BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13149
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9C|A Chain A, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
pdb|2B9C|B Chain B, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
Length = 147
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 45 MDALENQLKEARFLAEEADKKYDETA 70
M+ E QLKEA+ +AE+AD+KY+E A
Sbjct: 54 MEIQEIQLKEAKHIAEDADRKYEEVA 79
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 16 EEADKKYDE------VIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDET 69
EEA+K DE VI ++ IQ E QLKEA+ +AE+AD+KY+E
Sbjct: 114 EEAEKAADESERGMKVIESRAQKDEEKMEIQ--------EIQLKEAKHIAEDADRKYEEV 165
Query: 70 A 70
A
Sbjct: 166 A 166
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 16 EEADKKYDE------VIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDET 69
EEA+K DE VI ++ IQ E QLKEA+ +AE+AD+KY+E
Sbjct: 114 EEAEKAADESERGMKVIESRAQKDEEKMEIQ--------EIQLKEAKHIAEDADRKYEEV 165
Query: 70 A 70
A
Sbjct: 166 A 166
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 16 EEADKKYDE------VIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDET 69
EEA+K DE VI ++ IQ E QLKEA+ +AE+AD+KY+E
Sbjct: 107 EEAEKAADESERGMKVIESRAQKDEEKMEIQ--------EIQLKEAKHIAEDADRKYEEV 158
Query: 70 A 70
A
Sbjct: 159 A 159
>pdb|4A7F|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 136
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 45 MDALENQLKEARFLAEEADKKYDETA 70
M+ E QLKEA+ +AE+AD+KY+E A
Sbjct: 44 MEIQEIQLKEAKHIAEDADRKYEEVA 69
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 35 RFFPIQKYFFMDALENQLKEARFLAEEADK----KYDETAGVKG 74
+F+P+++YF+ D+LE+ L + ++EE K +YD V G
Sbjct: 365 KFYPLKQYFYFDSLES-LPSSVTISEETCKPRGCRYDGQIAVFG 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,361,060
Number of Sequences: 62578
Number of extensions: 79101
Number of successful extensions: 182
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)