Query psy13149
Match_columns 89
No_of_seqs 124 out of 290
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:49:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003|consensus 99.6 2.2E-14 4.9E-19 103.7 8.4 81 1-81 13-98 (205)
2 KOG1003|consensus 99.3 1.5E-11 3.2E-16 89.2 7.7 80 1-80 62-153 (205)
3 PF00261 Tropomyosin: Tropomyo 98.9 1.4E-09 3E-14 79.6 3.9 75 6-82 57-131 (237)
4 PF00261 Tropomyosin: Tropomyo 98.8 1.6E-08 3.4E-13 74.1 7.4 80 1-80 94-185 (237)
5 PF12718 Tropomyosin_1: Tropom 97.2 0.0045 9.8E-08 42.6 8.4 79 2-80 45-124 (143)
6 PF12718 Tropomyosin_1: Tropom 95.5 0.051 1.1E-06 37.4 5.7 18 4-21 54-71 (143)
7 PRK10884 SH3 domain-containing 79.7 21 0.00045 26.0 8.4 69 3-71 97-167 (206)
8 COG1382 GimC Prefoldin, chaper 78.8 18 0.00038 24.5 7.4 73 3-75 31-109 (119)
9 PF11471 Sugarporin_N: Maltopo 72.2 11 0.00024 22.4 4.2 30 39-68 28-57 (60)
10 PF04102 SlyX: SlyX; InterPro 68.7 17 0.00038 21.8 4.6 47 35-81 3-49 (69)
11 PRK02119 hypothetical protein; 63.6 29 0.00063 21.2 4.9 44 34-77 7-50 (73)
12 PRK00736 hypothetical protein; 59.5 34 0.00074 20.6 4.7 42 36-77 5-46 (68)
13 TIGR01005 eps_transp_fam exopo 59.4 87 0.0019 26.3 8.5 72 3-75 198-269 (754)
14 TIGR03017 EpsF chain length de 58.3 75 0.0016 24.6 7.5 63 3-65 175-237 (444)
15 COG1579 Zn-ribbon protein, pos 57.9 73 0.0016 23.9 7.1 18 5-22 65-82 (239)
16 PF05384 DegS: Sensor protein 57.1 65 0.0014 22.6 7.5 81 3-83 52-145 (159)
17 PRK04406 hypothetical protein; 56.1 42 0.0009 20.7 4.7 44 34-77 9-52 (75)
18 PRK02793 phi X174 lysis protei 55.2 43 0.00093 20.3 4.7 44 34-77 6-49 (72)
19 KOG3433|consensus 54.7 80 0.0017 23.2 6.6 57 3-61 85-141 (203)
20 PRK00295 hypothetical protein; 51.7 51 0.0011 19.8 4.7 42 35-76 4-45 (68)
21 PF12126 DUF3583: Protein of u 49.4 1.2E+02 0.0026 23.9 7.2 48 37-86 43-90 (324)
22 PRK04325 hypothetical protein; 48.3 62 0.0013 19.7 4.7 42 35-76 8-49 (74)
23 TIGR03007 pepcterm_ChnLen poly 44.5 1.6E+02 0.0034 23.3 8.5 72 3-75 165-236 (498)
24 PRK09039 hypothetical protein; 42.5 1.6E+02 0.0035 22.8 8.3 41 36-76 144-184 (343)
25 PF15456 Uds1: Up-regulated Du 41.8 1.1E+02 0.0023 20.6 7.7 24 4-28 34-57 (124)
26 COG4942 Membrane-bound metallo 41.6 1.9E+02 0.0042 23.5 7.8 43 35-77 65-107 (420)
27 PF00846 Hanta_nucleocap: Hant 39.7 98 0.0021 25.2 5.6 54 2-55 12-68 (428)
28 PRK00846 hypothetical protein; 39.5 91 0.002 19.4 4.4 45 34-78 11-55 (77)
29 TIGR01010 BexC_CtrB_KpsE polys 37.2 1.4E+02 0.003 22.7 6.0 26 3-28 174-199 (362)
30 PF15290 Syntaphilin: Golgi-lo 36.7 2.1E+02 0.0045 22.4 8.3 47 2-52 71-117 (305)
31 PF15188 CCDC-167: Coiled-coil 36.1 86 0.0019 20.0 3.9 22 2-23 8-29 (85)
32 KOG3584|consensus 35.9 63 0.0014 25.4 3.9 39 20-58 297-341 (348)
33 PF09730 BicD: Microtubule-ass 35.7 3E+02 0.0065 24.0 8.3 49 35-83 411-459 (717)
34 PF05276 SH3BP5: SH3 domain-bi 34.8 1.9E+02 0.0042 21.6 8.8 79 1-79 23-106 (239)
35 PF05529 Bap31: B-cell recepto 34.3 1.6E+02 0.0034 20.5 5.5 13 42-54 160-172 (192)
36 PF05911 DUF869: Plant protein 33.3 2.8E+02 0.0061 24.3 7.7 34 43-76 680-713 (769)
37 PF05546 She9_MDM33: She9 / Md 32.5 2.1E+02 0.0045 21.2 7.7 30 2-31 42-71 (207)
38 PRK09841 cryptic autophosphory 32.0 1.8E+02 0.004 24.6 6.4 26 3-28 271-296 (726)
39 PRK04778 septation ring format 31.3 2.3E+02 0.0049 23.4 6.6 50 37-86 391-440 (569)
