Query psy1315
Match_columns 202
No_of_seqs 138 out of 1737
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 20:51:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 3.2E-39 6.8E-44 219.5 14.3 173 13-191 3-177 (205)
2 KOG0092|consensus 100.0 8.7E-38 1.9E-42 211.7 12.6 169 17-193 3-174 (200)
3 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-36 5.5E-41 213.6 17.0 173 16-197 3-178 (189)
4 KOG0094|consensus 100.0 1.7E-36 3.8E-41 205.5 14.3 169 16-189 19-188 (221)
5 PLN00223 ADP-ribosylation fact 100.0 1.3E-34 2.7E-39 204.3 20.4 179 1-187 1-179 (181)
6 KOG0080|consensus 100.0 6.6E-36 1.4E-40 196.4 12.3 171 14-189 6-177 (209)
7 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.4E-34 5.3E-39 203.4 20.6 177 18-194 2-178 (183)
8 cd04120 Rab12 Rab12 subfamily. 100.0 7.7E-35 1.7E-39 207.9 17.8 162 20-188 1-165 (202)
9 PTZ00133 ADP-ribosylation fact 100.0 4.4E-34 9.5E-39 201.8 20.9 179 1-187 1-179 (182)
10 KOG0078|consensus 100.0 4.9E-35 1.1E-39 201.9 15.4 170 14-189 7-177 (207)
11 smart00177 ARF ARF-like small 100.0 5E-34 1.1E-38 200.5 20.2 173 1-185 1-173 (175)
12 KOG0394|consensus 100.0 1.2E-35 2.6E-40 199.5 11.2 171 15-190 5-182 (210)
13 KOG0098|consensus 100.0 6.1E-35 1.3E-39 196.5 13.8 167 16-188 3-170 (216)
14 cd04149 Arf6 Arf6 subfamily. 100.0 7.3E-34 1.6E-38 198.3 18.3 161 17-183 7-167 (168)
15 PTZ00369 Ras-like protein; Pro 100.0 7.8E-34 1.7E-38 201.9 18.3 175 17-199 3-180 (189)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.2E-34 1.3E-38 199.4 16.9 164 19-188 2-166 (172)
17 cd04122 Rab14 Rab14 subfamily. 100.0 1E-33 2.2E-38 197.5 17.0 161 19-187 2-165 (166)
18 KOG0079|consensus 100.0 1.3E-34 2.8E-39 187.9 10.9 170 14-190 3-173 (198)
19 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.4E-33 7.3E-38 200.5 19.5 165 20-190 1-172 (201)
20 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-33 3.2E-38 199.1 17.3 166 17-188 2-179 (180)
21 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4E-33 8.7E-38 193.0 18.4 158 20-183 1-158 (159)
22 cd04133 Rop_like Rop subfamily 100.0 2.2E-33 4.7E-38 196.6 16.6 156 20-185 2-172 (176)
23 cd04158 ARD1 ARD1 subfamily. 100.0 7.7E-33 1.7E-37 193.5 19.0 163 21-188 1-163 (169)
24 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-33 5.2E-38 197.5 15.5 161 16-186 2-180 (182)
25 cd04111 Rab39 Rab39 subfamily. 100.0 6E-33 1.3E-37 200.2 17.8 169 19-193 2-173 (211)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 6.4E-33 1.4E-37 193.6 17.2 162 18-187 2-166 (167)
27 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.4E-33 9.6E-38 196.5 16.1 165 20-189 1-169 (182)
28 cd04117 Rab15 Rab15 subfamily. 100.0 5.3E-33 1.2E-37 192.8 16.2 157 20-184 1-160 (161)
29 cd04175 Rap1 Rap1 subgroup. T 100.0 5.9E-33 1.3E-37 193.2 16.4 160 19-186 1-163 (164)
30 KOG0087|consensus 100.0 2.9E-33 6.2E-38 192.4 14.1 170 14-191 9-181 (222)
31 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-32 3E-37 196.9 18.3 166 16-190 3-171 (199)
32 KOG0086|consensus 100.0 3.7E-33 8.1E-38 182.2 13.7 170 13-188 3-173 (214)
33 cd04125 RabA_like RabA-like su 100.0 1.1E-32 2.3E-37 196.0 17.4 167 20-194 1-170 (188)
34 PF00025 Arf: ADP-ribosylation 100.0 4.1E-32 8.8E-37 190.5 20.0 173 7-185 3-175 (175)
35 cd04154 Arl2 Arl2 subfamily. 100.0 2.4E-32 5.1E-37 191.7 18.7 161 17-183 12-172 (173)
36 KOG0093|consensus 100.0 3.2E-33 6.9E-38 181.2 12.9 170 14-189 16-186 (193)
37 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-32 2.6E-37 191.9 16.9 159 20-186 2-163 (165)
38 cd04126 Rab20 Rab20 subfamily. 100.0 2.1E-32 4.6E-37 197.4 18.7 163 20-188 1-192 (220)
39 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1E-32 2.2E-37 192.8 16.5 164 21-187 2-166 (170)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 1E-32 2.2E-37 192.5 16.5 160 20-186 1-167 (168)
41 cd01875 RhoG RhoG subfamily. 100.0 1.1E-32 2.3E-37 196.2 16.8 166 18-187 2-178 (191)
42 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1E-32 2.2E-37 200.1 16.9 164 15-188 9-190 (232)
43 cd04136 Rap_like Rap-like subf 100.0 9.8E-33 2.1E-37 191.8 16.2 159 19-185 1-162 (163)
44 cd00877 Ran Ran (Ras-related n 100.0 1.6E-32 3.4E-37 191.3 17.2 159 20-187 1-160 (166)
45 PLN03071 GTP-binding nuclear p 100.0 1.4E-32 3E-37 199.3 17.3 162 17-188 11-174 (219)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.7E-32 3.6E-37 191.3 17.1 160 19-186 2-164 (166)
47 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.4E-32 5.3E-37 189.3 17.8 159 21-183 1-159 (160)
48 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.3E-32 2.8E-37 193.2 15.9 163 19-185 1-174 (175)
49 cd04109 Rab28 Rab28 subfamily. 100.0 2.4E-32 5.1E-37 197.9 17.4 163 20-188 1-168 (215)
50 cd04131 Rnd Rnd subfamily. Th 100.0 1E-32 2.2E-37 193.9 14.9 158 19-186 1-176 (178)
51 KOG0073|consensus 100.0 1.2E-31 2.6E-36 176.9 18.8 176 8-189 6-181 (185)
52 cd04132 Rho4_like Rho4-like su 100.0 9.5E-33 2.1E-37 196.1 14.7 164 20-192 1-173 (187)
53 cd04144 Ras2 Ras2 subfamily. 100.0 2E-32 4.3E-37 194.8 15.9 163 21-191 1-168 (190)
54 cd04176 Rap2 Rap2 subgroup. T 100.0 2.7E-32 5.8E-37 189.7 15.9 159 19-185 1-162 (163)
55 smart00173 RAS Ras subfamily o 100.0 4.5E-32 9.7E-37 188.7 17.0 159 20-186 1-162 (164)
56 cd04124 RabL2 RabL2 subfamily. 100.0 5.5E-32 1.2E-36 187.7 17.1 160 20-189 1-161 (161)
57 cd04112 Rab26 Rab26 subfamily. 100.0 4.1E-32 8.9E-37 193.3 16.6 162 20-189 1-166 (191)
58 cd01866 Rab2 Rab2 subfamily. 100.0 7.3E-32 1.6E-36 188.4 17.4 163 17-187 2-167 (168)
59 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.1E-32 1.1E-36 195.5 16.8 167 19-188 1-178 (222)
60 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.4E-32 2E-36 186.5 17.3 159 19-185 1-161 (162)
61 PLN03110 Rab GTPase; Provision 100.0 7.4E-32 1.6E-36 195.2 17.4 166 16-189 9-177 (216)
62 smart00178 SAR Sar1p-like memb 100.0 3E-31 6.4E-36 187.8 19.8 175 4-184 3-183 (184)
63 cd01871 Rac1_like Rac1-like su 100.0 8.1E-32 1.8E-36 188.9 16.5 162 19-184 1-173 (174)
64 KOG0095|consensus 100.0 1.6E-32 3.4E-37 178.6 11.7 167 15-188 3-171 (213)
65 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.6E-31 3.5E-36 185.8 17.6 155 22-183 2-163 (164)
66 cd01868 Rab11_like Rab11-like. 100.0 1.2E-31 2.6E-36 186.7 16.9 160 18-185 2-164 (165)
67 PLN03118 Rab family protein; P 100.0 2.5E-31 5.4E-36 192.1 18.8 169 14-189 9-180 (211)
68 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.6E-31 5.6E-36 186.6 18.4 160 18-183 14-173 (174)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.6E-31 3.5E-36 185.8 16.8 159 19-185 2-163 (164)
70 PF00071 Ras: Ras family; Int 100.0 9.6E-32 2.1E-36 186.7 15.3 158 21-186 1-161 (162)
71 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.9E-31 8.5E-36 184.4 18.4 158 21-183 1-166 (167)
72 cd01864 Rab19 Rab19 subfamily. 100.0 1.5E-31 3.2E-36 186.3 16.1 160 18-184 2-164 (165)
73 cd04151 Arl1 Arl1 subfamily. 100.0 4.9E-31 1.1E-35 182.4 18.2 157 21-183 1-157 (158)
74 cd04116 Rab9 Rab9 subfamily. 100.0 2.7E-31 6E-36 185.8 17.1 162 17-184 3-169 (170)
75 cd04140 ARHI_like ARHI subfami 100.0 2.2E-31 4.7E-36 185.5 16.5 157 20-184 2-163 (165)
76 smart00176 RAN Ran (Ras-relate 100.0 1.6E-31 3.6E-36 190.5 16.0 155 25-188 1-156 (200)
77 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-31 3.7E-36 185.3 15.7 157 20-184 1-160 (161)
78 cd04106 Rab23_lke Rab23-like s 100.0 1.7E-31 3.6E-36 185.5 15.5 157 20-184 1-161 (162)
79 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.1E-31 4.6E-36 186.4 16.0 160 19-185 2-168 (170)
80 cd04134 Rho3 Rho3 subfamily. 100.0 6.2E-32 1.4E-36 192.1 13.5 166 20-189 1-177 (189)
81 cd04118 Rab24 Rab24 subfamily. 100.0 1.6E-31 3.5E-36 190.7 15.7 161 20-189 1-169 (193)
82 PLN03108 Rab family protein; P 100.0 5E-31 1.1E-35 190.2 18.1 165 17-189 4-171 (210)
83 cd04157 Arl6 Arl6 subfamily. 100.0 6.8E-31 1.5E-35 182.3 18.0 157 21-183 1-161 (162)
84 KOG0091|consensus 100.0 9.8E-32 2.1E-36 177.3 12.9 170 17-190 6-177 (213)
85 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.4E-31 7.4E-36 184.3 16.5 160 20-185 1-163 (164)
86 cd00879 Sar1 Sar1 subfamily. 100.0 1.4E-30 3.1E-35 185.4 19.8 165 15-184 15-189 (190)
87 cd01860 Rab5_related Rab5-rela 100.0 7.3E-31 1.6E-35 182.4 16.7 159 19-185 1-162 (163)
88 cd04103 Centaurin_gamma Centau 100.0 7.2E-31 1.6E-35 181.2 16.2 152 20-184 1-157 (158)
89 smart00175 RAB Rab subfamily o 100.0 7.7E-31 1.7E-35 182.4 16.4 160 20-187 1-163 (164)
90 KOG0070|consensus 100.0 5.7E-31 1.2E-35 178.1 14.6 180 1-188 1-180 (181)
91 cd01863 Rab18 Rab18 subfamily. 100.0 1.9E-30 4E-35 180.0 17.7 158 20-184 1-160 (161)
92 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.6E-30 5.7E-35 178.8 18.4 157 21-183 1-157 (158)
93 cd01861 Rab6 Rab6 subfamily. 100.0 1E-30 2.2E-35 181.3 16.1 157 20-184 1-160 (161)
94 cd04143 Rhes_like Rhes_like su 100.0 1.8E-30 3.8E-35 190.8 18.1 160 20-186 1-171 (247)
95 cd04142 RRP22 RRP22 subfamily. 100.0 1.3E-30 2.8E-35 186.1 16.4 165 20-190 1-178 (198)
96 cd04148 RGK RGK subfamily. Th 100.0 1.9E-30 4.2E-35 188.3 16.8 161 20-189 1-166 (221)
97 cd01862 Rab7 Rab7 subfamily. 100.0 4.3E-30 9.2E-35 180.0 17.9 163 20-188 1-169 (172)
98 smart00174 RHO Rho (Ras homolo 100.0 1.1E-30 2.3E-35 183.5 14.7 161 22-186 1-172 (174)
99 cd04177 RSR1 RSR1 subgroup. R 100.0 3.1E-30 6.7E-35 180.2 16.9 160 19-186 1-164 (168)
100 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-30 3.2E-35 185.2 14.7 155 19-184 2-194 (195)
101 cd04155 Arl3 Arl3 subfamily. 100.0 1.4E-29 3.1E-34 177.6 19.2 169 8-183 4-172 (173)
102 cd01892 Miro2 Miro2 subfamily. 100.0 2.3E-30 4.9E-35 180.9 14.3 160 17-186 2-166 (169)
103 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.8E-30 1E-34 180.0 15.0 154 20-183 1-171 (173)
104 KOG0081|consensus 100.0 6.9E-32 1.5E-36 177.3 5.1 172 15-190 5-185 (219)
105 cd04135 Tc10 TC10 subfamily. 100.0 3.9E-30 8.5E-35 180.6 14.3 163 20-185 1-173 (174)
106 cd04146 RERG_RasL11_like RERG/ 100.0 4.4E-30 9.6E-35 178.9 14.3 158 21-186 1-164 (165)
107 cd04139 RalA_RalB RalA/RalB su 100.0 1.9E-29 4.2E-34 175.3 17.5 159 20-186 1-162 (164)
108 cd01893 Miro1 Miro1 subfamily. 100.0 1.7E-29 3.8E-34 176.0 16.6 163 20-186 1-164 (166)
109 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.7E-29 5.9E-34 175.2 17.4 158 21-183 1-166 (167)
110 cd04123 Rab21 Rab21 subfamily. 100.0 2E-29 4.4E-34 174.8 16.6 158 20-185 1-161 (162)
111 cd00154 Rab Rab family. Rab G 100.0 4.2E-29 9.2E-34 172.3 16.5 155 20-182 1-158 (159)
112 cd04114 Rab30 Rab30 subfamily. 100.0 5.5E-29 1.2E-33 173.9 17.1 163 16-185 4-168 (169)
113 cd04159 Arl10_like Arl10-like 100.0 1.7E-28 3.7E-33 169.3 18.8 156 22-183 2-158 (159)
114 KOG0395|consensus 100.0 2.1E-29 4.6E-34 178.3 14.5 164 18-189 2-168 (196)
115 cd04147 Ras_dva Ras-dva subfam 100.0 4.1E-29 8.9E-34 178.8 16.1 161 21-186 1-163 (198)
116 cd01870 RhoA_like RhoA-like su 100.0 6.4E-29 1.4E-33 174.6 15.9 163 20-185 2-174 (175)
117 cd00157 Rho Rho (Ras homology) 100.0 6.8E-29 1.5E-33 173.7 14.3 160 20-183 1-170 (171)
118 cd04137 RheB Rheb (Ras Homolog 100.0 1.7E-28 3.6E-33 173.3 15.7 162 20-190 2-167 (180)
119 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.7E-28 5.9E-33 173.9 16.4 152 20-171 1-175 (202)
120 cd00876 Ras Ras family. The R 100.0 1.9E-28 4.2E-33 169.5 14.9 156 21-184 1-159 (160)
121 KOG0071|consensus 100.0 6.6E-28 1.4E-32 155.3 15.9 178 1-186 1-178 (180)
122 PTZ00132 GTP-binding nuclear p 100.0 8.9E-28 1.9E-32 174.1 18.2 166 15-189 5-171 (215)
123 KOG0083|consensus 100.0 1.6E-30 3.5E-35 166.2 2.5 161 24-190 2-164 (192)
124 KOG0088|consensus 100.0 2.5E-29 5.4E-34 165.2 8.1 169 15-189 9-178 (218)
125 KOG0097|consensus 100.0 2.9E-28 6.4E-33 157.5 12.9 168 13-188 5-175 (215)
126 cd04129 Rho2 Rho2 subfamily. 100.0 7.8E-28 1.7E-32 170.8 15.9 163 19-191 1-178 (187)
127 KOG0075|consensus 100.0 3.8E-27 8.3E-32 153.0 13.0 166 16-187 17-183 (186)
128 PRK03003 GTP-binding protein D 99.9 1.5E-26 3.3E-31 184.8 17.2 176 18-200 210-396 (472)
129 KOG4252|consensus 99.9 3.1E-28 6.7E-33 163.3 3.5 173 10-191 11-186 (246)
130 cd01897 NOG NOG1 is a nucleola 99.9 1.2E-25 2.6E-30 156.9 16.5 156 20-185 1-167 (168)
131 cd01890 LepA LepA subfamily. 99.9 7.4E-26 1.6E-30 159.6 14.3 157 21-185 2-176 (179)
132 KOG0393|consensus 99.9 8E-27 1.7E-31 161.9 9.0 170 18-189 3-182 (198)
133 TIGR03594 GTPase_EngA ribosome 99.9 1.6E-25 3.6E-30 177.7 16.6 176 17-199 170-357 (429)
134 KOG0072|consensus 99.9 5.4E-26 1.2E-30 147.2 11.0 181 1-188 1-181 (182)
135 cd01898 Obg Obg subfamily. Th 99.9 1.3E-25 2.7E-30 157.1 13.9 159 21-184 2-169 (170)
136 PLN00023 GTP-binding protein; 99.9 7.9E-25 1.7E-29 163.4 16.4 125 16-140 18-166 (334)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 6.8E-25 1.5E-29 167.2 16.4 164 19-189 158-331 (335)
138 cd01878 HflX HflX subfamily. 99.9 9.9E-25 2.1E-29 157.0 15.3 154 16-184 38-203 (204)
139 PRK15494 era GTPase Era; Provi 99.9 7.8E-25 1.7E-29 167.8 14.6 161 17-188 50-218 (339)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.9E-24 4.2E-29 150.7 15.3 158 21-186 2-166 (168)
141 TIGR00231 small_GTP small GTP- 99.9 3.4E-24 7.4E-29 147.6 16.1 157 19-182 1-160 (161)
142 TIGR00436 era GTP-binding prot 99.9 1.7E-24 3.7E-29 161.7 15.3 156 21-188 2-166 (270)
143 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.7E-29 150.3 14.3 150 20-183 1-163 (164)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 1.4E-24 2.9E-29 155.0 14.0 152 20-177 3-173 (194)
145 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.9E-24 6.3E-29 148.0 15.2 147 20-185 2-156 (157)
146 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-25 3.4E-30 151.8 8.1 144 20-181 1-156 (156)
147 PRK00093 GTP-binding protein D 99.9 3.4E-24 7.4E-29 170.4 17.0 176 17-199 171-357 (435)
148 PTZ00099 rab6; Provisional 99.9 2E-24 4.4E-29 151.3 13.6 136 46-189 8-145 (176)
149 PRK04213 GTP-binding protein; 99.9 2.8E-25 6.1E-30 159.5 9.3 164 16-189 6-195 (201)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.4E-24 1.6E-28 167.0 17.5 156 15-188 199-362 (442)
151 PRK09518 bifunctional cytidyla 99.9 3.7E-24 8E-29 178.4 16.3 176 18-200 449-635 (712)
152 COG1100 GTPase SAR1 and relate 99.9 7.9E-24 1.7E-28 153.8 15.8 170 19-189 5-188 (219)
153 TIGR02528 EutP ethanolamine ut 99.9 1.2E-24 2.7E-29 147.7 10.5 134 21-182 2-141 (142)
154 cd00882 Ras_like_GTPase Ras-li 99.9 5.4E-24 1.2E-28 145.4 13.5 154 24-182 1-156 (157)
155 PRK03003 GTP-binding protein D 99.9 9.7E-24 2.1E-28 168.7 16.6 159 15-187 34-200 (472)
156 COG1160 Predicted GTPases [Gen 99.9 7.4E-24 1.6E-28 162.3 15.1 176 18-200 177-365 (444)
157 PRK05291 trmE tRNA modificatio 99.9 7.7E-24 1.7E-28 167.8 15.8 152 16-187 212-371 (449)
158 KOG0076|consensus 99.9 6.1E-25 1.3E-29 146.7 7.5 169 15-188 13-189 (197)
159 cd01895 EngA2 EngA2 subfamily. 99.9 2.1E-23 4.6E-28 146.0 15.8 159 19-184 2-173 (174)
160 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-23 2.3E-28 161.8 15.2 152 17-184 187-350 (351)
161 cd00881 GTP_translation_factor 99.9 2.5E-23 5.5E-28 147.7 15.5 159 21-185 1-186 (189)
162 cd01881 Obg_like The Obg-like 99.9 7.2E-24 1.6E-28 148.9 12.4 152 24-184 1-175 (176)
163 cd04105 SR_beta Signal recogni 99.9 5.9E-23 1.3E-27 147.2 16.6 162 21-183 2-202 (203)
164 cd01889 SelB_euk SelB subfamil 99.9 2.5E-23 5.3E-28 148.3 14.1 161 20-186 1-186 (192)
165 cd01894 EngA1 EngA1 subfamily. 99.9 2.4E-23 5.2E-28 143.5 13.5 148 23-184 1-156 (157)
166 cd01879 FeoB Ferrous iron tran 99.9 1.6E-23 3.5E-28 144.6 12.4 147 24-185 1-156 (158)
167 TIGR02729 Obg_CgtA Obg family 99.9 3.8E-23 8.2E-28 157.5 15.2 159 18-185 156-328 (329)
168 KOG0074|consensus 99.9 5E-23 1.1E-27 133.1 13.0 172 7-183 5-176 (185)
169 KOG1673|consensus 99.9 4.6E-24 9.9E-29 140.0 8.1 177 15-194 16-194 (205)
170 cd04163 Era Era subfamily. Er 99.9 1.8E-22 4E-27 140.2 14.7 156 19-184 3-167 (168)
171 PF08477 Miro: Miro-like prote 99.9 3.5E-23 7.5E-28 136.5 10.3 113 21-136 1-119 (119)
172 PF00009 GTP_EFTU: Elongation 99.9 9.3E-23 2E-27 144.8 12.2 163 17-185 1-186 (188)
173 PRK12296 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.3E-27 159.9 14.6 169 16-192 156-346 (500)
174 PRK00089 era GTPase Era; Revie 99.9 2.8E-22 6E-27 151.7 15.0 160 18-187 4-172 (292)
175 TIGR03598 GTPase_YsxC ribosome 99.9 1.6E-22 3.4E-27 142.6 12.6 154 13-175 12-179 (179)
176 PRK15467 ethanolamine utilizat 99.9 1E-22 2.2E-27 140.5 11.1 143 21-188 3-149 (158)
177 COG1159 Era GTPase [General fu 99.9 1.2E-22 2.7E-27 147.9 11.8 161 18-188 5-174 (298)
178 PRK12297 obgE GTPase CgtA; Rev 99.9 7.7E-22 1.7E-26 154.0 16.9 161 20-189 159-330 (424)
179 PRK00454 engB GTP-binding prot 99.9 3.2E-22 6.9E-27 143.0 13.5 161 15-186 20-194 (196)
180 PRK11058 GTPase HflX; Provisio 99.9 7E-22 1.5E-26 155.1 16.4 155 19-187 197-363 (426)
181 TIGR01393 lepA GTP-binding pro 99.9 3.7E-22 8.1E-27 162.5 15.0 160 19-186 3-180 (595)
182 TIGR00487 IF-2 translation ini 99.9 7.8E-22 1.7E-26 160.0 16.2 160 17-184 85-248 (587)
183 PRK05306 infB translation init 99.9 7.5E-22 1.6E-26 163.7 15.8 161 16-184 287-450 (787)
184 cd01888 eIF2_gamma eIF2-gamma 99.9 7.2E-22 1.6E-26 141.7 13.7 163 20-186 1-199 (203)
185 cd00880 Era_like Era (E. coli 99.9 1.1E-21 2.4E-26 135.2 14.1 155 24-184 1-162 (163)
186 PRK00093 GTP-binding protein D 99.9 8.3E-22 1.8E-26 156.8 14.7 151 20-185 2-161 (435)
187 CHL00189 infB translation init 99.9 1.1E-21 2.4E-26 161.5 15.7 163 16-185 241-409 (742)
188 TIGR03594 GTPase_EngA ribosome 99.9 6.3E-22 1.4E-26 157.3 13.6 153 21-187 1-161 (429)
189 PRK09518 bifunctional cytidyla 99.9 1.5E-21 3.2E-26 162.9 15.7 156 18-187 274-437 (712)
190 PRK12298 obgE GTPase CgtA; Rev 99.9 2.5E-21 5.4E-26 150.4 15.2 166 20-189 160-336 (390)
191 TIGR00475 selB selenocysteine- 99.9 2.5E-21 5.3E-26 157.7 14.9 158 20-188 1-168 (581)
192 COG1160 Predicted GTPases [Gen 99.9 6.1E-22 1.3E-26 151.9 10.2 152 20-185 4-164 (444)
193 COG0486 ThdF Predicted GTPase 99.9 1E-20 2.2E-25 145.6 15.1 157 16-188 214-378 (454)
194 PRK09554 feoB ferrous iron tra 99.9 8.8E-21 1.9E-25 158.0 15.9 154 18-185 2-167 (772)
195 PRK12317 elongation factor 1-a 99.9 4E-21 8.7E-26 152.1 13.1 159 16-178 3-197 (425)
196 KOG3883|consensus 99.9 3.3E-20 7.1E-25 121.7 14.5 177 14-195 4-184 (198)
197 PRK05433 GTP-binding protein L 99.9 3E-20 6.6E-25 151.6 17.1 163 17-187 5-185 (600)
198 cd04166 CysN_ATPS CysN_ATPS su 99.9 6.4E-21 1.4E-25 137.3 11.0 151 21-177 1-185 (208)
199 TIGR00437 feoB ferrous iron tr 99.9 8.7E-21 1.9E-25 154.6 12.9 146 26-185 1-154 (591)
200 cd04168 TetM_like Tet(M)-like 99.9 6.6E-20 1.4E-24 134.1 15.9 159 21-185 1-234 (237)
201 TIGR00483 EF-1_alpha translati 99.9 1.2E-20 2.5E-25 149.5 12.6 160 15-178 3-199 (426)
202 PRK10218 GTP-binding protein; 99.8 6.3E-20 1.4E-24 149.2 16.8 163 18-186 4-195 (607)
203 TIGR00491 aIF-2 translation in 99.8 7.7E-20 1.7E-24 148.3 16.7 161 19-187 4-217 (590)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 3.9E-20 8.4E-25 150.5 14.0 160 21-186 3-191 (594)
205 cd01876 YihA_EngB The YihA (En 99.8 1.1E-19 2.3E-24 126.5 13.6 152 21-184 1-169 (170)
206 COG0218 Predicted GTPase [Gene 99.8 1.4E-19 3E-24 125.4 13.8 160 16-187 21-198 (200)
207 cd01896 DRG The developmentall 99.8 1.8E-19 3.9E-24 131.6 15.0 152 21-185 2-225 (233)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.3E-19 2.7E-24 128.8 13.8 150 19-175 2-172 (195)
209 COG2229 Predicted GTPase [Gene 99.8 4E-19 8.7E-24 120.6 15.0 157 16-184 7-176 (187)
210 KOG4423|consensus 99.8 2.8E-22 6.1E-27 135.5 -0.3 183 3-190 8-198 (229)
211 PRK04000 translation initiatio 99.8 1.4E-19 3E-24 142.2 14.3 167 14-186 4-201 (411)
212 KOG0096|consensus 99.8 3.2E-20 7E-25 125.9 8.3 161 17-186 8-169 (216)
213 TIGR03680 eif2g_arch translati 99.8 1.7E-19 3.6E-24 141.8 13.5 164 17-186 2-196 (406)
214 PRK10512 selenocysteinyl-tRNA- 99.8 2.4E-19 5.2E-24 146.6 14.6 163 20-187 1-167 (614)
215 cd01883 EF1_alpha Eukaryotic e 99.8 6.6E-20 1.4E-24 133.0 9.6 151 21-175 1-194 (219)
216 PRK04004 translation initiatio 99.8 6E-19 1.3E-23 143.6 16.1 162 17-186 4-218 (586)
217 cd04165 GTPBP1_like GTPBP1-lik 99.8 5E-19 1.1E-23 128.4 14.0 158 21-183 1-220 (224)
218 KOG1707|consensus 99.8 7.4E-20 1.6E-24 143.2 8.9 166 15-186 5-175 (625)
219 cd04169 RF3 RF3 subfamily. Pe 99.8 3.6E-18 7.7E-23 127.0 16.4 115 20-140 3-138 (267)
220 PF10662 PduV-EutP: Ethanolami 99.8 6.2E-19 1.4E-23 117.0 10.7 134 21-182 3-142 (143)
221 cd04167 Snu114p Snu114p subfam 99.8 1.2E-18 2.5E-23 126.1 12.5 113 21-138 2-136 (213)
222 PRK12736 elongation factor Tu; 99.8 2E-18 4.2E-23 135.3 14.5 164 15-185 8-200 (394)
223 PRK12735 elongation factor Tu; 99.8 2.6E-18 5.5E-23 134.8 14.7 166 13-185 6-202 (396)
224 CHL00071 tufA elongation facto 99.8 3.1E-18 6.7E-23 134.8 14.6 156 12-174 5-181 (409)
225 KOG0077|consensus 99.8 1.1E-18 2.3E-23 116.2 10.0 173 6-184 8-191 (193)
226 KOG1423|consensus 99.8 2.3E-18 5.1E-23 125.6 12.5 171 15-190 68-275 (379)
227 COG1084 Predicted GTPase [Gene 99.8 6.4E-18 1.4E-22 124.7 14.8 169 8-186 157-336 (346)
228 COG0370 FeoB Fe2+ transport sy 99.8 1.4E-18 3.1E-23 139.1 12.1 157 18-188 2-166 (653)
229 TIGR00485 EF-Tu translation el 99.8 7.8E-18 1.7E-22 132.1 14.7 152 14-172 7-179 (394)
230 cd04104 p47_IIGP_like p47 (47- 99.8 6.6E-18 1.4E-22 120.7 12.4 164 19-191 1-189 (197)
231 PRK00741 prfC peptide chain re 99.8 1.5E-17 3.2E-22 133.9 15.4 120 15-140 6-146 (526)
232 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.4E-17 3E-22 120.4 12.8 166 21-189 1-179 (232)
233 PF09439 SRPRB: Signal recogni 99.8 4.4E-18 9.6E-23 117.9 9.8 129 18-149 2-136 (181)
234 PRK05124 cysN sulfate adenylyl 99.8 9E-18 1.9E-22 134.0 12.6 159 15-178 23-217 (474)
235 PLN00043 elongation factor 1-a 99.8 1.3E-17 2.7E-22 132.2 13.2 155 15-176 3-203 (447)
236 cd04170 EF-G_bact Elongation f 99.8 7E-17 1.5E-21 120.8 16.2 113 21-139 1-130 (268)
237 PLN03126 Elongation factor Tu; 99.8 4.4E-17 9.5E-22 129.7 15.7 152 15-173 77-249 (478)
238 PTZ00141 elongation factor 1- 99.8 2E-17 4.4E-22 131.1 13.3 156 15-176 3-203 (446)
239 cd01885 EF2 EF2 (for archaea a 99.8 4.7E-17 1E-21 117.6 14.0 113 21-138 2-138 (222)
240 TIGR02034 CysN sulfate adenyly 99.7 1.7E-17 3.6E-22 130.5 11.8 151 20-176 1-187 (406)
241 KOG1191|consensus 99.7 1.8E-17 3.9E-22 127.8 11.3 171 14-188 263-452 (531)
242 COG2262 HflX GTPases [General 99.7 1.5E-16 3.2E-21 120.8 15.8 158 15-188 188-358 (411)
243 PRK13351 elongation factor G; 99.7 4.9E-17 1.1E-21 135.8 14.4 118 17-140 6-140 (687)
244 PLN03127 Elongation factor Tu; 99.7 1.2E-16 2.6E-21 126.6 15.8 164 15-185 57-251 (447)
245 PRK00049 elongation factor Tu; 99.7 8.7E-17 1.9E-21 126.1 14.8 164 14-184 7-201 (396)
246 PF01926 MMR_HSR1: 50S ribosom 99.7 1.2E-16 2.7E-21 104.6 13.0 107 21-134 1-116 (116)
247 cd01886 EF-G Elongation factor 99.7 1E-16 2.2E-21 119.3 13.8 114 21-140 1-131 (270)
248 KOG1489|consensus 99.7 8E-17 1.7E-21 118.1 12.8 151 18-184 195-365 (366)
249 COG0532 InfB Translation initi 99.7 1.6E-16 3.4E-21 124.3 15.3 165 18-188 4-172 (509)
