Query psy13149
Match_columns 89
No_of_seqs 124 out of 290
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.5 2E-14 6.8E-19 98.8 5.9 76 5-82 16-91 (147)
2 2b9c_A Striated-muscle alpha t 99.4 4E-13 1.4E-17 92.3 6.3 79 1-79 54-144 (147)
3 2efr_A General control protein 99.1 4.8E-10 1.6E-14 77.7 7.3 75 1-80 2-86 (155)
4 2efr_A General control protein 96.8 0.0087 3E-07 41.1 8.5 78 4-81 26-115 (155)
5 3u1c_A Tropomyosin alpha-1 cha 93.6 0.76 2.6E-05 28.9 8.5 71 3-73 13-88 (101)
6 1ic2_A Tropomyosin alpha chain 91.3 0.78 2.7E-05 27.6 6.0 61 2-62 9-74 (81)
7 3u59_A Tropomyosin beta chain; 88.6 3 0.0001 25.9 8.5 74 4-77 14-99 (101)
8 3u59_A Tropomyosin beta chain; 85.6 4.7 0.00016 25.0 9.0 58 11-70 14-71 (101)
9 2k48_A Nucleoprotein; viral pr 80.1 3.6 0.00012 26.5 4.8 53 3-55 46-101 (107)
10 3u1c_A Tropomyosin alpha-1 cha 72.4 14 0.0005 22.8 8.8 74 3-78 27-100 (101)
11 2ic6_A Nucleocapsid protein; h 72.2 8.8 0.0003 23.3 4.8 53 3-55 16-71 (78)
12 4fi5_A Nucleoprotein; structur 71.7 7.2 0.00025 25.3 4.6 56 2-57 32-90 (113)
13 2ic9_A Nucleocapsid protein; h 69.2 12 0.00042 23.5 5.2 55 3-57 16-73 (96)
14 3efg_A Protein SLYX homolog; x 66.7 14 0.00046 22.1 4.8 47 34-80 12-58 (78)
15 3mq9_A Bone marrow stromal ant 61.1 48 0.0017 24.6 8.2 21 42-62 442-462 (471)
16 1yzm_A FYVE-finger-containing 45.1 30 0.001 19.3 3.5 13 43-55 28-40 (51)
17 1z0k_B FYVE-finger-containing 40.9 35 0.0012 20.2 3.5 24 42-70 26-49 (69)
18 3mq7_A Bone marrow stromal ant 35.7 90 0.0031 20.3 8.4 62 2-64 28-99 (121)
19 4dk0_A Putative MACA; alpha-ha 34.7 1.2E+02 0.0041 21.4 8.3 32 44-75 116-147 (369)
20 3bas_A Myosin heavy chain, str 34.7 74 0.0025 19.0 7.4 43 35-77 41-83 (89)
21 3cvf_A Homer-3, homer protein 33.2 80 0.0027 18.9 4.5 24 34-57 18-41 (79)
22 1z0j_B FYVE-finger-containing 31.8 55 0.0019 18.8 3.2 14 43-56 35-48 (59)
23 2yko_A LINE-1 ORF1P; RNA-bindi 30.8 81 0.0028 22.6 4.7 44 36-79 6-49 (233)
24 2v71_A Nuclear distribution pr 27.7 1.5E+02 0.0052 20.4 8.6 45 36-80 109-153 (189)
25 2khk_A ATP synthase subunit B; 27.6 42 0.0014 17.6 2.2 34 44-77 7-40 (53)
26 1ic2_A Tropomyosin alpha chain 27.5 95 0.0033 18.0 9.1 66 8-75 8-73 (81)
27 2pnv_A Small conductance calci 27.2 46 0.0016 17.8 2.2 20 36-55 16-35 (43)
28 3v1a_A Computational design, M 27.1 75 0.0026 17.4 3.1 14 43-56 27-40 (48)
29 2eqb_B RAB guanine nucleotide 26.0 1.2E+02 0.0042 18.8 8.3 44 34-77 45-89 (97)
30 3fpp_A Macrolide-specific effl 24.4 1.8E+02 0.0063 20.2 7.9 35 44-78 115-149 (341)
31 4fla_A Regulation of nuclear P 23.5 1.6E+02 0.0056 19.4 8.0 60 12-71 74-135 (152)
32 3ni0_A Bone marrow stromal ant 22.4 1.5E+02 0.0052 18.5 8.3 22 2-23 21-42 (99)
33 1lwu_C Fibrinogen gamma chain; 21.7 1.7E+02 0.0057 21.7 5.2 15 62-76 38-52 (323)
34 1deq_A Fibrinogen (alpha chain 21.6 2.8E+02 0.0096 21.4 6.9 27 35-61 119-145 (390)
35 1i84_S Smooth muscle myosin he 20.5 2.2E+02 0.0077 24.2 6.2 82 1-84 880-961 (1184)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.51 E-value=2e-14 Score=98.82 Aligned_cols=76 Identities=32% Similarity=0.252 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccchh
Q psy13149 5 ENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAV 82 (89)
Q Consensus 5 E~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~~~ 82 (89)
+..|..+..++++|.+.+|+ +.+++++++||...++++|..++.+||+|+.+++++++||++++|||+++++.+..