40 PRK14472 F0F1 ATP synthase sub 29.8 1.8E+02 0.0039 20.0 5.1 37 41-77 47-83 (175)
41 COG2900 SlyX Uncharacterized p 29.2 1.5E+02 0.0032 18.4 4.4 42 35-76 7-48 (72)
42 PRK13729 conjugal transfer pil 28.7 1.6E+02 0.0034 24.4 5.3 19 7-25 70-88 (475)
43 PRK04863 mukB cell division pr 28.6 3.9E+02 0.0084 25.3 8.1 35 42-76 389-423 (1486)
44 PF02996 Prefoldin: Prefoldin 28.4 1.6E+02 0.0034 18.5 4.8 43 40-82 74-116 (120)
45 CHL00118 atpG ATP synthase CF0 28.2 1.9E+02 0.0042 19.5 5.1 36 41-76 51-86 (156)
46 PRK11637 AmiB activator; Provi 27.5 3E+02 0.0066 21.5 8.4 11 6-16 54-64 (428)
47 PRK14475 F0F1 ATP synthase sub 27.4 2.1E+02 0.0044 19.6 5.1 36 41-76 39-74 (167)
48 PRK07353 F0F1 ATP synthase sub 27.0 1.8E+02 0.004 18.9 5.1 36 41-76 34-69 (140)
49 PF05546 She9_MDM33: She9 / Md 26.7 2.7E+02 0.0058 20.6 8.0 70 4-73 7-76 (207)
50 PRK13729 conjugal transfer pil 25.8 1.8E+02 0.0038 24.2 5.0 18 59-76 99-116 (475)
51 PF08826 DMPK_coil: DMPK coile 25.6 1.6E+02 0.0034 17.6 5.4 21 35-55 38-58 (61)
52 PRK11519 tyrosine kinase; Prov 25.2 2.9E+02 0.0064 23.4 6.4 26 3-28 271-296 (719)
53 KOG2077|consensus 24.9 1.9E+02 0.004 25.2 5.1 58 1-58 359-428 (832)
54 PRK13455 F0F1 ATP synthase sub 24.8 2.4E+02 0.0052 19.5 5.1 35 41-75 56-90 (184)
55 PF07106 TBPIP: Tat binding pr 23.4 2.5E+02 0.0054 19.1 5.0 21 36-56 116-136 (169)
56 PF05120 GvpG: Gas vesicle pro 23.2 1.7E+02 0.0036 18.3 3.6 35 43-77 35-69 (79)
57 PRK14471 F0F1 ATP synthase sub 22.8 2.5E+02 0.0054 18.9 5.1 34 42-75 38-71 (164)
58 COG2433 Uncharacterized conser 22.5 5.1E+02 0.011 22.4 8.4 28 40-67 478-505 (652)
59 TIGR01144 ATP_synt_b ATP synth 22.1 2.4E+02 0.0052 18.5 5.1 34 42-75 25-58 (147)
60 KOG0976|consensus 21.6 6E+02 0.013 23.3 7.6 28 6-33 337-364 (1265)
61 smart00574 POX domain associat 21.4 2.3E+02 0.0049 19.8 4.3 36 45-80 70-107 (140)
62 PRK13460 F0F1 ATP synthase sub 20.1 3E+02 0.0065 18.8 5.1 36 41-76 45-80 (173)
No 1
>KOG1003|consensus
Probab=99.55 E-value=2.2e-14 Score=103.71 Aligned_cols=81 Identities=30% Similarity=0.236 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHH-----hhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVI-----FVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~-----~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
|.+++.+|+.++.++..+..|+.++. ..+++++++||+..++++|..++.||++|+++++++|+||++|+++|+|
T Consensus 13 i~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~i 92 (205)
T KOG1003|consen 13 IQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVI 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888877777777777766 4578999999999999999999999999999999999999999999999
Q ss_pred hcccch
Q psy13149 76 FSPIRA 81 (89)
Q Consensus 76 le~~~~ 81 (89)
+++.+-
T Consensus 93 iE~dLE 98 (205)
T KOG1003|consen 93 IEGELE 98 (205)
T ss_pred HHhHHH
Confidence 998763
No 2
>KOG1003|consensus
Probab=99.28 E-value=1.5e-11 Score=89.16 Aligned_cols=80 Identities=28% Similarity=0.211 Sum_probs=74.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh------------hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRE------------RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDE 68 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~------------~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde 68 (89)
