BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1315
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 124/181 (68%), Gaps = 8/181 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG A F+ L G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 1 MGNIFANLFKGL--FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 57
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I+F +WDVGGQ+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ +
Sbjct: 58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQDLPNA+ +I LGL+ L + + +YIQATCA +GDGL+EG++
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDW 172
Query: 181 L 181
L
Sbjct: 173 L 173
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 118/166 (71%), Gaps = 6/166 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDV
Sbjct: 13 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDV 67
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQ
Sbjct: 68 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DLPNA+ +I LGL+ L + + +YIQATCA +GDGL+EG++ L
Sbjct: 128 DLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWL 172
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 118/166 (71%), Gaps = 6/166 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDV
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDV 216
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQ
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DLPNA+ +I LGL+ L + + +YIQATCA +GDGL+EG++ L
Sbjct: 277 DLPNAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWL 321
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 117/162 (72%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLPN
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ +I LGL+ L + + +YIQATCA +GDGL+EG++ L
Sbjct: 116 AMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWL 156
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 117/163 (71%), Gaps = 6/163 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
S+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGG
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGL 56
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLP
Sbjct: 57 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 116
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
NA+ +I LGL+ L + + +YIQATCA +GDGL+EG++ L
Sbjct: 117 NAMNAAEITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWL 158
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 123/188 (65%), Gaps = 8/188 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG + F L A + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 4 MGLSFGKLFSRLFAK--KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 60
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I+F +WDVGGQ+K+RPLW+ Y + T G+IFV+DS D +R+ E + EL + +
Sbjct: 61 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQDLPNA+ +I LGL+ L H +YIQ+TCA +G+GL+EG++
Sbjct: 117 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDW 175
Query: 181 LYQLILKK 188
L I K
Sbjct: 176 LSNNIASK 183
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 120/181 (66%), Gaps = 8/181 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F L G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 1 MGLTISSLFSRL--FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 57
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I F +WDVGGQ+++RPLWK Y + T G+IFV+DS D ER++EV EL K +
Sbjct: 58 ----YKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV 113
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQDLPNA+ I ++ LGL L N +Y+QATCA G GL+EG++
Sbjct: 114 DELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRN-RTWYVQATCATQGTGLYEGLDW 172
Query: 181 L 181
L
Sbjct: 173 L 173
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 120/181 (66%), Gaps = 12/181 (6%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGK + F G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V
Sbjct: 1 MGKVLSKIF------GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT- 53
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + F +WDVGGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I +
Sbjct: 54 ----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + ILI ANKQDLP+A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTW 168
Query: 181 L 181
L
Sbjct: 169 L 169
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 121/182 (66%), Gaps = 10/182 (5%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F NL G+ + I+M+GLD AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 1 MGLYASKLFSNL--FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQ- 57
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I+F +WDVGGQ+++R LW+ Y R T+G+IFVIDS D R+ E + E+++ + N
Sbjct: 58 ----YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAR-EVMQRMLN 112
Query: 121 NDNF-NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
D N L+ ANKQDLP A+ +I + LGL+ + N ++IQ+TCA +G+GL+EG+
Sbjct: 113 EDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRN-RPWFIQSTCATSGEGLYEGLE 171
Query: 180 EL 181
L
Sbjct: 172 WL 173
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 115/166 (69%), Gaps = 6/166 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDV
Sbjct: 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDV 63
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQ
Sbjct: 64 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DLP+A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 168
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%), Gaps = 6/173 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I F +WDV
Sbjct: 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNICFTVWDV 80
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y + T G+IFV+DS D ER++E EL K ++ ++ + +L+ ANKQ
Sbjct: 81 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQ 140
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
D+PNA+ + ++ LGL L + +Y+QATCA G GL++G++ L + K+
Sbjct: 141 DMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 119/178 (66%), Gaps = 10/178 (5%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGK 64
++ F NL G+ + I+M+GLD AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 5 ASKLFSNL--FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQ----- 57
Query: 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124
K I+F +WDVGGQ+++R LW+ Y R T+G+IFV+DS D R+ E + E+++ + N D
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR-EVMQRMLNEDEL 116
Query: 125 -NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
N L+ ANKQDLP A+ +I + LGL+ + N ++IQATCA +G+GL+EG+ L
Sbjct: 117 RNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRN-RPWFIQATCATSGEGLYEGLEWL 173
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 120/178 (67%), Gaps = 6/178 (3%)
Query: 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIG 63
++A+ ++ + + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V
Sbjct: 307 STASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT---- 362
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123
K + F +WDVGGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I + +
Sbjct: 363 -YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM 421
Query: 124 FNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ ILI ANKQDLP+A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 422 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 478
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 113/162 (69%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDVGGQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQDLP+
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 116 AMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 156
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 113/162 (69%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDVGGQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQDLP+
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 116 AMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 156
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G + I+M+GLD+AGKT+ LY+LK + + T+PTIGFN E V+ K I+F +WDV
Sbjct: 14 GKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDV 68
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y + T IIFV+DS D +R+ E + EL+K + ++ N +L+ ANK
Sbjct: 69 GGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKH 128
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DLP A+ I ++ + LGL + N +Y Q +CA GDGL+EG++ L
Sbjct: 129 DLPQAMSISEVTEKLGLQTIKNRK-WYCQTSCATNGDGLYEGLDWL 173
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 119/181 (65%), Gaps = 12/181 (6%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MGK + F G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V
Sbjct: 1 MGKVLSKIF------GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT- 53
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + F +WDVGG +K+RPLW+ Y T G+IFV+D D +R++E + EL + I +
Sbjct: 54 ----YKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + ILI ANKQDLP+A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTW 168
Query: 181 L 181
L
Sbjct: 169 L 169
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
V I+M+GLD+AGKTT LY++K + + T+PTIGFN E V+ + I+F +WDVGGQ
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVE-----FRNISFTVWDVGGQ 71
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+K+RPLW+ Y TDG+IFV+DS D ER+++ + EL + I + + IL+ ANKQDLP
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLP 131
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
NA+ ++ + L L + + ++IQ+TCA GDGL+EG + L
Sbjct: 132 NAMSAAEVTEKLHLNTIRERN-WFIQSTCATRGDGLYEGFDWL 173
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 8/163 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+M+GLD AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQ-----YKNISFTVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF-NVPILILANKQDLP 138
++R LW+ Y R T+G+IFV+DS D R+ E + E+++ + N D N L+ ANKQDLP
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAR-EVMQRMLNEDELRNAAWLVFANKQDLP 114
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ +I + LGL+ + N ++IQATCA +G+GL+EG+ L
Sbjct: 115 EAMSAAEITEKLGLHSIRN-RPWFIQATCATSGEGLYEGLEWL 156
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 6/165 (3%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDVG
Sbjct: 1 AMEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVG 55
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
G +K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQD
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 115
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
LP+A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 159
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDVGG +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGLD 57
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQDLP+
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A++ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 118 AMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 158
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 110/161 (68%), Gaps = 6/161 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+ LGLD+AGKTT LY+LK Q + T+PT+GFN E V K + F +WDVGGQ+K
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQDK 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQDLP+A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ +I++ LGL + + + +Y+Q +CA +GDGL+EG+ L
Sbjct: 117 XKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWL 156
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 119/181 (65%), Gaps = 10/181 (5%)
Query: 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQ 61
G ++ F NL G+ + I+M+GLD AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 2 GLFASKLFSNL--FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQ-- 57
Query: 62 IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121
C I+F +WDVGGQ+++R LW+ Y T+G+IFV+DS D R+ E + E+++ + N
Sbjct: 58 --YCN-ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAR-EVMQRMLNE 113
Query: 122 DNF-NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
D N L+ ANKQDLP A+ +I + LGL+ + N ++IQATCA +G+GL+EG+
Sbjct: 114 DELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRN-RPWFIQATCATSGEGLYEGLEW 172
Query: 181 L 181
L
Sbjct: 173 L 173
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F+ L S + + I++LGLD AGKTT LYRL+ + + T PTIGFN E +
Sbjct: 1 MGNIFSSMFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS- 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + +WD+GGQ +RP W+ Y T +IFV+DSTD +RM EL ++
Sbjct: 59 ----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + +L+ ANKQD P A+ ++ K L L EL + + I A+ AI G+G+ EG++
Sbjct: 115 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDW 173
Query: 181 LYQLI 185
L +I
Sbjct: 174 LIDVI 178
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL 71
L GS ++++GLD+AGKTT LY+ ++ ++T PTIG N E++ FL
Sbjct: 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-----INNTRFL 68
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + + D +LI
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 129 ANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 174
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 12 LQASGSSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINF 70
L GS H ++++GLD+AGKTT LY+ ++ ++T PTIG N E++ F
Sbjct: 14 LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-----INNTRF 68
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
L+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + + D +LI
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 128
Query: 131 LANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 129 FANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 175
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 6/157 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++++GLD+AGKTT LY+ ++ ++T PTIG N E++ FL+WD+GGQE L
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-----INNTRFLMWDIGGQESL 73
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R W +Y T+ +I V+DSTD ER+ + EL K + + D +LI ANKQD+ +
