RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13149
         (89 letters)



>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 188

 Score = 23.5 bits (50), Expect = 3.8
 Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 1/33 (3%)

Query: 2   DALENQLKEAR-FLAEEADKKYDEVIFVCGNRE 33
            A +  LK    +           V FV  + E
Sbjct: 141 TAAQLILKAISSYFVSTMSSSIKTVYFVLFDSE 173


>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
           reductase) {Escherichia coli [TaxId: 562]}
          Length = 148

 Score = 23.0 bits (48), Expect = 6.8
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 10/40 (25%)

Query: 26  IFVCGNRERRFFPIQKYFFMDALENQLKEARFLAEEADKK 65
           + +CGN +           +   +  LKE R + +   ++
Sbjct: 109 VMLCGNPQ----------MVRDTQQLLKETRQMTKHLRRR 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,047
Number of extensions: 15051
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)