYILAGNE-C-------------VDTDECSVGNPCGNGTCKNVIGGFECTCEEG 72
Query: 74 YIGAP 78
+ P
Sbjct: 73 FEPGP 77
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.6 bits (71), Expect = 0.19
Identities = 29/169 (17%), Positives = 43/169 (25%), Gaps = 17/169 (10%)
Query: 48 CIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP 107
+ + C C + G C C P ++G C C K R
Sbjct: 200 HLCTACMNNGVCHEDTGE--CICPPGFMG--RTC------EKACELHTFGRTCKERCSGQ 249
Query: 108 GSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVC-R 166
C C + C C G+ G + + P C C +C R
Sbjct: 250 EGCKSYVFCLPDPYG--CSCATGWKGLQCN----EACHPGFYGPDCKLRCSCNNGEMCDR 303
Query: 167 DNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCG 215
C+C P + G + N K + G
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASG 352
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.7 bits (71), Expect = 0.22
Identities = 18/164 (10%), Positives = 33/164 (20%), Gaps = 7/164 (4%)
Query: 48 CIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCP 107
P + + P C+ C+ + P
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDP 222
Query: 108 GSCGQGAQCRVINHSPVCY--CPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVC 165
C CR C CP + C + + V
Sbjct: 223 TKC---VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
Query: 166 RDNVCV--CLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKN 207
+N C+ C Y + + C+ + +
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Score = 30.6 bits (68), Expect = 0.53
Identities = 24/168 (14%), Positives = 41/168 (24%), Gaps = 8/168 (4%)
Query: 11 HNPSCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSC-S 69
+ P+ F P + C + C +
Sbjct: 168 NCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVA 227
Query: 70 CLPNYIGAPPNCRPECVQNTECPYDKACINE----KCRDPCPGSCGQGAQCRVI-NHSPV 124
C Y+ C C D C+N C S QG VI N+ +
Sbjct: 228 CRNFYLD--GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI 285
Query: 125 CYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVC 172
CP G+ ++ + + P + + + C
Sbjct: 286 PECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
Score = 27.1 bits (59), Expect = 5.8
Identities = 22/171 (12%), Positives = 31/171 (18%), Gaps = 9/171 (5%)
Query: 44 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCR 103
+ I S + + C C C
Sbjct: 118 RIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDIC--PGTAKGKTNCPATVIN 175
Query: 104 DPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNA 163
C + C C C+ + + P+ C
Sbjct: 176 GQFVERCWTHSHC---QKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN-- 230
Query: 164 VCRDNVCV--CLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPG 212
D CV C P YY C K R C +
Sbjct: 231 FYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHN 281
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.4 bits (69), Expect = 0.27
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
++ C SPC C++ GS C C + C++ + + I+ +C
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 105 PCPGSCGQGAQCRVINH---------SPVCYCPDGFIGDAFSSC 139
G+ + C + C G+ + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 30.9 bits (70), Expect = 0.29
Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 11/90 (12%)
Query: 31 RIPPPPPQESPP---EYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQ 87
R Q P + + + ++ C C P +
Sbjct: 26 RWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTP--------LSKDERA 77
Query: 88 NTECPYDKACINEKCRDPCPGSCGQGAQCR 117
E + C+N C C G C
Sbjct: 78 QGEIACGEDCLNRLLMIECSSRCPNGDYCS 107
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.0 bits (69), Expect = 0.34
Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 12/183 (6%)
Query: 38 QESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKAC 97
PP+ P C + + P C + C
Sbjct: 141 GNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNEC 200
Query: 98 INEKCRDPC--PGSCGQGAQCRVINHSPVCY--CPDGFIGDAFSSCYPKPIEPIQAPEQQ 153
+ +C C P + CR ++ VC CP C +
Sbjct: 201 CHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRD----FCANIL 256
Query: 154 ADPCICAPNAVCRDNVCV--CLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVP 211
+ + V D C+ C + + CI K K