|..++.||++|++++++||+||++|++++++++ .+|++..+++.++.+.++|+++..+.+.+.++.|.
T Consensus 62 ~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 62 MEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 467899999999999999999999999999876 17999999999999999999999999999999999
Q ss_pred HHHHHhhhcccc
Q psy13149 69 TAGVKGLFSPIR 80 (89)
Q Consensus 69 ~arkL~ile~~~ 80 (89)
|..+|+.+++-+
T Consensus 142 ~e~~ik~ltdKL 153 (205)
T KOG1003|consen 142 YEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
No 3
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.89 E-value=1.4e-09 Score=79.62 Aligned_cols=75 Identities=31% Similarity=0.259 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchh
Q psy13149 6 NQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAV 82 (89)
Q Consensus 6 ~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~ 82 (89)
..|..+..++.++.+.+++ ..++++++++|...++++|..|+.+|+.++.+++++++||++++++|.++++.+..
T Consensus 57 erL~~~~~kL~~~e~~~de--~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~ 131 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADE--SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELER 131 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666 55677889999999999999999999999999999999999999999999987754
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=1.6e-08 Score=74.12 Aligned_cols=80 Identities=29% Similarity=0.198 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh------------hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRE------------RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDE 68 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~------------~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde 68 (89)
|..||.+|+.|+..+++++++|+++++++...+ .++++..+++++..+.++|++++...+.++.+.+.
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~ 173 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDE 173 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 457899999999999999999999999987654 27899999999999999999999999999999999
Q ss_pred HHHHHhhhcccc
Q psy13149 69 TAGVKGLFSPIR 80 (89)
Q Consensus 69 ~arkL~ile~~~ 80 (89)
|..+|..|+.-+
T Consensus 174 ~e~~i~~L~~~l 185 (237)
T PF00261_consen 174 YEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987644
No 5
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.17 E-value=0.0045 Score=42.64 Aligned_cols=79 Identities=23% Similarity=0.081 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh-hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVIFVCGNRE-RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIR 80 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~-~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~ 80 (89)
..+|.+|+.+...+.++..++++.....+..+ +..|+..+|++++..+..|+.+.....++|.+-+.+.|+...++.-+
T Consensus 45 ~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 46778888888888888888877554443333 56788899999999999999999999999999999999999887643
No 6
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.49 E-value=0.051 Score=37.40 Aligned_cols=18 Identities=56% Similarity=0.682 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy13149 4 LENQLKEARFLAEEADKK 21 (89)
Q Consensus 4 lE~~L~~a~~~~eeA~~k 21 (89)
++.+|..++..+++++..