250 TIGR00503 prfC peptide chain r 99.7 1.5E-16 3.1E-21 128.3 15.1 121 13-139 5-146 (527)
251 KOG0462|consensus 99.7 1.8E-16 3.8E-21 123.8 12.9 162 17-186 58-235 (650)
252 COG1163 DRG Predicted GTPase [ 99.7 3.1E-16 6.7E-21 115.5 13.2 158 16-186 60-289 (365)
253 PRK05506 bifunctional sulfate 99.7 1.2E-16 2.6E-21 132.2 12.0 156 15-176 20-211 (632)
254 COG5256 TEF1 Translation elong 99.7 8.4E-17 1.8E-21 122.1 9.6 159 15-177 3-202 (428)
255 KOG0090|consensus 99.7 4.9E-16 1.1E-20 107.9 12.3 163 16-184 35-237 (238)
256 PTZ00327 eukaryotic translatio 99.7 3.2E-16 6.9E-21 124.0 13.0 169 15-186 30-233 (460)
257 TIGR00484 EF-G translation elo 99.7 9.2E-16 2E-20 128.1 16.4 118 16-139 7-141 (689)
258 KOG1145|consensus 99.7 1E-15 2.2E-20 119.7 14.6 164 16-188 150-318 (683)
259 COG3596 Predicted GTPase [Gene 99.7 4E-16 8.7E-21 112.7 10.9 174 10-188 30-224 (296)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-15 2.3E-20 109.3 12.8 167 20-189 1-187 (196)
261 cd01899 Ygr210 Ygr210 subfamil 99.7 1.2E-15 2.7E-20 115.6 13.7 81 22-102 1-110 (318)
262 cd01850 CDC_Septin CDC/Septin. 99.7 6.9E-16 1.5E-20 115.3 10.5 116 18-140 3-158 (276)
263 PRK09866 hypothetical protein; 99.7 8.2E-15 1.8E-19 117.7 16.5 113 68-183 230-350 (741)
264 COG0536 Obg Predicted GTPase [ 99.7 1.8E-15 4E-20 112.3 11.9 157 21-189 161-336 (369)
265 PRK12739 elongation factor G; 99.7 3.7E-15 8.1E-20 124.4 15.2 119 16-140 5-140 (691)
266 KOG1532|consensus 99.6 4E-15 8.7E-20 107.4 12.3 177 13-189 13-267 (366)
267 COG0481 LepA Membrane GTPase L 99.6 2.3E-15 4.9E-20 116.0 11.3 161 16-187 6-187 (603)
268 PRK00007 elongation factor G; 99.6 9.5E-15 2.1E-19 122.0 15.2 118 16-139 7-141 (693)
269 smart00275 G_alpha G protein a 99.6 3.7E-14 8.1E-19 109.0 16.4 125 66-190 182-338 (342)
270 PRK12740 elongation factor G; 99.6 1.3E-14 2.8E-19 121.2 14.1 110 25-140 1-127 (668)
271 cd01853 Toc34_like Toc34-like 99.6 2.9E-14 6.3E-19 104.8 14.3 130 7-139 19-163 (249)
272 KOG1490|consensus 99.6 2.6E-15 5.7E-20 116.3 8.8 177 9-190 158-345 (620)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3.7E-14 8.1E-19 105.9 13.8 129 7-138 26-166 (313)
274 COG1217 TypA Predicted membran 99.6 2.1E-14 4.6E-19 110.5 12.5 162 19-186 5-195 (603)
275 cd00066 G-alpha G protein alph 99.6 4.8E-14 1E-18 107.5 14.0 125 66-190 159-315 (317)
276 COG4917 EutP Ethanolamine util 99.6 1E-14 2.2E-19 92.9 8.3 137 21-183 3-143 (148)
277 PRK13768 GTPase; Provisional 99.6 1.1E-14 2.4E-19 107.7 9.6 117 69-186 98-247 (253)
278 KOG3905|consensus 99.6 4.4E-14 9.4E-19 104.3 12.4 180 16-197 49-301 (473)
279 TIGR00490 aEF-2 translation el 99.6 4.2E-14 9.1E-19 118.5 12.9 125 9-139 9-152 (720)
280 PRK09602 translation-associate 99.6 1.3E-13 2.9E-18 107.6 14.3 83 20-102 2-113 (396)
281 PRK09435 membrane ATPase/prote 99.6 9.7E-14 2.1E-18 105.5 13.1 170 5-186 42-260 (332)
282 PF04548 AIG1: AIG1 family; I 99.5 6.1E-14 1.3E-18 101.3 8.9 168 20-190 1-190 (212)
283 PTZ00416 elongation factor 2; 99.5 1.3E-13 2.8E-18 117.0 11.3 131 3-138 3-157 (836)
284 PF05783 DLIC: Dynein light in 99.5 5.2E-13 1.1E-17 105.8 13.8 176 15-194 21-272 (472)
285 PRK14845 translation initiatio 99.5 3.8E-13 8.3E-18 114.9 13.2 149 30-186 472-673 (1049)
286 KOG0458|consensus 99.5 2.2E-13 4.7E-18 107.5 10.1 158 15-177 173-373 (603)
287 PF05049 IIGP: Interferon-indu 99.5 7.8E-14 1.7E-18 106.8 7.4 177 6-191 22-223 (376)
288 PLN00116 translation elongatio 99.5 2.8E-13 6.2E-18 115.2 11.5 131 3-138 3-163 (843)
289 PF03029 ATP_bind_1: Conserved 99.5 6.2E-14 1.3E-18 102.5 6.3 112 69-185 92-236 (238)
290 COG2895 CysN GTPases - Sulfate 99.5 2.7E-13 5.8E-18 101.2 9.0 155 16-175 3-192 (431)
291 PTZ00258 GTP-binding protein; 99.5 1.3E-12 2.8E-17 101.2 13.2 89 13-102 15-126 (390)
292 COG3276 SelB Selenocysteine-sp 99.5 8.6E-13 1.9E-17 101.3 11.6 159 21-186 2-162 (447)
293 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.5E-17 94.6 12.5 144 16-173 36-183 (225)
294 KOG0082|consensus 99.5 2.4E-12 5.1E-17 97.5 13.5 126 65-191 192-349 (354)
295 TIGR00101 ureG urease accessor 99.4 2.9E-12 6.3E-17 91.4 12.0 102 68-185 92-195 (199)
296 TIGR00750 lao LAO/AO transport 99.4 1E-11 2.2E-16 94.3 15.1 168 7-186 22-238 (300)
297 TIGR02836 spore_IV_A stage IV 99.4 1.1E-11 2.4E-16 95.3 14.9 164 8-181 6-232 (492)
298 PF03308 ArgK: ArgK protein; 99.4 1.9E-12 4.2E-17 93.7 9.1 169 5-185 15-229 (266)
299 PRK07560 elongation factor EF- 99.4 3.9E-12 8.5E-17 107.1 12.4 127 7-139 8-153 (731)
300 KOG3886|consensus 99.4 1.3E-12 2.8E-17 92.3 7.8 150 19-170 4-163 (295)
301 COG5257 GCD11 Translation init 99.4 1.1E-12 2.3E-17 97.0 7.4 164 17-186 8-202 (415)
302 smart00010 small_GTPase Small 99.4 1.1E-12 2.3E-17 86.7 6.8 113 20-175 1-115 (124)
303 TIGR00157 ribosome small subun 99.4 1.6E-12 3.4E-17 95.7 8.2 96 79-183 24-120 (245)
304 PF00350 Dynamin_N: Dynamin fa 99.4 8.1E-12 1.8E-16 87.0 10.1 63 69-135 102-168 (168)
305 PRK09601 GTP-binding protein Y 99.4 8.7E-12 1.9E-16 95.6 10.6 82 20-102 3-107 (364)
306 COG4108 PrfC Peptide chain rel 99.4 1.1E-11 2.4E-16 95.1 11.0 119 13-139 6-147 (528)
307 smart00053 DYNc Dynamin, GTPas 99.4 5.4E-11 1.2E-15 86.8 14.1 120 17-140 24-207 (240)
308 COG1703 ArgK Putative periplas 99.3 1E-10 2.3E-15 86.0 14.8 170 5-186 37-254 (323)
309 KOG1144|consensus 99.3 1.1E-11 2.3E-16 100.5 8.3 166 17-188 473-689 (1064)
310 COG0050 TufB GTPases - transla 99.3 1.5E-11 3.2E-16 90.0 8.1 152 12-170 5-177 (394)
311 KOG0461|consensus 99.3 6.2E-11 1.3E-15 88.6 11.4 163 18-187 6-194 (522)
312 TIGR00073 hypB hydrogenase acc 99.3 1.6E-11 3.4E-16 88.5 8.2 154 15-184 18-205 (207)
313 TIGR00993 3a0901s04IAP86 chlor 99.3 7E-11 1.5E-15 95.8 12.2 121 16-139 115-250 (763)
314 PF00735 Septin: Septin; Inte 99.3 3.5E-11 7.6E-16 90.1 9.0 120 19-145 4-162 (281)
315 KOG0468|consensus 99.2 1.1E-10 2.5E-15 93.7 11.4 126 7-137 116-261 (971)
316 KOG0705|consensus 99.2 1.7E-11 3.8E-16 96.3 6.4 163 16-189 27-192 (749)
317 COG0378 HypB Ni2+-binding GTPa 99.2 8E-11 1.7E-15 81.5 8.5 151 19-185 13-200 (202)
318 COG0480 FusA Translation elong 99.2 1.4E-10 3.1E-15 95.9 11.0 119 16-140 7-143 (697)
319 PF00503 G-alpha: G-protein al 99.2 1.6E-10 3.5E-15 90.9 9.4 120 66-185 234-389 (389)
320 COG0012 Predicted GTPase, prob 99.2 9.8E-10 2.1E-14 83.5 12.7 85 19-103 2-109 (372)
321 KOG0410|consensus 99.1 2.4E-10 5.2E-15 84.8 8.2 154 15-188 174-343 (410)
322 KOG1707|consensus 99.1 5.7E-10 1.2E-14 88.6 10.4 158 15-187 421-584 (625)
323 PRK10463 hydrogenase nickel in 99.1 1.1E-10 2.4E-15 86.9 6.0 56 125-184 230-287 (290)
324 cd01858 NGP_1 NGP-1. Autoanti 99.1 3E-10 6.5E-15 78.3 7.5 57 17-77 100-156 (157)
325 cd01859 MJ1464 MJ1464. This f 99.1 6.6E-10 1.4E-14 76.5 7.7 95 81-186 2-96 (156)
326 cd01900 YchF YchF subfamily. 99.1 4E-10 8.6E-15 83.9 6.8 80 22-102 1-103 (274)
327 PRK12289 GTPase RsgA; Reviewed 99.1 7.1E-10 1.5E-14 85.4 8.3 92 82-183 80-172 (352)
328 COG5019 CDC3 Septin family pro 99.1 1.5E-09 3.2E-14 82.1 9.3 130 12-147 16-184 (373)
329 KOG2486|consensus 99.0 4.7E-10 1E-14 81.6 6.1 159 16-183 133-313 (320)
330 KOG1491|consensus 99.0 5E-09 1.1E-13 78.4 11.6 90 14-103 15-126 (391)
331 cd04178 Nucleostemin_like Nucl 99.0 6.8E-10 1.5E-14 77.4 6.2 58 16-77 114-171 (172)
332 KOG0085|consensus 99.0 1.2E-09 2.5E-14 77.7 6.7 133 56-190 188-353 (359)
333 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 8.1E-10 1.7E-14 74.8 5.8 54 21-78 85-138 (141)
334 cd01855 YqeH YqeH. YqeH is an 99.0 1.5E-09 3.2E-14 77.2 7.2 99 81-186 24-125 (190)
335 cd01855 YqeH YqeH. YqeH is an 99.0 1.4E-09 3E-14 77.4 6.2 70 4-77 112-189 (190)
336 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.1E-09 4.5E-14 81.1 7.3 89 85-183 72-161 (287)
337 KOG2655|consensus 99.0 6.6E-09 1.4E-13 79.1 9.8 122 15-142 17-175 (366)
338 KOG3887|consensus 99.0 2.6E-08 5.7E-13 71.3 11.9 166 19-188 27-204 (347)
339 cd01859 MJ1464 MJ1464. This f 98.9 4.2E-09 9.1E-14 72.5 7.7 59 15-77 97-155 (156)
340 KOG1954|consensus 98.9 2.1E-08 4.6E-13 76.0 11.5 130 16-149 55-235 (532)
341 PRK12288 GTPase RsgA; Reviewed 98.9 7.1E-09 1.5E-13 79.9 9.0 89 88-183 117-205 (347)
342 PRK00098 GTPase RsgA; Reviewed 98.9 4.2E-09 9.1E-14 79.9 6.7 87 88-183 77-164 (298)
343 KOG1486|consensus 98.9 6.6E-08 1.4E-12 69.8 12.2 87 17-106 60-154 (364)
344 cd01856 YlqF YlqF. Proteins o 98.9 6.4E-09 1.4E-13 72.7 7.1 58 17-78 113-170 (171)
345 COG5258 GTPBP1 GTPase [General 98.9 4.5E-08 9.7E-13 74.6 11.2 164 14-183 112-336 (527)
346 KOG0460|consensus 98.8 9.4E-09 2E-13 77.0 6.8 150 14-169 49-218 (449)
347 PRK09563 rbgA GTPase YlqF; Rev 98.8 7.8E-09 1.7E-13 78.1 6.6 58 17-78 119-176 (287)
348 KOG0467|consensus 98.8 5.5E-09 1.2E-13 85.3 6.0 114 14-136 4-135 (887)
349 TIGR03596 GTPase_YlqF ribosome 98.8 7.6E-09 1.7E-13 77.8 6.2 58 17-78 116-173 (276)
350 KOG0447|consensus 98.8 2.5E-07 5.3E-12 73.7 14.6 147 16-166 305-521 (980)
351 COG5192 BMS1 GTP-binding prote 98.8 3.1E-08 6.6E-13 79.0 9.6 143 15-170 65-210 (1077)
352 KOG1143|consensus 98.8 1.5E-08 3.2E-13 77.0 7.4 159 18-181 166-383 (591)
353 cd01849 YlqF_related_GTPase Yl 98.8 1.5E-08 3.2E-13 69.7 6.9 58 16-77 97-154 (155)
354 KOG0099|consensus 98.8 4.4E-08 9.6E-13 71.0 9.4 126 66-191 200-374 (379)
355 cd01858 NGP_1 NGP-1. Autoanti 98.8 6.9E-08 1.5E-12 66.5 9.3 92 87-186 4-95 (157)
356 COG1161 Predicted GTPases [Gen 98.8 1.4E-08 3E-13 77.8 5.9 58 17-78 130-187 (322)
357 COG1618 Predicted nucleotide k 98.8 3.6E-07 7.9E-12 61.6 11.4 149 17-187 3-177 (179)
358 cd01849 YlqF_related_GTPase Yl 98.8 6.9E-08 1.5E-12 66.3 8.4 84 93-186 1-85 (155)
359 KOG1547|consensus 98.7 9.3E-08 2E-12 68.5 8.8 144 16-168 43-225 (336)
360 KOG0466|consensus 98.7 4.2E-09 9.2E-14 77.8 1.9 165 16-186 35-241 (466)
361 KOG0448|consensus 98.7 4.3E-07 9.4E-12 73.8 12.7 149 16-169 106-309 (749)
362 KOG3859|consensus 98.7 3E-08 6.4E-13 72.5 5.6 122 18-144 41-195 (406)
363 cd01851 GBP Guanylate-binding 98.7 4.9E-07 1.1E-11 65.9 12.0 88 16-105 4-105 (224)
364 TIGR00092 GTP-binding protein 98.7 9.4E-08 2E-12 73.7 8.0 83 20-102 3-108 (368)
365 KOG1487|consensus 98.7 1.6E-07 3.5E-12 68.1 8.3 84 20-105 60-150 (358)
366 cd01856 YlqF YlqF. Proteins o 98.7 6.9E-08 1.5E-12 67.5 6.3 92 82-186 10-101 (171)
367 PRK12289 GTPase RsgA; Reviewed 98.7 7.2E-08 1.6E-12 74.5 6.7 55 21-79 174-235 (352)
368 TIGR03597 GTPase_YqeH ribosome 98.6 7.1E-08 1.5E-12 75.1 6.3 98 78-184 50-151 (360)
369 PRK12288 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 72.9 7.4 57 21-81 207-270 (347)
370 TIGR03596 GTPase_YlqF ribosome 98.6 1.8E-07 3.8E-12 70.4 7.6 94 82-188 12-105 (276)
371 PRK13796 GTPase YqeH; Provisio 98.6 1.4E-07 3.1E-12 73.5 6.8 71 4-79 146-221 (365)
372 KOG0464|consensus 98.6 1.1E-08 2.4E-13 78.7 0.4 127 8-140 26-169 (753)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.4E-07 5.2E-12 62.6 6.5 78 85-173 5-84 (141)
374 TIGR00157 ribosome small subun 98.6 2.1E-07 4.5E-12 68.7 6.6 55 21-80 122-183 (245)
375 TIGR03597 GTPase_YqeH ribosome 98.6 2.3E-07 4.9E-12 72.3 7.0 71 4-79 140-215 (360)
376 TIGR03348 VI_IcmF type VI secr 98.5 1.2E-06 2.5E-11 77.9 11.8 113 20-139 112-257 (1169)
377 KOG0465|consensus 98.5 2.3E-07 5E-12 74.5 6.0 117 16-138 36-169 (721)
378 KOG0459|consensus 98.5 5.7E-08 1.2E-12 74.4 2.4 157 16-179 76-279 (501)
379 KOG0463|consensus 98.5 5.9E-07 1.3E-11 68.6 7.3 158 18-181 132-353 (641)
380 PF09547 Spore_IV_A: Stage IV 98.5 4.6E-06 1E-10 64.9 12.1 153 7-169 5-218 (492)
381 KOG1424|consensus 98.5 2E-07 4.4E-12 73.4 4.3 58 16-77 311-368 (562)
382 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.3E-06 2.8E-11 66.1 8.4 101 75-188 7-108 (287)
383 PRK14974 cell division protein 98.4 2.2E-06 4.8E-11 65.8 9.5 145 18-179 139-323 (336)
384 PF03193 DUF258: Protein of un 98.4 3.6E-07 7.7E-12 62.5 4.2 24 20-43 36-59 (161)
385 PRK10416 signal recognition pa 98.4 9.1E-06 2E-10 62.2 11.6 145 18-179 113-303 (318)
386 PRK01889 GTPase RsgA; Reviewed 98.4 2.8E-06 6.1E-11 66.1 9.0 85 88-182 109-193 (356)
387 PRK00098 GTPase RsgA; Reviewed 98.4 1.7E-06 3.7E-11 65.8 7.1 57 20-80 165-228 (298)
388 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.9E-06 4.1E-11 65.2 7.3 58 20-81 162-226 (287)
389 TIGR00064 ftsY signal recognit 98.3 7.4E-06 1.6E-10 61.4 10.3 97 66-179 153-261 (272)
390 cd03112 CobW_like The function 98.3 5E-06 1.1E-10 57.3 8.7 22 21-42 2-23 (158)
391 COG1162 Predicted GTPases [Gen 98.3 1.8E-06 3.9E-11 64.5 5.5 65 12-81 158-229 (301)
392 TIGR01425 SRP54_euk signal rec 98.3 1.9E-05 4.2E-10 62.5 11.2 115 18-139 99-253 (429)
393 PF00448 SRP54: SRP54-type pro 98.2 1.3E-05 2.9E-10 57.1 8.2 140 20-177 2-182 (196)
394 KOG2484|consensus 98.1 2.5E-06 5.3E-11 65.5 3.3 58 16-77 249-306 (435)
395 cd03114 ArgK-like The function 98.1 3.8E-05 8.2E-10 52.3 8.8 59 66-136 90-148 (148)
396 KOG1534|consensus 98.1 2.9E-05 6.2E-10 55.0 8.1 114 69-186 99-251 (273)
397 PRK14721 flhF flagellar biosyn 98.1 6.6E-05 1.4E-09 59.4 10.8 144 18-178 190-370 (420)
398 PRK13796 GTPase YqeH; Provisio 98.1 1.4E-05 3.1E-10 62.5 7.1 96 80-184 58-157 (365)
399 PRK13695 putative NTPase; Prov 98.1 0.00017 3.7E-09 50.5 11.9 22 20-41 1-22 (174)
400 KOG2485|consensus 98.0 6.9E-06 1.5E-10 61.3 4.3 61 16-77 140-205 (335)
401 cd03115 SRP The signal recogni 98.0 0.00012 2.5E-09 51.2 9.8 67 67-140 82-154 (173)
402 PRK11889 flhF flagellar biosyn 98.0 4.8E-05 1E-09 59.4 8.0 145 18-179 240-421 (436)
403 PRK14722 flhF flagellar biosyn 98.0 5.1E-05 1.1E-09 59.1 8.2 124 17-140 135-296 (374)
404 PF02492 cobW: CobW/HypB/UreG, 97.9 9.1E-05 2E-09 52.1 8.2 77 67-150 84-167 (178)
405 PF06858 NOG1: Nucleolar GTP-b 97.9 2E-05 4.2E-10 43.8 3.7 43 92-136 14-58 (58)
406 KOG2423|consensus 97.9 1.3E-05 2.8E-10 61.8 3.9 85 15-106 303-389 (572)
407 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00014 2.9E-09 45.4 8.0 97 22-133 2-99 (99)
408 KOG0469|consensus 97.9 8E-05 1.7E-09 59.3 7.9 123 10-137 10-162 (842)
409 COG1419 FlhF Flagellar GTP-bin 97.9 5.3E-05 1.2E-09 59.0 6.7 115 19-140 203-353 (407)
410 COG3640 CooC CO dehydrogenase 97.9 0.00011 2.4E-09 53.0 7.6 48 87-138 151-198 (255)
411 PRK12727 flagellar biosynthesi 97.8 0.00014 3.1E-09 58.9 9.0 140 17-174 348-523 (559)
412 COG0523 Putative GTPases (G3E 97.8 0.00054 1.2E-08 52.6 11.8 100 68-178 85-193 (323)
413 PRK14723 flhF flagellar biosyn 97.8 0.00014 3.1E-09 61.4 9.2 144 20-178 186-367 (767)
414 PF03266 NTPase_1: NTPase; In 97.8 2.8E-05 6.1E-10 54.0 4.3 52 21-75 1-52 (168)
415 COG3523 IcmF Type VI protein s 97.8 8.7E-05 1.9E-09 65.2 7.7 112 20-139 126-270 (1188)
416 cd03111 CpaE_like This protein 97.8 0.00031 6.8E-09 44.9 8.5 103 22-134 2-106 (106)
417 COG1162 Predicted GTPases [Gen 97.8 0.00015 3.2E-09 54.5 7.7 94 83-184 71-165 (301)
418 cd02042 ParA ParA and ParB of 97.8 0.00022 4.8E-09 45.3 7.6 82 22-115 2-84 (104)
419 cd02038 FleN-like FleN is a me 97.7 0.00031 6.7E-09 47.3 8.2 105 24-137 5-109 (139)
420 PRK12726 flagellar biosynthesi 97.7 0.00013 2.9E-09 56.7 6.9 23 18-40 205-227 (407)
421 PRK05703 flhF flagellar biosyn 97.7 0.00021 4.6E-09 57.0 8.1 95 67-178 299-401 (424)
422 PRK06995 flhF flagellar biosyn 97.7 0.00033 7.2E-09 56.5 8.7 23 19-41 256-278 (484)
423 COG0194 Gmk Guanylate kinase [ 97.7 4.3E-05 9.3E-10 53.1 3.2 26 18-43 3-28 (191)
424 PRK11537 putative GTP-binding 97.7 0.00057 1.2E-08 52.5 9.6 67 68-140 91-165 (318)
425 PF13207 AAA_17: AAA domain; P 97.7 4.5E-05 9.7E-10 49.9 3.1 22 21-42 1-22 (121)
426 PRK00771 signal recognition pa 97.7 0.00023 4.9E-09 56.9 7.5 24 17-40 93-116 (437)
427 PRK08118 topology modulation p 97.6 4.5E-05 9.8E-10 53.0 3.0 22 21-42 3-24 (167)
428 COG0563 Adk Adenylate kinase a 97.6 5.3E-05 1.2E-09 53.1 3.1 23 20-42 1-23 (178)
429 PF05621 TniB: Bacterial TniB 97.6 0.00048 1E-08 51.9 8.1 107 14-134 56-189 (302)
430 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00056 1.2E-08 45.5 7.6 37 7-43 10-46 (133)
431 PRK07261 topology modulation p 97.6 6E-05 1.3E-09 52.6 3.0 23 20-42 1-23 (171)
432 TIGR00959 ffh signal recogniti 97.6 0.00041 8.9E-09 55.3 8.0 22 18-39 98-119 (428)
433 KOG4273|consensus 97.6 0.00079 1.7E-08 49.1 8.6 115 19-138 4-122 (418)
434 PRK12724 flagellar biosynthesi 97.6 0.00037 8.1E-09 55.0 7.5 23 19-41 223-245 (432)
435 PRK10867 signal recognition pa 97.5 0.00036 7.8E-09 55.7 7.2 22 18-39 99-120 (433)
436 PRK06731 flhF flagellar biosyn 97.5 0.00049 1.1E-08 51.5 7.5 143 19-178 75-254 (270)
437 PRK14737 gmk guanylate kinase; 97.5 0.00013 2.8E-09 51.7 4.2 24 19-42 4-27 (186)
438 PF13671 AAA_33: AAA domain; P 97.5 7.6E-05 1.7E-09 50.3 2.8 21 22-42 2-22 (143)
439 cd01130 VirB11-like_ATPase Typ 97.5 0.00012 2.6E-09 51.8 3.6 38 5-42 11-48 (186)
440 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.9E-09 41.5 2.9 24 21-44 25-48 (62)
441 PF13521 AAA_28: AAA domain; P 97.5 7.2E-05 1.6E-09 51.8 2.2 22 21-42 1-22 (163)
442 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.6E-09 42.9 2.9 21 22-42 2-22 (69)
443 KOG0780|consensus 97.5 0.00019 4.2E-09 55.4 4.5 103 14-116 96-238 (483)
444 cd00071 GMPK Guanosine monopho 97.5 0.00022 4.7E-09 47.9 4.3 21 22-42 2-22 (137)
445 KOG0446|consensus 97.4 7.1E-05 1.5E-09 62.5 2.3 90 14-103 24-180 (657)
446 PF00437 T2SE: Type II/IV secr 97.4 0.00032 7E-09 52.7 5.6 36 7-42 115-150 (270)
447 PRK12723 flagellar biosynthesi 97.4 0.00085 1.8E-08 52.8 8.0 144 18-178 173-356 (388)
448 PRK14738 gmk guanylate kinase; 97.4 0.00028 6.1E-09 50.8 4.8 28 15-42 9-36 (206)
449 TIGR02475 CobW cobalamin biosy 97.4 0.0016 3.5E-08 50.5 9.2 102 68-179 93-223 (341)
450 COG1116 TauB ABC-type nitrate/ 97.4 0.00013 2.8E-09 53.1 2.9 25 19-43 29-53 (248)
451 cd00009 AAA The AAA+ (ATPases 97.4 0.00089 1.9E-08 44.8 7.0 26 18-43 18-43 (151)
452 PLN02674 adenylate kinase 97.4 0.00025 5.4E-09 52.2 4.3 35 7-41 19-53 (244)
453 PF00005 ABC_tran: ABC transpo 97.4 0.00016 3.6E-09 48.3 3.1 25 19-43 11-35 (137)
454 COG1126 GlnQ ABC-type polar am 97.4 0.00015 3.2E-09 51.8 2.8 28 16-43 25-52 (240)
455 PRK06217 hypothetical protein; 97.3 0.00021 4.5E-09 50.5 3.1 23 20-42 2-24 (183)
456 COG1136 SalX ABC-type antimicr 97.3 0.00019 4.2E-09 51.9 2.8 26 18-43 30-55 (226)
457 PRK10646 ADP-binding protein; 97.3 0.0027 6E-08 43.2 8.1 37 7-43 16-52 (153)
458 smart00382 AAA ATPases associa 97.3 0.00026 5.7E-09 47.0 3.2 25 20-44 3-27 (148)
459 PF13238 AAA_18: AAA domain; P 97.3 0.00023 5.1E-09 46.8 2.8 21 22-42 1-21 (129)
460 PRK03839 putative kinase; Prov 97.3 0.00025 5.4E-09 49.9 3.0 22 21-42 2-23 (180)
461 PRK14530 adenylate kinase; Pro 97.3 0.00025 5.3E-09 51.5 3.1 22 20-41 4-25 (215)
462 cd01131 PilT Pilus retraction 97.3 0.0018 4E-08 46.3 7.5 22 22-43 4-25 (198)
463 PF00004 AAA: ATPase family as 97.2 0.00027 5.8E-09 46.8 2.9 22 22-43 1-22 (132)
464 COG0541 Ffh Signal recognition 97.2 0.00095 2.1E-08 52.5 6.1 115 16-137 97-251 (451)
465 TIGR00235 udk uridine kinase. 97.2 0.00032 6.9E-09 50.6 3.3 26 17-42 4-29 (207)
466 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.6E-09 49.8 3.2 23 21-43 4-26 (186)
467 KOG1533|consensus 97.2 0.0012 2.5E-08 47.8 6.0 70 66-139 95-177 (290)
468 PF00625 Guanylate_kin: Guanyl 97.2 0.00028 6.2E-09 49.8 3.0 21 22-42 5-25 (183)
469 PRK09270 nucleoside triphospha 97.2 0.00056 1.2E-08 50.1 4.6 33 11-43 25-57 (229)
470 PF04665 Pox_A32: Poxvirus A32 97.2 0.00031 6.6E-09 51.5 3.2 28 16-43 10-37 (241)
471 PTZ00088 adenylate kinase 1; P 97.2 0.00036 7.7E-09 51.0 3.5 25 17-41 4-28 (229)
472 PRK05480 uridine/cytidine kina 97.2 0.00034 7.5E-09 50.4 3.4 26 17-42 4-29 (209)
473 PF05496 RuvB_N: Holliday junc 97.2 0.00058 1.2E-08 49.3 4.4 34 10-43 41-74 (233)
474 COG4962 CpaF Flp pilus assembl 97.2 0.0007 1.5E-08 51.7 5.0 31 13-43 167-197 (355)
475 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00035 7.5E-09 44.5 2.8 22 19-40 15-36 (107)
476 PRK14532 adenylate kinase; Pro 97.2 0.00034 7.3E-09 49.6 3.0 23 20-42 1-23 (188)
477 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00031 6.8E-09 49.6 2.8 21 20-40 4-24 (188)
478 TIGR02322 phosphon_PhnN phosph 97.2 0.00033 7.1E-09 49.2 2.8 22 21-42 3-24 (179)
479 PRK08233 hypothetical protein; 97.2 0.0004 8.7E-09 48.8 3.3 24 19-42 3-26 (182)
480 PRK01889 GTPase RsgA; Reviewed 97.2 0.00043 9.3E-09 54.1 3.6 26 19-44 195-220 (356)
481 cd02023 UMPK Uridine monophosp 97.2 0.00033 7.1E-09 50.1 2.8 21 22-42 2-22 (198)
482 COG1120 FepC ABC-type cobalami 97.2 0.00035 7.7E-09 51.6 2.9 28 15-42 24-51 (258)
483 PRK13894 conjugal transfer ATP 97.2 0.00041 8.8E-09 53.3 3.3 31 12-42 141-171 (319)
484 TIGR03263 guanyl_kin guanylate 97.1 0.00038 8.3E-09 48.9 3.0 22 21-42 3-24 (180)
485 PF03205 MobB: Molybdopterin g 97.1 0.00038 8.3E-09 46.9 2.8 22 21-42 2-23 (140)
486 PRK13833 conjugal transfer pro 97.1 0.0004 8.6E-09 53.3 3.2 26 17-42 142-167 (323)
487 PF07728 AAA_5: AAA domain (dy 97.1 0.00042 9.1E-09 46.5 2.9 22 21-42 1-22 (139)
488 PRK13949 shikimate kinase; Pro 97.1 0.00043 9.3E-09 48.2 3.0 22 21-42 3-24 (169)
489 smart00072 GuKc Guanylate kina 97.1 0.00064 1.4E-08 48.0 3.9 23 21-43 4-26 (184)
490 PRK14531 adenylate kinase; Pro 97.1 0.00047 1E-08 48.7 3.1 22 20-41 3-24 (183)
491 cd01120 RecA-like_NTPases RecA 97.1 0.0018 3.8E-08 44.3 5.9 21 22-42 2-22 (165)
492 PRK07667 uridine kinase; Provi 97.1 0.001 2.2E-08 47.4 4.8 38 5-42 3-40 (193)
493 cd02036 MinD Bacterial cell di 97.1 0.0088 1.9E-07 41.7 9.5 66 69-140 64-129 (179)
494 PF02367 UPF0079: Uncharacteri 97.1 0.00082 1.8E-08 44.0 3.8 35 9-43 5-39 (123)
495 cd03222 ABC_RNaseL_inhibitor T 97.1 0.00051 1.1E-08 48.2 3.0 27 17-43 23-49 (177)
496 cd04178 Nucleostemin_like Nucl 97.1 0.0025 5.3E-08 44.6 6.3 53 93-148 1-53 (172)
497 COG0552 FtsY Signal recognitio 97.1 0.0025 5.5E-08 48.5 6.7 143 16-179 136-328 (340)
498 PRK00625 shikimate kinase; Pro 97.1 0.00056 1.2E-08 47.8 3.1 22 20-41 1-22 (173)
499 cd02025 PanK Pantothenate kina 97.1 0.00044 9.6E-09 50.3 2.6 21 22-42 2-22 (220)
500 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00056 1.2E-08 49.7 3.2 28 16-43 27-54 (218)
No 1
>KOG0084|consensus
Probab=100.00 E-value=3.2e-39 Score=219.50 Aligned_cols=173 Identities=28% Similarity=0.377 Sum_probs=151.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.++..+||+++|+.|||||+|+.||....|. .+..|+|+.+...++.+ +++.+++++|||+|+++|++...+|+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccC
Confidence 457789999999999999999999999999997 67899999888888877 7899999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE-EEEeeeec
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY-IQATCAIT 170 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 170 (202)
++++|+|||+++.+||..+.+|+.++.++ ...+.|.++||||+|+.+.......+. ..++...+.+ ++++||++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a----~~fa~~~~~~~f~ETSAK~ 156 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEA----QEFADELGIPIFLETSAKD 156 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHH----HHHHHhcCCcceeecccCC
Confidence 99999999999999999999999998887 566899999999999987654333322 1233456677 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+.||++.|..+...+.+++..