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+ +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 134 TVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 169
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 6/157 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++++GLD+AGKTT LY+ ++ ++T PTIG N E++ FL+WD+GGQE L
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-----INNTRFLMWDIGGQESL 73
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R W +Y T+ +I V+DSTD ER+ + EL K + + D +LI ANKQD+ +
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+ +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 134 TVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 169
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 6/157 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++++GLD+AGKTT LY+ ++ ++T PTIG N E++ K +FL+WD+GGQE L
Sbjct: 19 VIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIV-----VKNTHFLMWDIGGQESL 73
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R W +Y T+ II V+DS D ER+ K EL + + + D +LI ANKQD+ +
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+I K L L + + H ++IQ+ CA+TG+GL +G+
Sbjct: 134 TAAEISKYLTLSSIKD-HPWHIQSCCALTGEGLCQGL 169
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 110/184 (59%), Gaps = 6/184 (3%)
Query: 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK 66
+ L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ Q
Sbjct: 5 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ----- 59
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
G +WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ V
Sbjct: 60 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 119
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
P+LI ANKQDL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N + + +
Sbjct: 120 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNVN 178
Query: 187 KKRK 190
K+K
Sbjct: 179 AKKK 182
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 6/164 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G S V I++LGLD+AGKTT L +L + + PT GFN + V+ Q G +WD+
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-----GFKLNVWDI 55
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ VP+LI ANKQ
Sbjct: 56 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
DL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMN 158
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 110/184 (59%), Gaps = 6/184 (3%)
Query: 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK 66
+ L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ Q
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ----- 58
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
G +WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ V
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
P+LI ANKQDL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N + + +
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNVN 177
Query: 187 KKRK 190
K+K
Sbjct: 178 AKKK 181
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G S V I++LGLD+AGKTT L +L + + PT GFN + V+ Q G +WD+
Sbjct: 1 GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-----GFKLNVWDI 55
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG K+RP W+SY TD +I+VIDS D +R EE EL + ++ VP+LI ANKQ
Sbjct: 56 GGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
DL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMN 158
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+GGQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGQT 57
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQD+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ ++ LGL L + + I T A G GL E + L + LK R
Sbjct: 118 AMTPSEMANALGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVE-TLKSR 165
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+
Sbjct: 1 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDL 55
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG +RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQ
Sbjct: 56 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 115
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D+ A+ ++ LGL L + + I T A G GL E + L + +
Sbjct: 116 DMEQAMTSSEMANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETL 164
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE-----HRGFKLNIWDVGGQK 73
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ I++ L L + + H + IQ A+TG+ L GI+ L
Sbjct: 134 ALSXNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-----RGFKLNIWDVGGQK 73
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ I++ L L + + H + IQ A+TG+ L GI+ L
Sbjct: 134 ALSCNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWL 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH-----RGFKLNIWDVGGQK 71
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ I ++L L + + H + IQ A+TG+ L GI+ L
Sbjct: 132 ALSSNAIREVLELDSIRSHH-WCIQGCSAVTGENLLPGIDWL 172
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 6/164 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKT+ LYRL + TVPT+G N E ++ K I+F +WD+GGQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ-----YKNISFEVWDLGGQT 77
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y TD +I+V+DSTD +RM K EL + ++ +LI ANKQDLP+
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
A +I + LG+ + N + I + + TGDGL EG++ L +
Sbjct: 138 AASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMDWLVE 180
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 6/162 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGG +
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-----RGFKLNIWDVGGLK 56
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 116
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
A+ I++ L L + + H + IQ A+TG+ L GI+ L
Sbjct: 117 ALSCNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWL 157
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNTVPTIGFNCEKVKGQIGKCKGIN 69
L GS VH++ LGLD++GKTT + +LK Q N +PTIGF+ EK K ++
Sbjct: 14 LVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSS-----SLS 68
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVP 127
F ++D+ GQ + R LW+ Y + IIFVIDS+D RM K EL + + D + +P
Sbjct: 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
IL ANK DL +A+ ++ +LL L + + ++I A+ AI G+GL EG++ L
Sbjct: 129 ILFFANKMDLRDAVTSVKVSQLLCLENIKDKP-WHICASDAIKGEGLQEGVDWL 181
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 28 DSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87
D+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+ LR W++
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLE-----HRGFKLNIWDVGGQKSLRSYWRN 81
Query: 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIE 147
Y TDG+I+V+DS D +R ++ + EL + +LI ANKQDLP A+ I+
Sbjct: 82 YFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQ 141
Query: 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ L L + + H + IQ A+TG+ L GI+ L
Sbjct: 142 EALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWL 174
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+GG
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGLTS 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQD A
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ LGL L + + I T A G GL E L + LK R+
Sbjct: 124 XTSSEXANSLGLPALKDRK-WQIFKTSATKGTGLDEAXEWLVE-TLKSRQ 171
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 7/153 (4%)
Query: 3 KNSAAFFENLQASG--SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
+ S F LQ G S +V LGLD+AGKTT L+ LK D+ VPT+ E++
Sbjct: 17 RGSNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT- 75
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
G+ F +D+GG E+ R +WK+Y +GI+F++D D R+ E K+EL + +
Sbjct: 76 ----IAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTD 131
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLY 153
NVPILIL NK D +AI +++ ++ GLY
Sbjct: 132 ETISNVPILILGNKIDRTDAISEEKLREIFGLY 164
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+GG +
Sbjct: 25 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT-----IAGMTFTTFDLGGHIQA 79
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK D P AI
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 142 QIKQIEKLLGLY 153
+++ ++ GLY
Sbjct: 140 SEERLREMFGLY 151
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+GG +
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT-----IAGMTFTTFDLGGHIQA 82
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK D P AI
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 142 QIKQIEKLLGLY 153
+++ ++ GLY
Sbjct: 143 SEERLREMFGLY 154
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+GG +
Sbjct: 19 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT-----IAGMTFTTFDLGGGIQA 73
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK D P AI
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 142 QIKQIEKLLGLY 153
+++ ++ GLY
Sbjct: 134 SEERLREMFGLY 145
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 16/176 (9%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKV-KGQIGKCKGINFLIWD 74
+ + +VM GLD++GKTT + ++K Q + T+G+N E KG++ F ++D
Sbjct: 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVA------FTVFD 69
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND-------NFNVP 127
+GG +K R LW++Y D +IFV+DS+D R+ VK E+ +K+ D VP
Sbjct: 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP 129
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
L ANK D A ++ ++L L L H + I A+ + G G+HEG + L +
Sbjct: 130 FLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 8/150 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKV-KGQIGKCKGINFLIWDVGG 77
+ + ++GL +GKTT + + Q+ + +PT+GFN KV KG + IWD+GG
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNV------TIKIWDIGG 76
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
Q + R +W+ Y R + I+++ID+ D E++E + EL + +P+L+L NK+DL
Sbjct: 77 QPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATC 167
PNA+ KQ+ + + L + + + +C
Sbjct: 137 PNALDEKQLIEKMNLSAIQDREICCYSISC 166
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ LGLD+AGKTT L+ LK D+ PT E++ IG K F +D+GG +
Sbjct: 4 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA--IGNIK---FTTFDLGGHIQA 58
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R LWK Y +GI+F++D+ D ER +E ++EL + +VP +IL NK D PNA+
Sbjct: 59 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 118
Query: 142 QIKQIEKLLGL 152
++ LGL
Sbjct: 119 SEAELRSALGL 129
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 2 GKNSAAFFENLQAS-GSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
G + +F ++ AS G + H ++ LGLD+AGKTT L+ LK D+ PT E++
Sbjct: 3 GWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL 62
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
IG K F +D+GG + R LWK Y +GI+F++D+ D ER +E ++EL
Sbjct: 63 A--IGNIK---FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALF 117
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
+ +VP +IL NK D PNA+ ++ LGL
Sbjct: 118 NIAELKDVPFVILGNKIDAPNAVSEAELRSALGL 151
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKV-KGQIGKCKGINFLIWDVGG 77
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ KG + +WD+GG
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV------TIKLWDIGG 76
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
Q + R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DL
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATC 167
P A+ K++ + + L + + + +C
Sbjct: 137 PGALDEKELIEKMNLSAIQDREICCYSISC 166
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKV-KGQIGKCKGINFLIWDVGG 77
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ KG + +WD+GG
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV------TIKLWDIGG 85
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
Q + R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DL
Sbjct: 86 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATC 167
P A+ K++ + + L + + + +C
Sbjct: 146 PGALDEKELIEKMNLSAIQDREICCYSISC 175
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGF-------NCEKVKGQIGKCKGIN 69
+ ++ LG GKTT LYR KF+ T I F N + G GK ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD GQE+ R L ++ R G + + D T + V+ + + N N I+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 130 ILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DLP+ ++ +Q +L Y + T A TG + + + L LI+K
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIMK 199
Query: 188 K 188
+
Sbjct: 200 R 200
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
IV++G GK+ L R D++ L + TIG Q+ K I IWD GQE+
Sbjct: 10 IVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP-- 138
R + +Y R G + V D T E ++ + +K +++N + N+ IL++ NK DL
Sbjct: 70 YRAITSAYYRGAVGALLVYDITKKNSFENIE-KWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 139 ------NAIQIKQIEKL----LGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+A Q + EKL E N+ L H+ +NE+Y + KK
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVEL------------AFHQLLNEIYNVRQKK 176
Query: 189 R 189
+
Sbjct: 177 Q 177
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + I +WD GQE+
Sbjct: 9 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTIRLQLWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 141 IQIKQIEKLLGLYELNNMHL 160
Q+ E ELN M +
Sbjct: 127 RQVSIEEGERKAKELNVMFI 146
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + + +WD GQE+
Sbjct: 4 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTVRLQLWDTAGQER 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDLP 138
R L SY R + + V D T+V ++ I+ ++T + +D V I+++ NK DL
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD---VIIMLVGNKTDLA 119
Query: 139 NAIQIKQIEKLLGLYELNNMHL 160
+ Q+ E ELN M +
Sbjct: 120 DKRQVSIEEGERKAKELNVMFI 141
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKV-------KGQIGKCKGIN 69
+ ++ LG GKTT LYR KF+ T I F ++V G GK ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD G E+ R L ++ R G + + D T + V+ + + N N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 130 ILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DLP+ ++ +Q +L Y + T A TG + + + L LI+K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFE------TSAATGQNVEKSVETLLDLIMK 185
Query: 188 K 188
+
Sbjct: 186 R 186
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