Sbjct: 257 SAESSDSEGFVIHDGECMQECPSGFIRN--GSQSMYCIPCEGPCPKVCEEEKKTKTIDSV 314
Query: 212 GTC 214
+
Sbjct: 315 TSA 317
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.7 bits (69), Expect = 0.35
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSC-LPNYIGAPPNCRPEC 85
C C C SC C + ++ G P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 30.4 bits (68), Expect = 0.40
Identities = 19/112 (16%), Positives = 26/112 (23%), Gaps = 10/112 (8%)
Query: 68 CSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYC 127
C C YIG C T+ + +D C C C C
Sbjct: 109 CRCDTGYIG------KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----VCGQCLC 158
Query: 128 PDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGD 179
+ + I C +C C C P + G
Sbjct: 159 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 210
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.8 bits (67), Expect = 0.48
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 44 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTEC 91
Y C C +C + G+ +CSC P + G PEC +
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 30.4 bits (68), Expect = 0.53
Identities = 20/118 (16%), Positives = 26/118 (22%), Gaps = 6/118 (5%)
Query: 17 CKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
CK + P P P I G C C + G
Sbjct: 360 CKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAG--QCRCKLHVEG 417
Query: 77 APPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
+ E + C + C G+ G C CYC G
Sbjct: 418 ERCDVCKEGFYDLSAEDPYGC--KSCACNPLGTIPGGNPCDSETG--YCYCKRLVTGQ 471
Score = 28.9 bits (64), Expect = 1.7
Identities = 23/184 (12%), Positives = 40/184 (21%), Gaps = 14/184 (7%)
Query: 17 CKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
C + P ++ + + +++G +C N +G
Sbjct: 295 CMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMG 354
Query: 77 ------APPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDG 130
P + + + C + G C V + C C
Sbjct: 355 RNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 131 FIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDN--------VCVCLPDYYGDGYT 182
G+ C + C C P C C G
Sbjct: 415 VEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD 474
Query: 183 VCRP 186
C P
Sbjct: 475 QCLP 478
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 30.2 bits (67), Expect = 0.64
Identities = 28/175 (16%), Positives = 41/175 (23%), Gaps = 43/175 (24%)
Query: 45 VNPCIPSPCGPY-SQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCR 103
+ C + + C N +C C N G P+C KC+
Sbjct: 291 IKVRGRCKCNLHATVCVYDNSKLTCECEHNTTG--PDC------------------GKCK 330
Query: 104 DPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNA 163
G I C + C + C
Sbjct: 331 KNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDN-------------ELLHCQNGG 377
Query: 164 VCRDNV-CVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCGEG 217
C +NV C+C Y G R C +C + + GT
Sbjct: 378 TCHNNVRCLCPAAYTGILCEKLR--------CEEAGSCGSDSGQGAPPHGTHHHH 424
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.5 bits (64), Expect = 0.82
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 15/79 (18%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
SC C++G+ G C G C + G CSC P
Sbjct: 36 SCDCRSGWEGRFCQREVSF-------------LNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 74 YIGAPPNCRPECVQNTECP 92
Y + +C + P
Sbjct: 83 YKLG--DDLLQCHPAVKFP 99
Score = 27.8 bits (62), Expect = 1.5
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 17/90 (18%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRD 104
+ S C + C D GS SC C + G + + ++
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG---------------RFCQREVSFLNCS 58
Query: 105 PCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
G C C C C G+
Sbjct: 59 LDNGGCTH--YCLEEVGWRRCSCAPGYKLG 86
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 28.2 bits (62), Expect = 0.96
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 17/88 (19%)
Query: 46 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE-----------CVQNTECPY 93
+ C+ C S C R ++ C CL NY C C + +C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 94 DKACINEK-----CRDPCPGSCGQGAQC 116