T Consensus 16 eerl~~a~~kLeeaek~adE--~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer 91 (147)
T 2b9c_A 16 QERLATALQKLEEAEKAADE--SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 91 (147)
T ss_dssp GTTTTHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455777788888888888 77899999999999999999999999999999999999999999999999998764
No 2
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.40 E-value=4e-13 Score=92.32 Aligned_cols=79 Identities=28% Similarity=0.173 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh------------hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRE------------RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDE 68 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~------------~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde 68 (89)
|..||.+|++|+.++++|++||++++|++++.+ .++++..+++.|..+.++||+++.+.++++.+.+.
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~ 133 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYH 133 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 468999999999999999999999999998765 26899999999999999999999999999999999
Q ss_pred HHHHHhhhccc
Q psy13149 69 TAGVKGLFSPI 79 (89)
Q Consensus 69 ~arkL~ile~~ 79 (89)
|..+|.+|+.-
T Consensus 134 yee~I~~L~~k 144 (147)
T 2b9c_A 134 LENEVARLKKL 144 (147)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 3
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.05 E-value=4.8e-10 Score=77.67 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=66.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh----------hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRE----------RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETA 70 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~----------~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~a 70 (89)
|..||.||++| +++|++||+||+| + ... .++++..+++.+..+.++||+++.+.++++.|.+.|.
T Consensus 2 ~~~lE~qlkea---ae~ad~KyeEvaR-~-E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yE 76 (155)
T 2efr_A 2 MKQLEDKVEEL---LSKNYHLENEVAR-L-KKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 76 (155)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 46899999999 8999999999999 2 111 2688999999999999999999999999999999999
Q ss_pred HHHhhhcccc
Q psy13149 71 GVKGLFSPIR 80 (89)
Q Consensus 71 rkL~ile~~~ 80 (89)
.+|+.++..+
T Consensus 77 eqIk~L~~kL 86 (155)
T 2efr_A 77 EEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997654
No 4
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.84 E-value=0.0087 Score=41.10 Aligned_cols=78 Identities=19% Similarity=0.004 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhh-----hhhhhc-------cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13149 4 LENQLKEARFLAEEADKKYDEVIFVCG-----NRERRF-------FPIQKYFFMDALENQLKEARFLAEEADKKYDETAG 71 (89)
Q Consensus 4 lE~~L~~a~~~~eeA~~k~eEv~~k~~-----~~~~e~-------r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~ar 71 (89)
+|..|.+|..+++.|..+.-+....+. ++.++. |-...+++|+.|..+||+|+.-++.|.++...+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999766665542 233332 33455677777777777777777777777666666
Q ss_pred HHhhhcccch
Q psy13149 72 VKGLFSPIRA 81 (89)
Q Consensus 72 kL~ile~~~~ 81 (89)
.|-.+++.+.