T Consensus 157 ~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 157 STNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred ccCHHHHHHHHHHHHHHhccc
Confidence 999999999999998877543
No 2
>KOG0092|consensus
Probab=100.00 E-value=8.7e-38 Score=211.71 Aligned_cols=169 Identities=25% Similarity=0.357 Sum_probs=148.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+|++++|+.++|||||+.|+..+.|.+. .+|+|.-+....+.+ ....++|.||||+|+++|.++-+.|+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 3578999999999999999999999999865 899998888877777 56689999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++.+||..+..|+.++.+.. .+++-+.+||||+|+.+. ...++.+.+ +...+..|+++||+++.|
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~y------Ae~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAY------AESQGLLFFETSAKTGEN 154 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHH------HHhcCCEEEEEecccccC
Confidence 99999999999999999999999884 478888999999999874 344444443 356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1315 174 LHEGINELYQLILKKRKLQK 193 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~~ 193 (202)
++++|..|.+.+........
T Consensus 155 v~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHHHHhccCcccccc
Confidence 99999999999987765544
No 3
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.5e-36 Score=213.62 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=141.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|+.|||||||+++|.+..+. ++.++.+..+....+.. ++..+.+++||++|++++..++..+++++|+
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 456799999999999999999999998875 45567777665555544 5567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++|+.+..|+..+... .++.|++|||||+|+.... ..++.+.. +...++++++|||++|.
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~------a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAY------AERNGMTFFEVSPLCNF 153 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHH------HHHcCCEEEEecCCCCC
Confidence 99999999999999999888888654 3589999999999996543 33333332 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhh
Q psy1315 173 GLHEGINELYQLILKKRKLQKTNKM 197 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~~~~~~~ 197 (202)
||+++|+++.+.+..++.+.+.++.
T Consensus 154 ~V~~~F~~l~~~i~~~~~~~~~~~~ 178 (189)
T cd04121 154 NITESFTELARIVLMRHGRPPQSPP 178 (189)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999988877765554443
No 4
>KOG0094|consensus
Probab=100.00 E-value=1.7e-36 Score=205.53 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=147.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.+|++|+|+.+||||||+++++++.|. .+.+|+|+.+-..++.+ .+..+.+++|||+|+|+|.++.+.|++++.+
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 446699999999999999999999999997 77899998887777766 6789999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|||+++..||++...|+....++....+..+++||||.||.+..+....+.... +...+..|+++||+.|+||
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k----Akel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK----AKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH----HHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999986666799999999999998766555554322 2345678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
.++|..|...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999888876553
No 5
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.3e-34 Score=204.29 Aligned_cols=179 Identities=46% Similarity=0.814 Sum_probs=143.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...+.++... -.++.+||+++|++|||||||++++..+.+..+.||.+.+...+ +...+.+++||+||++.
T Consensus 1 m~~~~~~~~~~~--~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~-----~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRL--FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-----EYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHh--cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEE-----EECCEEEEEEECCCCHH
Confidence 785555554222 13566999999999999999999999888877788888766543 34568899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..+|..+++++|++|+|||+++++++.....++..........+.|++||+||+|+.+.....++...+..... ....
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~-~~~~ 152 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 152 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-CCCc
Confidence 999999999999999999999999999988888877765434458999999999999877766666666554322 1234
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.+++|||++|+|++++|++|.+.+.+
T Consensus 153 ~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999888764
No 6
>KOG0080|consensus
Probab=100.00 E-value=6.6e-36 Score=196.45 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=147.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc-ccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT-IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
+.+...+||+++|..|+|||||+.+|..+.|.+..|+ +|+.+......+ ++..+++.+|||+|+++|+++.++|++.+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccC
Confidence 3567789999999999999999999999999876665 898888888877 78899999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
.++|+|||++.+++|..+..|+.++-.+...+++..++|+||+|..++......+. ..+++.+.+-|++|||++.+
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG----~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEG----LKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHH----HHHHHhhCcEEEEcchhhhc
Confidence 99999999999999999999998888776777888999999999775443322222 23446678899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||+..|++++..+.+..
T Consensus 161 ~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETP 177 (209)
T ss_pred cHHHHHHHHHHHHhcCc
Confidence 99999999999987653
No 7
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=2.4e-34 Score=203.42 Aligned_cols=177 Identities=63% Similarity=1.071 Sum_probs=142.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||++++.+..+..+.||.+.+.........+...+.+.+|||||++.+...+..+++++|++|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877778888777666654434467899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|+++++++.....|+..+.......+.|+++|+||+|+.......+....+..........++++++||+++.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999998898888777776654344579999999999997665555566555433332334578999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy1315 178 INELYQLILKKRKLQKT 194 (202)
Q Consensus 178 ~~~l~~~~~~~~~~~~~ 194 (202)
+++|.+.+.+.++....
T Consensus 162 ~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 162 LEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999988766554433
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=7.7e-35 Score=207.87 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+.|+++|+.|||||||++++..+.|. .+.+|.+..+....+.. ++..+.+++||++|++++..++..+++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 46999999999999999999999886 45678776666555544 55679999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+.+...+ ...++.+++|||++|.||++
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ-----QITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHH
Confidence 9999999999999887765443 4568999999999999654332 22222211 12356899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|+++++.+.+.
T Consensus 154 ~F~~l~~~~~~~ 165 (202)
T cd04120 154 IFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 9
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4.4e-34 Score=201.78 Aligned_cols=179 Identities=46% Similarity=0.801 Sum_probs=143.0
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...+.++.... .++.+||+++|++|||||||++++..+.+..+.||.+.+...+ +...+.+.+||+||++.
T Consensus 1 ~~~~~~~~~~~~~--~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~-----~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLF--GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETV-----EYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEE-----EECCEEEEEEECCCCHh
Confidence 7866655543332 2456999999999999999999998888877778888766543 23568899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..++..+++++|++|+|+|+++++++.....++..........+.|++||+||.|+.+.....++...+..... ....
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~-~~~~ 152 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSV-RQRN 152 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcc-cCCc
Confidence 999999999999999999999999999998888887765433457899999999999776555566555554322 3345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.++++||++|.|++++|++|.+.+.+
T Consensus 153 ~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 153 WYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999987764
No 10
>KOG0078|consensus
Probab=100.00 E-value=4.9e-35 Score=201.86 Aligned_cols=170 Identities=25% Similarity=0.315 Sum_probs=145.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
+.+...+||+++|++|||||+|+.+|..+.|. ....|+|+.+...++.. ++..+.+++|||+|++++.++..+|++.|
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 37889999999999999999999999999886 66788898888877776 67889999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++|||+++..||+++..|+..+... ...++|.++||||+|+........-+. ..++...+++|+++||++|.
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~g----e~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERG----EALAREYGIKFFETSAKTNF 160 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHH----HHHHHHhCCeEEEccccCCC
Confidence 9999999999999999999977777665 566999999999999987443322222 12335568999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
||++.|-.|.+.+..+.
T Consensus 161 NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKL 177 (207)
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999888643
No 11
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=5e-34 Score=200.47 Aligned_cols=173 Identities=47% Similarity=0.853 Sum_probs=139.6
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||......+ .++.+||+++|++|||||||++++..+.+..+.||.+....... ...+.+.+||+||++.
T Consensus 1 ~~~~~~~~~------~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 1 MGKLFSKLF------GNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVT-----YKNISFTVWDVGGQDK 69 (175)
T ss_pred Cchhhhhhc------CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEE-----ECCEEEEEEECCCChh
Confidence 676544332 24569999999999999999999988777777788887665443 3468899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||++++++++....++..+.......+.|++||+||+|+.+.....++...+..... ....
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 148 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI-RDRN 148 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcccc-CCCc
Confidence 999999999999999999999999999999988888776533457899999999999776555566665544332 2345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999998765
No 12
>KOG0394|consensus
Probab=100.00 E-value=1.2e-35 Score=199.53 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=145.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....+||+++|++|+|||||++++.+.+|. .+..|+|..+.+..+.+ +...+.++||||+|+++|.++...+++.+|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCc
Confidence 4567899999999999999999999999997 67899998888888877 688899999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcC-cceEEEEEee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNN-MHLYYIQATC 167 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~S 167 (202)
++++|||++++.||+.+..|-.+.+.+.. ....|+||+|||+|+.+.. ..+.-.. ..+|. ..++|+|++|
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A----q~WC~s~gnipyfEtS 159 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA----QTWCKSKGNIPYFETS 159 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH----HHHHHhcCCceeEEec
Confidence 99999999999999999999988887643 2368999999999997632 2211111 23433 4689999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh
Q psy1315 168 AITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+...||++.|+.+.+.......
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ccccccHHHHHHHHHHHHHhccc
Confidence 99999999999999998876654
No 13
>KOG0098|consensus
Probab=100.00 E-value=6.1e-35 Score=196.53 Aligned_cols=167 Identities=25% Similarity=0.327 Sum_probs=146.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+...+|++++|+.|||||+|+.++..+.|. ....|+|+.+-.-.+.+ +...+++++|||+|++.+.+...+|++.+.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 456899999999999999999999999996 45678888887777777 7899999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|||++++++|..+..|+..+.+. ..++..+++|+||+||...+.....+. ..+++.++..++++||++++|+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEG----eaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEG----EAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHH----HHHHHHcCceeehhhhhhhhhH
Confidence 99999999999999999999999887 467999999999999977654443333 2355678899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+|+|......+++.
T Consensus 157 EEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 157 EEAFINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888755
No 14
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=7.3e-34 Score=198.29 Aligned_cols=161 Identities=47% Similarity=0.864 Sum_probs=134.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++....+..+.||.+.+..... ...+.+++||+||++++...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEE-----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4579999999999999999999998887777788887665333 35688999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++.....++..........+.|+++|+||+|+.+....+++...++.... ....++++++||++|.|+++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc-CCCcEEEEEeeCCCCCChHH
Confidence 99999999999999888888776533457899999999999776666677776554332 22346799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 15
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=201.86 Aligned_cols=175 Identities=22% Similarity=0.250 Sum_probs=137.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+. .+.+|.+.++. ....+ ++..+.+.+|||||++++..++..+++.+|++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 34689999999999999999999998875 55677665553 22223 45678899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||++++++|+.+..|+..+.......+.|+++|+||+|+.+... ..+..... ...+.+++++||++|.|
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSFGIPFLETSAKQRVN 154 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHhCCEEEEeeCCCCCC
Confidence 99999999999999998888877654455889999999999865432 22222221 22356899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 174 LHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++++|+++++.+.+.-++...+...+
T Consensus 155 i~~~~~~l~~~l~~~~~~~~~~~~~~ 180 (189)
T PTZ00369 155 VDEAFYELVREIRKYLKEDMPSQKQK 180 (189)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99999999998876654444443333
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.2e-34 Score=199.40 Aligned_cols=164 Identities=22% Similarity=0.279 Sum_probs=130.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.++.++ .+.|+.+..+. ..... ++..+.+.+||+||++++..++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 479999999999999999999999886 55677764443 22222 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.......+. ..++...++++++|||++|.||+++
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~----~~~a~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEG----RNLAREFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHH----HHHHHHhCCEEEEEecCCCCCHHHH
Confidence 999999999999988776665543345899999999999865433221111 1122344679999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 178 INELYQLILKK 188 (202)
Q Consensus 178 ~~~l~~~~~~~ 188 (202)
|+++++.+.+.
T Consensus 156 f~~l~~~~~~~ 166 (172)
T cd04141 156 FHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999887753
No 17
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1e-33 Score=197.45 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=131.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++++...+..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999998886 44667776665554444 5567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|+.+..|+..+... ..++.|+++|+||+|+..... .++.... +...++++++|||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~e~Sa~~~~~i~ 153 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF------ADENGLLFLECSAKTGENVE 153 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH------HHHcCCEEEEEECCCCCCHH
Confidence 99999999999999888776554 345789999999999976533 2333332 22346789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++|+++.+.+.+
T Consensus 154 e~f~~l~~~~~~ 165 (166)
T cd04122 154 DAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 18
>KOG0079|consensus
Probab=100.00 E-value=1.3e-34 Score=187.91 Aligned_cols=170 Identities=23% Similarity=0.333 Sum_probs=147.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...++.+++|++|+|||||+.+|..+.|. .+..|+|+.+...++++ ++..++++|||++|++.|+.+...|++..
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 34566788999999999999999999999887 67888999988888888 78999999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++|||+++.+||.+..+|+.++..+ .+..|-|+||||.|+++........+ ..++...++.+|++|+++++
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dA----r~~A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDA----RAFALQMGIELFETSAKENE 155 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHH----HHHHHhcCchheehhhhhcc
Confidence 9999999999999999999999998876 44899999999999987643332222 23445678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++..|.-|.+++.+.+.
T Consensus 156 NvE~mF~cit~qvl~~k~ 173 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAKL 173 (198)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 999999999998877663
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-33 Score=200.45 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=133.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.+..+. .+.+|.+..+....+....+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998875 45788877665555544225678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCC--CcCHHHHHHHhCchhhcCcce-EEEEEeeeecCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPN--AIQIKQIEKLLGLYELNNMHL-YYIQATCAITGD 172 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 172 (202)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....++..... ...+ .++++|||++|.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC------KENGFIGWFETSAKEGI 154 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCceEEEEeCCCCC
Confidence 99999999999988877665431 235789999999999973 33444444433 2223 679999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|++.+.+...
T Consensus 155 ~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 155 NIEEAMRFLVKNILANDK 172 (201)
T ss_pred CHHHHHHHHHHHHHHhch
Confidence 999999999998876543
No 20
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-33 Score=199.08 Aligned_cols=166 Identities=23% Similarity=0.363 Sum_probs=132.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc---------cccceEEEEEEcCCCCCchhhHH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG---------KCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
++.+||+++|++|||||||++++.++.+. .+.++.+..+........ ....+.+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35699999999999999999999998886 456777765554433321 13468899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++++|++|+|||+++++++..+..|+..+.......+.|+++|+||+|+.+... ....... +...+++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~ 155 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL------ADKYGIPYF 155 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH------HHHcCCeEE
Confidence 99999999999999999999999999888876654445789999999999975432 2233322 233456899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++||++|.|++++|+++.+.+.++
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877643
No 21
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=4e-33 Score=192.96 Aligned_cols=158 Identities=50% Similarity=0.890 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|.+|||||||++++..+.+..+.||.+.....+. ...+.+.+||+||++++...+..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEE-----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999988888777888887664433 35688999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|++++.++.....++..+.........|+++|+||+|+.+.....++...+..... ....+.++++||++|.|++++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-CCCCEEEEEeeCCCCCCHHHHHH
Confidence 99999999999888888765434457899999999999765444454444433222 23456788999999999999999
Q ss_pred HHHH
Q psy1315 180 ELYQ 183 (202)
Q Consensus 180 ~l~~ 183 (202)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9864
No 22
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.2e-33 Score=196.61 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=126.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||+.++..+.|. .+.||.+..+. ..+.. ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 68999999999999999999999986 56788875553 23333 56779999999999999999999999999999999
Q ss_pred EeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCc------------CHHHHHHHhCchhhcCcceE-EEE
Q psy1315 99 IDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAI------------QIKQIEKLLGLYELNNMHLY-YIQ 164 (202)
Q Consensus 99 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~ 164 (202)
||+++++||+.+ ..|+..+... .++.|+++||||+|+.+.. ..++.+. ++...+. +++
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~------~a~~~~~~~~~ 151 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE------LRKQIGAAAYI 151 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH------HHHHcCCCEEE
Confidence 999999999998 5677766543 2479999999999996532 2222222 2233444 699
Q ss_pred EeeeecCCCHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+|||++|.||+++|+.+++.+
T Consensus 152 E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ECCCCcccCHHHHHHHHHHHH
Confidence 999999999999999999865
No 23
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=7.7e-33 Score=193.48 Aligned_cols=163 Identities=43% Similarity=0.746 Sum_probs=134.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|.+|||||||++++.+..+..+.||.+...... ....+.+.+||+||++++...+..+++++|++|+|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~-----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETV-----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEE-----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987777778877665433 3457889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
+++++++.....|+..+.......+.|+++|+||+|+.......++...+..........+.+++|||++|.|++++|++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999999898888765444568999999999997666666666655433322223467889999999999999999
Q ss_pred HHHHHHHH
Q psy1315 181 LYQLILKK 188 (202)
Q Consensus 181 l~~~~~~~ 188 (202)
|.+.+...
T Consensus 156 l~~~~~~~ 163 (169)
T cd04158 156 LSRQLVAA 163 (169)
T ss_pred HHHHHhhc
Confidence 99877654
No 24
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.4e-33 Score=197.50 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=128.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|++|||||||++++..+.+. .+.||.+..+. ..+.+ ++..+.+.+|||+|++++..+++.+++++|+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~ 79 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 79 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence 356789999999999999999999999886 56778775443 33333 5677899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||++++.+|+.+ ..|+..+... .++.|+++|+||+|+.+. ...++.+ .++...
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~------~~a~~~ 151 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA------NMAKQI 151 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH------HHHHHc
Confidence 9999999999999997 5676666553 357999999999998642 1222222 233445
Q ss_pred e-EEEEEeeeecCCC-HHHHHHHHHHHHH
Q psy1315 160 L-YYIQATCAITGDG-LHEGINELYQLIL 186 (202)
Q Consensus 160 ~-~~~~~~Sa~~~~~-v~~l~~~l~~~~~ 186 (202)
+ .+|++|||++|.| |+++|+.+++.+.
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 5 4899999999998 9999999988643
No 25
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6e-33 Score=200.15 Aligned_cols=169 Identities=26% Similarity=0.357 Sum_probs=136.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.+..+.. +.++.+..+....+....+..+.+++||+||++.+...+..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988864 457777666555554434556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|..+..|+..+.........|+++|+||+|+..... ....... +...+++++++||++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL------AKDLGMKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH------HHHhCCEEEEEeCCCCCCHH
Confidence 999999999999999888877654444678999999999976432 2233322 23345789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy1315 176 EGINELYQLILKKRKLQK 193 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~~~~ 193 (202)
++|++|.+.+.++....+
T Consensus 156 e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 156 EAFELLTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999998887754443
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=6.4e-33 Score=193.56 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=132.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 4689999999999999999999998876 45777777665555444 455689999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++++|..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA------DEYGIKFLETSAKANINV 153 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCCH
Confidence 999999999999999888777654 34579999999999997543 223333322 234568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|+++.+.+..
T Consensus 154 ~~~~~~i~~~~~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 27
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4.4e-33 Score=196.51 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=130.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|+.|||||||+++|.++.+. .+.||.+..+....+.. ++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 58999999999999999999999886 47889887776555544 45678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
||+++++++..+..|+..+... .....| ++|+||+|+..... ....... ...++...+.++++|||++|.|++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~--~~~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQ--ARKYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHH--HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877654 233566 68899999964211 1111111 112233445789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKKR 189 (202)
Q Consensus 176 ~l~~~l~~~~~~~~ 189 (202)
++|+++.+.+.+.+
T Consensus 156 ~lf~~l~~~l~~~~ 169 (182)
T cd04128 156 KIFKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998886543
No 28
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.3e-33 Score=192.79 Aligned_cols=157 Identities=23% Similarity=0.334 Sum_probs=127.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++.+..+. .+.++.+..+....+.. ++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 58999999999999999999998886 45788777665555544 45568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|..+..|+..+... ...+.|+++|+||+|+...... .+.... ++..+.++++|||++|.|+++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~------~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL------AKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH------HHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888777654 3447999999999999765432 222222 123447899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+|++|.+.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999864
No 29
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.9e-33 Score=193.18 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=128.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|++|||||||++++..+.+. .+.++.+..+. ..+.. ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 479999999999999999999988775 44566664433 23333 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++.+++.+..|+..+.......+.|+++|+||+|+...... ..... ++...+++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN------LARQWGCAFLETSAKAKINVN 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH------HHHHhCCEEEEeeCCCCCCHH
Confidence 9999999999999988888876545568999999999999754322 22222 122345789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|+++.+.+.
T Consensus 153 ~~~~~l~~~l~ 163 (164)
T cd04175 153 EIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999987664
No 30
>KOG0087|consensus
Probab=100.00 E-value=2.9e-33 Score=192.37 Aligned_cols=170 Identities=22% Similarity=0.324 Sum_probs=150.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...+||+++|++|+|||-|+.++..+.|. +..+|+|+...+....+ +++.++.+||||+|+++|+.....|++.+
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhccc
Confidence 46789999999999999999999999999996 77899999999988877 78999999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.++++|||+++..+|+.+.+|+.++... ..+++++++||||+||.+.. ..++.+. +++..+..|+++||..
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~------~Ae~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKA------FAEKEGLFFLETSALD 160 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHh------HHHhcCceEEEecccc
Confidence 9999999999999999999999999887 56799999999999997633 3333333 3356778999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
..|+++.|+.++..+.+...+
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 999999999999888766443
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.4e-32 Score=196.92 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=135.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
++..++|+++|++|||||||+++|.+..+. .+.+|.+..+....+.. .+..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 456899999999999999999999998875 56788877666555544 4566789999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++|..+..|+..+... ....|++||+||+|+..... ..+..... ...+.+++++||++|.
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~ 153 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFA------GQMGISLFETSAKENI 153 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEECCCCc
Confidence 99999999999999999888877654 34789999999999975432 22233222 2335789999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+...++
T Consensus 154 gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 154 NVEEMFNCITELVLRAKK 171 (199)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 999999999998876543
No 32
>KOG0086|consensus
Probab=100.00 E-value=3.7e-33 Score=182.16 Aligned_cols=170 Identities=22% Similarity=0.340 Sum_probs=149.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.+...+|++++|+.|+|||+|+++|+..++. ...+|+|+.+...-+.+ .++.++++||||+|+++|++....|++.
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 456778899999999999999999999999886 66899998877766666 6789999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+.+.++|||++++++|..+..|+.....- ..+++-+++++||.|+..+.+....+. ..++..+.+.+.++||++|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEA----s~FaqEnel~flETSa~TG 156 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEA----SRFAQENELMFLETSALTG 156 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHH----Hhhhcccceeeeeeccccc
Confidence 99999999999999999999999887665 577899999999999998877665555 3555667789999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKK 188 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~ 188 (202)
+|++|.|-...+.+..+
T Consensus 157 eNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 157 ENVEEAFLKCARTILNK 173 (214)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999998888877654
No 33
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-32 Score=195.95 Aligned_cols=167 Identities=30% Similarity=0.360 Sum_probs=135.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.. +.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 589999999999999999999998864 6788876665554444 45578899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++|..+..|+..+... .....|+++|+||+|+.+... ....... +...+++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSF------CDSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHH------HHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999999888777654 334689999999999875432 2222222 122356899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy1315 177 GINELYQLILKKRKLQKT 194 (202)
Q Consensus 177 l~~~l~~~~~~~~~~~~~ 194 (202)
+|+++.+.+.++....+.
T Consensus 153 ~f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 153 AFILLVKLIIKRLEEQEL 170 (188)
T ss_pred HHHHHHHHHHHHhhcCcC
Confidence 999999999876655444
No 34
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=4.1e-32 Score=190.46 Aligned_cols=173 Identities=47% Similarity=0.789 Sum_probs=152.3
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
.++++.... .+.++|+++|..|||||||++++.......+.||.|++...+.+ ..+.+.+||.+|+..+...|+
T Consensus 3 ~~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~-----~~~~~~~~d~gG~~~~~~~w~ 76 (175)
T PF00025_consen 3 SVLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKY-----KGYSLTIWDLGGQESFRPLWK 76 (175)
T ss_dssp HHHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEE-----TTEEEEEEEESSSGGGGGGGG
T ss_pred HHHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeee-----CcEEEEEEeccccccccccce
Confidence 344444333 78999999999999999999999988777889999988887765 567899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|++++|++|+|+|.++++.+......+..+.......+.|++|++||+|+.+.....++...+.+..+.....+.++.|
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 99999999999999999999999998888888765666899999999999999888888998888777755678899999
Q ss_pred eeecCCCHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLI 185 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~ 185 (202)
||.+|+|+.+.++||.+++
T Consensus 157 sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHhcC
Confidence 9999999999999999864
No 35
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.4e-32 Score=191.73 Aligned_cols=161 Identities=40% Similarity=0.686 Sum_probs=132.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
...++|+++|++|||||||++++.+..+..+.+|.+.....+.+ +.+.+.+||+||++.+..++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~-----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEY-----EGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEE-----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999988776777888865555443 3578999999999998899999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++|.|+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI-SSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc-CCCceEEEeccCCCCcCHHH
Confidence 99999999999988888877765434468999999999999776655666665543221 34568899999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|+++.+
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999864
No 36
>KOG0093|consensus
Probab=100.00 E-value=3.2e-33 Score=181.22 Aligned_cols=170 Identities=23% Similarity=0.303 Sum_probs=143.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
.+...-+|+.++|+..+|||||+.++.+..|. ....|.|+.+...++-. ....+.+++|||.|++.++.+...+++.+
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 34556789999999999999999999999985 66788898877776533 55679999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|+|||++|.+||..+..|...+... .-.+.|+|+|+||||+.+++....... ..+....++.||++||+.+.
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g----~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERG----RQLADQLGFEFFETSAKENI 169 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHH----HHHHHHhChHHhhhcccccc
Confidence 9999999999999999999999988776 556899999999999987654332221 12234557789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|+.++|+.++..+.+..
T Consensus 170 nVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKM 186 (193)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.2e-32 Score=191.85 Aligned_cols=159 Identities=22% Similarity=0.311 Sum_probs=128.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....... ++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 79999999999999999999999885 45677776555444433 45668999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++++.+..|+..+... .....|+++|+||+|+.+... ........ ...+++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA------DQLGFEFFEASAKENINVKQ 153 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence 9999999999999888776554 344789999999999975432 22222221 23356899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (165)
T cd01865 154 VFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 38
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.1e-32 Score=197.40 Aligned_cols=163 Identities=25% Similarity=0.345 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|.+|||||||+++|.++.+..+.+|.+..+....+ ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 58999999999999999999999987777887766544432 4578999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC---------------------cCHHHHHHHhCchh----
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA---------------------IQIKQIEKLLGLYE---- 154 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------------------~~~~~~~~~~~~~~---- 154 (202)
|++++++|..+..|+..+... ...+.|+++|+||+|+.+. ...++.........
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 999999999999998887664 3457899999999999651 11222222211000
Q ss_pred ----hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 155 ----LNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 155 ----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
......++|++|||++|.||+++|+.+++.+...
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001126899999999999999999999877644
No 39
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1e-32 Score=192.84 Aligned_cols=164 Identities=26% Similarity=0.364 Sum_probs=129.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++.++.+. .+.||.+..+....+.. ++..+.+++||+||++++..++..+++++|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 7999999999999999999999886 66788887766554444 456789999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|+++++++..+..|+..+.........|+++|+||+|+............. ..+....+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA--IKLAAEMQAEYWSVSALSGENVREFFF 158 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH--HHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999888887665334467899999999986542211111100 011122346789999999999999999
Q ss_pred HHHHHHHH
Q psy1315 180 ELYQLILK 187 (202)
Q Consensus 180 ~l~~~~~~ 187 (202)
.+.+.+.+
T Consensus 159 ~l~~~~~~ 166 (170)
T cd04108 159 RVAALTFE 166 (170)
T ss_pred HHHHHHHH
Confidence 99988753
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1e-32 Score=192.46 Aligned_cols=160 Identities=21% Similarity=0.344 Sum_probs=130.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+..+....+.. ++..+.+++||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999875 55677777665555544 45678999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCC----CCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDN----FNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
||+++++++..+..|+..+...... ...|+++|+||+|+.... ...+..... ...+++++++||++|.