GSS + I+++G GK+ L R D++ + + TIG + K+K K + +WD
Sbjct: 4 GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQLWD 62
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
GQE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK
Sbjct: 63 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNK 121
Query: 135 QDLPNAI----QIKQIEKLLGL 152
D+ + Q + + K LG+
Sbjct: 122 SDMETRVVTADQGEALAKELGI 143
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKV-------KGQIGKCKGIN 69
+ ++ LG GKTT LYR KF+ T I F ++V G GK ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD G E+ R L ++ R G + + D T + V+ + + N N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 130 ILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DLP+ ++ +Q +L Y + Y + T A TG + + + L LI+K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKY-----GIPYFE-TSAATGQNVEKSVETLLDLIMK 185
Query: 188 K 188
+
Sbjct: 186 R 186
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 70
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVK-QWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 70
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVK-QWLQEIDRYASENVNKLLVGNKSDL 126
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + + +WD GQE+
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTVRLQLWDTAGQER 75
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDLP 138
R L SY R + + V D T+ + I+ ++T + +D V I+++ NK DL
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD---VIIMLVGNKTDLS 132
Query: 139 NAIQIKQIEKLLGLYELNNMHL 160
+ Q+ E ELN M +
Sbjct: 133 DKRQVSTEEGERKAKELNVMFI 154
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y ++ + TIG + K++ + K + IWD GQE+
Sbjct: 12 LLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDF-KIRTISLENKTVKLQIWDTAGQER 70
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD + + VK + I+ I NV L++ NK DL
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVK-QWIQEIDRYAMENVNKLLVGNKCDL 126
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y N + TIG + K+K K + IWD GQE+
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF-KIKTVELDGKTVKLQIWDTAGQER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + SY R + GII V D TD E VK+ L + I V L++ NK DL +
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y N + TIG + K+K K + IWD GQE+
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF-KIKTVELDGKTVKLQIWDTAGQER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + SY R + GII V D TD E VK+ L + I V L++ NK DL +
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y N + TIG + K+K K + IWD GQE+
Sbjct: 24 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF-KIKTVELDGKTVKLQIWDTAGQER 82
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + SY R + GII V D TD E VK+ L + I V L++ NK DL +
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWL-QEIDRYATSTVLKLLVGNKCDLKD 140
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 2 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 60
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTT 118
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + + +WD GQE+
Sbjct: 5 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTVRLQLWDTAGQER 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R L SY R + + V D T++ ++ + I ++ +V I+++ NK DL +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171
QI IE+ G + + +I+ T A TG
Sbjct: 123 RQIT-IEE--GEQRAKELSVMFIE-TSAKTG 149
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 77
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + I +WD G E+
Sbjct: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTIRLQLWDTAGLER 74
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 141 IQIKQIEKLLGLYELNNMHL 160
Q+ E ELN M +
Sbjct: 134 RQVSIEEGERKAKELNVMFI 153
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 94
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 28 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 86
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 9 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT L+R D + +T + TIG + K++ K I IWD GQE+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF-KIRTIELDGKRIKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GI+ V D T+ + + ++ I+ I+ + + +V +IL NK D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 141 IQIKQ 145
Q+ +
Sbjct: 127 RQVSK 131
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKV-------KGQIGKCKGIN 69
+ ++ LG GKTT LYR KF+ T I F ++V G GK ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD G E+ R L ++ R G + D T + V+ + N N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 130 ILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DLP+ ++ +Q +L Y + T A TG + + + L LI K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFE------TSAATGQNVEKSVETLLDLIXK 185
Query: 188 K 188
+
Sbjct: 186 R 186
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 59
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 60 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTT 117
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT L+R D + +T + TIG + K++ K I IWD GQE+
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF-KIRTIELDGKRIKLQIWDTAGQER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GI+ V D T+ + + ++ I+ I+ + + +V +IL NK D+ +
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 141 IQIKQ 145
Q+ +
Sbjct: 129 RQVSK 133
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKV-------KGQIGKCKGIN 69
+ ++ LG GKTT LYR KF+ T I F ++V G GK ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD G E+ R L ++ R G + D T + V+ + N N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 130 ILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DLP+ ++ +Q +L Y + T A TG + + + L LI K
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFE------TSAATGQNVEKSVETLLDLIXK 185
Query: 188 K 188
+
Sbjct: 186 R 186
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 19 LLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 77
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 133
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + + +WD G E+
Sbjct: 9 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTVRLQLWDTAGLER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 141 IQIKQIEKLLGLYELNNMHL 160
Q+ E ELN M +
Sbjct: 127 RQVSIEEGERKAKELNVMFI 146
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S + I+++G GK+ L R D++ + + TIG + K+K K + IWD
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSD 119
Query: 137 LPNAI 141
+ +
Sbjct: 120 METRV 124
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIW 73
S S + I+++G GK+ L R D++ + + TIG + K+K K + +W
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQLW 74
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GQE+ R + +Y R GII V D TD +K + KT+ + N +L++ N
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGN 133
Query: 134 KQDLP----NAIQIKQIEKLLGL 152
K D+ A Q + + K LG+
Sbjct: 134 KSDMETRVVTADQGEALAKELGI 156
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG S GKT+ + R +D + NT TIG + K + + + +WD G E+
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS-KTMYLEDRTVRLQLWDTAGLER 77
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 141 IQIKQIEKLLGLYELNNMHL 160
Q+ E ELN M +
Sbjct: 137 RQVSIEEGERKAKELNVMFI 156
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S I+++G GK+ L R D++ + + TIG + K+K K + IWD
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSD 119
Query: 137 ----LPNAIQIKQIEKLLGL 152
+ A Q + + K LG+
Sbjct: 120 XETRVVTADQGEALAKELGI 139
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIW 73
S + IV+ G + GK++ L RL +++ N T+G + + +K I + +W
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ-MKTLIVDGERTVLQLW 82
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GQE+ R + KSY R DG++ + D T + ++ E + I++ + VPI+++ N
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGN 141
Query: 134 KQDLPN 139
K D+ +
Sbjct: 142 KADIRD 147
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S I+++G GK+ L R D++ + + TIG + K+K K + +WD
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQLWDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSD 119
Query: 137 ----LPNAIQIKQIEKLLGL 152
+ A Q + + K LG+
Sbjct: 120 XETRVVTADQGEALAKELGI 139
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+++G S GKT+ L+R D + V T+G + KVK K I IWD GQE+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIYRNDKRIKLQIWDTAGQER 66
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + +Y R G I + D T+ E V+ + IK N +L++ NK D+ +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMED 124
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + K++ K I IWD GQE+
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIRTIELDGKTIKLQIWDTAGQER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + SY R GII V D TD E VK + ++ I + NV L++ K DL
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G GK+ L R +++ L + TIG Q+ K I IWD GQE+
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQER 66
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL +
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRH- 124
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG----INELYQLILKKR 189
++ ++ E NN L +I+ T A+ + E + E+Y+++ +K+
Sbjct: 125 LRAVPTDEARAFAEKNN--LSFIE-TSALDSTNVEEAFKNILTEIYRIVSQKQ 174
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 20 VHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKV-------KGQIGKCKGIN 69
+ + LG GKT+ LY+ KF+ T I F ++V G +G+ + I+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD G E+ R L ++ R G + + D T+ + V+ + + + + N I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ NK DL + +K+ E EL + T A G + I L LI+K+
Sbjct: 132 LCGNKSDLEDQRAVKEEEAR----ELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLK---FDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
+++ I+++G GK++ L R FD L + F + + K K IWD
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---LAIWD 70
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI-----ELIKTIKNNDNFNVPIL 129
GQE+ R L SY R G+I V D T R VK+ EL ND N
Sbjct: 71 TAGQERFRTLTPSYYRGAQGVILVYDVT--RRDTFVKLDNWLNELETYCTRNDIVNX--- 125
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
++ NK D N +++++ GL +I+A+ A T DG+ EL + I++
Sbjct: 126 LVGNKIDKEN----REVDRNEGLKFARKHSXLFIEAS-AKTCDGVQCAFEELVEKIIQTP 180
Query: 190 KLQKTNKMN 198
L ++ N
Sbjct: 181 GLWESENQN 189
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLI 72
S + S +V+LG GKT+ + R +++ + + T+G + K IG K +N I
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG-KRVNLAI 59
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
WD GQE+ L Y R ++G I V D TD + ++VK +K ++ + + I+
Sbjct: 60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVG 118
Query: 133 NKQDLP 138
NK DL
Sbjct: 119 NKIDLE 124
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGIN 69
+ S + S +V+LG GKT+ + R KF+ T F +K+ IG K +N
Sbjct: 14 RGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKL--NIGG-KRVN 70
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
IWD GQE+ L Y R ++G I V D TD + ++VK +K ++ + +
Sbjct: 71 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLC 129
Query: 130 ILANKQDL 137
I+ NK DL
Sbjct: 130 IVGNKIDL 137
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 10 ENLQASGSSS--VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCK 66
ENL G+ ++++G S GKT+ L+R D + V T+G + KVK K
Sbjct: 12 ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF-KVKTVYRHEK 70
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+ IWD GQE+ R + +Y R G I + D T+ E V+ + IK N
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNA 129
Query: 127 PILILANKQDL 137
++++ NK D+
Sbjct: 130 QVILVGNKCDM 140
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 22 IVMLGLDSAGKTTALYRLKFD----QYLNTV------PTIGFNCEKVKGQIGKCKGINFL 71
++++G GK++ L R + Y+ T+ T+ N EKVK QI
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI--------- 62
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
WD GQE+ R + +Y R T G+I V D T E VK L + +N D +V +++
Sbjct: 63 -WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCRILV 119
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
NK D P +++ + Y+ + T A + E N + +L+L+ +K
Sbjct: 120 GNKNDDPE----RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINF 70
S + S +V+LG GKT+ + R KF+ T F +K+ IG K +N
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKL--NIGG-KRVNL 57
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
IWD GQE+ L Y R ++G I V D TD + ++VK +K ++ + + I
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCI 116
Query: 131 LANKQDLP 138
+ NK DL
Sbjct: 117 VGNKIDLE 124
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G S GKT+ L+R D + V T+G + KVK K I IWD GQE+
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTVYRHDKRIKLQIWDTAGQER 83
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
R + +Y R G + + D + E V+ + IK N ++++ NK DL +
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLED 141
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G GK+ L R +++ L + TIG Q+ K I IWD GQE+
Sbjct: 23 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQER 81
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 137
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 11 NLQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLN-TVPTIG--FNCEKVKGQIGKC 65
++ A+G+ S++ +V+LG AGK++ + R DQ++ TIG F + +
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K F IWD GQE+ L Y R I V D T+ E K + ++ ++ N N
Sbjct: 62 K---FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPN 117
Query: 126 VPILILANKQDLPNAIQI 143
+ + + NK DL +A ++
Sbjct: 118 MVMALAGNKSDLLDARKV 135
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ +LG GK++ ++R D + N PTIG F + V+ Q K FLIWD GQ
Sbjct: 8 VCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK---FLIWDTAGQ 64
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L Y R + I V D T E +K ++ ++ + ++ + I NK DL
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLT 123
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATC--AITGDGLHEGINELYQLILKK 188
+ ++ +E+ Y +++H +++ + AI INEL+ I ++
Sbjct: 124 DVREV--MERDAKDYA-DSIHAIFVETSAKNAI-------NINELFIEISRR 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG GKT+ ++R D+Y TIG + + + K +WD GQE+