T Consensus 106 ~id~lEd~L~ 115 (155)
T 2efr_A 106 SIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.63 E-value=0.76 Score=28.88 Aligned_cols=71 Identities=11% Similarity=-0.117 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----hhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNR-----ERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVK 73 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~-----~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL 73 (89)
.|-...+.|..+++.+..++.......... .+..|+..+++.++..+.+|+.+....+++++...+.+..+
T Consensus 13 ~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev 88 (101)
T 3u1c_A 13 MLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655544433222 23457777888888888888888887777777666444333
No 6
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.26 E-value=0.78 Score=27.58 Aligned_cols=61 Identities=20% Similarity=-0.024 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh-----hhccccchHHHHHHHHHHHHHHHHHHHHH
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVIFVCGNRE-----RRFFPIQKYFFMDALENQLKEARFLAEEA 62 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~-----~e~r~~~~Ee~l~~le~qLKea~~~aeea 62 (89)
..+....+.|...++.+..++.+........+ +..|+..+++.++..+..|..+...-+++
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888777776554432211 23344444455554554444444444333
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.63 E-value=3 Score=25.89 Aligned_cols=74 Identities=19% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhh-----hhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHH
Q psy13149 4 LENQLKEARFLAEEADKKYDEVIFVCGN-----RERRFFPIQKYFFMDALENQLKEARFLAEEADKKYD-------ETAG 71 (89)
Q Consensus 4 lE~~L~~a~~~~eeA~~k~eEv~~k~~~-----~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyd-------e~ar 71 (89)
|-...+.|..+++.+..+.........- ..+..++..+++.++..+.+|+.+....+.+..... .+.|
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554443332211 112345555666666666666665555555544444 4445
Q ss_pred HHhhhc
Q psy13149 72 VKGLFS 77 (89)
Q Consensus 72 kL~ile 77 (89)
+|..++
T Consensus 94 riqllE 99 (101)
T 3u59_A 94 RIQLVE 99 (101)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 555554
No 8
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.57 E-value=4.7 Score=24.96 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13149 11 ARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETA 70 (89)
Q Consensus 11 a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~a 70 (89)
-+.-.+.|..+++....+ .+..+.+....++.+..+...++.++.-.+.+...+..+.
T Consensus 14 lk~e~e~a~d~ae~~e~~--~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEAD--KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555553332 3333444444555555555555444444444443333333
No 9
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=80.09 E-value=3.6 Score=26.49 Aligned_cols=53 Identities=25% Similarity=0.113 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHH---hhhhhhhhhccccchHHHHHHHHHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVI---FVCGNRERRFFPIQKYFFMDALENQLKEA 55 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~---~k~~~~~~e~r~~~~Ee~l~~le~qLKea 55 (89)
..|.||-.|.+++.+|.+.|+-=- .+-+...|.+-...++.+|..+..+|..+
T Consensus 46 ~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 46 AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888775311 12223333333445667777777777554
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=72.45 E-value=14 Score=22.80 Aligned_cols=74 Identities=14% Similarity=-0.080 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSP 78 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~ 78 (89)
.++.+++.+...+..++.-.....+++.. +++-.....+++......|..+...+.++..-...+.|+|..|+.
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~--lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRV--TEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555555555555544444444332 233333455666666677777777777777777777777777664
No 11
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=72.18 E-value=8.8 Score=23.35 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHH---hhhhhhhhhccccchHHHHHHHHHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVI---FVCGNRERRFFPIQKYFFMDALENQLKEA 55 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~---~k~~~~~~e~r~~~~Ee~l~~le~qLKea 55 (89)
..|.||-.|.+++.+|.+.|+-=- .+-+...|..-...++.+|..+..+|..+
T Consensus 16 ~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 16 LHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888887775211 12222223333445566777777777554
No 12
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=71.72 E-value=7.2 Score=25.32 Aligned_cols=56 Identities=25% Similarity=0.196 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHH---hhhhhhhhhccccchHHHHHHHHHHHHHHHH
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVI---FVCGNRERRFFPIQKYFFMDALENQLKEARF 57 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~---~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~ 57 (89)
...|.||-.|.+++.+|.+.|+-=- .+-+...|..-...++.+|..+..+|..+..
T Consensus 32 ~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 32 NAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888775311 1222333333444567777777777766544
No 13
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=69.16 E-value=12 Score=23.53 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHH---hhhhhhhhhccccchHHHHHHHHHHHHHHHH
Q psy13149 3 ALENQLKEARFLAEEADKKYDEVI---FVCGNRERRFFPIQKYFFMDALENQLKEARF 57 (89)
Q Consensus 3 ~lE~~L~~a~~~~eeA~~k~eEv~---~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~ 57 (89)
..|.||-.|.+++.+|.+.|+-=- .+-+...|..-...++.+|..+..+|..+-.
