RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13148
(243 letters)
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 26
Score = 31.2 bits (70), Expect = 0.007
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 82 RPECVQNTECPYDKACINEKCRDP 105
RPECV N++CP ++AC+N+KCRDP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.1 bits (62), Expect = 0.079
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 185 RPECIRNSDCANNKACIRNKCKNP 208
RPEC+ NSDC +N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.057
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 81
+ C +PC C+D S C C + G NC
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG--KNC 37
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.074
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
VN C+ +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 27.7 bits (62), Expect = 0.13
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.33
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 81
+ C SPC +C+D G +C+CL + G NC
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC 34
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.6 bits (59), Expect = 0.34
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.6 bits (59), Expect = 0.38
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNC 81
++ C + QC + +GS C C YI A C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.9 bits (57), Expect = 0.63
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 0.98
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 46 NPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.2 bits (55), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 52 PCGPYSQCRDINGSPSCSCLPNYIGAPPNCRPE 84
C +++CRD C C+ NY G C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 23.3 bits (50), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 159 CAPNAVCRDNV----CVCLPDYYGDGYTVCRPE 187
C+ +A CRD C C+ +Y G+G C E
Sbjct: 9 CSVHAECRDYATGFCCRCVANYTGNGRQ-CVAE 40
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.2 bits (55), Expect = 1.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
+PC CG + C D GS SC C + G
Sbjct: 8 EHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 149
Score = 26.8 bits (58), Expect = 1.9
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 6/102 (5%)
Query: 24 DPRVFCSRIPPPPPQESPPEYVNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAPPNCRP 83
RV + P +E+ EY+ +P + DI + +
Sbjct: 27 GLRVLDASWYSPGTREARKEYLERHVPG-----ASFFDIEECRDKASPYEVMLPSEAGFA 81
Query: 84 ECVQ-NTECPYDKACINEKCRDPCPGSCGQGAQCRVINHSPV 124
+ V + + + RV H V
Sbjct: 82 DYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTV 123
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 1.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 48 CIPSPCGPYSQCRDINGSPSCSCLPNYIG 76
+PC +C + GS C CL Y G
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTG 36
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 25.8 bits (56), Expect = 3.2
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 8 VINHNPSCTCKAGFTGD--PRVFCSRIPPPPPQES 40
++ N S KAGF GD PR I P +
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQG 36
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 23.6 bits (51), Expect = 4.8
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNY 74
N C+ + G C D+ C C +
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGF 31
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 23.3 bits (50), Expect = 5.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 45 VNPCIPSPCGPYSQCRDINGSPSCSCLPNYIGAP 78
VN C+ C + GS C C P++ P
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 22.9 bits (49), Expect = 8.3
Identities = 9/30 (30%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 45 VNPCIPSPCGPYSQCRDIN-GSPSCSCLPN 73
VNPC PC C C C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRT 31
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.8 bits (49), Expect = 9.6
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 51 SPCGPYSQCRDINGSPSCSCLPNYIGAPPNCR 82
+ C ++ G+ C C P+ A
Sbjct: 7 NGGFCSGVCHNLPGTFECICGPDSALAGQIGT 38
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 25.0 bits (54), Expect = 9.7
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 20 GFTGDPRVFCSRI-PPPPPQESPPEY 44
GF + CS + P + P
Sbjct: 276 GFDRNALTDCSDVIPSAVSNNAAPVI 301
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.499
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,534
Number of extensions: 59445
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 199
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)