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANKQDL 137
+ L ++ R D + V D T+ E +K E + N P +IL NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 138 PNAIQI---KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+ +I K ++L L ++ L+ A AI D E I
Sbjct: 131 EESKKIVSEKSAQELAK--SLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G GK+ L R +++ L + TIG Q+ K I IWD GQE+
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQER 90
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 146
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V LG + GKT+ + R +D + N TIG + + + + +WD GQE+
Sbjct: 4 LVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGP-VRLQLWDTAGQER 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
R L SY R + I V D T+ + E + I+ I N +V I ++ NK DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL 118
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 61 QIGKCKGI--NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST------DVERMEEVKI 112
IG+ KG F ++ V GQ K R DGI+FV DS + E M ++
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE 124
Query: 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172
L + D+ VPI+I NK+DLP+A+ ++ + + ++ + + A G
Sbjct: 125 NLAEYGLTLDD--VPIVIQVNKRDLPDALPVEMVRAV-----VDPEGKFPVLEAVATEGK 177
Query: 173 GLHEGINELYQLILKK 188
G+ E + E+ +L+L +
Sbjct: 178 GVFETLKEVSRLVLAR 193
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+++G S GKT+ L+R D + V T+G + KVK K I IWD G E+
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIYRNDKRIKLQIWDTAGLER 69
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
R + +Y R G I D T+ E V+ + IK N +L++ NK D
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCD 124
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 22 IVMLGLDSAGKTTALYRLK---FDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V++G S GKT + R K F + + + F + ++ Q K + IWD GQ
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTAGQ 88
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R + +SY R +G I D T V I+ ++ N+ L++ NK DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 139 NAIQIKQIE 147
++ E
Sbjct: 148 ELREVSLAE 156
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+++G GK+ L++ KF Q N + F V +G K + IWD GQ
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV--NVGG-KTVKLQIWDTAGQ 84
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R + +SY R G + V D T E + L + + N+ +++ NK+DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA-RTLASPNIVVILCGNKKDLD 143
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ +E E M L T A+TG+ + E + + IL K
Sbjct: 144 PEREVTFLEASRFAQENELMFL----ETSALTGENVEEAFLKCARTILNK 189
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F ++ + F + V C + F IWD
Sbjct: 10 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 63
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 64 AGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 122
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 123 DLANKRAVDFQEAQS----YADDNSLLF--XETSAKTS----XNVNEIFXAIAKK 167
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F +Y + F + V C + F IWD
Sbjct: 11 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSV------CLDDTTVKFEIWDT 64
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + ++ I + NK
Sbjct: 65 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKT-WVKELQRQASPSIVIALAGNKA 123
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTN 195
DL N ++ + E+ + N++ A A+ +N+L+ I K KL K+
Sbjct: 124 DLANK-RMVEYEEAQAYADDNSLLFMETSAKTAMN-------VNDLFLAIAK--KLPKSE 173
Query: 196 KMN 198
N
Sbjct: 174 PQN 176
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ ++++G GKT+ + R D + T+G + K+K + K I IWD GQ
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF-KIKTVELRGKKIRLQIWDTAGQ 85
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ + +Y R GII V D T E +++ + +K I + + +L++ NK D
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 139 NAIQIKQ 145
+I +
Sbjct: 145 TDREITR 151
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F +Y + F + V C + F IWD
Sbjct: 8 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTV------CLDDTTVKFEIWDT 61
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ + K +K ++ + N+ I + NK
Sbjct: 62 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK-NWVKELQRQASPNIVIALAGNKA 120
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL + A++ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 121 DLASKRAVEFQEAQA----YADDNSLLF--METSAKTA----MNVNEIFMAIAKK 165
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFL 71
+ S S I+++G + GKT YR ++ + T TIG + + I + I
Sbjct: 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQ 72
Query: 72 IWDVGGQEKLR-PLWKSYTRCTDGIIFVIDSTDVER-------MEEVKIELIKTIKNNDN 123
+WD GQE+ R + + Y R ++FV D T++ +EE K L+
Sbjct: 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN------ 126
Query: 124 FNVPILILANKQDLPNAIQI 143
++P +++ NK DL +AIQ+
Sbjct: 127 -DIPRILVGNKCDLRSAIQV 145
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
IV++G GK+ L R +++ +++ TIG +I + K I IWD GQE+
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQER 74
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R G + V D + E L + +N D+ NV + ++ NK DL +
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD-NVAVGLIGNKSDLAHL 133
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ E + N L+ T A+ + + + EL I +K
Sbjct: 134 RAVPTEES--KTFAQENQLLF--TETSALNSENVDKAFEELINTIYQK 177
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINF 70
L + S I+++G + GKT YR ++ + T TIG + + I + I
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKI 80
Query: 71 LIWDVGGQEKLR-PLWKSYTRCTDGIIFVIDSTDVER-------MEEVKIELIKTIKNND 122
+WD GQE+ R + + Y R ++FV D T+ +EE K L+
Sbjct: 81 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAN----- 135
Query: 123 NFNVPILILANKQDLPNAIQI 143
++P +++ NK DL +AIQ+
Sbjct: 136 --DIPRILVGNKCDLRSAIQV 154
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFL 71
S + + +LG GK++ ++R D + N PTIG F + V+ Q K FL
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK---FL 58
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
IWD G E+ R L Y R + I V D T E +K ++ ++ + ++ + I
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIA 117
Query: 132 ANKQDLPNAIQIKQ 145
NK DL + ++ +
Sbjct: 118 GNKCDLTDVREVME 131
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F +Y + F + V C + F IWD
Sbjct: 6 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTV------CLDDTTVKFEIWDT 59
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ + K +K ++ + N+ I + NK
Sbjct: 60 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK-NWVKELQRQASPNIVIALAGNKA 118
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL + A++ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 119 DLASKRAVEFQEAQA----YADDNSLLF--METSAKTA----MNVNEIFMAIAKK 163
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K I IWD GQE R + +SY R G + V D T + + L + + + N N
Sbjct: 57 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWL-EDARQHSNSN 115
Query: 126 VPILILANKQDLPNAIQIKQIE 147
+ I+++ NK DL + ++K+ E
Sbjct: 116 MVIMLIGNKSDLESRREVKKEE 137
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F ++ + F + V C + F IWD
Sbjct: 10 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 63
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 64 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 122
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 123 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG + GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 39/192 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL-------- 71
+ +++LG GKT+ + +QY+N +K Q G +FL
Sbjct: 9 LKVIILGDSGVGKTSLM-----NQYVN---------KKFSNQYKATIGADFLTKEVMVDD 54
Query: 72 ------IWDVGGQEKLRPLWKSYTRCTDGIIFVIDST---DVERMEEVKIELIKTIKNND 122
IWD GQE+ + L ++ R D + V D T + ++ + E + D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
N P ++L NK DL N Q+ Y NN+ + A AI + + +
Sbjct: 115 PENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAI-------NVEQAF 166
Query: 183 QLILKKRKLQKT 194
Q I + Q+T
Sbjct: 167 QTIARNALKQET 178
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K I IWD GQE R + +SY R G + V D T E + ++ + + + N
Sbjct: 68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSN 126
Query: 126 VPILILANKQDLPNAIQIKQIE 147
+ I+++ NK DL + +K+ E
Sbjct: 127 MVIMLIGNKSDLESRRDVKREE 148
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 39/192 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL-------- 71
+ +++LG GKT+ + +QY+N +K Q G +FL
Sbjct: 9 LKVIILGDSGVGKTSLM-----NQYVN---------KKFSNQYKATIGADFLTKEVMVDD 54
Query: 72 ------IWDVGGQEKLRPLWKSYTRCTDGIIFVIDST---DVERMEEVKIELIKTIKNND 122
IWD GQE+ + L ++ R D + V D T + ++ + E + D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
N P ++L NK DL N Q+ Y NN+ + A AI + + +
Sbjct: 115 PENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAI-------NVEQAF 166
Query: 183 QLILKKRKLQKT 194
Q I + Q+T
Sbjct: 167 QTIARNALKQET 178
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 61 QIGKCKGI--NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST------DVERMEEVKI 112
IG+ KG F ++ V GQ K R DGI+FV DS + E +
Sbjct: 65 DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRE 124
Query: 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172
L + D+ VPI+I NK+DLP+A+ ++ + + ++ + + A G
Sbjct: 125 NLAEYGLTLDD--VPIVIQVNKRDLPDALPVEXVRAV-----VDPEGKFPVLEAVATEGK 177
Query: 173 GLHEGINELYQLILKK 188
G+ E + E+ +L+L +
Sbjct: 178 GVFETLKEVSRLVLAR 193
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFL 71
+ S + + +LG GK++ + R D + N PTIG + G + FL
Sbjct: 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFL 75
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
IWD GQE+ L Y R + + V D T + +K + +K +K + N+ + I
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIA 134
Query: 132 ANKQDL 137
NK DL
Sbjct: 135 GNKCDL 140
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKC---KGINFLIWDV 75
+V+LG GK++ + R +F ++ + F + V C + F IWD
Sbjct: 9 LVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV------CLDDTTVKFEIWDT 62
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE+ L Y R I V D T+ E K +K ++ + N+ I + NK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKA 121
Query: 136 DLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
DL N A+ ++ + Y +N L+ T A T +NE++ I KK
Sbjct: 122 DLANKRAVDFQEAQS----YADDNSLLF--METSAKTS----MNVNEIFMAIAKK 166
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 64
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 65 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 118
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 184 LILKKRKLQKTN 195
L+ R+ +K +
Sbjct: 179 AALQARRGKKKS 190
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
GS+ +V++G D GK+ +L + +++ PTI + K G+ ++ L D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL--D 58
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILA 132
GQE+ + Y R +G + V + + E++ E IK +K++++ VP++++
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMVLVG 116
Query: 133 NKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
NK DLP+ + KQ + L Y + +I+ T A T G+ + L + I K ++
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIP-----FIE-TSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEV-KIEL-IKTIKNNDNFNVPIL 129
I D GQE+ + + Y R +G + V TD EE+ K + I +K+ D F P++
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF--PMI 114
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ NK DL + Q+ Q E G + + Y++A+ I + + + +EL ++I K
Sbjct: 115 LIGNKADLDHQRQVTQEE---GQQLARQLKVTYMEASAKIRMN-VDQAFHELVRVIRK 168
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 39/192 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL-------- 71
+ +++LG GKT+ + +QY+N +K Q G +FL
Sbjct: 9 LKVIILGDSGVGKTSLM-----NQYVN---------KKFSNQYKATIGADFLTKEVMVDD 54
Query: 72 ------IWDVGGQEKLRPLWKSYTRCTDGIIFVIDST---DVERMEEVKIELIKTIKNND 122
IWD GQE+ + L ++ R D + V D T + ++ + E + D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
N P ++L NK D N Q+ Y NN+ + A AI + + +
Sbjct: 115 PENFPFVVLGNKIDFENR-QVATKRAQAWCYSKNNIPYFETSAKEAI-------NVEQAF 166
Query: 183 QLILKKRKLQKT 194
Q I + Q+T
Sbjct: 167 QTIARNALKQET 178
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 12 LQASGSSSVH-IVMLGLDSAGKTTALYRL---KFD-QYLNTVPTIGFNCE-KVKGQIGKC 65
L ++G SS+ I++LG GK++ + R KFD Q +T+ N + +V G
Sbjct: 3 LGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHF--- 59
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF---VIDSTDVERMEEVKIELIKTIKNND 122
+ IWD GQE+ R L + R +D + V DS + + K E I +
Sbjct: 60 --VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 117
Query: 123 NFNVPILILANKQDL 137
+ P +IL NK D+
Sbjct: 118 PESFPFVILGNKTDI 132
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 22/135 (16%)
Query: 16 GSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGIN 69
GS+++ +V++G + GKT L DQ+ VPT+ N +V G K +
Sbjct: 4 GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVE 58
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNF 124
+WD GQE +LRPL SY TD I+ F IDS D +E + + +K+
Sbjct: 59 LALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CP 112
Query: 125 NVPILILANKQDLPN 139
NVPI+++ NK+DL N
Sbjct: 113 NVPIILVGNKKDLRN 127
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 184 LILKKRKLQKTN 195
L+ R+ +K +
Sbjct: 177 AALQARRGKKKS 188
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 64
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 65 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 118
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 184 LILKKRKLQKTN 195
L+ R+ +K +
Sbjct: 179 AALQARRGKKKS 190
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 11 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 65
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 66 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 119
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 184 LILKKRKLQKTN 195
L+ R+ +K +
Sbjct: 180 AALQARRGKKKS 191
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 20/137 (14%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKC 65