T Consensus 54 ~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 54 LEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 444444444444444443
No 7
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.72 E-value=21 Score=25.98 Aligned_cols=69 Identities=19% Similarity=0.084 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh--hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRE--RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAG 71 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~--~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~ar 71 (89)
.++.++..++..+.+++..++.....+..+. ..+.+..++.+-..|..+|..++...+....+.+...+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777665333332222 23333445566666666666666555555555554443
No 8
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.77 E-value=18 Score=24.54 Aligned_cols=73 Identities=22% Similarity=0.111 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHH--hhhhh----hhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVI--FVCGN----RERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~--~k~~~----~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
.+|.+|+++...+++-++--+..- +..|- +..+.=...++++++.++..++.++-..+....+++++...|.-
T Consensus 31 ~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 31 QLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776666666655544421 22221 11233344678999999999999999999999999998887754
No 9
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=72.22 E-value=11 Score=22.38 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy13149 39 IQKYFFMDALENQLKEARFLAEEADKKYDE 68 (89)
Q Consensus 39 ~~~Ee~l~~le~qLKea~~~aeead~Kyde 68 (89)
.+.|.||..||..|..++.-+..+..+...
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988888877665544
No 10
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.67 E-value=17 Score=21.76 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=30.6
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccch
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRA 81 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~ 81 (89)
+.|...+|.++-.++..+.++....-.-.+..+...+.+..+..-+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777766655443
No 11
>PRK02119 hypothetical protein; Provisional
Probab=63.63 E-value=29 Score=21.21 Aligned_cols=44 Identities=14% Similarity=-0.099 Sum_probs=33.4
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
.+.|...+|.++-.++..+.++....-.-.+..+...+++..+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888887777777777777777777663
No 12
>PRK00736 hypothetical protein; Provisional
Probab=59.49 E-value=34 Score=20.56 Aligned_cols=42 Identities=10% Similarity=-0.086 Sum_probs=26.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 36 FFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
.|...+|.++-.++..+.++....-.-.+..+...+++..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666553
No 13
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=59.35 E-value=87 Score=26.32 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
-++.++...+..+..++.++...-++-+....++ ....+.+|..+..+|..++.....+..+|+.+...+..
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~-~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNN-ATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777777788887777776554433333222 22235889999999999988888888888888877653
No 14
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.28 E-value=75 Score=24.65 Aligned_cols=63 Identities=17% Similarity=-0.021 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKK 65 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~K 65 (89)
-++.++...+..+..++.++...-++-++............++..+..++..++....++..+
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877766554444332222222356667777776666554444433
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.86 E-value=73 Score=23.91 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy13149 5 ENQLKEARFLAEEADKKY 22 (89)
Q Consensus 5 E~~L~~a~~~~eeA~~k~ 22 (89)
+..+..+..+...+..+.