+ + N K C P G C
Sbjct: 65 EDSGSNGKKITCECTKPDSYPLFDGIFC 92
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 28.1 bits (62), Expect = 0.96
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 46 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE----------CVQNTEC-PY 93
+ CI + + C R ++G+ CL + C P C EC
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 94 DKACINEKCRDPCPGSCGQGAQCRVIN 120
DK + KC +G C +
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFCSSSS 97
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.2 bits (65), Expect = 1.2
Identities = 22/125 (17%), Positives = 30/125 (24%), Gaps = 32/125 (25%)
Query: 15 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
+ T +I P P E P+
Sbjct: 352 LSSSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQ---------------------- 389
Query: 75 IGAPPNCRPECVQNTECPYDKACIN-----EKCRDP-CPGSCGQGAQCRVINHSPVCYCP 128
C C P K C + + CR C +C G C N C C
Sbjct: 390 -TLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK---CLCK 445
Query: 129 DGFIG 133
G++G
Sbjct: 446 KGYLG 450
Score = 28.0 bits (62), Expect = 3.0
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 6/85 (7%)
Query: 135 AFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPDYYGDGYTV--CRPECIRNS 192
++P Q +C C C P + GD C P C
Sbjct: 376 LMPEECRATVQPAQ-TLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGG 434
Query: 193 DCANNKACIRNKCKNPCVPGTCGEG 217
C C+ CK + C +
Sbjct: 435 VCVRPNKCL---CKKGYLGPQCEQV 456
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.4 bits (66), Expect = 1.2
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 16/131 (12%)
Query: 52 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCR--------PECVQNTECPYDKACINEKCR 103
PC ++ + S CR C + C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 104 DPCPGSCGQG---AQCRVINHSPVCYCPDGF-----IGDAFSSCYPKPIEPIQAPEQQAD 155
+ G G R I + F G + C +P+ ++ E + +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 156 PCICAPNAVCR 166
+ R
Sbjct: 155 RELLESYIDGR 165
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.1 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 19/56 (33%)
Query: 33 PPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQN 88
PP PP+ P P G Q G P GAPP P+ V N
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDN 443
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 27.7 bits (61), Expect = 1.2
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 46 NPCIPSPCGPYSQC-RDINGSPSCSCLPNYIGAPPNCRPE-----------CVQNTEC-P 92
+ CI + + C R ++G+ CL + C P C EC
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 93 YDKACINEKCRDPCPGSCGQGAQC 116
DK I KC +G C
Sbjct: 65 NDKNEIVCKCTKEGSEPLFEGVFC 88
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 28.1 bits (63), Expect = 1.3
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 77 APPNCRPECVQNTECPYDKAC-------INEKCRDPCPGSCGQGAQCRVINHSPVCYCPD 129
NC +C + Y C +E R + N C CP+
Sbjct: 8 FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPE 67
Query: 130 GFIGDAFSSC 139
G+I D C
Sbjct: 68 GYILDDGFIC 77
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 29.0 bits (65), Expect = 1.4
Identities = 38/195 (19%), Positives = 51/195 (26%), Gaps = 49/195 (25%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
C C GF G C C C C C P
Sbjct: 166 ICECPDGFHGP---HCE---------------KALCTPRCMNGGLCVTPG---FCICPPG 204
Query: 74 YIGA---PPNCRPECVQNTECPYDKACI------NEKC-RDPCPGSCGQGAQCRVINHSP 123
+ G NC C C Y CI E+C CP C G +C
Sbjct: 205 FYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKC---IGKS 261
Query: 124 VCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRD-NVCVCLPDYYGDGYT 182
C C G+ GD C + C + C + N C C ++G
Sbjct: 262 KCKCSKGYQGD---LC-----------SKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
Query: 183 VCRPECIRNSDCANN 197
+ + ++
Sbjct: 308 KRYEASLIGTKHHHH 322
Score = 26.7 bits (59), Expect = 7.8
Identities = 39/201 (19%), Positives = 49/201 (24%), Gaps = 51/201 (25%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
T + C P C C + C C
Sbjct: 134 LKTPQNAIFFK---TCQ---------------QAECPGGCRNGGFCNERR---ICECPDG 172
Query: 74 YIGA---PPNCRPECVQNTECPYDKACINEK-------CRDPCPGSCGQGAQCRVINHSP 123