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA------ESKGFKYFETSACTGE 153 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH------HHcCCeEEEEECCCCC
Confidence 9999999999998888887665332 579999999999997432 233332221 2334689999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLIL 186 (202)
Q Consensus 173 ~v~~l~~~l~~~~~ 186 (202)
|++++|++|.+.+.
T Consensus 154 gi~~l~~~l~~~l~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.1e-32 Score=196.23 Aligned_cols=166 Identities=22% Similarity=0.290 Sum_probs=127.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|+.|||||||+.++..+.|. .+.||.+..+.. .... ++..+.+.+|||+|++++..+++.+++++|++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 3589999999999999999999999885 567887754432 2223 566789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHH----h---CchhhcCcce-EEEEEe
Q psy1315 97 FVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKL----L---GLYELNNMHL-YYIQAT 166 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~----~---~~~~~~~~~~-~~~~~~ 166 (202)
+|||++++++|+.+.. |...+... .++.|+++|+||+|+.+.... ..+... . ....++...+ +++++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999975 55444432 347999999999999654221 111110 0 0011223334 689999
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.||+++|+++++.+..
T Consensus 158 SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 42
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-32 Score=200.14 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=131.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+.-..+||+++|++|||||||+++|....|. .+.||.+..+.. .+.+ ++..+.+.+|||+|++.+..+.+.+++++|
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 3446789999999999999999999999886 567887755532 3333 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCc
Q psy1315 94 GIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 158 (202)
++|+|||++++++|..+ ..|+..+... .++.|+++|+||+|+... ...++.+ .++..
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~------~~a~~ 158 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC------ALAKQ 158 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH------HHHHH
Confidence 99999999999999985 6777766654 247899999999998642 1222222 23344
Q ss_pred ceE-EEEEeeeecCC-CHHHHHHHHHHHHHHH
Q psy1315 159 HLY-YIQATCAITGD-GLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~-~~~~~Sa~~~~-~v~~l~~~l~~~~~~~ 188 (202)
.++ +|++|||++|. ||+++|+.++..+.++
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 566 69999999998 8999999999988764
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=9.8e-33 Score=191.78 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++..+.+. .+.+|.+..+ ...... ++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 379999999999999999999988875 3456654222 222222 4566889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++++.+..|+..+.......+.|+++|+||+|+.+... ....... ....+.+++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL------ARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH------HHHcCCeEEEecCCCCCCHH
Confidence 999999999999998888877654456899999999999865322 2222221 12234789999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 153 ~l~~~l~~~~ 162 (163)
T cd04136 153 EVFADLVRQI 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 44
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.6e-32 Score=191.29 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=131.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++...+. .+.++.+.......+.. +...+.+.+|||+|++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 58999999999999999999987765 56788887777666544 45678999999999999988889999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
||+++++++..+..|+..+.... .+.|+++|+||+|+........... +.....++++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT------FHRKKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH------HHHHcCCEEEEEeCCCCCChHHHH
Confidence 99999999999988888877653 2899999999999974332222221 223456789999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 179 NELYQLILK 187 (202)
Q Consensus 179 ~~l~~~~~~ 187 (202)
++|.+.+.+
T Consensus 152 ~~l~~~~~~ 160 (166)
T cd00877 152 LWLARKLLG 160 (166)
T ss_pred HHHHHHHHh
Confidence 999988865
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-32 Score=199.26 Aligned_cols=162 Identities=23% Similarity=0.276 Sum_probs=135.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++..+.+. .+.+|.+.++....+.. +...+.+.+||++|++.+..++..+++++|++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 67899999999999999999999988885 56888888877766644 45568999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
|+|||++++++|..+..|+..+... ..+.|+++|+||+|+..... ...+ . +....++++++|||++|.|+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~------~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-T------FHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-H------HHHhcCCEEEEcCCCCCCCH
Confidence 9999999999999999888887654 34799999999999864322 2222 1 12335678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|++|.+.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988654
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.7e-32 Score=191.27 Aligned_cols=160 Identities=27% Similarity=0.365 Sum_probs=130.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+.......... .+..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 479999999999999999999998875 44677676655555444 4556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++|..+..|+..+... ...+.|+++|+||+|+..... ..+..... ...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFA------DELGIPFLETSAKNATNVE 153 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHH------HHcCCeEEEEECCCCcCHH
Confidence 99999999999999888877654 345789999999999865432 23333322 2346789999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|+++.+.+.
T Consensus 154 ~~~~~i~~~~~ 164 (166)
T cd01869 154 QAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 47
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=2.4e-32 Score=189.31 Aligned_cols=159 Identities=43% Similarity=0.776 Sum_probs=132.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++|||||||++++.+..+..+.|+.+.+...+.. ...+.+.+||+||+..+...+..++.++|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQL----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEe----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 5899999999999999999999887777888776655443 345789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.......++...+....++...++++++|||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99999999988888887765344589999999999997665566666555444444446678999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.3e-32 Score=193.21 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.++.|. .+.||.+..+. ..... ++..+.+.+||++|++++...+..+++++|++|+
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 379999999999999999999999884 66788775553 22223 4567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcCcc-eEEEEEee
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNNMH-LYYIQATC 167 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~S 167 (202)
|||++++++|+.+.. |+..+... .++.|+++|+||+|+.+.....+...... ...++... .+++++||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 156 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 999999999999975 55444332 34799999999999865421111000000 00112223 37899999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|++|.|++++|+.++.+.
T Consensus 157 A~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 157 ALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998753
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.4e-32 Score=197.88 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=130.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.+..+. .+.+|.+..+....+...+...+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998886 56788887665555544233568999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++|+.+..|+..+..... ....|+++|+||+|+.+... ....... ....+++++++||++|+|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~------~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF------AQANGMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH------HHHcCCEEEEEECCCCCCH
Confidence 999999999999888877766432 23578999999999965332 2222222 1234568899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|+++.+.+...
T Consensus 155 ~~lf~~l~~~l~~~ 168 (215)
T cd04109 155 NLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 50
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-32 Score=193.89 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|++|||||||++++.++.++ .+.||.+..+. ..+.+ ++..+.+.+|||+|++.+..+.+.+++++|++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 479999999999999999999999886 55677765443 23333 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcceE-
Q psy1315 98 VIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMHLY- 161 (202)
Q Consensus 98 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~- 161 (202)
|||+++++||+.+ ..|+..+... .++.|+++|+||+|+.+. ...++.+ .++...++
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~------~~a~~~~~~ 150 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC------AIAKQLGAE 150 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH------HHHHHhCCC
Confidence 9999999999996 5676666554 358999999999998642 1122222 23344554
Q ss_pred EEEEeeeecCCC-HHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDG-LHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~-v~~l~~~l~~~~~ 186 (202)
++++|||++|+| |+++|..+++...
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHHHh
Confidence 899999999995 9999999998543
No 51
>KOG0073|consensus
Probab=100.00 E-value=1.2e-31 Score=176.92 Aligned_cols=176 Identities=39% Similarity=0.651 Sum_probs=157.9
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
++++...+ .+.++|.++|..|+||||++++|.+.......||.|+...+..+ +.+.+++||.+|+..+++.|..
T Consensus 6 ilrk~k~k-erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~-----~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 6 ILRKQKLK-EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY-----KGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred HHHHHHhh-hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe-----cceEEEEEEcCCcchhHHHHHH
Confidence 44444333 34999999999999999999999999888889999999888875 6788999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
|+..+|++|+|+|.+++.++++....+..++.....-+.|++|++||.|+......+.+...+.+..+.+.+.++++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999988888877666668999999999999999999999998888888888999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|.+|+++.+-++|+.+.+.++.
T Consensus 160 ~~tge~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999888754
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.5e-33 Score=196.10 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=126.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|.++.+. .+.++.+..+... ....++..+.+.+|||||++++...++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999998886 4456655544332 222125678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCc------CHHHHHHHhCchhhcCcceE-EEEEeeeec
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAI------QIKQIEKLLGLYELNNMHLY-YIQATCAIT 170 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (202)
||++++++|+.+.. |+..+... ..+.|+++|+||+|+.... ...+.+.. +...+. ++++|||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~------~~~~~~~~~~e~Sa~~ 151 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV------AKKQGAFAYLECSAKT 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH------HHHcCCcEEEEccCCC
Confidence 99999999999875 54444332 3478999999999986532 22222222 122334 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh
Q psy1315 171 GDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
|.|++++|+.+.+.+...+...
T Consensus 152 ~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 152 MENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred CCCHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999998776554
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2e-32 Score=194.80 Aligned_cols=163 Identities=22% Similarity=0.262 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||+++|.++.+. .+.++.+..+.. .... ++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 5899999999999999999988875 345666543322 2222 455678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|++++++|+.+..|+..+..... ..+.|+++|+||+|+...... ..... +....+++++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~------~~~~~~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA------LARRLGCEFIEASAKTNVNVE 152 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH------HHHHhCCEEEEecCCCCCCHH
Confidence 99999999999988877755422 357899999999999654332 22222 112335689999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1315 176 EGINELYQLILKKRKL 191 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~~ 191 (202)
++|+++.+.+.+++..
T Consensus 153 ~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 153 RAFYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999988766543
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.7e-32 Score=189.69 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|+|||||++++..+.+.. +.++.+ ......... ++..+.+.+||+||++++..++..+++++|++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 4799999999999999999999988864 345543 223333333 4566789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+.......+.|+++|+||+|+...... ...... +...+.+++++||+++.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL------AEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH------HHHhCCEEEEecCCCCCCHH
Confidence 9999999999999988888776544468999999999998653222 122221 12234689999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998653
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.5e-32 Score=188.70 Aligned_cols=159 Identities=23% Similarity=0.301 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.. +.++.+..+ ...... ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 589999999999999999999888753 345544222 222222 45578899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ......... ...+.+++++||++|.|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA------RQWGCPFLETSAKERVNVDE 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH------HHcCCEEEEeecCCCCCHHH
Confidence 9999999999999888877665445579999999999997543 222222222 22347899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|++|.+.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T smart00173 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.5e-32 Score=187.73 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=127.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+.+ ..++.+.+........ +...+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 589999999999999999999988753 3455555555444444 45678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
||++++.++..+..|+..+... .++.|+++|+||+|+.... ..+... ++...+++++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~------~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN------FAEKHNLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH------HHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888777553 3478999999999985321 111111 122335789999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 179 NELYQLILKKR 189 (202)
Q Consensus 179 ~~l~~~~~~~~ 189 (202)
+.+.+.+.+++
T Consensus 151 ~~l~~~~~~~~ 161 (161)
T cd04124 151 QDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
No 57
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.1e-32 Score=193.34 Aligned_cols=162 Identities=22% Similarity=0.359 Sum_probs=131.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++++...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 58999999999999999999998875 45677776665544433 4567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++++++.+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+.+++++||++|.|++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~------~~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA------KEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH------HHcCCeEEEEeCCCCCCHH
Confidence 99999999999998888777654 34478999999999996432 222322221 2345689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKKR 189 (202)
Q Consensus 176 ~l~~~l~~~~~~~~ 189 (202)
++|++|.+.+....
T Consensus 153 ~l~~~l~~~~~~~~ 166 (191)
T cd04112 153 LAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987774
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.3e-32 Score=188.40 Aligned_cols=163 Identities=25% Similarity=0.320 Sum_probs=132.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+. ...++.+.+.....+.. ++..+.+.+||+||++++......+++.+|++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999998875 34566676665555544 45567899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++++++..+..|+..+... ..++.|+++|+||.|+.... ......... ...+.+++++||+++.|
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFA------KEHGLIFMETSAKTASN 153 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877665 34689999999999997432 233333322 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
++++|.++.+.+.+
T Consensus 154 i~~~~~~~~~~~~~ 167 (168)
T cd01866 154 VEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 59
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.1e-32 Score=195.50 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=127.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+|+|++|||||||+++|.+..|+ .+.||.+..+. ..+.+ ++..+.+.+|||+|++.+..+++.+++++|++|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 379999999999999999999998887 56788875553 33333 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHH-------HhCchhhcCcce-EEEEEeee
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEK-------LLGLYELNNMHL-YYIQATCA 168 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~-------~~~~~~~~~~~~-~~~~~~Sa 168 (202)
|||++++++|+.+..+|...... ..++.|+++|+||+|+...... ..... ..+...++...+ .+|++|||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999997666554444 3458999999999999653210 00000 000112223344 58999999
Q ss_pred ecCCC-HHHHHHHHHHHHHHH
Q psy1315 169 ITGDG-LHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~-v~~l~~~l~~~~~~~ 188 (202)
+++.| |+++|+.++.+...+
T Consensus 158 k~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 158 RSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred CcCCcCHHHHHHHHHHHHHhc
Confidence 99985 999999999977654
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=9.4e-32 Score=186.52 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=125.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+. .+.++.+..+ ...... ++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 369999999999999999999988875 4556665433 222223 4556788999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|+++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA------KSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH------HHhCCeEEEecCCCCCCHHH
Confidence 99999999999998888887765445589999999999997532 222222221 23356899999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+|+++.+.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998654
No 61
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=7.4e-32 Score=195.23 Aligned_cols=166 Identities=22% Similarity=0.323 Sum_probs=136.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..+||+++|++|||||||+++|.+..+. .+.++.+.++....+.. .+..+.+.+||++|++++...+..+++.+++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 456799999999999999999999998876 56788887776666655 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... ..... +....+++++++||++|.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~------l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQA------LAEKEGLSFLETSALEAT 160 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHH------HHHHcCCEEEEEeCCCCC
Confidence 99999999999999998888776654 3457999999999998654332 22222 123356899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|++++|+++.+.+.+..
T Consensus 161 ~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 161 NVEKAFQTILLEIYHII 177 (216)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 62
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3e-31 Score=187.77 Aligned_cols=175 Identities=31% Similarity=0.431 Sum_probs=141.9
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+.+.++. +-....+.++|+++|.+|||||||++++.+..+..+.||.+.+...... ..+.+.+||+||+..+..
T Consensus 3 ~~~~~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 3 WFYDILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAI-----GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred HHHHHHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEE-----CCEEEEEEECCCCHHHHH
Confidence 4556666 4444566799999999999999999999998776666777665544432 457899999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc------C
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN------N 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~ 157 (202)
.+..++.++|++|+|+|+++++++.....++..+.......+.|+++|+||+|+.......++...+...... .
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccC
Confidence 9999999999999999999999998888888877664344589999999999998777777787777654321 1
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.....+++|||+++.|++++++||...
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 246679999999999999999999764
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.1e-32 Score=188.95 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=120.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+.++..+.+. .+.|+.+..+. ..... ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 479999999999999999999998885 55676653332 22333 5567899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHh-------CchhhcCcce-EEEEEee
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLL-------GLYELNNMHL-YYIQATC 167 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~-------~~~~~~~~~~-~~~~~~S 167 (202)
|||++++++|..+.. |+..+... .++.|+++|+||+|+.+... ........ ....++...+ +++++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 156 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEec
Confidence 999999999999875 55544433 34799999999999964321 11111100 0011122223 5899999
Q ss_pred eecCCCHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQL 184 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~ 184 (202)
|++|.|++++|+.+.+.
T Consensus 157 a~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 157 ALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ccccCCHHHHHHHHHHh
Confidence 99999999999998764
No 64
>KOG0095|consensus
Probab=100.00 E-value=1.6e-32 Score=178.64 Aligned_cols=167 Identities=23% Similarity=0.323 Sum_probs=143.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++-.+||+++|..|+|||+|++++..+-|+ ....|+|+.+...++.+ +++.+++++|||+|+++|++...+|++.++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 5777899999999999999999999999886 67899999999888888 789999999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++-..+|+-+..|+.++..+ ....+.-|+|+||.|+.+..+. ..+-. .+.......|+++||++-.
T Consensus 82 alilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qige-----efs~~qdmyfletsakea~ 155 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGE-----EFSEAQDMYFLETSAKEAD 155 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHH-----HHHHhhhhhhhhhcccchh
Confidence 999999999999999999999988776 4557788999999999876433 22222 2334456779999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
|++.+|..+.-.+...
T Consensus 156 nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISE 171 (213)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887666543
No 65
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=1.6e-31 Score=185.80 Aligned_cols=155 Identities=34% Similarity=0.563 Sum_probs=131.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+. .+.||.+..... + +...+.+.+||+||++.+...+..+++++|++|+|||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~--i---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVA--I---PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEE--E---eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 799999999999999999988764 567887765432 2 3567899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec------CCCH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT------GDGL 174 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v 174 (202)
.+++.++.....|+..+... ..+.|+++|+||+|+........+...+....++...++++++|||++ ++||
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 77 SADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 99999999988888877654 258999999999999887777777666666667667788999999998 9999
Q ss_pred HHHHHHHHH
Q psy1315 175 HEGINELYQ 183 (202)
Q Consensus 175 ~~l~~~l~~ 183 (202)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.2e-31 Score=186.75 Aligned_cols=160 Identities=26% Similarity=0.383 Sum_probs=130.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|||||||++++.+..+. .+.|+.+.++....+.. .+..+.+.+||+||++.+..++..+++.++++|
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 3589999999999999999999998875 56788877666655544 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA------EKNGLSFIETSALDGTNV 153 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHH------HHcCCEEEEEECCCCCCH
Confidence 999999999999999888777664 33468999999999986542 222333322 224568999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 175 HEGINELYQLI 185 (202)
Q Consensus 175 ~~l~~~l~~~~ 185 (202)
+++|+++.+.+
T Consensus 154 ~~l~~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 67
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.5e-31 Score=192.12 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=135.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
......+||+|+|++|||||||+++|.+..+..+.++.+.++....+.. ++..+.+.+||+||++++..++..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3566789999999999999999999999888777888887776655544 455688999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKN-NDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
++|+|||++++++|..+..+|...... ....+.|+++|+||+|+...... ....... ...+++++++||++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~SAk~ 161 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA------KEHGCLFLECSAKT 161 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH------HHcCCEEEEEeCCC
Confidence 999999999999999988765544332 22346899999999999754332 2222211 22356799999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKKR 189 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~ 189 (202)
+.|++++|++|.+.+.+..
T Consensus 162 ~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 162 RENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999887654
No 68
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=2.6e-31 Score=186.56 Aligned_cols=160 Identities=44% Similarity=0.732 Sum_probs=131.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.++|+++|++|+|||||++++..+.+..+.|+.+.++....+ +.+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVY-----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEE-----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999988887778888877654433 46889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|+++++++.....++..+.......+.|+++|+||+|+.......++...+..... ...+++++++||++|.|++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~-~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI-RDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc-cCCceEEEecccCCCCCHHHH
Confidence 9999999999888888877766534457999999999999775555555555442222 234678999999999999999
Q ss_pred HHHHHH
Q psy1315 178 INELYQ 183 (202)
Q Consensus 178 ~~~l~~ 183 (202)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.6e-31 Score=185.85 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=125.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|+|||||++++.+..+. .+.++.+..+. ..... ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 579999999999999999999988764 44555543322 22222 4556789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+..... ....... ....+++++++||++|.|++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL------ARKLKIPYIETSAKDRLNVD 153 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH------HHHcCCcEEEeeCCCCCCHH
Confidence 999999999999999888877654455899999999999965432 2222222 12335689999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04145 154 KAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 70
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=9.6e-32 Score=186.69 Aligned_cols=158 Identities=31% Similarity=0.470 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||+++|.+..++ .+.++.+.......+.. +...+.+.+||++|++.+..+...+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998886 56778777777777766 577889999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+++++||+.+..|+..+.... ..+.|++||+||.|+.+. ....+.+... ...+.+++++||+++.|+.++
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFA------KELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHH------HHTTSEEEEEBTTTTTTHHHH
T ss_pred cccccccccccccccccccccc-cccccceeeeccccccccccchhhHHHHHH------HHhCCEEEEEECCCCCCHHHH
Confidence 9999999999998888877663 357899999999999763 3333444432 344589999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 178 INELYQLIL 186 (202)
Q Consensus 178 ~~~l~~~~~ 186 (202)
|..+++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 71
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=3.9e-31 Score=184.42 Aligned_cols=158 Identities=35% Similarity=0.530 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++|||||||++++.+.....+.||.+.+...+. ...+.+++||+||++.+...+..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLR-----LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEE-----ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 489999999999999999998743467788887654433 356889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--cceEEEEEeeeecC------C
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN--MHLYYIQATCAITG------D 172 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~------~ 172 (202)
++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+....++. ...+++++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998888887654445899999999999988777777777666555542 24578999999998 8
Q ss_pred CHHHHHHHHHH
Q psy1315 173 GLHEGINELYQ 183 (202)
Q Consensus 173 ~v~~l~~~l~~ 183 (202)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 72
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-31 Score=186.34 Aligned_cols=160 Identities=25% Similarity=0.337 Sum_probs=126.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|++|+|||||++++.++.+.. +.++.+.......+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46899999999999999999999888763 4566665554444433 445578999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+..... ......... ......++++||++|.|+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-----KNGMLAVLETSAKESQNV 154 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEEECCCCCCH
Confidence 999999999999998888877654 345899999999999975432 222222211 122356899999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|+++.+.
T Consensus 155 ~~~~~~l~~~ 164 (165)
T cd01864 155 EEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 73
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=4.9e-31 Score=182.44 Aligned_cols=157 Identities=45% Similarity=0.786 Sum_probs=125.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|++++|||||++++....+..+.|+.+.+..... ...+.+++||+||++.+...+..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVT-----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEE-----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999988877766777776654432 356789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.+.....++...+..... ...+.+++++||+++.|++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL-KDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc-CCCcEEEEEeeccCCCCHHHHHHH
Confidence 9998888877777766655433457999999999999765544455444432222 234568999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 875
No 74
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.7e-31 Score=185.82 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=129.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|||||||++++.+..+.. ..++.+.......+.. ++..+.+.+||+||++++..++..+++.+|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 457999999999999999999999888864 4667776655444444 56778999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|+|||+++++++..+..|...+..... ..+.|+++|+||+|+... ....+.+.... .....+++++||++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 156 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-----ENGDYPYFETSAKDA 156 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-----HCCCCeEEEEECCCC
Confidence 999999999999999888877665422 247899999999998642 23334444322 122357899999999
Q ss_pred CCHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQL 184 (202)
Q Consensus 172 ~~v~~l~~~l~~~ 184 (202)
.|+.++|+++++.
T Consensus 157 ~~v~~~~~~~~~~ 169 (170)
T cd04116 157 TNVAAAFEEAVRR 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 75
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.2e-31 Score=185.49 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++++.+. .+.++.+.++.. .... +...+.+.+||+||++++..++..+++.+|++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 79999999999999999999998875 445666544422 2222 34568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++++.+..|+..+.... ...+.|+++|+||+|+..... ..+... ++...++++++|||++|.|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~------~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA------CATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH------HHHHhCCcEEEeecCCCCCH
Confidence 99999999999988876554421 225799999999999965332 222222 12234568999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|++|++.
T Consensus 154 ~~~f~~l~~~ 163 (165)
T cd04140 154 QELFQELLNL 163 (165)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.6e-31 Score=190.45 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=128.9
Q ss_pred EcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 25 LGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 25 ~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+|++|||||||+++++++.+. .+.+|.|.++....+.. +...+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 699999999999999988886 56788888887776655 5567899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 104 VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+.+|..+..|+..+... ..+.|+++|+||+|+.......+.. .++...++++++|||++|.||+++|++|.+
T Consensus 80 ~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 80 RVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred hHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999888877764 2489999999999986432211111 122345688999999999999999999999
Q ss_pred HHHHH
Q psy1315 184 LILKK 188 (202)
Q Consensus 184 ~~~~~ 188 (202)
.+.+.
T Consensus 152 ~i~~~ 156 (200)
T smart00176 152 KLIGD 156 (200)
T ss_pred HHHhc
Confidence 88654
No 77
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.7e-31 Score=185.29 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+..+....... ++..+.+++||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 58999999999999999999998875 45666666665555544 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+... ..++.|+++|+||+|+.... ...+..... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA------QENGLLFLETSALTGENVEE 152 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence 9999999999998887766543 35689999999999996532 223333322 22347899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+|+++.+.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 78
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.7e-31 Score=185.45 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|+|||||++++.++.+. .+.++.+..+....+... ....+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998775 456777766644444331 2556889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+... ..+.|+++|+||+|+..... ..+..... ...+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALA------KRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHH------HHcCCeEEEEECCCCCCHH
Confidence 99999999999998888776543 34899999999999965433 22222222 2345689999999999999
Q ss_pred HHHHHHHHH
Q psy1315 176 EGINELYQL 184 (202)
Q Consensus 176 ~l~~~l~~~ 184 (202)
++|++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.1e-31 Score=186.41 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=129.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch-hhHHhhhcCCCEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-PLWKSYTRCTDGII 96 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~d~~i 96 (202)
.++|+++|++|||||||++++....+. .+.++.+.......+.. ++..+.+.+||+||++++. .++..+++++|++|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 579999999999999999999988876 45677776665555544 4567899999999998876 57888999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeec---C
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAIT---G 171 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~ 171 (202)
+|||+++++++..+..|...+.......+.|+++|+||+|+..... ....+... ...++++++|||++ +
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~~ 154 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DAHSMPLFETSAKDPSEN 154 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HHcCCcEEEEeccCCcCC
Confidence 9999999999999998888777654456899999999999865433 22222222 23457899999999 8
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|..+++.+
T Consensus 155 ~~i~~~f~~l~~~~ 168 (170)
T cd04115 155 DHVEAIFMTLAHKL 168 (170)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 80
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.2e-32 Score=192.05 Aligned_cols=166 Identities=21% Similarity=0.211 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.||+++|++|||||||+++|.++.+. .+.||.+..+.. .... ++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 38999999999999999999999886 456776655432 2222 45568999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--------Cchhhc-CcceEEEEEeee
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--------GLYELN-NMHLYYIQATCA 168 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~Sa 168 (202)
||++++++|+.+.. |+..+... ..+.|+++|+||+|+............. ....++ ....+++++|||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 156 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSA 156 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999998864 55555443 3489999999999997653322110000 001111 123378999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++|.|++++|+++.+.+...+
T Consensus 157 k~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 157 KLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CcCCCHHHHHHHHHHHHhccc
Confidence 999999999999999887443
No 81
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.6e-31 Score=190.67 Aligned_cols=161 Identities=22% Similarity=0.288 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+||+++|++|+|||||+++|.++.+. .+.++.+..+....+.. ++..+.+.+||++|++++..++..+++++|++|+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 58999999999999999999998885 36778876665544544 4567889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc------CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI------QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|||++++.+++.+..|+..+... ..+.|+++|+||+|+.... ...+...+ ....+.+++++||+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~ 151 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDF------ADEIKAQHFETSSKTG 151 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHH------HHHcCCeEEEEeCCCC
Confidence 99999999999988777766553 3478999999999986432 11122222 1233567899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|+++.+.+.++.
T Consensus 152 ~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 152 QNVDELFQKVAEDFVSRA 169 (193)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
No 82
>PLN03108 Rab family protein; Provisional
Probab=99.98 E-value=5e-31 Score=190.19 Aligned_cols=165 Identities=25% Similarity=0.321 Sum_probs=133.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...+||+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45799999999999999999999988775 45677777665544444 45567899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||+++++++..+..|+..+... .....|+++|+||+|+.+.. ..++.+... ...+++++++||+++.|
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEHGLIFMEASAKTAQN 155 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999998888776554 34579999999999997643 333334332 23457899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++.+.++.
T Consensus 156 v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 156 VEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887543
No 83
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.98 E-value=6.8e-31 Score=182.33 Aligned_cols=157 Identities=42% Similarity=0.652 Sum_probs=125.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC--CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY--LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+|+++|++|||||||++++.+..+ ..+.||.+.+.... ....+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 589999999999999999998753 35678887655443 23568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.....++...+..... ....++++++||++|.|+++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~-~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI-KDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc-cCceEEEEEeeCCCCCchHH
Confidence 99999999988887777665532 1247999999999999776555555554443222 23356799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 84
>KOG0091|consensus
Probab=99.98 E-value=9.8e-32 Score=177.34 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=145.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++.+++|+.-+|||||++.+..+++++ ..||.|+.+..-.+.+..+..+++++|||+|+++++++..+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 356899999999999999999999999984 4799999888877777678889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCC-CCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNF-NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
++|||++|.+||+.+..|+.+.......+ ..-+.+||+|+|+.+.......+. ..++..++..|+++||++|.||
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa----EklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA----EKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH----HHHHHhcCceEEEecccCCCcH
Confidence 99999999999999999999887776644 555678999999987655433222 1234578889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1315 175 HEGINELYQLILKKRK 190 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~~ 190 (202)
++.|..|.+.+...-.
T Consensus 162 eEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876544
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=3.4e-31 Score=184.25 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=126.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+||+++|++|||||||++++... .+. .+.++.+..+.........+..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 443 567777777655555443456789999999999998999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.......... .+....+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQ----AFAQANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHH----HHHHHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887766542 47999999999999655332221110 11122346799999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
No 86
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.98 E-value=1.4e-30 Score=185.37 Aligned_cols=165 Identities=37% Similarity=0.563 Sum_probs=135.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...+..+|+++|++|||||||++++.+..+..+.|+.+.+...+.+ ....+.+||+||++.+...+..+++.+|+
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 89 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI-----GNIKFKTFDLGGHEQARRLWKDYFPEVDG 89 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEE-----CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3467899999999999999999999988877777777766554443 35789999999999888899999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh----------cCcceEEEE
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL----------NNMHLYYIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 164 (202)
+++|+|+++.+++.....++..+.......+.|+++|+||+|+.......+++..+..... ......+++
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999899888888888876544457999999999999876666777776654222 112456799
Q ss_pred EeeeecCCCHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+|||++++|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=7.3e-31 Score=182.39 Aligned_cols=159 Identities=26% Similarity=0.358 Sum_probs=130.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||++++.+..+.. +.++.+..+....... +...+.+.+||+||++++...+..+++++|++|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 4799999999999999999999998875 6777776665555544 5667899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++.....|+..+.... ..+.|+++|+||+|+.... ......... ...+.+++++||++|.|+.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYA------DENGLLFFETSAKTGENVN 152 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHH------HHcCCEEEEEECCCCCCHH
Confidence 999999999999998888776653 3689999999999987432 333333322 2234789999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 176 EGINELYQLI 185 (202)
Q Consensus 176 ~l~~~l~~~~ 185 (202)
++|++|.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=7.2e-31 Score=181.25 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=114.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++....+... .|+.+..... +.. ++..+.+.+||++|++. ..+++++|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~--i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE--VLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE--EEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 5899999999999999999998887643 3433332222 333 45668899999999865 3466889999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
||++++++|+.+..|+..+.......+.|+++|+||+|+... .. ..+.+...+ ...+++|++|||++|.||
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----DMKRCSYYETCATYGLNV 147 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----HhCCCcEEEEecCCCCCH
Confidence 999999999999989888876644467899999999998532 21 111212110 223578999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++|+.+.+.
T Consensus 148 ~~~f~~~~~~ 157 (158)
T cd04103 148 ERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 89
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.98 E-value=7.7e-31 Score=182.37 Aligned_cols=160 Identities=29% Similarity=0.405 Sum_probs=129.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+......+++.+|++|+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999988875 44566666665555544 45567899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||++++++++.+..|+..+... ..++.|+++|+||+|+.... ..+...... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 80 YDITNRESFENLKNWLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFA------EEHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHH------HHcCCeEEEEeCCCCCCHHH
Confidence 9999999999998887776665 23589999999999987532 333333332 23457799999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 177 GINELYQLILK 187 (202)
Q Consensus 177 l~~~l~~~~~~ 187 (202)
+++++.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 90
>KOG0070|consensus
Probab=99.97 E-value=5.7e-31 Score=178.12 Aligned_cols=180 Identities=50% Similarity=0.824 Sum_probs=163.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||...++++. ....++..+|+++|-.++||||++++|...+...+.||+|++...+.+ ..+.|++||.+|+++
T Consensus 1 MG~~~s~~~~--~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y-----kn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFS--GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY-----KNISFTVWDVGGQEK 73 (181)
T ss_pred Ccchhhhhhh--hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE-----cceEEEEEecCCCcc
Confidence 8888888765 445778999999999999999999999999998889999999999987 488999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
++..|..|+++.+++|+|+|.++++.+......+..+.........|+++.+||.|+++.....++.+.+.+..++. ..