ENL +V++G + GKT L D++ VPT+ N +V G
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDG----- 70
Query: 66 KGINFLIWDVGGQE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKN 120
K + +WD GQE +LRPL SY TD I+ F +DS D +E + + + +K+
Sbjct: 71 KQVELALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSVDSPD--SLENIPEKWVPEVKH 125
Query: 121 NDNFNVPILILANKQDL 137
NVPI+++ANK+DL
Sbjct: 126 F-CPNVPIILVANKKDL 141
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIW 73
A SS ++ +GL +GKT RL QY +T +I + K + +G + +
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK--VNNNRGNSLTLI 59
Query: 74 DVGGQEKLR-PLWKSYTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNF-NVPILI 130
D+ G E LR L + ++FV+DS +R +++V L + + ++ N P L+
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 131 LA-NKQDLPNAIQIKQIEKLLGLYELNNMHL 160
+A NKQD+ A K I++ L ELN + +
Sbjct: 120 IACNKQDIAMAKSAKLIQQQLE-KELNTLRV 149
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 23 VMLGLDSAGKTTALYRLKFDQYLNTVP-TIG--FNCE--KVKGQIGKCKGINFLIWDVGG 77
+++G GK+ L++ +++ P TIG F +V GQ I IWD G
Sbjct: 19 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-----KIKLQIWDTAG 73
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R G + V D T + L +N N N I+++ NK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADL 132
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
G + +V++G D GK+ +L + +++ PTI + K G+ ++ L D
Sbjct: 1 GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL--D 58
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILA 132
GQE+ + Y R +G + V + + E++ E IK +K++++ VP++++
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMVLVG 116
Query: 133 NKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
NK DLP+ + KQ + L Y + +I+ T A T G+ + L + I K ++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIP-----FIE-TSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 9 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 63
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 64 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 117
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 118 NKKDLRN 124
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 10 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 64
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 65 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 118
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 119 NKKDLRN 125
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K + IWD GQE+ R + +SY R G + V D T E + + + + N
Sbjct: 58 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQN 116
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ I++ NK+DL ++ +E E M L T A+TG+ + E + + I
Sbjct: 117 IVIILCGNKKDLDADREVTFLEASRFAQENELMFL----ETSALTGEDVEEAFVQCARKI 172
Query: 186 LKK 188
L K
Sbjct: 173 LNK 175
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 184 LILKKRKLQK 193
L+ R+ +K
Sbjct: 177 AALQARRGKK 186
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K + IWD GQE+ R + +SY R G + V D T E + + + + N
Sbjct: 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQN 115
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ I++ NK+DL ++ +E E M L T A+TG+ + E + + I
Sbjct: 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFL----ETSALTGENVEEAFVQCARKI 171
Query: 186 LKK 188
L K
Sbjct: 172 LNK 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
++++G GKT L R K +L + T+G + + K + +WD GQE
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK-VKLQMWDTAGQE 71
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R + +Y R ++ + D T+ + ++ L + I +V +++L NK D +
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDVALMLLGNKVDSAH 130
Query: 140 AIQIKQI--EKLLGLYELNNM 158
+K+ EKL Y L M
Sbjct: 131 ERVVKREDGEKLAKEYGLPFM 151
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDLPNAIQIKQ---------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183
NK+DL N ++ ++ G N + + A T DG+ E +
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 184 LILKKRKLQKTN 195
L+ R+ +K +
Sbjct: 177 AALQARRGKKKS 188
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDG-----KQVELALWDTAG 82
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 83 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHFXP-NVPIILVG 136
Query: 133 NKQDL 137
NK+DL
Sbjct: 137 NKKDL 141
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 9 LVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 63
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 64 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 117
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 118 NKKDLRN 124
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRL---KFD-QYLNTVPTIGFNCE-KVKGQIGKCKGI 68
A SS +++LG GK++ + R KFD Q +T+ N + +V G +
Sbjct: 4 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF-----V 58
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIF---VIDSTDVERMEEVKIELIKTIKNNDNFN 125
IWD GQE+ R L + R +D + V DS + + K E I + +
Sbjct: 59 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 118
Query: 126 VPILILANKQDL 137
P +IL NK D+
Sbjct: 119 FPFVILGNKIDI 130
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRL---KFD-QYLNTVPTIGFNCE-KVKGQIGKCKGI 68
A SS +++LG GK++ + R KFD Q +T+ N + +V G +
Sbjct: 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF-----V 56
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIF---VIDSTDVERMEEVKIELIKTIKNNDNFN 125
IWD GQE+ R L + R +D + V DS + + K E I + +
Sbjct: 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116
Query: 126 VPILILANKQDL 137
P +IL NK D+
Sbjct: 117 FPFVILGNKIDI 128
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT------------VPTIGFNCEKVKGQIGKCKGIN 69
IV++G GKT + R F Q L + T+ N EKVK QI
Sbjct: 29 IVLIGNAGVGKTCLVRR--FTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI------- 79
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE+ R + +SY R + +I D T E + E ++ I+ + V +
Sbjct: 80 ---WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITV 135
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166
++ NK DL ++ Q ++ E +M YY++ +
Sbjct: 136 LVGNKIDLAERREVSQ-QRAEEFSEAQDM--YYLETS 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 39/192 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL-------- 71
+ +++LG GKT+ + +QY+N +K Q G +FL
Sbjct: 9 LKVIILGDSGVGKTSLM-----NQYVN---------KKFSNQYKATIGADFLTKEVMVDD 54
Query: 72 ------IWDVGGQEKLRPLWKSYTRCTDGIIFVIDST---DVERMEEVKIELIKTIKNND 122
IWD G E+ + L ++ R D + V D T + ++ + E + D
Sbjct: 55 RLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
N P ++L NK DL N Q+ Y NN+ + A AI + + +
Sbjct: 115 PENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAI-------NVEQAF 166
Query: 183 QLILKKRKLQKT 194
Q I + Q+T
Sbjct: 167 QTIARNALKQET 178
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
+S+ +V+LG + GK++ + R + + N PTIG + I + + F IWD
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQE+ L Y R + V D T + + + +K + + ++ I ++ NK D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKID 119
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 28 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDG-----KQVELALWDTAG 82
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 83 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 136
Query: 133 NKQDL 137
NK+DL
Sbjct: 137 NKKDL 141
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
I D GQE+ + + Y R G + V D + EV + ++ D + P++++
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120
Query: 132 ANKQDLPNAIQIKQIE-KLLGLYELNNMHLYYIQATCAITGDGLHEGINELY-QLILKKR 189
NK DL + Q+ + E G + H+ Y +A+ L ++E + QL+ R
Sbjct: 121 GNKADLESQRQVPRSEASAFGA----SHHVAYFEASAK-----LRLNVDEAFEQLVRAVR 171
Query: 190 KLQK 193
K Q+
Sbjct: 172 KYQE 175
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 23 VMLGLDSAGKTTALYRLKFDQYLNTVP-TIG--FNCE--KVKGQIGKCKGINFLIWDVGG 77
+++G GK+ L++ +++ P TIG F +V GQ I IWD G
Sbjct: 34 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-----KIKLQIWDTAG 88
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
Q + R + +SY R G + V D T + L +N N N I+++ NK DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADL 147
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 6 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 60
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 61 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 114
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 115 NKKDLRN 121
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 6 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 60
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 61 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 114
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 115 NKKDLRN 121
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 17 SSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
S ++H ++M+G GK+ + +D+++ PT + K G+ I+ L D
Sbjct: 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL--D 72
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E + ++ ++ NVP L++ NK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 135 QDLPNAIQI 143
DL + Q+
Sbjct: 133 SDLEDKRQV 141
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 17 SSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
S ++H ++M+G GK+ + +D+++ PT + K G+ I+ L D
Sbjct: 3 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL--D 60
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E + ++ ++ NVP L++ NK
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 135 QDLPNAIQI 143
DL + Q+
Sbjct: 121 SDLEDKRQV 129
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 17 SSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
S ++H ++M+G GK+ + +D+++ PT + K G+ I+ L D
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL--D 58
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E + ++ ++ NVP L++ NK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 135 QDLPNAIQI 143
DL + Q+
Sbjct: 119 SDLEDKRQV 127
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 17 SSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S ++H ++M+G GK+ + +D+++ + + K + + + I D
Sbjct: 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDT 69
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQE + +Y R +G + V T++E + ++ ++ NVP L++ NK
Sbjct: 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129
Query: 136 DLPNAIQI 143
DL + Q+
Sbjct: 130 DLEDKRQV 137
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE + RPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRARPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++++ VP++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMV 113
Query: 130 ILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DLP+ + KQ + L Y + +I+ T A T G+ + L + I K
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIP-----FIE-TSAKTRQGVDDAFYTLVREIRKH 167
Query: 189 RK 190
++
Sbjct: 168 KE 169
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++++ VP++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMV 113
Query: 130 ILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DLP+ + KQ + L Y + +I+ T A T G+ + L + I K
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIP-----FIE-TSAKTRQGVDDAFYTLVREIRKH 167
Query: 189 RK 190
++
Sbjct: 168 KE 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ +V++G + GK++ + R + TIG + + + Q+ + + ++WD G
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAG 63
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ + K+Y R + V +TD E E + K + ++P ++ NK DL
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDL 121
Query: 138 PNAIQIKQIEKLLGLYELNNMHLY 161
+ IK E+ GL + + Y
Sbjct: 122 LDDSCIKN-EEAEGLAKRLKLRFY 144
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
+ D GQE+ + + Y R DG + V TD E V +LI +K+ ++F P++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMI 127
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ANK DL + ++++ + G ++ YI+ + + + ++L ++I ++
Sbjct: 128 LVANKVDL---MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + L + I ++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDAFYTLVREI-RQ 165
Query: 189 RKLQKTNKMNK 199
KL+K N ++
Sbjct: 166 HKLRKLNPPDE 176
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 8 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDG-----KQVELALWDTAG 62
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
QE +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 63 QEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 116
Query: 133 NKQDL 137
NK+DL
Sbjct: 117 NKKDL 121
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
+ D GQE+ + + Y R DG + V TD E V +LI +K+ ++F P++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMI 127
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ANK DL + ++++ + G ++ YI+ + + + ++L ++I ++
Sbjct: 128 LVANKVDL---MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
+ D GQE+ + + Y R DG + V TD E V +LI +K+ ++F P++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMI 127
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ANK DL + ++++ + G ++ YI+ + + + ++L ++I ++
Sbjct: 128 LVANKVDL---MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K + IWD G E+ R + +SY R G + V D T E + + + + N
Sbjct: 55 KYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQN 113
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ I++ NK+DL ++ +E E M L T A+TG+ + E + + I
Sbjct: 114 IVIILCGNKKDLDADREVTFLEASRFAQENELMFL----ETSALTGEDVEEAFVQCARKI 169
Query: 186 LKK 188
L K
Sbjct: 170 LNK 172
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + ++ + E IK +K++D+ VP++
Sbjct: 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD--VPMV 130
Query: 130 ILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG----INELYQL 184
++ NK DLP + KQ +L Y + + T A T G+ + + E+ Q
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAKSYGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184
Query: 185 ILKK 188
+KK
Sbjct: 185 RMKK 188
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPIL 129
+ D GQE+ + + Y R DG + V TD E V +LI +K+ ++F P++
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMI 122
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ANK DL + ++++ + G ++ YI+ + + + ++L ++I ++