+ G C P C+ C CI + C +C G C +
Sbjct: 173 FHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTC---FYPG 229
Query: 124 VCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRD-NVCVCLPDYYGD--G 180
C CP G G+ C E P C C + C C Y GD
Sbjct: 230 KCICPPGLEGE---QC-----------EISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCS 275
Query: 181 YTVCRPECIRNSDCANNKACI 201
VC P C + C C
Sbjct: 276 KPVCEPGCGAHGTCHEPNKCQ 296
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 156 PCICAPNAVCRDNVCVCLPDYYGDGYTVCRPECIR---NSDCANNKACIRNKCKNPCVPG 212
P C+ + C VC C Y T + + K V
Sbjct: 195 PSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGT 254
Query: 213 TCGEGASS 220
CG
Sbjct: 255 GCGTLNDG 262
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate,
lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster}
PDB: 3pc2_A* 3pc4_A*
Length = 527
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 29 CSRIPPPPPQESPPEYVNPCIPSPC 53
+P P P E P ++++P PS C
Sbjct: 3 PEFMPQPKPYERPADFIDPGKPSKC 27
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 28.2 bits (63), Expect = 1.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 44 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 81
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
Score = 26.3 bits (58), Expect = 6.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 106 CPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
SC +C ++ C C GF G
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSGL 151
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.1 bits (63), Expect = 1.9
Identities = 24/167 (14%), Positives = 42/167 (25%), Gaps = 34/167 (20%)
Query: 48 CIPSPCGPYSQCRDINGSPSCSCLPNYIGA----PPNCRPECVQNTECPYDKACI----- 98
+ G + +C Y G R + + C +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGW 58
Query: 99 -NEKCRDP--CPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQAD 155
+C G + C++ C C G+ G C P P
Sbjct: 59 MGPECNRAICRQGCSPKHGSCKLPGD---CRCQYGWQGLYCDKCIPHP------------ 103
Query: 156 PCICAPNAVCRD-NVCVCLPDYYGDGYTVCRPECIRNSDCANNKACI 201
+ +C + C+C ++ G C + C N C
Sbjct: 104 ---GCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCS 147
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 28.5 bits (64), Expect = 2.2
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 8 VINHNPSCTCKAGFTGD--PRVFCSRI 32
V+ N + K G+ G P +
Sbjct: 9 VVCDNGTGFVKCGYAGSNFPEHIFPAL 35
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/169 (14%), Positives = 34/169 (20%), Gaps = 28/169 (16%)
Query: 15 CTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
C C G C + C + C C+ Y
Sbjct: 27 CMCNEGLVHLSENTCEEXNECXXETLGX----ACGEFGQCIENPDPAQVNMYXCGCIEGY 82
Query: 75 IGAPPNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVCYCPDGFIGD 134
C + Q C CI E S C C G + +
Sbjct: 83 TLXEDTCVLDVCQYXNCGESGECIVE---------------YLSEIQSAGCSCAIGXVPN 127
Query: 135 AFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNV----CVCLPDYYGD 179
E N VC + C C+ + D
Sbjct: 128 PEDEXXCTXTG-----ETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 26.9 bits (58), Expect = 4.9
Identities = 18/158 (11%), Positives = 34/158 (21%), Gaps = 11/158 (6%)
Query: 50 PSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCRDPCPGS 109
Q ++ C C + N C + EC + C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENT---CEEXNECXXETLGXACGEFGQCIEN 65
Query: 110 CGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNV 169
+ C C +G+ + ++ CI + +
Sbjct: 66 P-----DPAQVNMYXCGCIEGYTLXEDTCV---LDVCQYXNCGESGECIVEYLSEIQSAG 117
Query: 170 CVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKN 207
C C + + C C N
Sbjct: 118 CSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXN 155
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.9 bits (62), Expect = 2.9
Identities = 9/85 (10%), Positives = 13/85 (15%), Gaps = 7/85 (8%)
Query: 34 PPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRP--ECVQNTEC 91
E V +C C+ + C V E
Sbjct: 12 ASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH-----RCDGVTNTVTPEEV 66
Query: 92 PYDKACINEKCRDPCPGSCGQGAQC 116
R+ C
Sbjct: 67 INTTGEGIFDIRENANECESYLDVC 91