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~ 152 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RN 152 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CC
Confidence 99999999999999999999999999999999999998886677999999999999999999999999998877744 77
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+..|+|.+|+|+.|.++|+.+.+..+
T Consensus 153 w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 153 WHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cEEeeccccccccHHHHHHHHHHHHhcc
Confidence 8899999999999999999999887643
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=1.9e-30 Score=180.03 Aligned_cols=158 Identities=27% Similarity=0.405 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. .+.++.+.++....+.. ....+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999998875 46777777666555444 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
||+++++++..+..|+..+.......+.|+++|+||+|+... ....+..... ...+++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA------RKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH------HHcCCEEEEEecCCCCCHHHH
Confidence 999999999999888877766655668999999999999743 2333333322 234678999999999999999
Q ss_pred HHHHHHH
Q psy1315 178 INELYQL 184 (202)
Q Consensus 178 ~~~l~~~ 184 (202)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9998865
No 92
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=2.6e-30 Score=178.76 Aligned_cols=157 Identities=52% Similarity=0.876 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
||+++|.+|||||||++++.+.....+.++.+.+.....+ ..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEE-----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999999876778888877666543 36789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
+++++++.....++..+.......+.|+++|+||+|+.......+....+..... ....++++++||++|.|++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI-LGRRWHIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc-cCCcEEEEEeeCCCCCCHHHHHHH
Confidence 9999999999888888877655568999999999999876655566655543211 335679999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
|..
T Consensus 155 l~~ 157 (158)
T cd00878 155 LLQ 157 (158)
T ss_pred Hhh
Confidence 875
No 93
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1e-30 Score=181.35 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++++..+. .+.++.+..+....+.. ++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998875 44666666555555544 34557899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA------KELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEEChhccccCccCHHHHHHHH------HHhCCEEEEEeCCCCCCHHH
Confidence 9999999999999888877655 23379999999999995432 222222221 23457899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+++++.+.
T Consensus 153 l~~~i~~~ 160 (161)
T cd01861 153 LFRKIASA 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 94
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.8e-30 Score=190.78 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=126.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++++++.+. .+.+|.+ .+....+.+ ++..+.+.+|||+|++.+..++..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 58999999999999999999998886 4566665 223333333 56678999999999999988888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccC--------CCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNN--------DNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+... ....++...+. ...++.++++||
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~-----~~~~~~~~evSA 153 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG-----GDENCAYFEVSA 153 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH-----hcCCCEEEEEeC
Confidence 99999999999988887775431 2347999999999999752 33344444332 123568999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLIL 186 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~ 186 (202)
++|.|++++|++|.....
T Consensus 154 ktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 154 KKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998653
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.3e-30 Score=186.09 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 90 (202)
+||+++|++|||||||++++.+..+. .+.|+.+.......... ++..+.+++|||||...+. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 58999999999999999999998886 45677664444333333 4566889999999965432 12334578
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEe
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+|++|+|||++++++|+.+..|+..+.... ...+.|+++|+||+|+..... ....+... .+..++++++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~ 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV-----RKSWKCGYLEC 154 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH-----HHhcCCcEEEe
Confidence 8999999999999999999988887776542 245799999999999965422 22222211 12346789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++|.|++++|+.+++.+..+.+
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999988876544
No 96
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.9e-30 Score=188.29 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc-CCCEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR-CTDGII 96 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~d~~i 96 (202)
+||+++|++|||||||+++|..+.+. .+.++.+.......+.+ ++..+.+.+||+||++ ......++. ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence 58999999999999999999888774 44555543443333333 4567889999999987 234445666 899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.+|..+..|+..+.......+.|+++|+||+|+...... .+.... +...+++++++||+++.|+
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~------a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC------AVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH------HHHcCCeEEEecCCCCCCH
Confidence 99999999999999888887766544458999999999999654332 222221 1233568999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|+++++.+...+
T Consensus 152 ~~l~~~l~~~~~~~~ 166 (221)
T cd04148 152 DELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887544
No 97
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=4.3e-30 Score=180.01 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=127.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+.++....... .+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 58999999999999999999998875 34566665554444433 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
||+++++++.....|...+..... ..+.|+++|+||+|+..+ ........... .....+++++||++|.|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-----SNGNIPYFETSAKEAIN 154 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCceEEEEECCCCCC
Confidence 999999999888777766554422 337999999999999742 23333333221 12237899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
++++|+++.+.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988765
No 98
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.1e-30 Score=183.46 Aligned_cols=161 Identities=22% Similarity=0.235 Sum_probs=119.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+.. +.++.+..+. ..... ++..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 5899999999999999999988863 4555443332 23333 4567889999999999999999999999999999999
Q ss_pred CCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHH-------hCchhhcCcce-EEEEEeeeec
Q psy1315 101 STDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKL-------LGLYELNNMHL-YYIQATCAIT 170 (202)
Q Consensus 101 ~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~-------~~~~~~~~~~~-~~~~~~Sa~~ 170 (202)
++++++|+.+.. |+..+... .++.|+++|+||+|+....... ..... .....++...+ .++++|||++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALT 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999875 55555443 3589999999999996532110 00000 00011222333 4899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLIL 186 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~ 186 (202)
|.|++++|+.+++.+.
T Consensus 157 ~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 157 QEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998764
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=3.1e-30 Score=180.16 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
++||+++|.+|||||||++++.++.+. .+.++.+..+ ...... ++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 478999999999999999999988875 4456655433 233223 4566889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcc-eEEEEEeeeecCCCH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMH-LYYIQATCAITGDGL 174 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 174 (202)
|||++++++++....|...+.......+.|+++++||+|+...... .+..... ... ..+++++||+++.|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS------QQWGNVPFYETSARKRTNV 152 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH------HHcCCceEEEeeCCCCCCH
Confidence 9999999999999888877766444558999999999998654322 2222211 122 378999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|+++...+.
T Consensus 153 ~~~f~~i~~~~~ 164 (168)
T cd04177 153 DEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 100
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.5e-30 Score=185.21 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=113.6
Q ss_pred ccEEEEEcCCCCCHHHHHH-HhhcCCC------CCccccccc-eeeEee--------cccccccceEEEEEEcCCCCCch
Q psy1315 19 SVHIVMLGLDSAGKTTALY-RLKFDQY------LNTVPTIGF-NCEKVK--------GQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
.+||+++|++|||||||+. ++.+..+ ..+.||.+. ..+... ..+ ++..+.+.+|||+|++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChh--
Confidence 5799999999999999995 5554433 234577652 222111 122 56679999999999875
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCC---------------------
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNA--------------------- 140 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------------- 140 (202)
.....+++++|++|+|||++++.||+.+.. |+..+... .++.|+++|+||+|+.+.
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 355678899999999999999999999975 65555443 247899999999998642
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
...++.+ .++...+++|++|||++|.||+++|+.++++
T Consensus 157 V~~~e~~------~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 157 LPPETGR------AVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cCHHHHH------HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1122222 2334556799999999999999999998864
No 101
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.97 E-value=1.4e-29 Score=177.58 Aligned_cols=169 Identities=41% Similarity=0.698 Sum_probs=135.8
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
.+++..+. .+.++|+++|++|||||||++++.+..+..+.++.|.+...+.. ....+.+||+||+..+...+..
T Consensus 4 ~~~~~~~~-~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-----~~~~~~~~D~~G~~~~~~~~~~ 77 (173)
T cd04155 4 LLRKLRKS-SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-----DGFKLNVWDIGGQRAIRPYWRN 77 (173)
T ss_pred HHHHhhcc-CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-----CCEEEEEEECCCCHHHHHHHHH
Confidence 34445444 34899999999999999999999998777777888876665554 3467999999999888888999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++++|+|+++..++.....++..........+.|+++++||+|+........+...+..... .....+++++|
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~S 156 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDL-RDRTWHIQACS 156 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCccc-CCCeEEEEEeE
Confidence 99999999999999998888888878777766544557999999999999776656666665554333 22345788999
Q ss_pred eecCCCHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQ 183 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~ 183 (202)
|++|+|++++|+||.+
T Consensus 157 a~~~~gi~~~~~~l~~ 172 (173)
T cd04155 157 AKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999875
No 102
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.3e-30 Score=180.89 Aligned_cols=160 Identities=19% Similarity=0.113 Sum_probs=124.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+.+||+++|++|||||||++++.+..+. .+.||.+..+....+.. ++..+.+.+||++|++.+..++..+++++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 35789999999999999999999998885 56788776655443433 4566789999999999998999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceE-EEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLY-YIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 171 (202)
+|+|||++++.+++.+..|+..+.. ..+.|+++|+||+|+.+.... ...+... ...+. .++++||+++
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFC------RKLGLPPPLHFSSKLG 151 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHH------HHcCCCCCEEEEeccC
Confidence 9999999999999988877765432 237999999999998654221 1112211 11222 3589999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.|++++|+.+.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998765
No 103
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.8e-30 Score=180.01 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+|++++|++|+|||||++++.+..+.. +.+|. .......... ++..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 689999999999999999999888764 44443 3333334444 45668899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHHHHHHhCchhhcCcce-EE
Q psy1315 99 IDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQIEKLLGLYELNNMHL-YY 162 (202)
Q Consensus 99 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 162 (202)
||++++++|+.+.. |+..+... .++.|+++|+||+|+.... ...+... ++...+ .+
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~------~a~~~~~~~ 150 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA------LAEKIGACE 150 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH------HHHHhCCCe
Confidence 99999999998864 55444432 3479999999999986432 1111221 222233 48
Q ss_pred EEEeeeecCCCHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+++|||++|.|++++|+.++-
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999998764
No 104
>KOG0081|consensus
Probab=99.97 E-value=6.9e-32 Score=177.33 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=146.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccc--------cccceEEEEEEcCCCCCchhhH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIG--------KCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
.+...+|++.+|++|+||||++.++..++|.. -..|.|+.+....+... ....+.+++|||+|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45677899999999999999999999998864 46777766655444331 2345789999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
..+++.+-+++++||+++..||.++++|+..+....+..+.-+|+|+||+|+.+.....+.+. ..++...++|+|+
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa----~~La~kyglPYfE 160 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA----AALADKYGLPYFE 160 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH----HHHHHHhCCCeee
Confidence 999999999999999999999999999999998888888999999999999988766655554 2455678999999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+||-+|.||++..+.+.+.+.++-.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887643
No 105
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=3.9e-30 Score=180.60 Aligned_cols=163 Identities=22% Similarity=0.232 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++.++.+. .+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 58999999999999999999998875 4455544222 223333 45567899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~Sa~ 169 (202)
||++++++|+.....|....... .++.|+++|+||+|+.+............ ...++. ....++++|||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999998875444444432 56899999999999865321111000000 001111 223479999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 106
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=4.4e-30 Score=178.86 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d~~ilv 98 (202)
||+++|++|||||||+++++...+. .+.++.+..+ ...... ++..+.+.+||+||++. .......+++.+|++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 6899999999999999999987775 4445543222 222222 55678899999999885 345677888999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC-CCH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG-DGL 174 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v 174 (202)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.... ...+..... ...+.+++++||+++ .|+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA------SELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH------HHcCCEEEEeCCCCCchhH
Confidence 999999999999888776665422 4479999999999986442 222222221 223468999999999 599
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
+++|+++.+.+.
T Consensus 153 ~~~f~~l~~~~~ 164 (165)
T cd04146 153 HSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988664
No 107
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.9e-29 Score=175.27 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+. ...++.+..+... ... ++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEE-EEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988775 3444444332222 222 45678899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|++++.++.....|+..+.......+.|+++|+||+|+... .......... ...+.+++++||+++.|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA------RQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH------HHhCCeEEEeeCCCCCCHHH
Confidence 999999999999988888877644558999999999999762 2233322222 22356899999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 177 GINELYQLIL 186 (202)
Q Consensus 177 l~~~l~~~~~ 186 (202)
+|+++.+.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T cd04139 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.7e-29 Score=176.03 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||++++.++.++...++..... ...... ....+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-Eeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998865443322111 222222 456689999999999888888888889999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce-EEEEEeeeecCCCHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL-YYIQATCAITGDGLHEGI 178 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~ 178 (202)
|++++.+++.+..+|....... ..+.|+++|+||+|+.+............. ....... .++++|||+++.|++++|
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRL-GVKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHH
Confidence 9999999999865554444432 237999999999999765442111111100 0001111 379999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+.+...+.
T Consensus 157 ~~~~~~~~ 164 (166)
T cd01893 157 YYAQKAVL 164 (166)
T ss_pred HHHHHHhc
Confidence 99988765
No 109
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.7e-29 Score=175.17 Aligned_cols=158 Identities=41% Similarity=0.615 Sum_probs=124.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+|+++|++|+|||||++++.+... ..+.+|.+.....+.+ +...+.+||+||++.+...+..+++.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 75 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-----GNARLKFWDLGGQESLRSLWDKYYAECH 75 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-----CCEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 589999999999999999976432 1335555555544443 3678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~ 172 (202)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.......+....+.... .......+++++||++|.
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 155 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGT 155 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCc
Confidence 9999999999888888888888877654456899999999999977666555555544221 112346789999999999
Q ss_pred CHHHHHHHHHH
Q psy1315 173 GLHEGINELYQ 183 (202)
Q Consensus 173 ~v~~l~~~l~~ 183 (202)
|+++++++|.+
T Consensus 156 gv~e~~~~l~~ 166 (167)
T cd04160 156 GVREGIEWLVE 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2e-29 Score=174.80 Aligned_cols=158 Identities=27% Similarity=0.325 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|+|||||++++++..+.. ..++............ .+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 589999999999999999999887753 3444444443333333 34557899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
||+++++++.....|+..+.... ..+.|+++|+||+|+..... ........ ...+.+++++|++++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYA------KSVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999888877766553 33799999999999975432 22333322 22356789999999999999
Q ss_pred HHHHHHHHH
Q psy1315 177 GINELYQLI 185 (202)
Q Consensus 177 l~~~l~~~~ 185 (202)
+++++.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
No 111
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.2e-29 Score=172.31 Aligned_cols=155 Identities=28% Similarity=0.425 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||++++.+..+... .++.+.++....... ....+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999999988754 777787777776655 44568899999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC--CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP--NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+++++++..+..|+..+... .....|+++|+||+|+. .....++..... ...+.+++++||+++.|+++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFA------KENGLLFFETSAKTGENVEE 152 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHH------HHcCCeEEEEecCCCCCHHH
Confidence 9999999999999887777665 33579999999999995 333444444433 23567899999999999999
Q ss_pred HHHHHH
Q psy1315 177 GINELY 182 (202)
Q Consensus 177 l~~~l~ 182 (202)
++++|.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999986
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.5e-29 Score=173.94 Aligned_cols=163 Identities=25% Similarity=0.304 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
++..++|+++|++|||||||++++.+..+. ...++.+.......+.. .+..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 456799999999999999999999977665 44566665444444433 4556789999999999999998999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+....... ..... +......+++++||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~-----~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEE-----FSDAQDMYYLETSAKESDN 156 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEeeCCCCCC
Confidence 99999999999999888777665443 33478999999999986543321 21111 1122346799999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLI 185 (202)
Q Consensus 174 v~~l~~~l~~~~ 185 (202)
++++|++|.+.+
T Consensus 157 v~~l~~~i~~~~ 168 (169)
T cd04114 157 VEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 113
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=1.7e-28 Score=169.33 Aligned_cols=156 Identities=28% Similarity=0.552 Sum_probs=126.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|++|||||||++++.+..+. .+.|+.+........ ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK-----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE-----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 799999999999999999998875 567777766654432 34789999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
++++.++.....++..+.......+.|+++|+||+|+.+..........+..... ....++++++|++++.|+++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI-TDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc-cCCceEEEEEEeccCCChHHHHHH
Confidence 9998889888888887766544458899999999998776555444444432222 234578999999999999999999
Q ss_pred HHH
Q psy1315 181 LYQ 183 (202)
Q Consensus 181 l~~ 183 (202)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 114
>KOG0395|consensus
Probab=99.97 E-value=2.1e-29 Score=178.29 Aligned_cols=164 Identities=24% Similarity=0.281 Sum_probs=138.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+||+++|.+|+|||+|..++++..|. .+.||++ +.+.....+ ++..+.+.|+||+|++++..+...+++++|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 4689999999999999999999999997 5678887 344444444 578889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+||+++++.||+.+..++..+.+.......|+++||||+|+..... .++-+.. +..+.++|+++||+.+.++
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l------a~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL------ARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH------HHhcCCcEEEeeccCCcCH
Confidence 9999999999999999999886665666789999999999987433 3332332 3566788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|..|.+.+...+
T Consensus 154 ~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 154 DEVFYELVREIRLPR 168 (196)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988733
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4.1e-29 Score=178.83 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++.+..+.. +.++.+ ......+.+ .+..+.+++||+||+..+..++..+++.+|++|+||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 68999999999999999999988764 345543 223333333 345678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
|++++.+++.+..|+..+.......+.|+++|+||+|+... ..... ....+ ......+.+++++||++|.|++++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~~--~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDALS--TVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHHH--HHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999888887777644458999999999999653 21111 11111 1111234678999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+++++.+.
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99998765
No 116
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=6.4e-29 Score=174.60 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.||+++|++|||||||++++.+..+. .+.++.+..+. ..+.. ++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 58999999999999999999998886 45566654432 22223 45668899999999999988888889999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~Sa~ 169 (202)
||++++++++.+...|...... ...+.|+++|+||+|+.............. ...++. ....++++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998886544433333 234789999999999865322111000000 001111 123579999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998654
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=6.8e-29 Score=173.74 Aligned_cols=160 Identities=25% Similarity=0.323 Sum_probs=117.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
+||+++|++|||||||+++|++..+. .+.++.. ......... .+..+.+++||+||++.+......+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 68999999999999999999998874 3444433 222222222 45678899999999998888888888999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH--------HHHHhCchhhcCc-ceEEEEEeeee
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ--------IEKLLGLYELNNM-HLYYIQATCAI 169 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~Sa~ 169 (202)
||++++.++......|...... ...+.|+++|+||+|+........ +..... ..+... ...+++++||+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~ 156 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRH-YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEG-EKLAKEIGAIGYMECSAL 156 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHH-HHHHHHhCCeEEEEeecC
Confidence 9999999998877655544433 234899999999999976543211 000000 011122 23489999999
Q ss_pred cCCCHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQ 183 (202)
Q Consensus 170 ~~~~v~~l~~~l~~ 183 (202)
+|.|+++++++|++
T Consensus 157 ~~~gi~~l~~~i~~ 170 (171)
T cd00157 157 TQEGVKEVFEEAIR 170 (171)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.7e-28 Score=173.27 Aligned_cols=162 Identities=23% Similarity=0.266 Sum_probs=128.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC-cccccccee-eEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNC-EKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.||+++|.+|+|||||++++.+..+.. +.|+.+... ..... ....+.+.+||+||++++...+..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRY---KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEE---CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 589999999999999999999887753 455554332 22222 3455788999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++..+++.+..++..+.......+.|+++|+||+|+.... ...+..... ...+.+++++||+++.|+.
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA------ESWGAAFLESSARENENVE 152 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH------HHcCCeEEEEeCCCCCCHH
Confidence 99999999999999998888876555688999999999986432 222222221 2234689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1315 176 EGINELYQLILKKRK 190 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~ 190 (202)
++++++.+.+...+.
T Consensus 153 ~l~~~l~~~~~~~~~ 167 (180)
T cd04137 153 EAFELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876654
No 119
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.7e-28 Score=173.85 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc----cccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG----KCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+||+++|++|||||||++++.+..+. .+.+|++.+......... ++..+.+++||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999886 457888865554433321 2456899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccC------------------CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNN------------------DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN 156 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 156 (202)
+|+|||+++++||+.+..|+..+.... ...+.|+++||||+|+.++......+.......++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999988876531 12478999999999997653333222222223344
Q ss_pred CcceEEEEEeeeecC
Q psy1315 157 NMHLYYIQATCAITG 171 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~ 171 (202)
.+.+.+.++.++..+
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 566777777777644
No 120
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.9e-28 Score=169.51 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
||+++|++|||||||++++++..+. ...++.+ ......+.. .+..+.+++||+||+..+...+..+++.+|++++||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999987764 3445544 333333333 344678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+++++++.....|+..+.........|+++|+||+|+.... ......... ...+.+++++|++++.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA------KEWGCPFIETSAKDNINIDEV 152 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH------HHcCCcEEEeccCCCCCHHHH
Confidence 999999999999998888776444689999999999997632 222333322 223378999999999999999
Q ss_pred HHHHHHH
Q psy1315 178 INELYQL 184 (202)
Q Consensus 178 ~~~l~~~ 184 (202)
+++|.+.
T Consensus 153 ~~~l~~~ 159 (160)
T cd00876 153 FKLLVRE 159 (160)
T ss_pred HHHHHhh
Confidence 9999865
No 121
>KOG0071|consensus
Probab=99.96 E-value=6.6e-28 Score=155.31 Aligned_cols=178 Identities=46% Similarity=0.806 Sum_probs=159.5
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||.-.++++.++- ..++++|+.+|-.++||||++..|.-.....+.||.|++..++++ ..+.|++||.+|+..
T Consensus 1 Mgn~~sk~~~k~f--~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty-----kN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIF--GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-----KNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHh--CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe-----eeeEEeeeeccCchh
Confidence 6765566554443 455999999999999999999999988888899999999999986 678899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
.+.+|.+|++...++|+|+|..+.+.++..++.+..++......+.|++|.+||.|+++...+.++++++++.. .+...
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~ 152 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRN 152 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCc
Confidence 99999999999999999999998899999999999998887778999999999999999999999999999877 46778
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+.+.++|+.+|.|+.|-|.|+.+.+.
T Consensus 153 W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 153 WYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cEeeccccccchhHHHHHHHHHhhcc
Confidence 89999999999999999999987653
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=8.9e-28 Score=174.09 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=134.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....+||+++|++|||||||+++++.+.+. .+.+|.+..+....+.. +...+.+.+||++|++.+...+..++..++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3456799999999999999999988877774 66788888877776654 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|+|||+++..++..+..|+..+... ..+.|+++|+||+|+............ ....++.++++||++|.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITF------HRKKNLQYYDISAKSNYN 155 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHH------HHHcCCEEEEEeCCCCCC
Confidence 999999999999999999888777654 247899999999998653222222221 123456899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|.+|.+.+..+.
T Consensus 156 v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 156 FEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999887653
No 123
>KOG0083|consensus
Probab=99.96 E-value=1.6e-30 Score=166.20 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=134.7
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDS 101 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 101 (202)
++|++++|||+|+-++..+-|. .-..|.|+.+....+.+ ++..+++++|||.|+++|++....|++.+|+++++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999888877764 44688888888887777 67889999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 102 TDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 102 ~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
.|..||++.+.|+.++..+ ....+.+.+++||+|+..+.....-.. ..+++..++||.++||++|.|++..|-.|
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg----~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDG----EKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchH----HHHHHHHCCCceeccccccccHhHHHHHH
Confidence 9999999999999988776 455788999999999966432221111 12234568999999999999999999999
Q ss_pred HHHHHHHHh
Q psy1315 182 YQLILKKRK 190 (202)
Q Consensus 182 ~~~~~~~~~ 190 (202)
.+.+.+.+.
T Consensus 156 a~~l~k~~~ 164 (192)
T KOG0083|consen 156 AEELKKLKM 164 (192)
T ss_pred HHHHHHhcc
Confidence 988876654
No 124
>KOG0088|consensus
Probab=99.96 E-value=2.5e-29 Score=165.21 Aligned_cols=169 Identities=24% Similarity=0.305 Sum_probs=137.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...-.+||+++|..=+|||||+-+++.++|... ..|.-..+....+.+ ......+.||||+|+++|..+-+.|++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 345679999999999999999999999988633 333333333344434 456788999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++++|||+++++||+.+..|..++..- ....+-+++|+||+|+..+......+. ..+++.-+..++++||+.+.|
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeA----e~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEA----EAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHH----HHHHHhhchhheecccccccC
Confidence 999999999999999999999988765 455788999999999977654433222 234466788899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
|.++|+.+...+.++-
T Consensus 163 i~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887764
No 125
>KOG0097|consensus
Probab=99.96 E-value=2.9e-28 Score=157.49 Aligned_cols=168 Identities=21% Similarity=0.307 Sum_probs=142.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
+-.++..+|.+++|+-|+|||+|++++...+|. +-.+++|+.+..-.+.+ .+..+++++|||.|+++|+....+|++.
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999986 55788887666655544 6888999999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+.++|||++.+..+..+..|+...... ..++..+++++||.|+..... .++.+. +++..+..|+++||+
T Consensus 84 aagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~------faeengl~fle~sak 156 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKE------FAEENGLMFLEASAK 156 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHH------HHhhcCeEEEEeccc
Confidence 99999999999999999999999887665 566888999999999976543 334444 345678899999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|+++.|-.....+.+.
T Consensus 157 tg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 9999999998888777755
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=7.8e-28 Score=170.76 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=119.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.||+++|++|+|||||++++....+.. ..++....+.. .... ++..+.+.+||++|++.+....+.++.++|++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ll 78 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILI 78 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEE
Confidence 3589999999999999999999777653 34444333221 2222 3456789999999998887777778899999999
Q ss_pred EEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCCcC------------HHHHHHHhCchhhcCcce-EEE
Q psy1315 98 VIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQ------------IKQIEKLLGLYELNNMHL-YYI 163 (202)
Q Consensus 98 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 163 (202)
|||++++++|..+.. |+..+... .++.|+++|+||+|+..... ..... .++...+ .++
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK------RVAKEIGAKKY 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH------HHHHHhCCcEE
Confidence 999999999999875 55554433 34799999999999854211 11111 1222233 479
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
++|||++|.|++++|+++.+.+..-++.
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 9999999999999999999877655543
No 127
>KOG0075|consensus
Probab=99.95 E-value=3.8e-27 Score=152.97 Aligned_cols=166 Identities=27% Similarity=0.506 Sum_probs=148.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
-+.++.+.++|-.++|||||++....+.+. ...|+.|++.+.++ ...+.+.+||.||++.+.++|..|++.+++
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t-----kgnvtiklwD~gGq~rfrsmWerycR~v~a 91 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRGVSA 91 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec-----cCceEEEEEecCCCccHHHHHHHHhhcCcE
Confidence 467899999999999999999999888886 45899999998886 367889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+++|+|+.+++.....+..+..++......+.|++|.|||.|+++......+...+.+... ....+-+|-+|+++..|+
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~si-tdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSI-TDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccc-ccceEEEEEEEEcCCccH
Confidence 9999999999999999999999988877889999999999999999888888887776555 445677999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+.+.+||++....
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
No 128
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.95 E-value=1.5e-26 Score=184.75 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=126.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchhh-HH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRPL-WK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~-~~ 86 (202)
..++|+++|.+|||||||+++|++..+....+..+++.......+ ..+...+.+|||||.. .+... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~-~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLI-ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEE-EECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 468999999999999999999999876545555555554433222 2344567899999952 22222 23
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++++|++|+|+|++++.++.... ++..+.. .+.|+|+|+||+|+.+..........+. ..+......+++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~~ 362 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREID-RELAQVPWAPRVNI 362 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHH-HhcccCCCCCEEEE
Confidence 4678999999999999887777654 3433333 3789999999999975432222222111 11112334688999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
||++|.|++++|+.+.+.+.....+.+++.+|++
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~ 396 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNAW 396 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 9999999999999999999999999999998865
No 129
>KOG4252|consensus
Probab=99.94 E-value=3.1e-28 Score=163.28 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=146.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
++....++..+|++++|..++||||++++++.+-|. .+..++|+.+-.-...+ ..+.+.+.+||++|++++..+...|
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHHHHH
Confidence 445667889999999999999999999999988886 67888887666555555 6778889999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++.+.+.++||+.++..||+....|...+.... ..+|.++|-||+|+.++.. ..+++... +..+..++.+
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la------k~l~~RlyRt 161 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA------KKLHKRLYRT 161 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH------HHhhhhhhhh
Confidence 999999999999999999999999999998863 4899999999999976533 23333322 3456789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
|+++..|+.++|.+|.+.+.+..++
T Consensus 162 Svked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 162 SVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876654
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.2e-25 Score=156.86 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch---------hhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------PLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~~ 90 (202)
.+|+++|.+|+|||||+++|.+..+.. .+..+.+........ ....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHF-DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEE-ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887632 111122211111111 2345789999999973210 11111123
Q ss_pred CCCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|+|++++.++ .....|+..+... ..+.|+++|+||+|+........... +......++++|||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa 150 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEE------EEELEGEEVLKIST 150 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHH------hhhhccCceEEEEe
Confidence 36899999999886653 5555565555433 24799999999999976543332222 12334678999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++++++.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 151 LTEEGVDEVKNKACELL 167 (168)
T ss_pred cccCCHHHHHHHHHHHh
Confidence 99999999999998865
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=7.4e-26 Score=159.56 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-------C-Cccc------cccceeeEeeccc----ccccceEEEEEEcCCCCCch
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-------L-NTVP------TIGFNCEKVKGQI----GKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-------~-~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~D~~G~~~~~ 82 (202)
+|+++|++++|||||+++|++... . .+.+ +.|.+........ .+...+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987421 1 1112 2233433222111 13456889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
..+..+++.+|++|+|+|+++..++.....|... .. .++|+++|+||+|+.+...........+ .+ ......
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~--~~-~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSADPERVKQQIED--VL-GLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcCCHHHHHHHHHH--Hh-CCCccc
Confidence 9999999999999999999987666555544332 22 2689999999999865332211111111 11 112235
Q ss_pred EEEeeeecCCCHHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++++||++|.|++++++++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998764
No 132
>KOG0393|consensus
Probab=99.94 E-value=8e-27 Score=161.87 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=131.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..+|+++||+.++|||+|+-.+..+.|+ .+.||.- ..+.....+.++..+.+.+|||.|+++|..+++..+..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 5689999999999999999999988887 5677764 4444444442478899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHH-------hCchhhc-CcceEEEEEee
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKL-------LGLYELN-NMHLYYIQATC 167 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~-------~~~~~~~-~~~~~~~~~~S 167 (202)
+||++.+++||+++...|...... ..++.|+|+||+|.||..+... +.+... .+...++ ......+++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999987655555554 3479999999999999853211 111100 0001111 23447899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++..|++++|+..+.......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999998886544
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.94 E-value=1.6e-25 Score=177.72 Aligned_cols=176 Identities=18% Similarity=0.259 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-----------H
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-----------W 85 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~ 85 (202)
...++|+++|.+|+|||||+++|++.......+..+++.......+ ......+.+|||||..+.... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPF-ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEE-EECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3468999999999999999999998876545555566655544433 234457899999996443221 2
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
..+++.+|++|+|+|++++.+..... .+...... +.|+++|+||+|+. +..........+. ..+.....++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~----~~~iiiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA----GKALVIVVNKWDLVKDEKTREEFKKELR-RKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc----CCcEEEEEECcccCCCHHHHHHHHHHHH-HhcccCCCCceE
Confidence 34678999999999999776655432 33333322 78999999999997 2222223333222 122233457899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++||++|.|++++|+++.+.+.....+.+++.+|+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRRISTSKLNR 357 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 99999999999999999999988888888777664
No 134
>KOG0072|consensus
Probab=99.94 E-value=5.4e-26 Score=147.16 Aligned_cols=181 Identities=38% Similarity=0.690 Sum_probs=156.4
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||.-.+.+.+.+.... .+.+|.++|-.|+|||++..++.-.....+.|++|++...+++ ++.++++||.+|+..