T Consensus 65 e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 65 ESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 16
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.13 E-value=65 Score=22.63 Aligned_cols=81 Identities=21% Similarity=0.077 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh-------------hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRE-------------RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDET 69 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~-------------~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~ 69 (89)
.|+..-..|+.++-+.++-|+-.+..-.... ..++-..+-.+-+.|+..|+.+..+.+.|+.--..+
T Consensus 52 ~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 52 KLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666655543332211100 133444556677778888888888888887766666
Q ss_pred HHHHhhhcccchhh
Q psy13149 70 AGVKGLFSPIRAVV 83 (89)
Q Consensus 70 arkL~ile~~~~~~ 83 (89)
.=-|..|++.+..|
T Consensus 132 ~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 132 GVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHhhHHHH
Confidence 66666666666554
No 17
>PRK04406 hypothetical protein; Provisional
Probab=56.05 E-value=42 Score=20.66 Aligned_cols=44 Identities=5% Similarity=-0.191 Sum_probs=32.9
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
++.|...+|.++-.++..+.++....-...+..+...++|..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888777777777777777777777663
No 18
>PRK02793 phi X174 lysis protein; Provisional
Probab=55.24 E-value=43 Score=20.34 Aligned_cols=44 Identities=7% Similarity=-0.085 Sum_probs=31.2
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
.+.|...+|.++-.++..+.++....-...+..+...+++..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777666666777777766663
No 19
>KOG3433|consensus
Probab=54.69 E-value=80 Score=23.23 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEE 61 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aee 61 (89)
.|+.+|....++...-....+- ++.+.-..|+|...+..++..+...++.++.-...
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en--~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIEN--RKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555554443 45555556777766666666666666655554443
No 20
>PRK00295 hypothetical protein; Provisional
Probab=51.65 E-value=51 Score=19.77 Aligned_cols=42 Identities=2% Similarity=-0.161 Sum_probs=25.1
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+.|+..+|.++-.++..+.++....-.-.+..+...+++..+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665555555556666655555
No 21
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=49.39 E-value=1.2e+02 Score=23.86 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchhhccc
Q psy13149 37 FPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAVVRLP 86 (89)
Q Consensus 37 r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~~~~~ 86 (89)
|...+=+-+...+..| ++.....+.+-|++++++|.-|+.++-.+|..
T Consensus 43 rVrq~V~hVqaqEreL--Le~v~~rYqR~y~ema~~L~~LeavLqRir~G 90 (324)
T PF12126_consen 43 RVRQVVAHVQAQEREL--LEAVEARYQRDYEEMAGQLGRLEAVLQRIRTG 90 (324)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 3334434444455555 55666778889999999999999988777653
No 22
>PRK04325 hypothetical protein; Provisional
Probab=48.28 E-value=62 Score=19.73 Aligned_cols=42 Identities=7% Similarity=-0.071 Sum_probs=26.7
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+.|+..+|.++-.++..+.++....-.-.+..+...++|..+
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666555
No 23
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.46 E-value=1.6e+02 Score=23.31 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
.++.++..++..+.+++.++...-.+-+....++ ......++..+..++..++..-..+..+++.+..++..
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQ-EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677888888888888888877543322221111 12345667777777777776666677777777666654
No 24
>PRK09039 hypothetical protein; Validated
Probab=42.45 E-value=1.6e+02 Score=22.82 Aligned_cols=41 Identities=15% Similarity=-0.012 Sum_probs=23.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 36 FFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+.+..+..++..++..|..++....++..+.+.+..+|...
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666665555443
No 25
>PF15456 Uds1: Up-regulated During Septation
Probab=41.79 E-value=1.1e+02 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhh
Q psy13149 4 LENQLKEARFLAEEADKKYDEVIFV 28 (89)
Q Consensus 4 lE~~L~~a~~~~eeA~~k~eEv~~k 28 (89)
|..+++-.+.++. ...|+-+++..