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 8 VINHNPSCTCKAGFTGD--PRVFCSRI 32
++ N S KAGF GD PR I
Sbjct: 8 LVCDNGSGLVKAGFAGDDAPRAVFPSI 34
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 28.3 bits (62), Expect = 3.2
Identities = 26/182 (14%), Positives = 40/182 (21%), Gaps = 5/182 (2%)
Query: 48 CIPSPCGPYS-QCRD---INGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINEKCR 103
C + C P QC D I+GS C + V E P C + +C
Sbjct: 228 CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECI 287
Query: 104 DPCPGSCGQGAQCRVINHSPVCYCPDGFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNA 163
C CR + P+ C D C + E
Sbjct: 288 TL-DKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 346
Query: 164 VCRDNVCVCLPDYYGDGYTVCRPECIRNSDCANNKACIRNKCKNPCVPGTCGEGASSWTT 223
+++ C V + + K +
Sbjct: 347 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 406
Query: 224 GC 225
Sbjct: 407 RK 408
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 28.1 bits (61), Expect = 3.7
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 159 CAPNAVCRDNVCVCLPDYYGDGYT-------VCRPECIRNSDCANNKACIRNKCKNPCVP 211
C+ + C CVC + G + + N + +
Sbjct: 541 CSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCG 600
Query: 212 GTCGEGASSWTTGCTA 227
A ++ GC+
Sbjct: 601 AVASGLALHFSGGCSR 616
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 27.5 bits (61), Expect = 4.2
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 9/98 (9%)
Query: 8 VINHNPSCTCKAGFTGD--PR-VFCSRI--PPPPPQESPPEYVNPCIPSPCGPYSQCRDI 62
+I N + K G+ G+ P VF + I P P + G
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 63 NGSPSCSCLPNYIGAPPNCRPECVQNTECPYDKACINE 100
L +IG + + + P I
Sbjct: 68 ATED----LDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 27.1 bits (60), Expect = 4.5
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 44 YVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPECVQNTECP 92
Y C P C + +C +I + +C+C Y G P+C P
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG------PQCQFVQVDP 160
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 27.3 bits (60), Expect = 6.0
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 8 VINHNPSCTCKAGFTGD--PR-VFCSRIPPPPPQESPPEYV 45
V+ S T G++G P+ + S E +
Sbjct: 26 VVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIF 66
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 24.4 bits (54), Expect = 6.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 81
+ C +PC C+D S C C + G NC
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG--KNC 37
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 26.9 bits (59), Expect = 7.0
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 23 GDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCR 82
D + + P P + C + NG CLP P + +
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS---NGGCQYLCLPAPQINPHSPK 296
Query: 83 PECVQNTECP 92
C CP
Sbjct: 297 FTCA----CP 302
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 26.7 bits (58), Expect = 8.6
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 157 CICAPNAVCRDNVCVCLPDYYGDG 180
C A C N C +
Sbjct: 81 CPAASRPGCHKNTCGLMSTNPITQ 104
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 26.8 bits (58), Expect = 9.6
Identities = 17/166 (10%), Positives = 32/166 (19%), Gaps = 4/166 (2%)
Query: 14 SCTCKAGFTGDPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPN 73
+ C+ +++ EY P C P S +
Sbjct: 463 DFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVC 522
Query: 74 YIGAP-PNCRPECVQNTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPVC---YCPD 129
G NC + D C + + N +P C
Sbjct: 523 QSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEG 582
Query: 130 GFIGDAFSSCYPKPIEPIQAPEQQADPCICAPNAVCRDNVCVCLPD 175
+ + + + D+ C
Sbjct: 583 EKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVP 628
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.499
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,929,083
Number of extensions: 243216
Number of successful extensions: 1981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 532
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)