T Consensus 1 m~~g~~s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y-----KNLk~~vwdLggqtS 74 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY-----KNLKFQVWDLGGQTS 74 (182)
T ss_pred CCchHHHHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc-----ccccceeeEccCccc
Confidence 5666677777776554 8999999999999999999988888888889999999888875 667899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
....|..|+.+.|++|+|+|.+|.+...-....+..++.+....+..++|++||.|........++...+++..+ ....
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L-k~r~ 153 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL-KDRI 153 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH-hhhe
Confidence 999999999999999999999999988877777777777766778889999999999888888888877777666 3345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+|++||.+|+|+++.++|+.+.+..+
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 8999999999999999999999988654
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.3e-25 Score=157.07 Aligned_cols=159 Identities=23% Similarity=0.218 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----CchhhHHh---hhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----KLRPLWKS---YTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~---~~~~~d 93 (202)
.|+++|.+|||||||++++.+.... .....+.+...............+.+|||||.. ....+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999876531 111111121111110101223589999999953 22122233 345699
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDV-ERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|+|++++ ++++....|...+..... ..+.|+++|+||+|+.+........... .....+.+++++||+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL----LKELWGKPVFPISALTG 156 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH----HhhCCCCCEEEEecCCC
Confidence 99999999998 788887777666654321 2378999999999997654433322211 11113567899999999
Q ss_pred CCHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQL 184 (202)
Q Consensus 172 ~~v~~l~~~l~~~ 184 (202)
.|++++|+++.++
T Consensus 157 ~gi~~l~~~i~~~ 169 (170)
T cd01898 157 EGLDELLRKLAEL 169 (170)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 136
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=7.9e-25 Score=163.40 Aligned_cols=125 Identities=18% Similarity=0.318 Sum_probs=103.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccc------------cccceEEEEEEcCCCCCch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIG------------KCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~ 82 (202)
....+||+++|+.|||||||+++|++..+. .+.+|+|.++....+.+. ....+.++|||++|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 446799999999999999999999998885 557888877654333221 1246889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC-----------CCCCcEEEEeeCCCCCCC
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND-----------NFNVPILILANKQDLPNA 140 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~pvivv~nK~Dl~~~ 140 (202)
.++..+++++|++|+|||++++.+++.+..|+..+..... ....|++||+||+|+...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999888765421 125899999999999654
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=6.8e-25 Score=167.15 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=113.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRC 91 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ 91 (202)
-..|+++|.|+||||||++++.+.+. ...+...+|.......+.-.+...+.+||+||..+ +...+..++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 45799999999999999999997652 22222222333222211112445799999999532 22344456678
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHH--HHHHhCchhhcCcceEEEEEeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQ--IEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++++|+|+|+++.++++....|..++..... ..++|+++|+||+|+.+...... .+... ...+.+++++||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~------~~~~~~i~~iSA 310 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL------AALGGPVFLISA 310 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH------HhcCCCEEEEEc
Confidence 9999999999987788888877777655421 24789999999999976533221 11111 223467999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+++
T Consensus 311 ktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999887644
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=9.9e-25 Score=156.95 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=106.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCC---------chh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~ 83 (202)
.+..++|+++|++|||||||++++.+..+.. ..++.......+.+ .....+.+|||||... +..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 113 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL----PDGREVLLTDTVGFIRDLPHQLVEAFRS 113 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe----cCCceEEEeCCCccccCCCHHHHHHHHH
Confidence 4567899999999999999999999876421 12333333333322 2234799999999632 111
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+ ..+.++|++++|+|++++.++.....|...+.. ....+.|+++|+||+|+....... .. ......++
T Consensus 114 ~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~------~~~~~~~~ 182 (204)
T cd01878 114 TL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER------LEAGRPDA 182 (204)
T ss_pred HH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH------hhcCCCce
Confidence 11 235679999999999988887776544443332 234478999999999997653322 11 12345679
Q ss_pred EEeeeecCCCHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++||+++.|+++++++|.+.
T Consensus 183 ~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 183 VFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 999999999999999998765
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=7.8e-25 Score=167.83 Aligned_cols=161 Identities=18% Similarity=0.281 Sum_probs=111.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-chhh-------HHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPL-------WKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~-------~~~~ 88 (202)
.+.++|+++|.+|||||||+|+|++..+..+.+..+.|.......+ ..+...+.+|||||..+ +..+ ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~-~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGII-TLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEE-EeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4567999999999999999999999888666666655544333222 23456789999999743 2221 1234
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+..+|++++|+|..+ ++.....++....... +.|+++|+||+|+... ...+....+.. ......++++||
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~-~~~~~~~~l~~----~~~~~~i~~iSA 198 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK-YLNDIKAFLTE----NHPDSLLFPISA 198 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc-cHHHHHHHHHh----cCCCcEEEEEec
Confidence 678999999999764 4555544444443321 5688899999998654 23333333221 122367999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|+++++++|.+.+.+.
T Consensus 199 ktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred cCccCHHHHHHHHHHhCCCC
Confidence 99999999999999877544
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=1.9e-24 Score=150.72 Aligned_cols=158 Identities=22% Similarity=0.191 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc---cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.|+++|.+|+|||||+++|....+... ..+........... ......+.+|||||++.+...+..++..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAE--VLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecc--cCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 589999999999999999998876533 11221222222221 1246789999999999888888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh----cCcceEEEEEeeeecCCC
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL----NNMHLYYIQATCAITGDG 173 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|+++...... ...+..+.. .+.|+++|+||+|+..... ......+..... .....++++++|+++++|
T Consensus 80 v~d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 80 VVAADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred EEECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 999987432211 111222222 2789999999999875432 111111110000 012356899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLIL 186 (202)
Q Consensus 174 v~~l~~~l~~~~~ 186 (202)
+.+++++|.+...
T Consensus 154 i~~l~~~l~~~~~ 166 (168)
T cd01887 154 IDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987643
No 141
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=3.4e-24 Score=147.57 Aligned_cols=157 Identities=25% Similarity=0.320 Sum_probs=115.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|.+|+|||||++++.+..++ ...++.+.+.....+.. +...+.+.+||+||+..+...+..+.+.++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 479999999999999999999988854 33445444444433322 3334789999999999999999999999999999
Q ss_pred EEeCCCc-hhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDV-ERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
++|+... .++.... .+...+.... ..+.|+++|+||+|+............+. .....+++++||.++.|+.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFA-----KLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHh-----hccCCceEEeecCCCCCHH
Confidence 9998766 5565544 4444444432 22789999999999976543333333222 2334569999999999999
Q ss_pred HHHHHHH
Q psy1315 176 EGINELY 182 (202)
Q Consensus 176 ~l~~~l~ 182 (202)
+++++|.
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9999863
No 142
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.7e-24 Score=161.72 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYTRCT 92 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~~ 92 (202)
+|+++|.||||||||+|+|.+......++..++|...+.... ......+.+|||||..... .....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~-~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIH-TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEE-EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999887655555555444332222 2334579999999964321 1234567889
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH-HHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-IEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|++++|+|+++..+.. .++...... .+.|+++|+||+|+.+...... ...... .....+++++||++|
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~v~~iSA~~g 149 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI-----LEDFKDIVPISALTG 149 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh-----hcCCCceEEEecCCC
Confidence 9999999999766654 233333222 2789999999999964322111 111111 111237899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKK 188 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~ 188 (202)
.|++++++++.+.+...
T Consensus 150 ~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999999877544
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=150.32 Aligned_cols=150 Identities=21% Similarity=0.150 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC---CC-Cccc--cccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ---YL-NTVP--TIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~---~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
+.|+++|++|||||||+++|.+.. +. +..+ +....+....+ . ....+.+|||||++++......+++.+|
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~~~~DtpG~~~~~~~~~~~~~~ad 76 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL---P-SGKRLGFIDVPGHEKFIKNMLAGAGGID 76 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe---c-CCcEEEEEECCChHHHHHHHHhhhhcCC
Confidence 368999999999999999998643 22 1112 22222222222 1 1468999999999988777778888999
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcCcceEEEEEe
Q psy1315 94 GIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 94 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|+|+++ +++..... . .... ...|+++|+||+|+...... .++.+.+... ...+.+++++
T Consensus 77 ~ii~V~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 146 (164)
T cd04171 77 LVLLVVAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT---FLADAPIFPV 146 (164)
T ss_pred EEEEEEECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc---CcCCCcEEEE
Confidence 9999999986 22332221 1 1111 13499999999999764321 1222222110 1145789999
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
||+++.|++++++.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998754
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=1.4e-24 Score=155.02 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc--CCCCCc-------------cccccceeeEeecccccccceEEEEEEcCCCCCchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF--DQYLNT-------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 84 (202)
-+|+++|++++|||||+++|++ ..+... .++.+.+.......+ ....+.+.+|||||++++...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV-TYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE-EECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999997 333321 123344444333333 456788999999999999999
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCc-hhhcCcce
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGL-YELNNMHL 160 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~-~~~~~~~~ 160 (202)
+..+++.+|++++|+|+++. .+.....++..... .+.|+++|+||+|+....... ++...+.. .......+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999999863 22332333333322 278999999999997543222 22222210 01112346
Q ss_pred EEEEEeeeecCCCHHHH
Q psy1315 161 YYIQATCAITGDGLHEG 177 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l 177 (202)
++++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 78999999999887555
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=2.9e-24 Score=148.03 Aligned_cols=147 Identities=24% Similarity=0.301 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTRC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 91 (202)
++|+++|++|+|||||++++.+.......+..+.+........ ......+.+|||||...+.. .....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESI-DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEE-EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998875433344444433322222 23456899999999655432 13345678
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .......+++++||+++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEEEECCCC
Confidence 999999999998777766543322 337899999999999765433 11345678999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|+++++++|.+.+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988754
No 146
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.6e-25 Score=151.76 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc------hhhHHhhh--cC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT--RC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~ 91 (202)
++|+++|.|+||||||+|+|++.+ ......+|.|.......+ ......+.++|+||...+ ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~-~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIF-KLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEE-EETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEE-EecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999988 345556677776665544 445688999999994322 23344444 57
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHHHHhCchhhcCcceEEEEEee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.|++|+|+|+++.+.-.. ...++... ++|+++|+||+|+..... ...+.+ ..++|++++|
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~---------~Lg~pvi~~s 142 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSE---------RLGVPVIPVS 142 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHH---------HHTS-EEEEB
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHH---------HhCCCEEEEE
Confidence 999999999986443333 33333333 799999999999865432 222333 3467999999
Q ss_pred eecCCCHHHHHHHH
Q psy1315 168 AITGDGLHEGINEL 181 (202)
Q Consensus 168 a~~~~~v~~l~~~l 181 (202)
|++++|++++++.|
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999999875
No 147
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=3.4e-24 Score=170.41 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-----------hH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-----------LW 85 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~ 85 (202)
...++|+++|.+|+|||||++++++.......+..|++........ ......+.+|||||...... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPF-ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEE-EECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3579999999999999999999998876555666677766655444 34556789999999532111 12
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
..+++.+|++|+|+|++++.+..... .+..+... ++|+++|+||+|+.+..........+. ..+......++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~----~~~~ivv~NK~Dl~~~~~~~~~~~~~~-~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA----GRALVIVVNKWDLVDEKTMEEFKKELR-RRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc----CCcEEEEEECccCCCHHHHHHHHHHHH-HhcccccCCCEEE
Confidence 34678899999999999776655432 23333332 789999999999975433333333322 1222345678999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+||+++.|++++++.+.+.......+.++..+|+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNR 357 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHH
Confidence 9999999999999999999888887787777664
No 148
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=2e-24 Score=151.29 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=109.9
Q ss_pred CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCC
Q psy1315 46 NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
.+.||.|..+....+.. ++..+.+.||||||++++..++..+++++|++|+|||++++++|+.+..|+..+... ....
T Consensus 8 ~~~~Tig~~~~~~~~~~-~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~-~~~~ 85 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKD 85 (176)
T ss_pred CCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence 56788888887665555 567799999999999999999999999999999999999999999999888887765 2357
Q ss_pred CcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 126 VPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
.|+++|+||+|+.+.. ...+.... ....+..+++|||++|.|++++|++|.+.+.+..
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~~------~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQK------AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHHH------HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 8999999999996532 22232222 1233567899999999999999999999887644
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.8e-25 Score=159.45 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=103.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC-----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG-----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~ 84 (202)
....++|+++|.+|+|||||++++.+..+. .....+++........ . .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW---G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee---c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 346789999999999999999999987754 3333455555444422 2 589999999 3455556
Q ss_pred HHhhhc----CCCEEEEEEeCCCchhHHH---------HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHH
Q psy1315 85 WKSYTR----CTDGIIFVIDSTDVERMEE---------VKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKL 149 (202)
Q Consensus 85 ~~~~~~----~~d~~ilv~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~ 149 (202)
+..++. .++++++|+|.+....+.. ....+..... ..+.|+++|+||+|+.... ...++...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 156 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAER 156 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHH
Confidence 666654 3578888888764322100 0111122222 1278999999999986543 11222222
Q ss_pred hCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 150 LGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+.........+.+++++||++| |+++++++|.+.+.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 2210000112246899999999 99999999998875443
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=7.4e-24 Score=167.03 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=113.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~ 86 (202)
.....++|+++|++|+|||||+|+|++.....+.+..+++.+.....+ ..+...+.+|||||....... ..
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i-~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDF-ELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEE-EECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 455789999999999999999999998765544555565555444333 345677899999997654432 24
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++++|||++++.++... |+..... .+.|+++|+||+|+... .. .. +....+.+++++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~---~~------~~~~~~~~~~~v 341 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SL---EF------FVSSKVLNSSNL 341 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-ch---hh------hhhhcCCceEEE
Confidence 678899999999999988777654 5444432 37899999999999654 11 11 112234578899
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
||++ .|++++++.+.+.+.+.
T Consensus 342 Sak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEec-CCHHHHHHHHHHHHHHH
Confidence 9997 69999999999887654
No 151
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.92 E-value=3.7e-24 Score=178.36 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----------chhh-HH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRPL-WK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~ 86 (202)
..++|+++|.+|||||||+|+|++.......+..+++........ ..+...+.+|||||..+ +... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~-~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIV-EIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEE-EECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999998875433334444444433222 22344678999999532 1111 13
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++++|+|+++..+..... ++..+... ++|+++|+||+|+.+..........+.. .+......+++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~~----~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVDA----GRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc----CCCEEEEEEchhcCChhHHHHHHHHHHH-hccCCCCCCEEEE
Confidence 4478899999999999877776654 33333332 7899999999999764333333322221 1112234678999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 167 CAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
||++|.|++++++.+.+.+.+..++.+++.+|++
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~ 635 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAF 635 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHH
Confidence 9999999999999999999988888888887754
No 152
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=7.9e-24 Score=153.85 Aligned_cols=170 Identities=31% Similarity=0.381 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.+||+++|++|||||||+++|.+..+.. +.++.+..+....... ....+.+.+|||+|++++...+..|+..++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4899999999999999999999999874 4556554444443322 2337889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH-----------HHHHhCchhhcCcceEEEEEe
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-----------IEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 166 (202)
|+|..+..++......|............|+++|+||+|+........ .................++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998666666665555444443335799999999999976532111 000000001111123338999
Q ss_pred eee--cCCCHHHHHHHHHHHHHHHH
Q psy1315 167 CAI--TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 167 Sa~--~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++ ++.++.++|..+...+.+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886553
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.2e-24 Score=147.74 Aligned_cols=134 Identities=23% Similarity=0.176 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-----CchhhHHhhhcCCCEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-----KLRPLWKSYTRCTDGI 95 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~d~~ 95 (202)
||+++|++|||||||+++|.+..+. +.+|.+.. + . -.+|||||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~-----~---~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----Y-----N---DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----E-----c---CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 22332211 1 1 1689999973 2333333 47899999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
|+|||++++.++... .| .... ..|+++|+||+|+.+. ...+......+ .....+++++||++|.|+
T Consensus 67 ilv~d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLE-----TAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEEecCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHH-----HcCCCcEEEEecCCCCCH
Confidence 999999998887542 23 2221 2499999999998653 22222233221 112237899999999999
Q ss_pred HHHHHHHH
Q psy1315 175 HEGINELY 182 (202)
Q Consensus 175 ~~l~~~l~ 182 (202)
+++|+++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 154
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=5.4e-24 Score=145.41 Aligned_cols=154 Identities=33% Similarity=0.440 Sum_probs=117.0
Q ss_pred EEcCCCCCHHHHHHHhhcCCC-C-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQY-L-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDS 101 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 101 (202)
++|++|+|||||++++.+... . ...++. .......... ......+.+||+||...+...+..+++.+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV-DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE-CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999998876 3 333443 5555555533 34567899999999888888888899999999999999
Q ss_pred CCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 102 TDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 102 ~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+++.++.....++..........+.|+++|+||+|+............ .........+++++|+.++.|+.+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA---EQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH---HHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 999888888877444433335668999999999999765444332200 11123456889999999999999999998
Q ss_pred H
Q psy1315 182 Y 182 (202)
Q Consensus 182 ~ 182 (202)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=9.7e-24 Score=168.71 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=113.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~ 86 (202)
+.....+|+++|.+|||||||+|+|.+.......++.|++........ ......+.+|||||.+. +...+.
T Consensus 34 ~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 34 EGGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDA-EWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEE-EECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 334568999999999999999999998876656667777766555543 34456789999999652 334566
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.+++.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +...... ...+. .+++
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~~--~~~~~~~-----~g~~~-~~~i 179 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGEA--DAAALWS-----LGLGE-PHPV 179 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccch--hhHHHHh-----cCCCC-eEEE
Confidence 77899999999999998765543 222222222 2799999999999864321 1111111 11222 3689
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.|++++|+++.+.+.+
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999988754
No 156
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=7.4e-24 Score=162.32 Aligned_cols=176 Identities=19% Similarity=0.280 Sum_probs=137.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchh-hHH
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRP-LWK 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~-~~~ 86 (202)
..++|+++|.|++|||||+|++++....-..+..|+|.+.+.... ..+...+.++||.|.. .|.. -..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~-e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEF-ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeE-EECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999999999888999999999999877 5677889999999932 2221 244
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
..+..+|.+++|+|++.+ +......+..+... .+.++|+|.||||+.+. .........+.. .+......+++
T Consensus 256 ~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a~i~ 329 (444)
T COG1160 256 KAIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFAPIV 329 (444)
T ss_pred hHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHH-HhccccCCeEE
Confidence 557889999999999954 33333333333332 28999999999999775 333333333332 33345678899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
++||+++.|++++|+.+.+.......+.+++.+|++
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~ 365 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRRISTSLLNRV 365 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 999999999999999999999999999999999875
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=7.7e-24 Score=167.76 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=111.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
....++|+++|.+|+|||||+|+|.+.......+..+.+.+.....+ ......+.+|||||....... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i-~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHI-NLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEE-EECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999998775444445555544433333 334567999999997654322 334
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++++|++++|+|++++.++..... +.. ..+.|+++|+||+|+....... .....+++++|
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~i~iS 351 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------------EENGKPVIRIS 351 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------------hccCCceEEEE
Confidence 6788999999999998877765432 222 2378999999999997543321 12245789999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++++++.+.+..
T Consensus 352 Aktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 352 AKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 158
>KOG0076|consensus
Probab=99.92 E-value=6.1e-25 Score=146.73 Aligned_cols=169 Identities=41% Similarity=0.616 Sum_probs=144.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--------CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
..+..+.|+++|..++|||||+.+.-.... ....+|.|.+...+.+ . ...+.+||.+|++..+++|.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v---~--~~~l~fwdlgGQe~lrSlw~ 87 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV---C--NAPLSFWDLGGQESLRSLWK 87 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee---c--cceeEEEEcCChHHHHHHHH
Confidence 345679999999999999999988753211 2346778888877776 2 55789999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|+..++++|+++|+++++.|+.....+..+..+....+.|+++.+||.|+.+.....++...+.+.........++.++
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999999999888888877776677999999999999999988888888877544445577899999
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
||.+|+||++-.+|++..+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999998876
No 159
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=2.1e-23 Score=145.95 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-----------hhHHh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-----------PLWKS 87 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~~ 87 (202)
.++|+++|++|+|||||++++++.......+..+.+........ ......+.+||+||..... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPF-EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEE-EECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999998765433333333333322211 2234568899999964321 11233
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.+..+|++++|+|++++.+..... .+..... .+.|+++|+||+|+.... ........+.. .+......++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 154 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRR-KLPFLDYAPIVF 154 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHh-hcccccCCceEE
Confidence 567899999999999876654432 2222222 268999999999997652 23333333221 121223578999
Q ss_pred eeeecCCCHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQL 184 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~ 184 (202)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.1e-23 Score=161.80 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=104.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cchhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLRPL 84 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~ 84 (202)
...++|+++|.+|+|||||+|+|.+.... ...+|...+...+.+ .+...+.+|||||.. .+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~----~~~~~i~l~DT~G~~~~l~~~lie~f~~t 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL----PDGGEVLLTDTVGFIRDLPHELVAAFRAT 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe----CCCceEEEEecCcccccCCHHHHHHHHHH
Confidence 35599999999999999999999987642 113344444444433 234579999999962 12222
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
...+.++|++++|+|++++.++.....|... +......+.|+++|+||+|+...... .... ....+++
T Consensus 263 -le~~~~ADlil~VvD~s~~~~~~~~~~~~~~-L~~l~~~~~piIlV~NK~Dl~~~~~v---~~~~-------~~~~~~i 330 (351)
T TIGR03156 263 -LEEVREADLLLHVVDASDPDREEQIEAVEKV-LEELGAEDIPQLLVYNKIDLLDEPRI---ERLE-------EGYPEAV 330 (351)
T ss_pred -HHHHHhCCEEEEEEECCCCchHHHHHHHHHH-HHHhccCCCCEEEEEEeecCCChHhH---HHHH-------hCCCCEE
Confidence 2347889999999999998877765543332 23223347899999999999753221 1111 0123579
Q ss_pred EeeeecCCCHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~ 184 (202)
++||++|.|+++++++|.+.
T Consensus 331 ~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 331 FVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEccCCCCHHHHHHHHHhh
Confidence 99999999999999998764
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=2.5e-23 Score=147.67 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccc---------------ccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPT---------------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+|+++|.+|+|||||++++.+.......+. .+.+........ ......+.+||+||...+...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999988766432211 112222111111 2345689999999999888889
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhh------
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYEL------ 155 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~------ 155 (202)
..+++.+|++++|+|+.++.+... ..++..... .+.|+++|+||+|+..+.... .+...++....
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 999999999999999987554332 223333322 379999999999997643322 23333322110
Q ss_pred --cCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 --NNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 --~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
......+++++||+++.|++++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 023578899999999999999999998875
No 162
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=7.2e-24 Score=148.89 Aligned_cols=152 Identities=25% Similarity=0.275 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeeccccccc-ceEEEEEEcCCCCC----chh---hHHhhhcCC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCK-GINFLIWDVGGQEK----LRP---LWKSYTRCT 92 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~----~~~---~~~~~~~~~ 92 (202)
++|++|||||||++++.+.... .+ ..|......... .. ...+.+||+||... ... .+..+++.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE-----VPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE-----cCCCCeEEEEeccccchhhhcCCCccHHHHHHHhcc
Confidence 5899999999999999987641 11 112222222222 23 56789999999632 111 234557889
Q ss_pred CEEEEEEeCCCc------hhHHHHHHHHHHHHccCC------CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 93 DGIIFVIDSTDV------ERMEEVKIELIKTIKNND------NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 93 d~~ilv~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
|++++|+|++++ .++.....|...+..... ..+.|+++|+||+|+........... ........
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~----~~~~~~~~ 151 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV----RELALEEG 151 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH----HHHhcCCC
Confidence 999999999987 467776666665554321 13799999999999976544333311 11123346
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+++++||+++.|++++++++.+.
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 679999999999999999998764
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=5.9e-23 Score=147.21 Aligned_cols=162 Identities=26% Similarity=0.336 Sum_probs=114.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC-CEEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT-DGIIFVI 99 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-d~~ilv~ 99 (202)
+|+++|++|||||||+++|.+..+..+.++...+........ ......+.+||+||+.++...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~-~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNS-EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeec-CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999887655444433333332211 13457899999999999999999999998 9999999
Q ss_pred eCCCc-hhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc------------------------
Q psy1315 100 DSTDV-ERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGL------------------------ 152 (202)
Q Consensus 100 d~~~~-~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------------------------ 152 (202)
|+.+. .++.....++..++... ...+.|+++++||+|+........+...+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 67777776665554321 2358999999999998764333221111100
Q ss_pred ---------hhhc-CcceEEEEEeeeecCC-CHHHHHHHHHH
Q psy1315 153 ---------YELN-NMHLYYIQATCAITGD-GLHEGINELYQ 183 (202)
Q Consensus 153 ---------~~~~-~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 183 (202)
..+. ....+.++++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0011 1246779999998876 69999999864
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=2.5e-23 Score=148.29 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC----CCC--Cc----cccccceeeEeeccc---------ccccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD----QYL--NT----VPTIGFNCEKVKGQI---------GKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~----~~~--~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~D~~G~~~ 80 (202)
++|+++|++++|||||+++|.+. .+. .. ..|.+.......+.. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 11 233333333333321 023467899999999866
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhc
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELN 156 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~ 156 (202)
+..........+|++++|+|+.+.........+.. ... .+.|+++|+||+|+....... .+...+.. .+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~-~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK-TLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH-HHH
Confidence 54444455667899999999986443333222221 111 157999999999987543222 22222111 010
Q ss_pred --CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 157 --NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 157 --~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+++++++||++|.|++++++++.+++.
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 124678999999999999999999998764
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.4e-23 Score=143.48 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=99.2
Q ss_pred EEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhcCCCE
Q psy1315 23 VMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTRCTDG 94 (202)
Q Consensus 23 ~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~d~ 94 (202)
+++|.+|+|||||++++.+.......+..+.+........ ......+.+|||||...+.. .+..+++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEA-EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEE-EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 4799999999999999998764322333333333322222 33457899999999877543 34566788999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+++|+|..+..+.... ++...... .+.|+++|+||+|+...... ..... .....+++++|++++.|+
T Consensus 80 ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~--~~~~~------~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 80 ILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE--AAEFY------SLGFGEPIPISAEHGRGI 146 (157)
T ss_pred EEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH--HHHHH------hcCCCCeEEEecccCCCH
Confidence 9999999765433322 22222222 16999999999999765332 11111 111126789999999999
Q ss_pred HHHHHHHHHH
Q psy1315 175 HEGINELYQL 184 (202)
Q Consensus 175 ~~l~~~l~~~ 184 (202)
+++++++.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 166
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=1.6e-23 Score=144.61 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=99.4
Q ss_pred EEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhhc--CCCE
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYTR--CTDG 94 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~d~ 94 (202)
++|.+|+|||||++++.+..+. ...+..........+.. ....+.+|||||+..+.. ++..++. ++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL---GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee---CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 5899999999999999987632 22232223222223322 235799999999876543 3555664 8999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|+|+|+++++... .++..+... ++|+++|+||+|+............ +....+.+++++||.++.|+
T Consensus 78 vi~v~d~~~~~~~~---~~~~~~~~~----~~~~iiv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 78 IVNVVDATNLERNL---YLTLQLLEL----GLPVVVALNMIDEAEKRGIKIDLDK-----LSELLGVPVVPTSARKGEGI 145 (158)
T ss_pred EEEEeeCCcchhHH---HHHHHHHHc----CCCEEEEEehhhhcccccchhhHHH-----HHHhhCCCeEEEEccCCCCH
Confidence 99999998754432 233333332 7899999999999765332221111 11223568999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 175 HEGINELYQLI 185 (202)
Q Consensus 175 ~~l~~~l~~~~ 185 (202)
+++++++.+..
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 167
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.8e-23 Score=157.51 Aligned_cols=159 Identities=23% Similarity=0.260 Sum_probs=107.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~ 87 (202)
-...|+++|.|+||||||++++.+.... .+ ..|...+...+.+ .+...+.+||+||..+ +...+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~----~~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV----DDGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe----CCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 3467999999999999999999986531 11 1122222222222 2336899999999642 2233444
Q ss_pred hhcCCCEEEEEEeCCCc---hhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 88 YTRCTDGIIFVIDSTDV---ERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+++++++|+|+|+++. ++++....|..++.... ...++|+++|+||+|+............+ ....+.++
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l-----~~~~~~~v 306 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKEL-----KKALGKPV 306 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHH-----HHHcCCcE
Confidence 56679999999999876 56777766666554432 13478999999999997653332222222 12234679
Q ss_pred EEeeeecCCCHHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++||++++|++++++++.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 168
>KOG0074|consensus
Probab=99.91 E-value=5e-23 Score=133.09 Aligned_cols=172 Identities=37% Similarity=0.587 Sum_probs=147.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
.++.....+..+.++|+++|-.++|||||+.+|.........||.|++...+.+ .....+++||.+|+...+..|.
T Consensus 5 til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~----~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 5 TILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY----DGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee----cCcEEEEEEecCCccccchhhh
Confidence 345556667789999999999999999999999988877889999999999887 5678999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.|+.+.|.+|+|+|.++...|+.+...+-++.........|+.+.+||.|+.-....+++...+.+..+ +...+.+-+|
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~l-rdRswhIq~c 159 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGL-RDRSWHIQEC 159 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhh-hhceEEeeeC
Confidence 999999999999999999999998888888888767778999999999999877777666666555444 3446778899
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
|+.+++|+..-.+|+..
T Consensus 160 sals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQS 176 (185)
T ss_pred ccccccCccCcchhhhc
Confidence 99999999888777654
No 169
>KOG1673|consensus
Probab=99.91 E-value=4.6e-24 Score=140.02 Aligned_cols=177 Identities=17% Similarity=0.199 Sum_probs=144.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...-.+||.++|++..|||||+-.++++.+. +...+.|+++...++.+ .+..+.+.+||.+|++++..+.+.....+-
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 3456899999999999999999999999885 56788899888888877 678899999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH-HhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK-LLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++++||++.++.+..+..|+.+.... +..-+| |+||+|.|+.-..+++..+. ..+...+++.-+.++|+||+..+.
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 999999999999999999999998776 333444 56799999854444332221 112245556678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh
Q psy1315 173 GLHEGINELYQLILKKRKLQKT 194 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~~~~ 194 (202)
|++.+|..+...+..-...++.
T Consensus 173 Nv~KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred cHHHHHHHHHHHHhCCceeccc
Confidence 9999999998888766555443
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=1.8e-22 Score=140.19 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=103.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh--------hHHhhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--------LWKSYTR 90 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~ 90 (202)
..+|+++|++|+|||||++++.+.......+....+........ ......+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY-TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE-EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433333333322222212 34457899999999654332 3345578
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC-CcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN-AIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
.+|++++|+|++++ +.....++....... +.|+++|+||+|+.. ..........+.. .....+++++|++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~ 152 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKE----LGPFAEIFPISAL 152 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHh----ccCCCceEEEEec
Confidence 89999999999876 222222333322221 689999999999974 3222333322211 2224678999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQL 184 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~ 184 (202)
++.|++++++.|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999998764
No 171
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=3.5e-23 Score=136.46 Aligned_cols=113 Identities=27% Similarity=0.384 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
||+|+|++|||||||+++|.+..+. ...++.+.++....... ......+.+||++|++.+...+...+..+|++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999988776 22223333333222211 3444559999999999888887888999999999
Q ss_pred EEeCCCchhHHHHHHH---HHHHHccCCCCCCcEEEEeeCCC
Q psy1315 98 VIDSTDVERMEEVKIE---LIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~pvivv~nK~D 136 (202)
|||+++++++..+.++ +..+... ..+.|++||+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 9999999999987654 3444332 34699999999998
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=9.3e-23 Score=144.81 Aligned_cols=163 Identities=22% Similarity=0.212 Sum_probs=109.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--C---------------ccccccceeeEeecccc-cccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--N---------------TVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~ 78 (202)
++.++|+++|+.++|||||+.+|++.... . .....+.+......... ......+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 45789999999999999999999854321 0 00111222222111110 367789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCchhh
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLYEL 155 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~~~ 155 (202)
..+.......+..+|++|+|+|+.+.-.. .....+..+... +.|++||+||+|+....... ++...+- ...