T Consensus 34 L~~R~~~lr~kl~-le~k~RdAa~s 57 (124)
T PF15456_consen 34 LDSRLEYLRRKLA-LESKIRDAAHS 57 (124)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444 44444444433
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.64 E-value=1.9e+02 Score=23.53 Aligned_cols=43 Identities=14% Similarity=-0.059 Sum_probs=23.4
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
+......+..+..++.+|......-.+.+++.+.....|..++
T Consensus 65 ~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 65 EKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3344455556666666666555555555555555555554443
No 27
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=39.73 E-value=98 Score=25.22 Aligned_cols=54 Identities=22% Similarity=0.151 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHH---hhhhhhhhhccccchHHHHHHHHHHHHHH
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVI---FVCGNRERRFFPIQKYFFMDALENQLKEA 55 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~---~k~~~~~~e~r~~~~Ee~l~~le~qLKea 55 (89)
...|.||-.|++++.+|.+.|+--- .+.+...|..-...++.++..+..+|..+
T Consensus 12 ~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 12 TQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888876422 12233334444456677888888888653
No 28
>PRK00846 hypothetical protein; Provisional
Probab=39.50 E-value=91 Score=19.44 Aligned_cols=45 Identities=11% Similarity=-0.103 Sum_probs=29.8
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSP 78 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~ 78 (89)
++.|+..+|.++-.++..+.++....-...+..+...++|..+.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777766666666666777766665543
No 29
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.21 E-value=1.4e+02 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFV 28 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k 28 (89)
-++.++..++..+..|+.++.+.-.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777777665544
No 30
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.66 E-value=2.1e+02 Score=22.41 Aligned_cols=47 Identities=19% Similarity=0.071 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHH
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQL 52 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qL 52 (89)
..|-..|+++..++.+-+...+|.-.++++-. -.|-||+++-+|.||
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQL 117 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34556777777777777777777666664321 124567777777764
No 31
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.13 E-value=86 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q psy13149 2 DALENQLKEARFLAEEADKKYD 23 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~e 23 (89)
+-+|+.+......++..+.++-
T Consensus 8 d~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666666666555544
No 32
>KOG3584|consensus
Probab=35.88 E-value=63 Score=25.45 Aligned_cols=39 Identities=23% Similarity=0.050 Sum_probs=23.8
Q ss_pred hhhhhHHhhhhh--hh----hhccccchHHHHHHHHHHHHHHHHH
Q psy13149 20 KKYDEVIFVCGN--RE----RRFFPIQKYFFMDALENQLKEARFL 58 (89)
Q Consensus 20 ~k~eEv~~k~~~--~~----~e~r~~~~Ee~l~~le~qLKea~~~ 58 (89)
-|.-|++|+.-+ ++ +|||...+|.+=+.|-..||.++-.
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 344455554432 22 5788777777777777777776643
No 33
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.70 E-value=3e+02 Score=23.99 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=40.9
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchhh
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAVV 83 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~~ 83 (89)
+..+..+.+++..|+..|+.+...+.++.....-+...|..+.+.+|.+
T Consensus 411 ek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqL 459 (717)
T PF09730_consen 411 EKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQL 459 (717)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455779999999999999999999999999999999888887753
No 34
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=34.82 E-value=1.9e+02 Score=21.56 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHH----HHHHHHhhhhhHHhhhhhhhhhccccch-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 1 MDALENQLKEARF----LAEEADKKYDEVIFVCGNRERRFFPIQK-YFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 1 i~~lE~~L~~a~~----~~eeA~~k~eEv~~k~~~~~~e~r~~~~-Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
|..||..|+.|.. .+.+...++..++.++|.-...+|..-. -............|-..-+.|..-+......+.+
T Consensus 23 IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~l 102 (239)
T PF05276_consen 23 INRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVAL 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888765 6788889999999998754433332211 1111222333333444444444445555555555
Q ss_pred hccc
Q psy13149 76 FSPI 79 (89)
Q Consensus 76 le~~ 79 (89)
++..
T Consensus 103 aEq~ 106 (239)
T PF05276_consen 103 AEQS 106 (239)
T ss_pred HHHH
Confidence 5443
No 35
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.26 E-value=1.6e+02 Score=20.47 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy13149 42 YFFMDALENQLKE 54 (89)
Q Consensus 42 Ee~l~~le~qLKe 54 (89)
.+++..+..+|+.
T Consensus 160 ~~ei~~lk~el~~ 172 (192)
T PF05529_consen 160 SEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 36
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.32 E-value=2.8e+02 Score=24.29 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 43 FFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 43 e~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
.++..|+..|..-+...++...|+.+...+|.-.