Sbjct: 123 LVANKVDL---MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G D GK+ +L + +++ PTI + K G+ ++ L D GQE+
Sbjct: 6 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL--DTAGQEE 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDL- 137
+ Y R +G + V + + E++ E IK +K++D+ VP++++ NK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMVLVGNKCDLA 121
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
++ +Q + L Y + YI+ T A T G+ + Y L+ + R+
Sbjct: 122 ARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GGQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV-KGQIGKCKGI 68
ENL GS I+++GL +GK++ + ++ F + + K+ K I +
Sbjct: 12 ENLYFQGSKP-RILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNSSFV 69
Query: 69 NFLIWDVGGQ-EKLRPL--WKSYTRCTDGIIFVIDSTD--VERMEEVKIELIKTIKNNDN 123
NF IWD GQ + P ++ R T +I+VID+ D +E + + I + K K N +
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD 129
Query: 124 FNVPILI 130
N + I
Sbjct: 130 MNFEVFI 136
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDV 75
S S I +LG S GK++ + Q++++ PTI K+ G+ + + D
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLV--DT 59
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQ++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+
Sbjct: 60 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 119
Query: 136 DL 137
DL
Sbjct: 120 DL 121
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + L + I ++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDAFYTLVREI-RQ 165
Query: 189 RKLQK 193
KL+K
Sbjct: 166 HKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + L + I ++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDAFYTLVREI-RQ 165
Query: 189 RKLQK 193
KL+K
Sbjct: 166 HKLRK 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWDVGG 77
+V++G + GKT L DQ+ VPT+ N +V G K + +WD G
Sbjct: 11 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTAG 65
Query: 78 QE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132
E +LRPL SY TD I+ F IDS D +E + + +K+ NVPI+++
Sbjct: 66 LEDYDRLRPL--SYPD-TDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVG 119
Query: 133 NKQDLPN 139
NK+DL N
Sbjct: 120 NKKDLRN 126
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDV 75
S S I +LG S GK++ + Q++++ PTI K+ G+ + + D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV--DT 61
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQ++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121
Query: 136 DL 137
DL
Sbjct: 122 DL 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDV 75
S S I +LG S GK++ + Q++++ PTI K+ G+ + + D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV--DT 61
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GQ++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121
Query: 136 DL 137
DL
Sbjct: 122 DL 123
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++++ VP++
Sbjct: 73 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMV 130
Query: 130 ILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DLP+ + KQ + L Y + +I+ T A T G+ + L + I K
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLARSYGIP-----FIE-TSAKTRQGVDDAFYTLVREIRKH 184
Query: 189 RK 190
++
Sbjct: 185 KE 186
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 62 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 119
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 120 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 170
Query: 189 RK 190
R+
Sbjct: 171 RQ 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 22 IVMLGLDSAGKTTALYRL---KFD-QYLNTVPTIGFNCE-KVKGQIGKCKGINFLIWDVG 76
+++LG GK++ + R KFD Q +T+ N + +V G+ + IWD
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRF-----VTLQIWDTA 64
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEV---KIELIKTIKNNDNFNVPILILAN 133
GQE+ + L + R D + D + E + + E I D + P ++L N
Sbjct: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
Query: 134 KQD 136
K D
Sbjct: 125 KVD 127
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 17 SSSVH-IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWD 74
S ++H ++M+G GK+ + +D+++ PT + K G+ I+ L D
Sbjct: 3 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL--D 60
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
G E + +Y R +G + V T++E + ++ ++ NVP L++ NK
Sbjct: 61 TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 135 QDLPNAIQI 143
DL + Q+
Sbjct: 121 SDLEDKRQV 129
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREF 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 117
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 168
Query: 189 RK 190
R+
Sbjct: 169 RQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 117
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 168
Query: 189 RK 190
R+
Sbjct: 169 RQ 170
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDG---IIFVIDSTDVER--MEEVK-------IE 113
K I F + DVGGQ R W +C DG I+F++ S++ ++ ME+ + +
Sbjct: 197 KKIPFKMVDVGGQRSQRQKW---FQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMN 253
Query: 114 LIKTIKNND-NFNVPILILANKQDL 137
+ +TI NN FNV I++ NK DL
Sbjct: 254 IFETIVNNKLFFNVSIILFLNKMDL 278
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 61 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 118
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 119 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 169
Query: 189 RK 190
R+
Sbjct: 170 RQ 171
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDLP-NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAGRTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
S I +LG S GK++ + Q++++ PTI K+ G+ + + D G
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV--DTAG 58
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
Q++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+DL
Sbjct: 59 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 118
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ VPT+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K +NF ++DVGGQ R W IIF + +D + RM E + L
Sbjct: 194 KDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMHLF 252
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 253 NSICNNKWFTDTSIILFLNKKDL 275
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K +NF ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 163 KDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 221
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDL 244
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ N+ DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNRCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQ 61
+ ENL G + + V++G + GKT L + + +PT+ N V G
Sbjct: 18 GSHMENLYFQGQA-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG- 75
Query: 62 IGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
K +N +WD GQE +LRPL SY + TD + E V+ + +
Sbjct: 76 ----KPVNLGLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEV 128
Query: 119 KNNDNFNVPILILANKQDL 137
+++ N PI+++ K DL
Sbjct: 129 RHHCP-NTPIILVGTKLDL 146
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D QE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D QE+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQ 61
+ ENL G + + V++G + GKT L + + +PT+ N V G
Sbjct: 1 GSHMENLYFQGQA-IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDG- 58
Query: 62 IGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
K +N +WD GQE +LRPL SY + TD + E V+ + +
Sbjct: 59 ----KPVNLGLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEV 111
Query: 119 KNNDNFNVPILILANKQDL 137
+++ N PI+++ K DL
Sbjct: 112 RHHCP-NTPIILVGTKLDL 129
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 22 IVMLGLDSAGKT---TALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
IV+LG ++GKT T + F + TIG + + + + IWD+GGQ
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQD 136
+ Y G++ V D T+ + E ++ ++K + + ++ NK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174
L + IK EK L + N +++ A TGD +
Sbjct: 127 LEHMRTIKP-EKHLRFCQENGFSSHFVSAK---TGDSV 160
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLI 72
+ GS ++ V++G + GKT L + + +PT+ F+ + K +N +
Sbjct: 4 SGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDS-KPVNLGL 61
Query: 73 WDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE +LRPL SY + TD + E V+ + ++++ + PI+
Sbjct: 62 WDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPII 117
Query: 130 ILANKQDL 137
++ K DL
Sbjct: 118 LVGTKLDL 125
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ VPT+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER--MEEVK-------IEL 114
+ K + F + DVGGQ R W I+F++ S++ ++ ME+ + + +
Sbjct: 173 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 232
Query: 115 IKTIKNNDNF-NVPILILANKQDL 137
+TI NN F NV I++ NK DL
Sbjct: 233 FETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER--MEEVK-------IEL 114
+ K + F + DVGGQ R W I+F++ S++ ++ ME+ + + +
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256
Query: 115 IKTIKNNDNF-NVPILILANKQDL 137
+TI NN F NV I++ NK DL
Sbjct: 257 FETIVNNRVFSNVSIILFLNKTDL 280
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
I ++G GKTT + R+ +F++ N T+G V + I F +WD GQ
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNA--TVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQD 136
EK L Y G I D T + + ++ + + N+ PI++ ANK D
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE---APIVVCANKID 128
Query: 137 LPNAIQIKQ 145
+ N +I +
Sbjct: 129 IKNRQKISK 137
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGIN 69
+SG ++ V++G + GK L + + +PT+ N V G K +N
Sbjct: 5 SSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVN 59
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+WD GQE +LRPL SY + TD + E V+ + ++++ N
Sbjct: 60 LGLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NT 115
Query: 127 PILILANKQDL 137
PI+++ K DL
Sbjct: 116 PIILVGTKLDL 126
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G+E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 57 KVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VER 106
+ K Q+ K +NF ++DVGGQ R W IIFV+ S+ R
Sbjct: 195 ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR 251
Query: 107 MEEVKIELIKTIKNNDNF-NVPILILANKQDL 137
++E + L K+I NN + +++ NKQDL
Sbjct: 252 LQEA-LNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 57 KVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VER 106
+ K Q+ K +NF ++DVGGQ R W IIFV+ S+ R
Sbjct: 209 ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR 265
Query: 107 MEEVKIELIKTIKNNDNFN-VPILILANKQDL 137
++E + L K+I NN + +++ NKQDL
Sbjct: 266 LQEA-LNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 57 KVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VER 106
+ K Q+ K +NF ++DVGGQ R W IIFV+ S+ R
Sbjct: 209 ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR 265
Query: 107 MEEVKIELIKTIKNNDNF-NVPILILANKQDL 137
++E + L K+I NN + +++ NKQDL
Sbjct: 266 LQEA-LNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 57 KVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VER 106
+ K Q+ K +NF ++DVGGQ R W IIFV+ S+ R
Sbjct: 195 ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR 251
Query: 107 MEEVKIELIKTIKNNDNF-NVPILILANKQDL 137
++E + L K+I NN + +++ NKQDL
Sbjct: 252 LQEA-LNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 57 KVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VER 106
+ K Q+ K +NF ++DVGGQ R W IIFV+ S+ R
Sbjct: 209 ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR 265
Query: 107 MEEVKIELIKTIKNNDNFN-VPILILANKQDL 137
++E + L K+I NN + +++ NKQDL
Sbjct: 266 LQEA-LNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 16 GSSSV---HIVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFL 71
G SS+ ++M+G GK+ + +D+++ PT + K G+ I+ L
Sbjct: 1 GQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL 60
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERM---EEVKIELIKTIKNNDNFNVPI 128
D G E + +Y R +G + V T+ E E + ++++ D +P+
Sbjct: 61 --DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK--IPL 116
Query: 129 LILANKQDLPNAIQI 143
L++ NK DL Q+
Sbjct: 117 LVVGNKSDLEERRQV 131
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 198 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 256
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 257 DSICNNKWFTDTSIILFLNKKDL 279
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFN 125
+ +++D+ Q+ R L D + V TD E+ E++++L + + +D
Sbjct: 55 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD--- 111
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
VPI+++ NK DL ++ +++ G +I+ + A LH + L++ +
Sbjct: 112 VPIILVGNKSDL---VRSREVSVDEGRACAVVFDCKFIETSAA-----LHHNVQALFEGV 163
Query: 186 LKKRKLQKTNK 196
+++ +L++ +K
Sbjct: 164 VRQIRLRRDSK 174
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 165 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 223
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 224 DSICNNKWFTDTSIILFLNKKDL 246
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFN 125
+ +++D+ Q+ R L D + V TD E+ E++++L + + +D
Sbjct: 55 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD--- 111
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
VPI+++ NK DL ++ +++ G +I+ + A LH + L++ +
Sbjct: 112 VPIILVGNKSDL---VRSREVSVDEGRACAVVFDCKFIETSAA-----LHHNVQALFEGV 163
Query: 186 LKKRKLQKTNK 196
+++ +L++ +K
Sbjct: 164 VRQIRLRRDSK 174
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 166 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 224
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDL 247
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 192 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 250
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDL 273
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 163 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 221
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDL 244
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 166 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 224
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDL 247
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 163 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 221
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDL 244