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~----~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~-~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL----GIPIIVVLNKMDLIEKELEEIIEEIKEKLL-KEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT----T-SEEEEEETCTSSHHHHHHHHHHHHHHHH-HHT
T ss_pred cceeecccceecccccceeeeeccccccc-cccccccccccc----ccceEEeeeeccchhhhHHHHHHHHHHHhc-ccc
Confidence 99998888999999999999999865322 223333333333 78999999999998332211 1221110 111
Q ss_pred cCc--ceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNM--HLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
... ..++++++||.+|.|++++++.|.+.+
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 112 368999999999999999999998765
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.5e-22 Score=159.92 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSY 88 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 88 (202)
.+....|+++|.|+||||||+++|.+.+.. ..+.+++|.......+ ......|.+||+||... +......+
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv-~~~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVV-QAGDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEE-EECCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 345578999999999999999999986532 2222233333332222 33456899999999432 11223345
Q ss_pred hcCCCEEEEEEeCCCc----hhHHHHHHHHHHHHccC----------CCCCCcEEEEeeCCCCCCCcCHHH-HHHHhCch
Q psy1315 89 TRCTDGIIFVIDSTDV----ERMEEVKIELIKTIKNN----------DNFNVPILILANKQDLPNAIQIKQ-IEKLLGLY 153 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~ 153 (202)
+.++|++|+|+|+++. +.+.....+..++..+. ....+|+|||+||+|+.+.....+ +...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l--- 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL--- 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH---
Confidence 6789999999999753 34444443333333221 123789999999999975433221 12111
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
...+++++++||++++|+++++++|.+.+...+...
T Consensus 311 ---~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~ 346 (500)
T PRK12296 311 ---EARGWPVFEVSAASREGLRELSFALAELVEEARAAE 346 (500)
T ss_pred ---HHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccc
Confidence 122568999999999999999999999988766543
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=2.8e-22 Score=151.68 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=108.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~ 89 (202)
+.-.|+++|.+|||||||+|++++.......+...++........ ......+.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 345699999999999999999999887655555554444433222 2244789999999964422 2334467
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++. +.....++...... .+.|+++|+||+|+... .........+.. .....+++++||
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~----~~~~~~i~~iSA 153 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE----LMDFAEIVPISA 153 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh----hCCCCeEEEecC
Confidence 889999999999862 22223333333332 26899999999999742 222222221110 123467999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+++.|++++++++.+.+..
T Consensus 154 ~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999988753
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=1.6e-22 Score=142.62 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=99.4
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KL 81 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~ 81 (202)
.....+.++|+++|++|+|||||++++.+..+ ..+.++.+.+.....+.. + ..+.+||+||.. .+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-N---DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe-C---CcEEEEeCCCCccccCChhHHHHH
Confidence 33457889999999999999999999998864 455666666655444432 2 268999999942 23
Q ss_pred hhhHHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 82 RPLWKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 82 ~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
......+++. ++++++|+|++++-+..... .+ ..... .+.|+++|+||+|+............++...-...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~-~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-ML-EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HH-HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 3333455543 58999999998654433332 22 22222 27899999999999754322222222211111112
Q ss_pred ceEEEEEeeeecCCCHH
Q psy1315 159 HLYYIQATCAITGDGLH 175 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~ 175 (202)
.+.+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 34589999999999974
No 176
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=1e-22 Score=140.51 Aligned_cols=143 Identities=20% Similarity=0.127 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----chhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----LRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~~~~~d~~i 96 (202)
+|+++|.+|+|||||++++.+.. ....++. ...+ ... .+||+||... +.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~-----~v~~---~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQ-----AVEF---NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccce-----EEEE---CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987653 2111221 1122 111 2699999632 2222234478899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+|+++..++. ..|+... ..+.|+++++||+|+.+. ........+.. .....|++++||++++|+++
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~----~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLE----TGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred EEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHH----cCCCCCEEEEECCCccCHHH
Confidence 999999876652 2333332 126799999999998653 33333333221 11235899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|+++.+.+.+.
T Consensus 138 l~~~l~~~~~~~ 149 (158)
T PRK15467 138 LVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHhchhh
Confidence 999998887554
No 177
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=147.92 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=119.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 89 (202)
+.--|+++|.|++|||||+|++++.+...+++-..+|...+..-+ ..+...+.++||||..+ +.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 455789999999999999999999999888877777777776655 45578899999999432 233444556
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++. +.....++...++. .+.|+++++||+|...+.. ...+.+.+.. ......++++||
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~----~~~f~~ivpiSA 154 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK----LLPFKEIVPISA 154 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh----hCCcceEEEeec
Confidence 789999999999853 33334444444443 2689999999999887655 2333333221 233448999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|++.+.+.+...+.+.
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cccCCHHHHHHHHHHhCCCC
Confidence 99999999999998877554
No 178
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=7.7e-22 Score=154.05 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC----chhh---HHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----LRPL---WKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~---~~~~~~~~ 92 (202)
..|+++|.|+||||||++++++.+.. ..+.+.+|.......+...+...+.+||+||..+ ...+ +...++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 38999999999999999999987632 1222222332222212112256799999999532 2223 33445669
Q ss_pred CEEEEEEeCCCc---hhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 93 DGIIFVIDSTDV---ERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 93 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+++|+|+|+++. ++++....|...+..+.. ..++|++||+||+|+... ...+.... ...+.+++++||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~------~~l~~~i~~iSA 309 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFK------EKLGPKVFPISA 309 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHH------HHhCCcEEEEeC
Confidence 999999999754 566666666555554321 247899999999998432 12222221 111257899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+.+
T Consensus 310 ~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999886654
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=3.2e-22 Score=143.00 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=107.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~ 83 (202)
.....++|+++|++|+|||||++++.+..+ ..+.++.+.+.....+.. ...+.+|||||.. .+..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 345779999999999999999999998764 456667676654433321 3679999999942 2334
Q ss_pred hHHhhhcCC---CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 84 LWKSYTRCT---DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 84 ~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
....++..+ +++++|+|.+++..... .++...... .+.|+++++||+|+.+..........+.. .+ ....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l-~~~~ 168 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-AL-KFGD 168 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HH-HhcC
Confidence 445555544 67888899876543322 122222222 26899999999999764333222221111 11 1125
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++||+++.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 68899999999999999999987664
No 180
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=7e-22 Score=155.10 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=102.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCCc--hhhH------Hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL--RPLW------KS 87 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~------~~ 87 (202)
.++|+++|.+|+|||||+|+|.+..... ...|...+...+.+ .....+.+|||+|..+. ...+ ..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l----~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV----ADVGETVLADTVGFIRHLPHDLVAAFKATLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe----CCCCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999876431 12233333333333 12236789999997331 2222 23
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE-EEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY-IQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (202)
.++.+|++|+|+|++++.++.....+... +......+.|+++|+||+|+...... ..... ..+.+ ++++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~i-L~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~--------~~~~~~~v~I 342 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTV-LEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD--------EENKPIRVWL 342 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHH-HHHhccCCCCEEEEEEcccCCCchhH-HHHHH--------hcCCCceEEE
Confidence 46889999999999998777765432222 22212337899999999998653211 11110 01222 5789
Q ss_pred eeecCCCHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
||++|.|+++++++|.+.+..
T Consensus 343 SAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999998753
No 181
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=3.7e-22 Score=162.53 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-------C-Ccc------ccccceeeEeecc--cc--cccceEEEEEEcCCCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-------L-NTV------PTIGFNCEKVKGQ--IG--KCKGINFLIWDVGGQEK 80 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-------~-~~~------~~~~~~~~~~~~~--~~--~~~~~~~~~~D~~G~~~ 80 (202)
.-+|+++|+.++|||||+++|+.... . .+. ...|.+....... .. ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34899999999999999999986421 1 111 2235555432221 11 24458999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++.+|++|+|+|+++..+......|+... .. +.|+++|+||+|+...... .....+.. .+ ....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~----~ipiIiViNKiDl~~~~~~-~~~~el~~-~l-g~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-EN----DLEIIPVINKIDLPSADPE-RVKKEIEE-VI-GLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-Hc----CCCEEEEEECcCCCccCHH-HHHHHHHH-Hh-CCCc
Confidence 9999999999999999999999876666655554433 22 6899999999998654322 11111110 01 1122
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..++++||++|.|++++|++|.+.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 35899999999999999999988764
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=7.8e-22 Score=160.01 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+..+|+++|++++|||||+++|.+..+... .+.+..+.....+.. .+...+.+|||||++.|..++...+..+|++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~--~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN--EDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE--CCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 4678999999999999999999998776432 221111111122211 1222789999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hcC--cceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LNN--MHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++...-+. ...+.... ..+.|+++++||+|+.+.. ...+...+.... ... ....+++++||++|+
T Consensus 163 ILVVda~dgv~~qT-~e~i~~~~----~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 163 VLVVAADDGVMPQT-IEAISHAK----AANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEEECCCCCCHhH-HHHHHHHH----HcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999986322111 22222222 2378999999999996532 223333221111 111 123579999999999
Q ss_pred CHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQL 184 (202)
Q Consensus 173 ~v~~l~~~l~~~ 184 (202)
|++++++++..+
T Consensus 237 GI~eLl~~I~~~ 248 (587)
T TIGR00487 237 GIDELLDMILLQ 248 (587)
T ss_pred ChHHHHHhhhhh
Confidence 999999998753
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=7.5e-22 Score=163.70 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=108.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
..+...|+++|+.++|||||+++|.+..+... ...+.+...-.+.+ ......++||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v-~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQV-ETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEE-EECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45788999999999999999999987665421 11122222211111 22346799999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcC--cceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNN--MHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++...-.. ...+.... ..+.|+||++||+|+.+.. ...+...+.. ..+.. ...++++++||++|.
T Consensus 365 ILVVdAddGv~~qT-~e~i~~a~----~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 365 VLVVAADDGVMPQT-IEAINHAK----AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEEECCCCCCHhH-HHHHHHHH----hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999986422111 12222222 2378999999999996542 2222221111 11111 124789999999999
Q ss_pred CHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQL 184 (202)
Q Consensus 173 ~v~~l~~~l~~~ 184 (202)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998764
No 184
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=7.2e-22 Score=141.74 Aligned_cols=163 Identities=17% Similarity=0.019 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC---C-Cc--cccccceeeEeecc-----------------------c-----ccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY---L-NT--VPTIGFNCEKVKGQ-----------------------I-----GKC 65 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~---~-~~--~~~~~~~~~~~~~~-----------------------~-----~~~ 65 (202)
++|+++|+.|+|||||+..+.+... + +. ..+....+....+. . ...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 1 11 11111111111110 0 000
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHH
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ 145 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~ 145 (202)
....+.+|||||++.+...+...+..+|++++|+|++++.........+...... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267899999999988888888888999999999998632111111122222111 1357999999999975432222
Q ss_pred HHHHhCchhhc--CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELN--NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+.. .+. ....++++++||++|+|++++++++.+.+.
T Consensus 158 ~~~~i~~-~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKK-FVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHH-HHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1111110 010 123568999999999999999999987553
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.1e-21 Score=135.18 Aligned_cols=155 Identities=23% Similarity=0.189 Sum_probs=106.6
Q ss_pred EEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-------hhHHhhhcCCCEEE
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------PLWKSYTRCTDGII 96 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~d~~i 96 (202)
++|++|+|||||++++.+.......+..+.+...............+.+||+||..... .....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876553333333333333332211226689999999966543 24445778899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|+|.++..+..... +...... .+.|+++|+||+|+.............. .........+++++||.++.|+.+
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRL-LILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHH-hhcccccCCceEEEeeeccCCHHH
Confidence 999999877666554 3333322 3789999999999987654443321011 112244678899999999999999
Q ss_pred HHHHHHHH
Q psy1315 177 GINELYQL 184 (202)
Q Consensus 177 l~~~l~~~ 184 (202)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998875
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=8.3e-22 Score=156.80 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYTRC 91 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 91 (202)
++|+++|.+|||||||+++|.+.....+....+.+........ ......+.+|||||... +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEA-EWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEE-EECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999998876444444455444333322 23447899999999876 33345667889
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEeeeec
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATCAIT 170 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (202)
+|++|+|+|+.++.+... .++...+.. .+.|+++|+||+|+.+.. .....+.. .++ .++++||++
T Consensus 81 ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~-------lg~~~~~~iSa~~ 146 (435)
T PRK00093 81 ADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS-------LGLGEPYPISAEH 146 (435)
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh-------cCCCCCEEEEeeC
Confidence 999999999986533322 122222222 178999999999975421 12222211 122 368999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLI 185 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~ 185 (202)
|.|++++++.+.+..
T Consensus 147 g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 147 GRGIGDLLDAILEEL 161 (435)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998733
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.1e-21 Score=161.48 Aligned_cols=163 Identities=21% Similarity=0.216 Sum_probs=111.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-c--ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-V--PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
..+...|+++|++++|||||+++|....+... . .|.....+...+.. ......+.+|||||++.|..++..+++.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 34678999999999999999999988766421 1 11112222233322 23468899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch-hhcC--cceEEEEEeeee
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY-ELNN--MHLYYIQATCAI 169 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~ 169 (202)
|++|+|+|+++....... ..+..+. ..+.|+||++||+|+.... ...+...+... .+.. ...++++++||+
T Consensus 320 DiaILVVDA~dGv~~QT~-E~I~~~k----~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 320 DIAILIIAADDGVKPQTI-EAINYIQ----AANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred CEEEEEEECcCCCChhhH-HHHHHHH----hcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 999999999864322221 1222222 2378999999999997642 22222222111 0111 124789999999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLI 185 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~ 185 (202)
+|.|+++++++|....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999988764
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=6.3e-22 Score=157.30 Aligned_cols=153 Identities=21% Similarity=0.313 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC--------CCchhhHHhhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ--------EKLRPLWKSYTRCT 92 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~ 92 (202)
+|+++|.+|||||||+|+|.+.....+.+..|++........ ......+.+|||||. +.+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDA-EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEE-EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999998876555555666655444433 345567999999995 33445567778999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
|++++|+|..+...... ..+...++. .++|+++|+||+|+...... ...+. .....+++++||..|.
T Consensus 80 d~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~------~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 80 DVILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFY------SLGFGEPIPISAEHGR 146 (429)
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHH------hcCCCCeEEEeCCcCC
Confidence 99999999986433322 122222222 27899999999998754321 11111 1122368999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++++++.+.+..
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999887744
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=162.87 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=111.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 89 (202)
...+|+++|.++||||||+|+|++.....+.++.|++.+...... ......+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDA-EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEE-EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 447899999999999999999998876666677788877766544 34567899999999653 334556678
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+|++|+|+|+++. +......+...+.. .+.|+++|+||+|+..... ....+.. ...+ ..+++||+
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~-----lg~~-~~~~iSA~ 419 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWK-----LGLG-EPYPISAM 419 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHH-----cCCC-CeEEEECC
Confidence 899999999999753 22222223332222 3799999999999864321 1122211 1112 24689999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|+++++++|.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998754
No 190
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.5e-21 Score=150.40 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
..|+++|.||||||||+|+|++.+. ..++.+.+|.......+...+...+.++|+||..+ .......+++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998753 33333444444433333122334689999999543 222333467889
Q ss_pred CEEEEEEeCC---CchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 93 DGIIFVIDST---DVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 93 d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
|++++|+|++ +.+.++....++..+.... ...+.|+++|+||+|+............+. .. .....+++++||
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-~~--~~~~~~Vi~ISA 315 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-EA--LGWEGPVYLISA 315 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-HH--hCCCCCEEEEEC
Confidence 9999999987 4456666665665555431 123689999999999975433222211111 00 111236899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+++.|++++++.|.+.+.+..
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCc
Confidence 999999999999999887653
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=2.5e-21 Score=157.65 Aligned_cols=158 Identities=22% Similarity=0.155 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC---CC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ---YL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+.|+++|++++|||||+++|.+.. ++ +..++.........+ ......+.+||+||++.|...+..++.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~---~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYF---PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEE---EeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 468999999999999999999743 22 122222222222222 22347899999999999998888999999999
Q ss_pred EEEEeCCCc---hhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHHHHHHHhCc--hhhcCcceEEEEEeeee
Q psy1315 96 IFVIDSTDV---ERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIKQIEKLLGL--YELNNMHLYYIQATCAI 169 (202)
Q Consensus 96 ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~ 169 (202)
++|+|+++. .+.+.+ ..+ .. .+.| ++||+||+|+.+..........+.. .......+.+++++||+
T Consensus 78 ILVVDa~~G~~~qT~ehl----~il-~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHL----AVL-DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEECCCCCcHHHHHHH----HHH-HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 999999873 333322 222 21 1567 9999999999765432222221111 01111125789999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|++++++.+...+...
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999988776543
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=6.1e-22 Score=151.87 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=114.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~ 90 (202)
..|+++|.|+||||||+|+|.+.+..-+...+|+|.+...... ......|.++||+|.+. ...+....+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~-~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA-EWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcccee-EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999988999999999888766 55667799999999542 2345666788
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.||++|||+|... ........+...++. .++|+++|+||+|-... .....++. ...-...+++||..
T Consensus 83 eADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efy------slG~g~~~~ISA~H 149 (444)
T COG1160 83 EADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFY------SLGFGEPVPISAEH 149 (444)
T ss_pred hCCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHH------hcCCCCceEeehhh
Confidence 8999999999974 233333333333332 16999999999996522 11222222 22334578999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLI 185 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~ 185 (202)
|.|+.+|+++++..+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999987
No 193
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1e-20 Score=145.61 Aligned_cols=157 Identities=24% Similarity=0.274 Sum_probs=122.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
....++++++|.||+|||||+|.|.+.....+++..|+|.+.+...+ +-+.+.+.++||+|..+.... ...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i-~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDI-NLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEE-EECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999888 788999999999995433222 334
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.++.+|.+++|+|.+.+.+-.... +... ...++|+++|.||.|+......... . ...+.+++.+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~--------~~~~~~~i~iS 357 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIEL----LPKKKPIIVVLNKADLVSKIELESE-K--------LANGDAIISIS 357 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHHh----cccCCCEEEEEechhcccccccchh-h--------ccCCCceEEEE
Confidence 568899999999998752222211 1111 3347999999999999876553333 1 12344789999
Q ss_pred eecCCCHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~ 188 (202)
+++++|++.+.+.|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998877654
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=8.8e-21 Score=158.00 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=110.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh----------HHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL----------WKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~ 87 (202)
+.++|+++|+||||||||+|++.+... .+.+..|.|........ ......+.+||+||..++... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999998754 34556777777665544 456778999999997655321 222
Q ss_pred hh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++ ..+|++++|+|.++.+.... ++.++... +.|+++|+||+|+.+........+. +.+..++++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l~---l~~ql~e~----giPvIvVlNK~Dl~~~~~i~id~~~-----L~~~LG~pVvp 147 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQNIRIDIDA-----LSARLGCPVIP 147 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhHH---HHHHHHHc----CCCEEEEEEchhhhhccCcHHHHHH-----HHHHhCCCEEE
Confidence 32 47999999999987554332 33333332 7999999999998754332221121 12334678999
Q ss_pred eeeecCCCHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+||.+++|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999987764
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=4e-21 Score=152.14 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=104.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.++.++|+++|++++|||||+++|++..... .....|+|.+.....+ ..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~-~~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF-ET 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE-ec
Confidence 4678999999999999999999998543211 0112455555555444 45
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--- 142 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--- 142 (202)
+.+.+.+|||||++.+.......+..+|++|+|+|+++..++.....+...+.... ...|+++|+||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence 67899999999998887766666788999999999986323322222222222221 1346999999999975221
Q ss_pred ---HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 ---IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
..++...+....+ .....+++++||++|+|++++.
T Consensus 160 ~~~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCC-CcCcceEEEeecccCCCccccc
Confidence 1122222221111 1124789999999999998754
No 196
>KOG3883|consensus
Probab=99.86 E-value=3.3e-20 Score=121.67 Aligned_cols=177 Identities=20% Similarity=0.221 Sum_probs=130.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCCCc-hhhHHhhh
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-RPLWKSYT 89 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~~~~ 89 (202)
.+..+.-|++++|..++|||+++.++...... +..||++-.+. ..+..+.+..-.+.+.||.|-... ..+-.+|+
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~-~svet~rgarE~l~lyDTaGlq~~~~eLprhy~ 82 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYV-ASVETDRGAREQLRLYDTAGLQGGQQELPRHYF 82 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhee-EeeecCCChhheEEEeecccccCchhhhhHhHh
Confidence 34567889999999999999999999876553 44566543222 222222344557899999996655 56777889
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+-+|++++|||..+++||+.+...-..+-+......+|++|++||+|+.++.......+ ..|+....+.++++++.
T Consensus 83 q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A----~~Wa~rEkvkl~eVta~ 158 (198)
T KOG3883|consen 83 QFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVA----QIWAKREKVKLWEVTAM 158 (198)
T ss_pred ccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHH----HHHHhhhheeEEEEEec
Confidence 99999999999999999988765555555554566899999999999975543322222 24556677899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKLQKTN 195 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~~~~~ 195 (202)
+...+-+-|..+...+..-..+...+
T Consensus 159 dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred cchhhhhHHHHHHHhccCCcccccCc
Confidence 99999999999988776554444333
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3e-20 Score=151.57 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeE----eecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEK----VKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~ 78 (202)
++.-+|+++|+.++|||||+.+|+..... +.....|.+... ..+...++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34569999999999999999999863210 011223444332 222111345789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
.++...+..+++.+|++|+|+|+++.........|... .. .+.|+++|+||+|+.............. .+ ..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~--~l-g~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIED--VI-GI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHH--Hh-CC
Confidence 99999999999999999999999876555544433332 22 2689999999999865432211111111 01 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22358999999999999999999987653
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=6.4e-21 Score=137.34 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcc------------------------------ccccceeeEeecccccccceEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTV------------------------------PTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+|+++|++|+|||||+++|++....... ...|++........ ......+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence 5899999999999999999764322110 01234444333322 3456688
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHH
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEK 148 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~ 148 (202)
.+|||||++++.......++.+|++|+|+|++++..-.. ...+ .+.... ...++|+|+||+|+.+... ...+..
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999998877767777899999999999986432111 1111 222221 1245788999999875321 111111
Q ss_pred HhCc--hhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 149 LLGL--YELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 149 ~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
.+.. ..+ .....+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~-~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKL-GIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHc-CCCCceEEEEeCCCCCCCccC
Confidence 1110 011 112357999999999998753
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=8.7e-21 Score=154.61 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh------HHhhh--cCCCEEEE
Q psy1315 26 GLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL------WKSYT--RCTDGIIF 97 (202)
Q Consensus 26 G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~d~~il 97 (202)
|++|||||||+|++.+... ...+..+.|........ ..+...+++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i-~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKL-GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEE-EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 33344455554433322 234457899999998766443 34443 36899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
|+|.++.+.. ..+..++.. .+.|+++|+||+|+.+........+ .+.+..+.+++++||++|+|++++
T Consensus 79 VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~-----~L~~~lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEE-----KLEERLGVPVVPTSATEGRGIERL 146 (591)
T ss_pred EecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHH-----HHHHHcCCCEEEEECCCCCCHHHH
Confidence 9999864332 223333332 2789999999999865433221111 122344678999999999999999
Q ss_pred HHHHHHHH
Q psy1315 178 INELYQLI 185 (202)
Q Consensus 178 ~~~l~~~~ 185 (202)
++++.+..
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998764
No 200
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=6.6e-20 Score=134.12 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC--------------Cc---cccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL--------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||++++++.... +. ....+.+........ ......+.+|||||+..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccchHH
Confidence 5899999999999999999864211 00 111223333222222 45678899999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHH------------
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEK------------ 148 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~------------ 148 (202)
.+..+++.+|++++|+|+.+.... ....++...... +.|+++++||+|+..... ..+++.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL----NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 999999999999999999875432 233344444332 789999999999874211 111111
Q ss_pred ------------------------------HhCc-------------hhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 149 ------------------------------LLGL-------------YELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 149 ------------------------------~~~~-------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++.- .......-+|++..||.++.|++.+++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 155 GLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred cEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 1110 011134568899999999999999999998765
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=1.2e-20 Score=149.51 Aligned_cols=160 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CC----------------------------ccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LN----------------------------TVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~ 64 (202)
..++.++|+++|+.++|||||+.+|+.... .. .....|.+.+.....+ .
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~-~ 81 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF-E 81 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE-c
Confidence 356789999999999999999999985321 10 0112244444443333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ- 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~- 142 (202)
...+.+.+||+||+++|.......+..+|++|+|+|+++.+++.... .+...+... ....|++||+||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHH
Confidence 56788999999999888777777788999999999999875332111 111122222 12357999999999974221
Q ss_pred -H----HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 -I----KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 -~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
. .++...+....+ ....++++++||++|.|+.+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~-~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGY-NPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCC-CcccceEEEeeccccccccccc
Confidence 1 122222221111 1234789999999999998744
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=6.3e-20 Score=149.19 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=115.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC--CCCC-------------ccccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD--QYLN-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
+.-+|+++|+.++|||||+++|++. .+.. ...+.|.+.......+ ..+.+.+++|||||+..|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhH
Confidence 4568999999999999999999863 2211 1234566665554444 5677899999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCc-hhhcCc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGL-YELNNM 158 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~-~~~~~~ 158 (202)
..+..+++.+|++|+|+|+.+.. ......++...... +.|.++|+||+|+....... ++...+.. ......
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~----gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFAY----GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHHc----CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 99999999999999999998642 22333344443333 78999999999997654332 23332211 111123
Q ss_pred ceEEEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
..+|++++||.+|. |+..+++.|++.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45889999999998 58888888777654
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=7.7e-20 Score=148.27 Aligned_cols=161 Identities=24% Similarity=0.234 Sum_probs=106.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-----ccccccceeeEeecccc-----------cccceEEEEEEcCCCCCch
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-----TVPTIGFNCEKVKGQIG-----------KCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~G~~~~~ 82 (202)
..-|+++|++++|||||+++|.+..+.. ..++.|.+......... ......+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4579999999999999999999876642 23334433322211000 0011248899999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHH
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQ 145 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~ 145 (202)
.++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+.... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999999999999999999986 33443322 1111 278999999999996421 0000
Q ss_pred HHH-----------HhCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 146 IEK-----------LLGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 146 ~~~-----------~~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+.. .+....+ ......+++++||++|+|++++++++..+..+
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 100 0111111 01235799999999999999999998765543
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.84 E-value=3.9e-20 Score=150.52 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC--CCCC-------------ccccccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD--QYLN-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+|+++|+.++|||||+.+|+.. .+.. .....|.+.......+ ....+.+++|||||+.+|...+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-RYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-EECCEEEEEEECCCHHHHHHHH
Confidence 7999999999999999999863 2211 1122345555444333 5567899999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH---HHHHHHhCchhh-cCcceE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI---KQIEKLLGLYEL-NNMHLY 161 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~ 161 (202)
..+++.+|++++|+|+.+. .......++...... ++|+++|+||+|+...... .++...+..... .....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999999863 344445566655543 7899999999998754322 223332211111 123457
Q ss_pred EEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
|++++||++|. |+..+|+.+++.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999999888764
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=1.1e-19 Score=126.51 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCCC----------chhhHHhhh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRPLWKSYT 89 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~ 89 (202)
.|+++|++|+|||||++.+.+..+ ....++.+.+.....+.. . ..+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-N---DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-c---CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 389999999999999999996544 355666666555544432 1 2889999999433 233444444
Q ss_pred c---CCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc-CcceEEE
Q psy1315 90 R---CTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN-NMHLYYI 163 (202)
Q Consensus 90 ~---~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 163 (202)
. +.+++++++|.++..+.. .+..++.. . +.|+++|+||+|+............+.. .+. .....++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~----~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 148 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L----GIPFLVVLTKADKLKKSELAKALKEIKK-ELKLFEIDPPI 148 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c----CCCEEEEEEchhcCChHHHHHHHHHHHH-HHHhccCCCce
Confidence 4 357889999987543222 22222221 1 5899999999998654332222222211 111 2345679
Q ss_pred EEeeeecCCCHHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++||+++.|+.+++++|.+.
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999998765
No 206
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=125.38 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=113.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 84 (202)
.+...-|+++|.++||||||+|+|++++. ..++.|+|.|.....+...+ .+.++|.|| .+.+..+
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 34677999999999999999999999764 68899999999888886522 278999999 3455666
Q ss_pred HHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhcC
Q psy1315 85 WKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELNN 157 (202)
Q Consensus 85 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~ 157 (202)
...|++. -.++++++|...+ ....+..+.+.+... +.|++|++||+|........ .+...+....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~--- 168 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL---GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP--- 168 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc---CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC---
Confidence 7777765 4678888888643 333333333333322 89999999999998764443 2332322211
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....-++..|+.++.|++++.+.|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 111117888999999999999998887654
No 207
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=1.8e-19 Score=131.61 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~d 93 (202)
+|+++|.+|+|||||+++|.+.... .......+.......+ ......+++||+||..+. ......+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVL-EYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEE-EECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 6899999999999999999987532 1111111211111111 234578999999996432 224456789999
Q ss_pred EEEEEEeCCCchh-HHHHHHHHH----------------------------------------HHHccC-----------
Q psy1315 94 GIIFVIDSTDVER-MEEVKIELI----------------------------------------KTIKNN----------- 121 (202)
Q Consensus 94 ~~ilv~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~----------- 121 (202)
++++|+|+++++. ...+...+. .+++.+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 222222111 001000
Q ss_pred -------------CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 122 -------------DNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 122 -------------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
...-.|+++|+||+|+.... +.... +.. .+++++||+++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~------~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLL------ARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHH------hcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01136999999999986532 22221 111 2478999999999999999998765
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.3e-19 Score=128.84 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=97.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+++|+++|+.++|||||+++|++... . ......|.+.......+ ..+...+.++||||+..+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY-ETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe-cCCCeEEEEEECcCHHHHHH
Confidence 58999999999999999999986310 0 01112345544444433 34567889999999988887
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 157 (202)
.....+..+|++++|+|+...-. ......+..+... +.| +|+|+||+|+..... .. ++...+....+ .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~-~ 154 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF-D 154 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc-c
Confidence 77888889999999999975321 2222233333332 566 789999999964322 11 12222221111 2
Q ss_pred cceEEEEEeeeecCCCHH
Q psy1315 158 MHLYYIQATCAITGDGLH 175 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~ 175 (202)
..+.+++++||.+|.|+.