T Consensus 680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 680 SKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 3444445555555555555566666665555443
No 37
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=32.52 E-value=2.1e+02 Score=21.18 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVIFVCGN 31 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~ 31 (89)
..+|..|..++..+-+|-..|+.+-.+++-
T Consensus 42 ~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~ 71 (207)
T PF05546_consen 42 EELEDELEAARQEVREAKAAYDDAIQQRSS 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999998877653
No 38
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.04 E-value=1.8e+02 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFV 28 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k 28 (89)
-++.+|...+..+..++.++...-.+
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777665544
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.32 E-value=2.3e+02 Score=23.38 Aligned_cols=50 Identities=16% Similarity=-0.029 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchhhccc
Q psy13149 37 FPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAVVRLP 86 (89)
Q Consensus 37 r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~~~~~ 86 (89)
+....+.....+...+..++....++..+.+.+..+|..+...+.-..||
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lp 440 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLP 440 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555566667777777788888888888888877666554444455
No 40
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.77 E-value=1.8e+02 Score=19.97 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
+++|-..+.+++.+++...+++.....+|..+|....
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~ 83 (175)
T PRK14472 47 LEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666665443
No 41
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=1.5e+02 Score=18.45 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=21.5
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
|.|+..+|.++-.++..+.++.....+--.-.+....+|.-+
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555554444444344444444433
No 42
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.74 E-value=1.6e+02 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q psy13149 7 QLKEARFLAEEADKKYDEV 25 (89)
Q Consensus 7 ~L~~a~~~~eeA~~k~eEv 25 (89)
.|.+.+.++.+.+++++..
T Consensus 70 ALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.59 E-value=3.9e+02 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 42 YFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 42 Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
++++..+..++............+...+...+..+
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333333333333333344433333
No 44
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.39 E-value=1.6e+02 Score=18.53 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchh
Q psy13149 40 QKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAV 82 (89)
Q Consensus 40 ~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~ 82 (89)
..++-++.+...++.++...+........+..++..+...++.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888888888888887766654
No 45
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=28.16 E-value=1.9e+02 Score=19.48 Aligned_cols=36 Identities=8% Similarity=-0.078 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+++|-..+.+++.+++....++.....+|..+|...
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A 86 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILAKANELTKQYEQELSKA 86 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666665544
No 46
>PRK11637 AmiB activator; Provisional
Probab=27.48 E-value=3e+02 Score=21.54 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy13149 6 NQLKEARFLAE 16 (89)
Q Consensus 6 ~~L~~a~~~~e 16 (89)
.+++..+..+.
T Consensus 54 ~qi~~~~~~i~ 64 (428)
T PRK11637 54 QDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 47
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.43 E-value=2.1e+02 Score=19.59 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+++|-..+.+.|.+|+..-.++.....+|..+|...
T Consensus 39 le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 39 LDAYAAKIQAELDEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666556665555555555443
No 48
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.05 E-value=1.8e+02 Score=18.88 Aligned_cols=36 Identities=17% Similarity=-0.087 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+++|-..+.+++..++...+++.....+|..+|...
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a 69 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASA 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655543
No 49
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.71 E-value=2.7e+02 Score=20.61 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy13149 4 LENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVK 73 (89)
Q Consensus 4 lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL 73 (89)
++.-++..+..+-.|.+++.++..==++..+...+...|..+...-..++.|+.....+-.+--...+.+
T Consensus 7 ~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEv 76 (207)
T PF05546_consen 7 LSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREV 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777776654344444444445555555555555555555555544444333433
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.77 E-value=1.8e+02 Score=24.16 Aligned_cols=18 Identities=0% Similarity=0.148 Sum_probs=7.4
Q ss_pred HHHHhhhHHHHHHHHhhh
Q psy13149 59 AEEADKKYDETAGVKGLF 76 (89)
Q Consensus 59 aeead~Kyde~arkL~il 76 (89)
..+.+.|.++++..+..|
T Consensus 99 ~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 51
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.63 E-value=1.6e+02 Score=17.55 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=10.7
Q ss_pred hccccchHHHHHHHHHHHHHH
Q psy13149 35 RFFPIQKYFFMDALENQLKEA 55 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea 55 (89)
+.|+..+..+|..|..++.++
T Consensus 38 E~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555443
No 52
>PRK11519 tyrosine kinase; Provisional
Probab=25.23 E-value=2.9e+02 Score=23.36 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhh
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFV 28 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k 28 (89)
-++.+|...+..+..++.++...-.+
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888887777765443
No 53
>KOG2077|consensus
Probab=24.91 E-value=1.9e+02 Score=25.19 Aligned_cols=58 Identities=21% Similarity=0.118 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHH--------hhhhhhhhhcccc----chHHHHHHHHHHHHHHHHH
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVI--------FVCGNRERRFFPI----QKYFFMDALENQLKEARFL 58 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~--------~k~~~~~~e~r~~----~~Ee~l~~le~qLKea~~~ 58 (89)
|..+|+.|+.++..+.+|.++|.+-. |++.-++-=.|.. +.-++|..|+..+++.+.+
T Consensus 359 i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMi 428 (832)
T KOG2077|consen 359 IRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMI 428 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
No 54
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.80 E-value=2.4e+02 Score=19.48 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
+++|-..+.+.+.+++..-+++.....+|..+|..