T Consensus 16 ~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 16 LHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888887775311 1222233333344567788888888866554
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.65 E-value=14 Score=22.13 Aligned_cols=47 Identities=11% Similarity=-0.141 Sum_probs=39.6
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIR 80 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~ 80 (89)
+++|...+|.++-.++..+.++....-.-.+..+...+++..+.+-+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999999988888888888898888888876544
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.08 E-value=48 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13149 42 YFFMDALENQLKEARFLAEEA 62 (89)
Q Consensus 42 Ee~l~~le~qLKea~~~aeea 62 (89)
..++..++++++.+.+.-+++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444443
No 16
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=45.12 E-value=30 Score=19.29 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy13149 43 FFMDALENQLKEA 55 (89)
Q Consensus 43 e~l~~le~qLKea 55 (89)
+++.+|+.+|+++
T Consensus 28 DEV~~Le~NLrEL 40 (51)
T 1yzm_A 28 DEVRTLQENLRQL 40 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 17
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=40.89 E-value=35 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13149 42 YFFMDALENQLKEARFLAEEADKKYDETA 70 (89)
Q Consensus 42 Ee~l~~le~qLKea~~~aeead~Kyde~a 70 (89)
.+++..+++-++.|+ .++|||||+
T Consensus 26 ~EQ~~~I~~yI~qAk-----~~~r~DEV~ 49 (69)
T 1z0k_B 26 LQQIHNITSFIRQAK-----AAGRMDEVR 49 (69)
T ss_dssp HHHHHHHHHHHHHHH-----HTTCHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HhcCcHHHH
Confidence 455555555555543 456666654
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.73 E-value=90 Score=20.28 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh---h-------hccccchHHHHHHHHHHHHHHHHHHHHHhh
Q psy13149 2 DALENQLKEARFLAEEADKKYDEVIFVCGNRE---R-------RFFPIQKYFFMDALENQLKEARFLAEEADK 64 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~---~-------e~r~~~~Ee~l~~le~qLKea~~~aeead~ 64 (89)
.+|+.+|..|+.-+-++...+---.+. ++.- + ..+...++.+|..|..+|+.+..-.+...+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqT-V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHT-VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999998888877655432221 1111 1 123445556666666666655555544433
No 19
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.72 E-value=1.2e+02 Score=21.44 Aligned_cols=32 Identities=6% Similarity=0.055 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 44 FMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 44 ~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
.++....++..++.....+..........|..
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544444444443333333333333
No 20
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.67 E-value=74 Score=18.99 Aligned_cols=43 Identities=12% Similarity=-0.102 Sum_probs=20.3
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
+.....+..+...|..|+.++.-.......+-.+...+|..++
T Consensus 41 e~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 41 EEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444554555544444444444444555554443
No 21
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.22 E-value=80 Score=18.94 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=16.0
Q ss_pred hhccccchHHHHHHHHHHHHHHHH
Q psy13149 34 RRFFPIQKYFFMDALENQLKEARF 57 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qLKea~~ 57 (89)
.|.++..+++++..++++|...+.
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 355566677788888777765543
No 22
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=31.84 E-value=55 Score=18.75 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy13149 43 FFMDALENQLKEAR 56 (89)
Q Consensus 43 e~l~~le~qLKea~ 56 (89)
+++..|+.+|+++.
T Consensus 35 DEV~~Le~NLrEL~ 48 (59)
T 1z0j_B 35 DEVEVLTENLRELK 48 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 23
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.77 E-value=81 Score=22.62 Aligned_cols=44 Identities=11% Similarity=-0.098 Sum_probs=22.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy13149 36 FFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPI 79 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~ 79 (89)
||....|+++..++..+.+.....+.-..+....+..|..+.+.
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666655555554444444444445444443
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.65 E-value=1.5e+02 Score=20.42 Aligned_cols=45 Identities=9% Similarity=0.072 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q psy13149 36 FFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIR 80 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~ 80 (89)
.++..+|-.-+.++.+..-+..+.++...||+.+-.++++|+..+
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888999999999999999999988654
No 25
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=27.65 E-value=42 Score=17.60 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 44 FMDALENQLKEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 44 ~l~~le~qLKea~~~aeead~Kyde~arkL~ile 77 (89)
+=..+.+.|..++..-.++.....+|..+|.-..
T Consensus 7 R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar 40 (53)
T 2khk_A 7 RQKEIADGLASAERAHKDLDLAKASATDQLKKAK 40 (53)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577788888888888888888888776543
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.52 E-value=95 Score=18.03 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy13149 8 LKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGL 75 (89)
Q Consensus 8 L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~i 75 (89)
+..-+.-.+.|..+++.+..++ +..+.+....+..+..|...+..++.-.+.+..+...+..+|..