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++M+G GK+ + +D+++ PT + K G+ I+ L D G E
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL--DTAGLED 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERM---EEVKIELIKTIKNNDNFNVPILILANKQDL 137
+ +Y R +G + V T+ E E + ++++ D +P+L++ NK DL
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK--IPLLVVGNKSDL 121
Query: 138 PNAIQI 143
Q+
Sbjct: 122 EERRQV 127
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 167 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 225
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 226 DSICNNKWFTDTSIILFLNKKDL 248
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 161 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 219
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDL 242
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 162 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 220
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 221 DSICNNKWFTDTSIILFLNKKDL 243
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 168 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 226
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDL 249
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDL 272
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 161 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 219
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDL 242
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 160 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 218
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 219 DSICNNKWFTDTSIILFLNKKDL 241
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDL 272
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDL 272
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDG---IIFV----------IDSTDVERMEEVKI 112
K +NF ++DVGGQ R W C +G IIF+ ++ +V RM E +
Sbjct: 162 KDLNFRMFDVGGQRSERKKW---IHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHE-SL 217
Query: 113 ELIKTIKNNDNF-NVPILILANKQDL 137
L +I N+ F I++ NK+D+
Sbjct: 218 HLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 194 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 252
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 253 DSICNNKWFTDTSIILFLNKKDL 275
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFL 71
L+ SG SS+ V+ S +T +L + I C + + +NF
Sbjct: 12 LRRSGKSSIQKVVFHKXSPNETL---------FLESTNKI---C---REDVSNSSFVNFQ 56
Query: 72 IWDVGGQ-EKLRPL--WKSYTRCTDGIIFVIDSTD--VERMEEVKIELIKTIKNNDNFNV 126
IWD GQ + P ++ R T +IFVIDS D E + + + + + K N + N
Sbjct: 57 IWDFPGQIDFFDPTFDYEXIFRGTGALIFVIDSQDDYXEALARLHLTVTRAYKVNTDINF 116
Query: 127 PILI 130
+ I
Sbjct: 117 EVFI 120
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQ 61
+ ENL G + + V++G + GKT L + +PT+ N V G
Sbjct: 18 GSHMENLYFQGQA-IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDG- 75
Query: 62 IGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
K +N +WD GQE +LRPL SY + TD + E V+ + +
Sbjct: 76 ----KPVNLGLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEV 128
Query: 119 KNNDNFNVPILILANKQDL 137
+++ N PI+++ K DL
Sbjct: 129 RHHCP-NTPIILVGTKLDL 146
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 31/159 (19%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEK---VKGQIGKCKGINF 70
S S + V +G + GKT L + + + VPT+ N V G +N
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGAT-----VNL 58
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY R D I E V + I +K+ VP
Sbjct: 59 GLWDTAGQEDYNRLRPL--SY-RGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVP 114
Query: 128 ILILANKQDL----------PNAIQI-----KQIEKLLG 151
I+++ K DL P A+ I ++++KL+G
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 178 KDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHE-SMKLF 236
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 237 DSICNNKWFTDTSIILFLNKKDL 259
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 76
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 77 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 132
Query: 132 ANKQDL 137
K DL
Sbjct: 133 GTKLDL 138
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 60 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 117
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 168
Query: 189 RK 190
R+
Sbjct: 169 RQ 170
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D + V TD +V L++ + ++P++++ NK DL + ++ E G
Sbjct: 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE---GR 154
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ + +I+ + A LH EL++ +++ +L++
Sbjct: 155 HLAGTLSCKHIETSAA-----LHHNTRELFEGAVRQIRLRR 190
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D + V TD +V L++ + ++P++++ NK DL + ++ E G
Sbjct: 87 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE---GR 143
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ + +I+ + A LH EL++ +++ +L++
Sbjct: 144 HLAGTLSCKHIETSAA-----LHHNTRELFEGAVRQIRLRR 179
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIW 73
S S + V +G + GKT L + + + VPT+ N + +N +W
Sbjct: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA--NVVVDGNTVNLGLW 59
Query: 74 DVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
D GQE +LRPL SY R D I E V + I +++ VPI++
Sbjct: 60 DTAGQEDYNRLRPL--SY-RGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIIL 115
Query: 131 LANKQDL----------PNAIQI-----KQIEKLLG 151
+ K DL P A+ I ++++KL+G
Sbjct: 116 VGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIG 151
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
K I FL D G E + + TD +I V+ + D V + ++ I + N
Sbjct: 55 KKITFL--DTPGHEAFTTMRARGAQVTDIVILVVAADD-----GVMPQTVEAINHAKAAN 107
Query: 126 VPILILANKQDLPNAIQIKQIEKLL 150
VPI++ NK D P A + +++L+
Sbjct: 108 VPIIVAINKMDKPEANPDRVMQELM 132
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D + V TD +V L++ + ++P++++ NK DL + ++ E G
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE---GR 133
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ + +I+ + A LH EL++ +++ +L++
Sbjct: 134 HLAGTLSCKHIETSAA-----LHHNTRELFEGAVRQIRLRR 169
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 10 ENLQASGSSSVH---IVMLGLDSAGKTTALYRLKFDQYLNTV-PTIGFNCEKVKGQIGKC 65
ENL G V +V+LG GKT+ ++ ++ PT+ K+ +GK
Sbjct: 12 ENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV-TLGKD 70
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
+ + + D GQ++ L S+ G + V T + + ++ K + +
Sbjct: 71 E-FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 126 VPILILANKQDLPNAIQIKQIE 147
VP++++ NK DL +++ +E
Sbjct: 130 VPVVLVGNKADLSPEREVQAVE 151
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 59
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 60 TAGQEDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 115
Query: 132 ANKQDL 137
K DL
Sbjct: 116 GTKLDL 121
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 58
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ + PIL++
Sbjct: 59 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLV 114
Query: 132 ANKQDL 137
K DL
Sbjct: 115 GTKLDL 120
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 61
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 62 TAGQEDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 117
Query: 132 ANKQDL 137
K DL
Sbjct: 118 GTKLDL 123
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ + PIL++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D G E+ + Y R +G + V + + E++ E IK +K++D+ VP++
Sbjct: 55 ILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMV 112
Query: 130 ILANKQDL-PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL ++ +Q + L Y + YI+ T A T G+ + Y L+ +
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIP-----YIE-TSAKTRQGVEDA---FYTLVREI 163
Query: 189 RK 190
R+
Sbjct: 164 RQ 165
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 58
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ + PIL++
Sbjct: 59 TAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLV 114
Query: 132 ANKQDL 137
K DL
Sbjct: 115 GTKLDL 120
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWD 74
++ V++G + GKT L + + +PT+ N V G K +N +WD
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNLGLWD 57
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQE +LRPL SY + TD + E V+ + ++++ N PI+++
Sbjct: 58 TAGQEDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILV 113
Query: 132 ANKQDL 137
K DL
Sbjct: 114 GTKLDL 119
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DV GQ R W IIF + +D + RM E ++L
Sbjct: 192 KDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 250
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 251 DSICNNKCFTDTSIILFLNKKDL 273
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K + F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 161 KDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 219
Query: 116 KTIKNNDNFN-VPILILANKQDL 137
+I NN F I++ NK+DL
Sbjct: 220 DSICNNKWFTETSIILFLNKKDL 242
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFN 125
+ +++D+ Q+ R L D + V TD E+ E++++L + + +D
Sbjct: 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD--- 106
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
VPI+++ NK DL ++ +++ G +I+ + A LH + L++ +
Sbjct: 107 VPIILVGNKSDL---VRSREVSVDEGRACAVVFDCKFIETSAA-----LHHNVQALFEGV 158
Query: 186 LKKRKLQK 193
+++ +L++
Sbjct: 159 VRQIRLRR 166
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K + F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 168 KDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 226
Query: 116 KTIKNNDNFN-VPILILANKQDL 137
+I NN F I++ NK+DL
Sbjct: 227 DSICNNKWFTETSIILFLNKKDL 249
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K + F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 168 KDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 226
Query: 116 KTIKNNDNFN-VPILILANKQDL 137
+I NN F I++ NK+DL
Sbjct: 227 DSICNNKWFTETSIILFLNKKDL 249
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DV GQ R W IIF + +D + RM E ++L
Sbjct: 192 KDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 250
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K ++F ++DVG Q R W IIF + +D + RM E ++L
Sbjct: 191 KDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDL 272
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER--MEEVK-------IEL 114
+ K + F + DVGG R W I+F++ S++ ++ ME+ + + +
Sbjct: 173 EIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 232
Query: 115 IKTIKNNDNF-NVPILILANKQDL 137
+TI NN F NV I++ NK DL
Sbjct: 233 FETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ V++G + GKT L + + +PT+ F+ + K +N +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDS-KPVNLGLWDTAG 60
Query: 78 QE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
QE +LRPL SY + TD + E V+ + ++++ + PI+++ K
Sbjct: 61 QEDYDRLRPL--SYPQ-TDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTK 116
Query: 135 QDL 137
DL
Sbjct: 117 LDL 119
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 15/158 (9%)
Query: 14 ASGSSSVH--IVMLGLDSAGKTTALYR-LKFDQYLNTVPTIGFNCEKVKGQIGKCKGINF 70
A G V +V++G GKTT + R L + V T+G + + I F
Sbjct: 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP-IKF 66
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFNVP 127
+WD GQEK L Y I + D T + V +L++ + N+P
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIP 121
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
I++ NK D+ + K K + + N+ Y I A
Sbjct: 122 IVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 156
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K + F ++DVGGQ R W IIF + +D + RM E ++L
Sbjct: 191 KDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SMKLF 249
Query: 116 KTIKNNDNFN-VPILILANKQDL 137
+I NN F I++ NK+DL
Sbjct: 250 DSICNNKWFTETSIILFLNKKDL 272
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
I F IWD GQE+ + Y R I V D ++ ++ K + +K + N+
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSNY-- 148
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174
I+++ANK D N Q+ +E + Y +N +L +IQ T A TG +
Sbjct: 149 IIILVANKID-KNKFQVDILE--VQKYAQDN-NLLFIQ-TSAKTGTNI 191
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 14 ASGSS--SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINF 70
SG S ++ V++G + GKT L + + +PT+ F+ + K +N
Sbjct: 3 GSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDS-KPVNL 60
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY + TD + E V+ + ++++ + P
Sbjct: 61 GLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STP 116
Query: 128 ILILANKQDL 137
I+++ K DL
Sbjct: 117 IILVGTKLDL 126
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 18/86 (20%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDG---IIFVIDSTDVE----------RMEEVKI 112
K ++F ++DVGG LR K + C +G IIF + +D + RM E +
Sbjct: 191 KDLHFKMFDVGG---LRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE-SM 246
Query: 113 ELIKTIKNNDNF-NVPILILANKQDL 137
+L +I NN F + I++ NK+DL
Sbjct: 247 KLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI----------DSTDVERMEEVKIELI 115
K ++F ++DVGGQ R W IIF + + RM E + L
Sbjct: 172 KNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHE-SLMLF 230
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 231 DSICNNKFFIDTSIILFLNKKDL 253
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI----------DSTDVERMEEVKIELI 115
K I F + DVGGQ R W S+ D IFV + + R+ E I +
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTE-SIAVF 217
Query: 116 KTIKNNDNFNVPI-LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171
K I N+ + LI NK DL E+ L LN + Y A+ G
Sbjct: 218 KDIXTNEFLKGAVKLIFLNKXDL--------FEEKLTKVPLNTIFPEYTGGDNAVXG 266
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELI 115
K +NF +DVGGQ R W IIF + +D + R E +L
Sbjct: 188 KDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHE-SXKLF 246
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+I NN F + I++ NK+DL
Sbjct: 247 DSICNNKWFTDTSIILFLNKKDL 269
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 LQASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGI 68
+ A G V +V++G GKTT + R ++ V T+G + + I
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-I 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFN 125