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555543
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.40 E-value=2.5e+02 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=10.3
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q psy13149 36 FFPIQKYFFMDALENQLKEAR 56 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea~ 56 (89)
..+..+..++..++..|..++
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444
No 56
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=23.16 E-value=1.7e+02 Score=18.29 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 43 FFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 43 e~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
.+|..++..+..-+++.++.++..++.-.+|..+.
T Consensus 35 ~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 35 RELAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888888888777776554
No 57
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.82 E-value=2.5e+02 Score=18.93 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 42 YFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 42 Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
++|=..+.+.|..++..-+++.....+|..+|..
T Consensus 38 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14471 38 KEREDSIKNALASAEEARKEMQNLQADNERLLKE 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555543
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=5.1e+02 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy13149 40 QKYFFMDALENQLKEARFLAEEADKKYD 67 (89)
Q Consensus 40 ~~Ee~l~~le~qLKea~~~aeead~Kyd 67 (89)
..+.++..|+..|.+.+...+...++..
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777666655555555544
No 59
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=22.12 E-value=2.4e+02 Score=18.48 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 42 YFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 42 Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
++|-..+.+.|..++..-.++.....+|..+|..
T Consensus 25 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~ 58 (147)
T TIGR01144 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKE 58 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554443
No 60
>KOG0976|consensus
Probab=21.64 E-value=6e+02 Score=23.27 Aligned_cols=28 Identities=32% Similarity=0.107 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q psy13149 6 NQLKEARFLAEEADKKYDEVIFVCGNRE 33 (89)
Q Consensus 6 ~~L~~a~~~~eeA~~k~eEv~~k~~~~~ 33 (89)
-.|.+|+.+++.-+.|..+...++.+-.
T Consensus 337 c~LlEarrk~egfddk~~eLEKkrd~al 364 (1265)
T KOG0976|consen 337 CALLEARRKAEGFDDKLNELEKKRDMAL 364 (1265)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 3567778888888888888877765543
No 61
>smart00574 POX domain associated with HOX domains.
Probab=21.43 E-value=2.3e+02 Score=19.76 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHH--HHHhhhHHHHHHHHhhhcccc
Q psy13149 45 MDALENQLKEARFLA--EEADKKYDETAGVKGLFSPIR 80 (89)
Q Consensus 45 l~~le~qLKea~~~a--eead~Kyde~arkL~ile~~~ 80 (89)
++-.+.|.|.+++.. ++-|++|..|=.++.++-.+.
T Consensus 70 ~~r~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~ssF 107 (140)
T smart00574 70 AERQELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSF 107 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888777766 999999999999988775543
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.05 E-value=3e+02 Score=18.82 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy13149 41 KYFFMDALENQLKEARFLAEEADKKYDETAGVKGLF 76 (89)
Q Consensus 41 ~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~il 76 (89)
+++|-..+.+++.+++..-.++.....+|..+|...
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666665544
Done!