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l--~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADK--KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555433322 22233444555555555555555555555555555555555443
No 27
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.20 E-value=46 Score=17.78 Aligned_cols=20 Identities=15% Similarity=-0.119 Sum_probs=10.8
Q ss_pred ccccchHHHHHHHHHHHHHH
Q psy13149 36 FFPIQKYFFMDALENQLKEA 55 (89)
Q Consensus 36 ~r~~~~Ee~l~~le~qLKea 55 (89)
+|...+|++|..++..|..+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 34445556666666555443
No 28
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.12 E-value=75 Score=17.39 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q psy13149 43 FFMDALENQLKEAR 56 (89)
Q Consensus 43 e~l~~le~qLKea~ 56 (89)
+++.+|+.+|+++.
T Consensus 27 dEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 27 DEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666665543
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.96 E-value=1.2e+02 Score=18.82 Aligned_cols=44 Identities=14% Similarity=0.000 Sum_probs=29.1
Q ss_pred hhccccchHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhhc
Q psy13149 34 RRFFPIQKYFFMDALENQL-KEARFLAEEADKKYDETAGVKGLFS 77 (89)
Q Consensus 34 ~e~r~~~~Ee~l~~le~qL-Kea~~~aeead~Kyde~arkL~ile 77 (89)
.|+.....+.+++.|..+| .+|..+.-.+.+....+..+...|.
T Consensus 45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777888888776 4666666666666666666655553
No 30
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.42 E-value=1.8e+02 Score=20.24 Aligned_cols=35 Identities=6% Similarity=-0.004 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q psy13149 44 FMDALENQLKEARFLAEEADKKYDETAGVKGLFSP 78 (89)
Q Consensus 44 ~l~~le~qLKea~~~aeead~Kyde~arkL~ile~ 78 (89)
.++....++..++.....+..........|.....
T Consensus 115 ~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 115 DLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333334444444444433
No 31
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.52 E-value=1.6e+02 Score=19.35 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhHHhhhh--hhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13149 12 RFLAEEADKKYDEVIFVCG--NRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAG 71 (89)
Q Consensus 12 ~~~~eeA~~k~eEv~~k~~--~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~ar 71 (89)
....++|...+.+....+. +..|..=...+++....+..++.+++...+++-.|.+.+..
T Consensus 74 ~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~ 135 (152)
T 4fla_A 74 SKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544442 22233334456777777788888888888877766665543
No 32
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.39 E-value=1.5e+02 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q psy13149 2 DALENQLKEARFLAEEADKKYD 23 (89)
Q Consensus 2 ~~lE~~L~~a~~~~eeA~~k~e 23 (89)
.+|+.+|..|+.-+-++...+-
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAa 42 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQAN 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999988877765544
No 33
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.72 E-value=1.7e+02 Score=21.72 Aligned_cols=15 Identities=0% Similarity=-0.314 Sum_probs=6.7
Q ss_pred HhhhHHHHHHHHhhh
Q psy13149 62 ADKKYDETAGVKGLF 76 (89)
Q Consensus 62 ad~Kyde~arkL~il 76 (89)
...+.++...+|..+
T Consensus 38 ~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.64 E-value=2.8e+02 Score=21.36 Aligned_cols=27 Identities=4% Similarity=-0.298 Sum_probs=14.0
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHH
Q psy13149 35 RFFPIQKYFFMDALENQLKEARFLAEE 61 (89)
Q Consensus 35 e~r~~~~Ee~l~~le~qLKea~~~aee 61 (89)
+.++.-+.+++...-.+|+.++...++
T Consensus 119 e~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444555555444455555555544
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.51 E-value=2.2e+02 Score=24.23 Aligned_cols=82 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q psy13149 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKKYDETAGVKGLFSPIR 80 (89)
Q Consensus 1 i~~lE~~L~~a~~~~eeA~~k~eEv~~k~~~~~~e~r~~~~Ee~l~~le~qLKea~~~aeead~Kyde~arkL~ile~~~ 80 (89)
+..++.++.........+...+.. ........+.....+..++..++.++..+....++......++..++..++..+
T Consensus 880 l~ele~~l~~Le~e~~~l~~~L~~--e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el 957 (1184)
T 1i84_S 880 LKELEQKHTQLCEEKNLLQEKLQA--ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhc
Q psy13149 81 AVVR 84 (89)
Q Consensus 81 ~~~~ 84 (89)
...+
T Consensus 958 ~~L~ 961 (1184)
T 1i84_S 958 LDLE 961 (1184)
T ss_dssp ----
T ss_pred HHHH
Done!