RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13149
(89 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 4e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 45 MDALENQLKEARFLAEEADKKYDETAGVKGLFSPIRAVVR 84
MD + K A+ + AD + +T G FS I +V
Sbjct: 1633 MDLYKTS-KAAQDVWNRADNHFKDTYG----FS-ILDIVI 1666
Score = 31.6 bits (71), Expect = 0.021
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 1 MDALENQLKEARFLAEEADKKYDEVI-F-----VCGNRERRFFPIQKYFFMDALENQLKE 54
MD + K A+ + AD + + F V N P+ + +
Sbjct: 1633 MDLYKTS-KAAQDVWNRADNHFKDTYGFSILDIVINN------PVNLTIHFGGEKGKRIR 1685
Query: 55 ARFLAEEADKKYDETAGVKGLFSPI 79
+ A + D + +F I
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEI 1710
Score = 25.0 bits (54), Expect = 4.1
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 26/84 (30%)
Query: 11 ARFLAE--------EADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEA 62
A +AE + +K V+F G R +P +L + E
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT------SLPPSILE-------- 325
Query: 63 DKKYDETAGVKGLFSPIRAVVRLP 86
D +G+ SP+ ++ L
Sbjct: 326 ----DSLENNEGVPSPMLSISNLT 345
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP:
h.1.5.1
Length = 147
Score = 31.2 bits (70), Expect = 0.019
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAE 60
+D + +L A EEA+K DE E R ++ M+ E QLKEA+ +AE
Sbjct: 12 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEK--MEIQEIQLKEAKHIAE 69
Query: 61 EADKKYDETA 70
+AD+KY+E A
Sbjct: 70 DADRKYEEVA 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.79
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 30/55 (54%)
Query: 33 ERRFFPIQKYFFMDALENQLKEARFLAEEADKKY-DETAGVKGLFSP---IRAVV 83
E++ ++K L+ L K Y D++A P I+A +
Sbjct: 18 EKQ--ALKK------LQASL-----------KLYADDSA-------PALAIKATM 46
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural
genomics consortium, SGC, transferase, PARP14 macro 2;
HET: AR6; 2.20A {Homo sapiens}
Length = 221
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 12 RFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQL 52
+F ++ K EV F+ + F D +
Sbjct: 179 KFSSKNQLKTLQEVHFLLHPSDHENIQA----FSDEFARRA 215
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 25.7 bits (57), Expect = 2.0
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 12 RFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAE 60
+ +K+ V +CGN + + + LKE R + +
Sbjct: 196 STIGLPMNKETSHV-MLCGNPQ----------MVRDTQQLLKETRQMTK 233
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain,
macro-domain, structural protein; 1.60A {Rattus
norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A*
3iif_A* 1zr5_A
Length = 193
Score = 25.3 bits (56), Expect = 3.0
Identities = 3/18 (16%), Positives = 4/18 (22%)
Query: 12 RFLAEEADKKYDEVIFVC 29
+ V FV
Sbjct: 157 SYFVSTMSSSIKTVYFVL 174
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 24.7 bits (54), Expect = 4.3
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 24 EVIFVCGNRERRFFPIQKYFFMDALE 49
E++ +R P +FF D ++
Sbjct: 313 EIVKALS---QRDPPHNNFFFFDGMK 335
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 24.7 bits (53), Expect = 5.1
Identities = 12/79 (15%), Positives = 24/79 (30%)
Query: 2 DALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEE 61
D QL + R E + + N R Q+ F +D + + +
Sbjct: 930 DEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLG 989
Query: 62 ADKKYDETAGVKGLFSPIR 80
+ ++G I+
Sbjct: 990 VKDLQENLLVLRGKNEIIQ 1008
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.3 bits (52), Expect = 5.8
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 1 MDALENQLKEARFLAEEADKKYDEVIFVCGNRERRFFPIQKYFFMDALENQLKEARFLAE 60
+DA +++ E+A K +E +R+ ++K + + N++ + F +
Sbjct: 101 LDAASKVMEQE--WREKAKKDLEEW------NQRQSEQVEK----NKINNRIADKAFYQQ 148
Query: 61 -EAD 63
+AD
Sbjct: 149 PDAD 152
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core,
chromatin regulator, nucleus, DNA-binding protein,
phosphoprotein; 2.09A {Homo sapiens}
Length = 193
Score = 24.1 bits (53), Expect = 6.7
Identities = 2/18 (11%), Positives = 5/18 (27%)
Query: 12 RFLAEEADKKYDEVIFVC 29
+ + V F+
Sbjct: 160 AHFDDSSASSLKNVYFLL 177
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 23.9 bits (51), Expect = 9.9
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 24 EVIFVCGNRERRFFPIQKYFFMDALENQ 51
EVI + ++F + +
Sbjct: 501 EVIKIIT---KQFVIFNNTYIYSGMSQT 525
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.399
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,455,360
Number of extensions: 79810
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 38
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)