F +WD GQEK L Y I + D T + V +L++ + N
Sbjct: 60 KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----N 114
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+PI++ NK D+ + K K + + N+ Y I A
Sbjct: 115 IPIVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 151
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 15/158 (9%)
Query: 14 ASGSSSVH--IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINF 70
A G V +V++G GKTT + R ++ V T+G + + I F
Sbjct: 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKF 66
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFNVP 127
+WD GQEK L Y I + D T + V +L++ + N+P
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIP 121
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165
I++ NK D+ + K K + + N+ Y I A
Sbjct: 122 IVLCGNKVDIKDR---KVKAKSIVFHRKKNLQYYDISA 156
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157
+ D E+ E++I+L + + D +PI+++ NK DL ++ +++ G
Sbjct: 90 ITDRASFEKASELRIQLRRARQTED---IPIILVGNKSDL---VRXREVSVSEGRAXAVV 143
Query: 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
+I+ + A+ + EL++ I+++ +L++ +K
Sbjct: 144 FDXKFIETSAAV-----QHNVKELFEGIVRQVRLRRDSK 177
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157
+ D E+ E++I+L + + D +PI+++ NK DL ++ +++ G
Sbjct: 90 ITDRASFEKASELRIQLRRARQTED---IPIILVGNKSDL---VRXREVSVSEGRAXAVV 143
Query: 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
+I+ + A+ + EL++ I+++ +L++ +K
Sbjct: 144 FDCKFIETSAAV-----QHNVKELFEGIVRQVRLRRDSK 177
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G GKTT + R ++ V T+G + + I F +WD GQEK
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEK 64
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK---IELIKTIKNNDNFNVPILILANKQDL 137
L Y I + D T + V +L++ + N+PI++ NK D+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDI 119
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQA 165
+ K K + + N+ Y I A
Sbjct: 120 KDR---KVKAKSIVFHRKKNLQYYDISA 144
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157
+ D E+ E++I+L + + D +PI+++ NK DL ++ +++ G
Sbjct: 121 ITDRASFEKASELRIQLRRARQTED---IPIILVGNKSDL---VRCREVSVSEGRACAVV 174
Query: 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
+I+ + A+ + EL++ I+++ +L++ +K
Sbjct: 175 FDCKFIETSAAV-----QHNVKELFEGIVRQVRLRRDSK 208
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI-----DSTDVERMEEVKIELIKTIKNNDN 123
++ D EKL W + G +VI D E E++I+L +T + +
Sbjct: 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD-- 110
Query: 124 FNVPILILANKQDLPNAIQIK 144
+VPI+++ NK DL ++
Sbjct: 111 -HVPIILVGNKADLARCREVS 130
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 27 LDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86
L T+A +L Q IGF+ K++ + D G L
Sbjct: 39 LTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY-------RITLVDAPGHADLIRAVV 91
Query: 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI 146
S D + V+D+ + + + + LI D+FN+PI+++ K D +IK+
Sbjct: 92 SAADIIDLALIVVDAKEGPKTQTGEHMLIL-----DHFNIPIIVVITKSDNAGTEEIKRT 146
Query: 147 EKLLG--LYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
E ++ L +N+ I A TG G++EL LI+
Sbjct: 147 EMIMKSILQSTHNLKNSSIIPISAKTG----FGVDELKNLII 184
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157
+ D E+ E++I+L + + D +PI+++ NK DL ++ +++ G
Sbjct: 90 ITDRASFEKASELRIQLRRARQTED---IPIILVGNKSDL---VRCREVSVSEGRACAVV 143
Query: 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+I+ + A+ + EL++ I+++ +L++
Sbjct: 144 FDCKFIETSAAV-----QHNVKELFEGIVRQVRLRR 174
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPASGKTS-LFNLITGHNQRVGNWP--GVTVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF----------VIDSTDVERMEEVKIELI 115
+ + F + DVGGQ R W I+F +++S + RMEE K L
Sbjct: 193 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LF 251
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+TI F N +++ NK+DL
Sbjct: 252 RTIITYPWFQNSSVILFLNKKDL 274
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G + E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPNSGKTS-LFNLITGHNQRVGNWP--GVSVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF----------VIDSTDVERMEEVKIELI 115
+ + F + DVGGQ R W I+F +++S + RMEE K L
Sbjct: 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALF 223
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+TI F N +++ NK+DL
Sbjct: 224 RTIITYPWFQNSSVILFLNKKDL 246
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF----------VIDSTDVERMEEVKIELI 115
+ + F + DVGGQ R W I+F +++S + RMEE K L
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+TI F N +++ NK+DL
Sbjct: 250 RTIITYPWFQNSSVILFLNKKDL 272
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF----------VIDSTDVERMEEVKIELI 115
+ + F + DVGGQ R W I+F +++S + RMEE K L
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LF 249
Query: 116 KTIKNNDNF-NVPILILANKQDL 137
+TI F N +++ NK+DL
Sbjct: 250 RTIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 36 LYRLKFDQYLNTVPTIGFNCEKVKGQIG---KCKGINFLIWDVGGQEKLRPLWKSYTRCT 92
L R+ YL T + C G I + + F + DVGGQ R W
Sbjct: 152 LDRVADPSYLPTQQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENV 211
Query: 93 DGIIF----------VIDSTDVERMEEVKIELIKTIKNNDNF-NVPILILANKQDL 137
I+F +++S + RMEE K L +TI F N +++ NK+DL
Sbjct: 212 TSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPNSGKTS-LFNLITGHNQRVGNWP--GVTVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPNSGKTS-LFNLITGHNQRVGNWP--GVTVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPNSGKTS-LFNLITGHNQRVGNWP--GVTVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 26/153 (16%)
Query: 10 ENLQASGSSSVH-----IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEKVKGQ 61
E ++ G + VH + ++G AGKT+ L +L FD T G N V Q
Sbjct: 27 EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQTHGLNV--VTKQ 82
Query: 62 IGKCKGIN---------FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI 112
KG+ F WD GGQE + + + + + ++DS R + K
Sbjct: 83 APNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS----RTDSNKH 138
Query: 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ 145
++ I+ P++++ NK D + I+Q
Sbjct: 139 YWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQ 170
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 18 SSVHIVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
S I ++G ++GKT+ L+ L +Q + P G E+ G + K K + I D+
Sbjct: 2 SMTEIALIGNPNSGKTS-LFNLITGHNQRVGNWP--GVAVERKSGLVKKNKDLE--IQDL 56
Query: 76 GGQEKLRP------LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
G + P + + Y ++ D I+ V+D+T++ER + +LI+T +P
Sbjct: 57 PGIYSMSPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIET-------GIP 109
Query: 128 ILILANKQDL 137
+ I N D+
Sbjct: 110 VTIALNMIDV 119
>pdb|3T6C|A Chain A, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
pdb|3T6C|B Chain B, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
Length = 440
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSY-TRCTDGIIFVI-----DSTDVERMEEVKIE 113
GI+ +WD+ G++ P+++ +C DGI + D +VE K+E
Sbjct: 115 SGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKME 168
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRL--KFDQYLNTV 48
MG+ A E L G + I+M+G++ GKTT + +L +F+Q +V
Sbjct: 275 MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNF 124
+ + D G + + Y I V D + +E E K EL+K+ + +
Sbjct: 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131
Query: 125 NVPILILANKQDLP 138
+ +++ANK DLP
Sbjct: 132 PLRAVLVANKTDLP 145
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 73 WDVGGQEK--LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI 112
W VGG ++ LRP+ YT TDG+I T + +++E ++
Sbjct: 340 WVVGGMDRNGLRPM--RYTITTDGLIIGGSETGMVKIDETQV 379
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 73 WDVGGQEK--LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI 112
W VGG ++ LRP+ YT TDG+I T + +++E ++
Sbjct: 340 WVVGGMDRNGLRPM--RYTITTDGLIIGGSETGMVKIDETQV 379
>pdb|2V9M|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9M|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9O|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
pdb|2V9O|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant A87m-T109f-E192a)
Length = 274
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q +++ IV + D AG Y + + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPMANLGIVKVDSDGAG-----YHILWGLFNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 52 GFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85
GF IG G+ WD+ G+ + RP+W
Sbjct: 82 GFTQRPDLTAIGAFSGLEIACWDILGKARGRPVW 115
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123
K +GI+ + D G E+ R L+ Y + I TD+ E ++LI+TI+ ++
Sbjct: 28 KSRGIDAVGAD--GAEEAR-LYLHYQKRIGLXI-----TDLRXQPESGLDLIRTIRASER 79
Query: 124 FNVPILILANKQDLPNAIQIKQI 146
+ I++++ D+ A+ + +
Sbjct: 80 AALSIIVVSGDTDVEEAVDVXHL 102
>pdb|2V2B|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E117s-e192a-k248g-r253a-e254a)
Length = 274
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSSLPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC 91
K GK C N + + + R LW+ T C
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTEC 172
>pdb|1GT7|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|F Chain F, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|G Chain G, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|H Chain H, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|I Chain I, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|J Chain J, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|K Chain K, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|L Chain L, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|M Chain M, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|N Chain N, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|O Chain O, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|P Chain P, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|Q Chain Q, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|R Chain R, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|S Chain S, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|T Chain T, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
Length = 274
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC 91
K GK C N + + + R LW+ T C
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTEC 172
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRL--KFDQYLNTV 48
MG+ A E L G + I+M+G++ GKTT + +L +F+Q +V
Sbjct: 75 MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 124
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRL--KFDQYLNTV 48
MG+ A E L G + I+M+G++ GKTT + +L +F+Q +V
Sbjct: 80 MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 129
>pdb|1OJR|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant E192a)
Length = 274
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRL--KFDQYLNTV 48
MG+ A E L G + I+M+G++ GKTT + +L +F+Q +V
Sbjct: 81 MGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 130
>pdb|2UYV|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2UYV|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
pdb|2V9L|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-E192a)
Length = 274
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|2V9G|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-L84w-E192a)
pdb|2V9G|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-L84w-E192a)
pdb|2V9G|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-L84w-E192a)
pdb|2V9G|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant Q6y-L84w-E192a)
Length = 274
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQWDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|2HG6|A Chain A, Solution Nmr Structure Of Protein Pa1123 From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Pat4; Ontario Centre For Structural Proteomics
Target Pa1123
Length = 128
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 103 DVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI 146
DV R+ E+++I L + I N P+L+ +QDLP +Q+
Sbjct: 82 DVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQL 127
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
I D G E+ + Y + G I V + + +++K + I+ VP++++
Sbjct: 55 ILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILV 114
Query: 132 ANKQDL 137
NK DL
Sbjct: 115 GNKVDL 120
>pdb|2V29|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
pdb|2V29|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
Length = 274
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC 91
K GK C N + + + R LW+ T C
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTEC 172
>pdb|2V9E|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9E|B Chain B, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248w-a273s)
pdb|2V9F|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-A273s)
Length = 274
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|2V2A|A Chain A, L-rhamnulose-1-phosphate Aldolase From Escherichia Coli (
Mutant E192a-k248g-r253a-e254a)
Length = 274
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|2V9I|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
pdb|2V9I|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli (
Mutant E192a-K248w-L274stop)
Length = 273
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF------NCEKV 58
S FF N+Q ++++ IV + D AG Y + + VPT +CE++
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAG-----YHILWGLTNEAVPTSELPAHFLSHCERI 129
Query: 59 KGQIGK------CKGINFL----IWDVGGQEKLRPLWKSYTRC----TDGI---IFVIDS 101
K GK C N + + + R LW+ T C DG+ +++
Sbjct: 130 KATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPG 189
Query: 102 TDV 104
TD
Sbjct: 190 TDA 192
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124
C+ I D G E+ + Y + G V T +++ + ++ D
Sbjct: 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE 107
Query: 125 NVPILILANKQDLPN 139
+VP++++ NK DL +
Sbjct: 108 DVPMILVGNKCDLED 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,884,788
Number of Sequences: 62578
Number of extensions: 243935
Number of successful extensions: 1091
Number of sequences better than 100.0: 366
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 396
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)