T Consensus 155 ~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 155 GDNTPIVRGSALKALEGD 172 (195)
T ss_pred ccCCeEEEeeCccccCCC
Confidence 246899999999999853
No 209
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4e-19 Score=120.56 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------c----ccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------V----PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
.....||+|.|+.++||||+++++.......+ . .|.+..+-.+.+ .....+.++|||||+++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~----~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL----DEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE----cCcceEEEecCCCcHHHH
Confidence 44678999999999999999999988763211 0 122222222322 344678999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
.+|..+.+.+.++|+++|.+.+..+ .....+ ....... ..|++|.+||.|+.+...++.+++.+.... .+.+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----~~~~ 154 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----LSVP 154 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----CCCc
Confidence 9999999999999999999988887 333222 3333211 299999999999999999999998775421 4789
Q ss_pred EEEeeeecCCCHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.++.+|.++++..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999988877654
No 210
>KOG4423|consensus
Probab=99.83 E-value=2.8e-22 Score=135.50 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=141.6
Q ss_pred cchHHHHHHhhcC-CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 3 KNSAAFFENLQAS-GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
.-.+.+.+...+. ....+++.|+|.-|+|||+++.+++...|+ .+..++|..+........+...+++++||..|+++
T Consensus 8 ~~~~~~a~a~ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQer 87 (229)
T KOG4423|consen 8 SGISRIARASAPKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQER 87 (229)
T ss_pred cchhhhhhcCCCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhh
Confidence 3344443333333 357899999999999999999999988886 67788887776666655456678899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC---CCCcEEEEeeCCCCCCCc---CHHHHHHHhCchh
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN---FNVPILILANKQDLPNAI---QIKQIEKLLGLYE 154 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~ 154 (202)
+..+..-|++.+++..+|||+++.-.|+....|...+-..... ...|+|+.+||||..... ....+..+.+
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k--- 164 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK--- 164 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh---
Confidence 9999999999999999999999999999999998887654433 357889999999975432 2223333322
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..-..++++|++.+.|++|+.+.+++.+.....
T Consensus 165 --engf~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 165 --ENGFEGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred --ccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 2233568999999999999999999998876653
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=1.4e-19 Score=142.22 Aligned_cols=167 Identities=20% Similarity=0.065 Sum_probs=104.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeE----eec--------------c--ccc-----cc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEK----VKG--------------Q--IGK-----CK 66 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~----~~~--------------~--~~~-----~~ 66 (202)
.+.++.++|+++|+.++|||||+.+|.+...+ ......|.+... ..+ . ... ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45678899999999999999999999653211 111111222211 010 0 000 01
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH--
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-- 144 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-- 144 (202)
...+.+||+||++.+..........+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHH
Confidence 367999999999887776666667789999999998643111111122222111 134789999999997643322
Q ss_pred --HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 145 --QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++...+... ...+.+++++||+++.|++++++.|.+.+.
T Consensus 161 ~~~i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222222110 123578999999999999999999987654
No 212
>KOG0096|consensus
Probab=99.83 E-value=3.2e-20 Score=125.95 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=135.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++++++|+.|.|||+++++++.+.|. .+.+|.|.......+.- +...+.|..|||.|++.+......|+-.+.++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t-n~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT-NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec-ccCcEEEEeeecccceeecccccccEEeccee
Confidence 45899999999999999999999999987 67899998888877755 44579999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|++||++..-.+.++.+|...+.+.. .++|+++||||.|........ +...+-...++.+++.||+++.|..
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~------k~v~~~rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA------KPVSFHRKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc------ccceeeecccceeEEeecccccccc
Confidence 99999998888999999999988863 379999999999976543111 1112334578899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
.-|.|+.+.+.
T Consensus 159 kPFl~LarKl~ 169 (216)
T KOG0096|consen 159 RPFLWLARKLT 169 (216)
T ss_pred cchHHHhhhhc
Confidence 99999988764
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=1.7e-19 Score=141.82 Aligned_cols=164 Identities=19% Similarity=0.082 Sum_probs=104.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEe------------------eccc-ccc------cceE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKV------------------KGQI-GKC------KGIN 69 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~------------------~~~~-~~~------~~~~ 69 (202)
++.++|+++|++++|||||+++|.+...... ....+.+...- +... .+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999975422111 00011111100 0000 001 2467
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH----H
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK----Q 145 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~ 145 (202)
+.+||+||++.|...+......+|++++|+|+++..........+..+ .. ....|+++|+||+|+.+..... +
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998643112222222222 21 1135789999999997643322 2
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+...+.. . ...+++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~--~-~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKG--T-VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhh--c-ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2222211 0 123578999999999999999999987653
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=2.4e-19 Score=146.58 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+-|+++|+.++|||||+++|.+...+ ......|.|...........+...+.+||+||++.|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999864321 1111123333322111111234468999999999998888888899999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHHHHHHHhCchhh-cCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|+++.- .......+ .+.... +.| ++||+||+|+.+..........+....- ......+++++||++|.|++
T Consensus 81 VVda~eg~-~~qT~ehl-~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGV-MAQTREHL-AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCC-cHHHHHHH-HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 99998631 11212222 222221 455 5799999999764333222222211000 01124689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=6.6e-20 Score=133.04 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccccceEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+|+++|++++|||||+.+|+..... ......|++.+.....+ ......+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~-~~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-ETEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE-eeCCeEE
Confidence 5899999999999999999643110 00112244444444444 4567889
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-C-
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER------MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-Q- 142 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~- 142 (202)
.+|||||+..+...+...++.+|++|+|+|+++... .......+... .. ....|+++|+||+|+.... .
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccH
Confidence 999999988777777777888999999999987421 11122222222 21 1236899999999997421 1
Q ss_pred --HHHHHHHhC--chhhc-CcceEEEEEeeeecCCCHH
Q psy1315 143 --IKQIEKLLG--LYELN-NMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 143 --~~~~~~~~~--~~~~~-~~~~~~~~~~Sa~~~~~v~ 175 (202)
...+...+. +..+. ...+++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122222221 01110 1235889999999999987
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=6e-19 Score=143.56 Aligned_cols=162 Identities=22% Similarity=0.197 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----cccccceeeEeecccc-cccc-----e-----EEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQIG-KCKG-----I-----NFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~-----~-----~~~~~D~~G~~~ 80 (202)
.++..|+++|++++|||||++++.+...... .++.|.+......... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3567899999999999999999987654322 2344433332221000 0000 1 278999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------H
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------I 143 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 143 (202)
|..++...+..+|++|+|+|+++ +.++..+. .+.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99999888899999999999986 44444332 1111 2789999999999852100 0
Q ss_pred HH-----------HHHHhCchhhc---------CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 144 KQ-----------IEKLLGLYELN---------NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 144 ~~-----------~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.. +...+....+. .....+++++||.+|+|++++++.+...+.
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 00 01111111110 124578999999999999999998875443
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=5e-19 Score=128.36 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc-----------------ccc-------ccceeeEe--ec----------cccc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-----------------VPT-------IGFNCEKV--KG----------QIGK 64 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~-----------------~~~-------~~~~~~~~--~~----------~~~~ 64 (202)
+|+++|+.++|||||+.+|....+... ..+ .|++.... .+ ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987554321 011 11111000 00 0001
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhc--CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTR--CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
.....+.++|+||++.+.......+. .+|++++|+|+++... .....++..+... ++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~----~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL----NIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEECccccCHHH
Confidence 23567899999999888766555554 6899999999975432 2222233333332 689999999999865433
Q ss_pred HHH----HHHHhCchh--------------------hcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 143 IKQ----IEKLLGLYE--------------------LNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 143 ~~~----~~~~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
... +...+.... .......|+|.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222 223332111 01123458999999999999999988754
No 218
>KOG1707|consensus
Probab=99.81 E-value=7.4e-20 Score=143.23 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=124.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...+.++|+++|+.|+|||||+-++....+++..|... ....+...+ ..+.+...++|++..+.-.......++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadv-tPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADV-TPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCcc-CcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 45678999999999999999999999999876554432 111222222 4556678999999777766777888999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCcCH--HH-HHHHhCchhhcCcceEEEEEeeee
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAIQI--KQ-IEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.++|+++++++++.+...|+.++++.. ..+.|+|+||||+|....... +. +...+.. ...-..+++|||+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~ 158 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSAL 158 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhh
Confidence 9999999999999999999998888743 148999999999999765332 11 2222111 1122357999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLIL 186 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~ 186 (202)
+-.++.++|....+++.
T Consensus 159 ~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhHhhhhhhhheee
Confidence 99999999988766553
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=3.6e-18 Score=126.98 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc---------cc----------cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT---------VP----------TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~---------~~----------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
-+|+++|++|+|||||+++|++.... .. .. ..+.+.......+ ....+.+++|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCCc
Confidence 47999999999999999999853211 00 00 0122222222222 456789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.++......+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEECCccCCC
Confidence 98888778888999999999999864322 22233333222 27899999999998654
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=6.2e-19 Score=117.03 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----CCCchhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----QEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~d~~i 96 (202)
||.++|+.|||||||+++|.+... .+..|..+. + . =.++|||| +..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~-----~---~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIE-----Y---Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeE-----e---c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999987643 222332221 1 1 13579999 3445555666678899999
Q ss_pred EEEeCCCchh-HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVER-MEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|.|++++.+ |..- +. ...+.|+|-|+||+|+. ++...+.....+..... . .+|++|+.+|+|+
T Consensus 69 ll~dat~~~~~~pP~---fa------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~---~--~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG---FA------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV---K--EIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCCch---hh------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCC---C--CeEEEECCCCcCH
Confidence 9999997643 2211 11 12268999999999998 44455555555543222 2 3599999999999
Q ss_pred HHHHHHHH
Q psy1315 175 HEGINELY 182 (202)
Q Consensus 175 ~~l~~~l~ 182 (202)
++|.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=1.2e-18 Score=126.10 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc------------------cccccceeeE--eeccc--ccccceEEEEEEcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT------------------VPTIGFNCEK--VKGQI--GKCKGINFLIWDVGGQ 78 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~------------------~~~~~~~~~~--~~~~~--~~~~~~~~~~~D~~G~ 78 (202)
+|+++|+.|+|||||+++|+....... ....+.+... ..+.. .++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543211 0111222221 11111 0244688999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.++......++..+|++|+|+|+.+..+... ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~----~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE----GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc----CCCEEEEEECcccC
Confidence 9998888899999999999999987655533 2333333322 58999999999985
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=2e-18 Score=135.33 Aligned_cols=164 Identities=17% Similarity=0.200 Sum_probs=106.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+++++|+++|+.++|||||+++|++... . +.....|.|.......+ ..+...+.++||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~-~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY-ETEKRHYAHVDCPGHA 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe-cCCCcEEEEEECCCHH
Confidence 467899999999999999999999986311 0 11123355555544433 3455678999999998
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHH-----HHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIK-----QIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~-----~~~~~~~~~ 153 (202)
+|.......+..+|++++|+|+++... ......+..+... ++| +|+|+||+|+.+..... ++...+...
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~----g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV----GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 887777777788999999999985321 2222233333222 677 67889999997432211 223332211
Q ss_pred hhcCcceEEEEEeeeecCC--------CHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGD--------GLHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~~~ 185 (202)
.+ .....+++++||.++. ++.++++.+.+.+
T Consensus 162 ~~-~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 162 DF-PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CC-CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 11 1234789999999983 4666666666554
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.80 E-value=2.6e-18 Score=134.75 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=107.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC-------CC-----C---CccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD-------QY-----L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
..+.++.++|+++|++++|||||+++|++. .+ . ......|.|.......+ ..+...+.++||||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~-~~~~~~i~~iDtPG 84 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY-ETANRHYAHVDCPG 84 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE-cCCCcEEEEEECCC
Confidence 345678999999999999999999999862 10 0 11123355555444433 34556789999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcC-HH----HHHHHhC
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQ-IK----QIEKLLG 151 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~----~~~~~~~ 151 (202)
+++|.......+..+|++++|+|+.+.. .......+..+... ++|.+ +++||+|+.+... .. ++...+.
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~----gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHc----CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 9888777777788899999999998632 12222333333222 67855 5799999974322 11 2222222
Q ss_pred chhhcCcceEEEEEeeeecCC----------CHHHHHHHHHHHH
Q psy1315 152 LYELNNMHLYYIQATCAITGD----------GLHEGINELYQLI 185 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 185 (202)
...+ ...+++++++||.++. ++.++++.|...+
T Consensus 160 ~~~~-~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 160 KYDF-PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HcCC-CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1111 1135899999999985 5677777766554
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=3.1e-18 Score=134.83 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=102.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------CccccccceeeEeecccccccceEEEEEEcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
.....+..++|+++|++++|||||+++|++.... ......|.+.......+ ..+...+.++|||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~~~iDtP 83 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY-ETENRHYAHVDCP 83 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE-ccCCeEEEEEECC
Confidence 4455778999999999999999999999864211 11122355555433333 3455678899999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-----HHHHHHh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-----KQIEKLL 150 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-----~~~~~~~ 150 (202)
|+..|.......+..+|++++|+|+.+.-. ......+..+... +.| +|+++||+|+.+.... .++..++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~----g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV----GVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 998887777788889999999999985321 2222233333222 678 7789999999763221 1233333
Q ss_pred CchhhcCcceEEEEEeeeecCCCH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
....+ .....+++++||.+|.|+
T Consensus 159 ~~~~~-~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 159 SKYDF-PGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHhCC-CCCcceEEEcchhhcccc
Confidence 22111 123589999999998753
No 225
>KOG0077|consensus
Probab=99.79 E-value=1.1e-18 Score=116.16 Aligned_cols=173 Identities=32% Similarity=0.455 Sum_probs=135.4
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW 85 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 85 (202)
+..++.+- -+++.=|++++|-.++|||||++.|..++.....||.-.|.....+ ...+|+-.|.+|+......|
T Consensus 8 ~~VLq~Lg-L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I-----g~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 8 SSVLQFLG-LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI-----GGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred HHHHHHHH-HhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee-----cCceEEEEccccHHHHHHHH
Confidence 33333333 4677889999999999999999999988876666666555555544 56789999999999899999
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--------
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN-------- 157 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------- 157 (202)
..|+..+|++++.+|+.+.+.|...+..+..+..-....+.|+++.+||+|.+......+.+..+.+...+.
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~ 161 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLT 161 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999888877776655566899999999999988776666555444333322
Q ss_pred ---cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 ---MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ---~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.....+|.||...+.|.-+.|.|+.+.
T Consensus 162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 234568899999999988888877653
No 226
>KOG1423|consensus
Probab=99.79 E-value=2.3e-18 Score=125.55 Aligned_cols=171 Identities=12% Similarity=0.171 Sum_probs=112.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC------------ch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK------------LR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------------~~ 82 (202)
...+.++|+|+|.|++|||||.|.+++.+....+...-+|...+.... ......+.|+||||.-. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~-ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGII-TSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEE-ecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 456899999999999999999999999998877766666666666655 45667899999999221 11
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-----------------HHH
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-----------------IKQ 145 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-----------------~~~ 145 (202)
..-...++++|++++++|+++......- ..+..+.. -...|-++|.||.|...... .-+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~--ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEE--YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHH--HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1233446779999999999863222211 11111221 12678999999999764210 111
Q ss_pred HHHHhCchh----hcCcc----eEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 146 IEKLLGLYE----LNNMH----LYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 146 ~~~~~~~~~----~~~~~----~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++..+.... +...+ -..+|.+||++|+|++++-++|..+......
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 222211100 01112 2348999999999999999999987754433
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=124.66 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=119.6
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC------Cc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE------KL 81 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~------~~ 81 (202)
.+++++.-.....+|+|.|.||||||||++.+.+.+. ......+|+..+.+.+-..+...++++||||.- +.
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 4567777777899999999999999999999998763 333345667777776646667799999999921 11
Q ss_pred h--hhHHhhhcC-CCEEEEEEeCCCchh--HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc
Q psy1315 82 R--PLWKSYTRC-TDGIIFVIDSTDVER--MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN 156 (202)
Q Consensus 82 ~--~~~~~~~~~-~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 156 (202)
. .+....+++ .++++|+||.+..+. .+.....+..+.... +.|+++|.||+|..+.....++...+.
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~----- 306 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL----- 306 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH-----
Confidence 1 111222222 689999999987654 455555566665543 589999999999987766666665432
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+.....+++..+.+++.+-+.+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 307 EEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred hhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 223344567889999999988888777643
No 228
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-18 Score=139.13 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=111.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc------hhhHHhhh--
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT-- 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~-- 89 (202)
+..+|+++|+||||||||+|++++.... ...=+|+|....+... ......++++|.||...+ +.....++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~-~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKL-KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEE-EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3567999999999999999999987542 2333467777766655 456667999999994322 22333443
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
.++|++|.|+|++|.+....+.-++.++ +.|++++.|++|........--.+ .+.+.-++|++++||+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~-----~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIE-----KLSKLLGVPVVPTVAK 147 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHH-----HHHHHhCCCEEEEEee
Confidence 3479999999999876665555444443 789999999999865432221111 1223458899999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
+|.|++++.+.+.+.....
T Consensus 148 ~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 148 RGEGLEELKRAIIELAESK 166 (653)
T ss_pred cCCCHHHHHHHHHHhcccc
Confidence 9999999999998755433
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=7.8e-18 Score=132.10 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=97.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------C---CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++.++|+++|+.++|||||+++|++... . ......|.|.......+ ......+.+|||||+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~-~~~~~~~~liDtpGh 85 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY-ETENRHYAHVDCPGH 85 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE-cCCCEEEEEEECCch
Confidence 3467899999999999999999999974310 0 11112345555444444 345678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcCH-----HHHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQI-----KQIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~-----~~~~~~~~~ 152 (202)
++|..........+|++++|+|+.+.-. ......+..+... +.|.+ +|+||+|+.+.... .++...+..
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 9887777777788999999999986321 1222233333222 56655 68999999753221 123333322
Q ss_pred hhhcCcceEEEEEeeeecCC
Q psy1315 153 YELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~ 172 (202)
..+ ...+++++++||.++.
T Consensus 161 ~~~-~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDF-PGDDTPIIRGSALKAL 179 (394)
T ss_pred cCC-CccCccEEECcccccc
Confidence 211 1124899999999875
No 230
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=6.6e-18 Score=120.70 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=99.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC-cccccc---ceeeEeecccccccceEEEEEEcCCCCCchhhHHh-----hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIG---FNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS-----YT 89 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-----~~ 89 (202)
+++|+++|.+|+|||||+|++++..... ...+.+ ++.....+.. .....+.+||+||.......... .+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 4789999999999999999999865432 222222 1222112211 12346899999996543222222 25
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---------HHHHHHHhCch---hhc-
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---------IKQIEKLLGLY---ELN- 156 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---------~~~~~~~~~~~---~~~- 156 (202)
..+|+++++.+ .++.....++...+... +.|+++|+||+|+..... .......+... .+.
T Consensus 79 ~~~d~~l~v~~----~~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 79 SEYDFFIIISS----TRFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred cCcCEEEEEeC----CCCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 67899888743 23444444444444432 689999999999843211 11211111111 110
Q ss_pred -CcceEEEEEeeee--cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 157 -NMHLYYIQATCAI--TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 157 -~~~~~~~~~~Sa~--~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
.....++|.+|+. .+.|+..+.+.+.+.+.++++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 1234578999998 6799999999999999876653
No 231
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=1.5e-17 Score=133.89 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=82.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----C----------------ccccccceeeEeecccccccceEEEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----N----------------TVPTIGFNCEKVKGQIGKCKGINFLIW 73 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (202)
...+..+|+++|++++|||||+++|+..... . .....|.+.......+ ..+.+.+++|
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~-~~~~~~inli 84 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF-PYRDCLINLL 84 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-EECCEEEEEE
Confidence 3456789999999999999999999742110 0 0001122222222222 4567889999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+..+......+++.+|++|+|+|+.+.-.. ....++..... .++|+++++||+|+...
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~----~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL----RDTPIFTFINKLDRDGR 146 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh----cCCCEEEEEECCccccc
Confidence 9999999888778888999999999999864221 22333333322 37999999999998653
No 232
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=1.4e-17 Score=120.38 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-----hHHhhhcCCCEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-----LWKSYTRCTDGI 95 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~d~~ 95 (202)
||+++|+.+|||||+.+.++.+..+......+.|...-...+.......+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998876655455554444333333235677999999999865433 467788999999
Q ss_pred EEEEeCCCchh---HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc----hhhc-CcceEEEEEee
Q psy1315 96 IFVIDSTDVER---MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL----YELN-NMHLYYIQATC 167 (202)
Q Consensus 96 ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~S 167 (202)
|+|+|+.+.+- +......+..+... .++..+-|..+|+|+..+....+....... .... ....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984332 33333444444443 558899999999999765444333222111 1110 11248899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
... +.+-+.|..|++.+..+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTH
T ss_pred CcC-cHHHHHHHHHHHHHcccH
Confidence 877 579999999998776443
No 233
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=4.4e-18 Score=117.92 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=78.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh---hhcCCCE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS---YTRCTDG 94 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~d~ 94 (202)
+.-.|+++|++|+|||+|+.+|.++....+..+...+. ...+ .......+.++|+||+++.+..... +..++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 45689999999999999999999987655544442222 2222 1344557899999999998875544 4888999
Q ss_pred EEEEEeCCC-chhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 95 IIFVIDSTD-VERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 95 ~ilv~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
+|||+|.+. +..+.....++-.++... .....|++|++||.|+........++..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 999999873 344555554444433321 2458999999999999876655554443
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.76 E-value=9e-18 Score=134.02 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--------------cc------------------cccceeeEeeccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--------------VP------------------TIGFNCEKVKGQI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--------------~~------------------~~~~~~~~~~~~~ 62 (202)
..+..++|+++|++++|||||+.+|+....... .. ..|.+.+......
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 457889999999999999999999976532111 00 0123333322222
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
..+...+.++||||++.|.......+..+|++++|+|+...-.-. ....+. +..... ..|+||++||+|+.+...
T Consensus 103 -~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 -STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLLG--IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred -ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHhC--CCceEEEEEeeccccchh
Confidence 345668999999999888766666779999999999997532111 111111 111111 357899999999975322
Q ss_pred --HHHHHHHhCc--hhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 143 --IKQIEKLLGL--YELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 143 --~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
...+...+.. ..+......+++++||++|+|++++-
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2222222211 01110235789999999999998753
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=1.3e-17 Score=132.18 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=103.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+++++|+++|+.++|||||+.+|+..... +.....|.+.......+ .
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~-~ 81 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF-E 81 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe-c
Confidence 3567899999999999999999998742210 00111234444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHH-------HHHHHHHHHHccCCCCCC-cEEEEeeCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERME-------EVKIELIKTIKNNDNFNV-PILILANKQD 136 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-pvivv~nK~D 136 (202)
.....+.++|+||+++|.......+..+|++|+|+|+++. .|+ .....+...... ++ ++||++||+|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~----gi~~iIV~vNKmD 156 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL----GVKQMICCCNKMD 156 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc----CCCcEEEEEEccc
Confidence 5677899999999999999999999999999999999862 232 333333332222 56 5788999999
Q ss_pred CCCCcC--------HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 137 LPNAIQ--------IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 137 l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+..... ..++..+++...+ ...+++++++||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~ei~~~l~~~g~-~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATTPKYSKARYDEIVKEVSSYLKKVGY-NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHcCC-CcccceEEEEeccccccccc
Confidence 863211 2233343332222 12357899999999999854
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=7e-17 Score=120.75 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC-----c--ccc----------ccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN-----T--VPT----------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~-----~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||++++++..... . ..+ .+.+........ ....+.+.+|||||+.++..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-EWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-EECCEEEEEEECcCHHHHHH
Confidence 58999999999999999997542210 0 000 011111111111 34567899999999988888
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+..+++.+|++++|+|+++....... ..+..... .+.|.++++||+|+..
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCC
Confidence 888899999999999999875444322 22333322 2789999999999764
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.76 E-value=4.4e-17 Score=129.71 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=100.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---------------CCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---------------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..++.++|+++|++++|||||+++|++... .......|.+.+.....+ ..+...+.++|+||++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~-~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEY-ETENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEE-ecCCcEEEEEECCCHH
Confidence 467899999999999999999999985211 011222345544433333 3456688999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~~ 153 (202)
.|.......+..+|++++|+|+.+... .....++...... ++| +||++||+|+.+... .+ ++...+...
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 988888888889999999999985422 2223333333332 677 788999999975322 11 222332211
Q ss_pred hhcCcceEEEEEeeeecCCC
Q psy1315 154 ELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~ 173 (202)
.+ ...+.+++++|+.++.+
T Consensus 231 g~-~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EF-PGDDIPIISGSALLALE 249 (478)
T ss_pred CC-CcCcceEEEEEcccccc
Confidence 11 12468999999998854
No 238
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=2e-17 Score=131.06 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=102.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+++++|+++|+.++|||||+.+|+..... ......|.+.+.....+ .
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~-~ 81 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-E 81 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE-c
Confidence 3567899999999999999999999762110 00111234444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCc-EEEEeeCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVP-ILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 137 (202)
.+...+.++|+||+.+|.......+..+|++|+|+|+.+.. .+ ......+...... ++| +||++||+|.
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~----gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL----GVKQMIVCINKMDD 157 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc----CCCeEEEEEEcccc
Confidence 56778999999999999888888899999999999998542 11 1233333333222 555 6789999995
Q ss_pred CCC----cCH----HHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 138 PNA----IQI----KQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 138 ~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
... ... .++...+....+ ...+++++++|+.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~-~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGY-NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCC-CcccceEEEeecccCCCccc
Confidence 321 112 223333321111 12368999999999999864
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=4.7e-17 Score=117.63 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCc---------------cccccceee----Eeecccc-----cccceEEEEEEcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNT---------------VPTIGFNCE----KVKGQIG-----KCKGINFLIWDVG 76 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~---------------~~~~~~~~~----~~~~~~~-----~~~~~~~~~~D~~ 76 (202)
+|+++|+.++|||||+.+|+....... ....|.+.. ...+... ++..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975431100 001122211 1222110 2347889999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
|++.|......+++.+|++++|+|+.+...... ...+...... +.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc----CCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 2233333322 68999999999985
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.75 E-value=1.7e-17 Score=130.51 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc--------------c------------------ccccceeeEeecccccccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT--------------V------------------PTIGFNCEKVKGQIGKCKG 67 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~~~~~ 67 (202)
++|+++|+.++|||||+.+|+....... . ...|.+.+...... ..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~-~~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF-STDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-ccCC
Confidence 5899999999999999999975432100 0 01123333322222 3456
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~ 145 (202)
..+.++||||++.|.......+..+|++|+|+|+...-.- .....+. +.... ...+++|++||+|+.+... ...
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence 6899999999998877777788899999999999754221 1111222 22211 1346899999999975321 111
Q ss_pred HHHHhCc--hhhcCcceEEEEEeeeecCCCHHH
Q psy1315 146 IEKLLGL--YELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 146 ~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+...+.. ..+ ...+.+++++||.+|+|+++
T Consensus 156 i~~~~~~~~~~~-~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQL-GFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHc-CCCCccEEEeecccCCCCcc
Confidence 2221110 011 12356899999999999986
No 241
>KOG1191|consensus
Probab=99.74 E-value=1.8e-17 Score=127.83 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=120.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-c--------hhh
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-L--------RPL 84 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~--------~~~ 84 (202)
...+..++|+++|.||+|||||+|.|.+.....++|..|+|.+.+...+ +.+.+.+.+.||+|..+ - -..
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v-~~~G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQV-TVNGVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEe-ecCCeEEEEEeccccccccCChhHHHhHHH
Confidence 3466789999999999999999999999999999999999999999988 68899999999999433 0 012
Q ss_pred HHhhhcCCCEEEEEEeC--CCchhHHHHHHHHHHHHccC-----CCCCCcEEEEeeCCCCCCCcCHHHH--HHHhCchhh
Q psy1315 85 WKSYTRCTDGIIFVIDS--TDVERMEEVKIELIKTIKNN-----DNFNVPILILANKQDLPNAIQIKQI--EKLLGLYEL 155 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~--~~~~s~~~~~~~~~~~~~~~-----~~~~~pvivv~nK~Dl~~~~~~~~~--~~~~~~~~~ 155 (202)
...-++.+|++++|+|+ +..++-..+.+.+.....-. .....|++++.||.|+......-.. ..+.. ..
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~--~~ 419 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS--AE 419 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc--cc
Confidence 33446779999999999 33333333333443332211 1225799999999999765221111 11111 00
Q ss_pred cCcceEE-EEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 156 NNMHLYY-IQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 156 ~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.....+ ..++|+++++|++.+...+...+...
T Consensus 420 -~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 420 -GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred -cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 112333 55699999999999999998877654
No 242
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=120.82 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~ 82 (202)
..+....|+++|-.++|||||+|++.+.... .-..|...+...+.+ .+...+.+.||.|.- .|.
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l----~~g~~vlLtDTVGFI~~LP~~LV~AFk 263 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL----GDGRKVLLTDTVGFIRDLPHPLVEAFK 263 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe----CCCceEEEecCccCcccCChHHHHHHH
Confidence 3567899999999999999999999976542 335666777777776 335678899999932 233
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (202)
+.... ...+|++++|+|++++.....+.. ...++........|+|+|.||+|+..... ...+.. ..+
T Consensus 264 sTLEE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~---------~~~- 331 (411)
T COG2262 264 STLEE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELER---------GSP- 331 (411)
T ss_pred HHHHH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhh---------cCC-
Confidence 33333 456999999999999865555443 33333333445799999999999876543 111111 112
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+++||++++|++.+.+.|.+.+...
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 578999999999999999999988744
No 243
>PRK13351 elongation factor G; Reviewed
Probab=99.74 E-value=4.9e-17 Score=135.83 Aligned_cols=118 Identities=21% Similarity=0.167 Sum_probs=83.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------Cc---cccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
++..+|+++|+.|+|||||+++|+..... +. ....+.+........ ......+++|||||+.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-DWDNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-EECCEEEEEEECCCcH
Confidence 45789999999999999999999853210 00 001122222211112 3457789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
++...+..+++.+|++|+|+|+++........ .+...... ++|+++|+||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~~----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADRY----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhc----CCCEEEEEECCCCCCC
Confidence 99999999999999999999998766555433 33333222 7899999999998764
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=1.2e-16 Score=126.58 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=103.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC---------CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL---------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+++++|+++|+.++|||||+++|.+. ... +.....|.|.......+ ..+...+.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY-ETAKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE-cCCCeEEEEEECCCcc
Confidence 4678999999999999999999999632 100 11122355555544444 4456688999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-HHHH----HHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-KQIE----KLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-~~~~----~~~~~~ 153 (202)
.|.......+..+|++++|+|+.+... ......+..+... +.| +|+++||+|+.+.... +.+. ..+...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~----gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV----GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 887777777778999999999975421 2222223333222 678 5788999999753221 1122 222111
Q ss_pred hhcCcceEEEEEeeee---cCCC-------HHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAI---TGDG-------LHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~---~~~~-------v~~l~~~l~~~~ 185 (202)
.+ ....+|++++|+. ++.| +.++++.+.+.+
T Consensus 211 ~~-~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 KF-PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CC-CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 11 1235788888875 4555 667777766654
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=8.7e-17 Score=126.08 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++.++|+++|+.++|||||+++|++.... +.....|.|........ ..+...+.++||||+
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~-~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY-ETEKRHYAHVDCPGH 85 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE-cCCCeEEEEEECCCH
Confidence 34578999999999999999999999873110 11113345555444433 345567899999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCCCCCcC-HH----HHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDLPNAIQ-IK----QIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~----~~~~~~~~ 152 (202)
.+|.......+..+|++++|+|+.+.-. ......+..+... +.|.+ |++||+|+.+... .. ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 8887777777889999999999975322 2222333333322 67876 5899999975322 11 22222221
Q ss_pred hhhcCcceEEEEEeeeecCC----------CHHHHHHHHHHH
Q psy1315 153 YELNNMHLYYIQATCAITGD----------GLHEGINELYQL 184 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~ 184 (202)
..+ ...+.+++++||.++. ++..+++.|...
T Consensus 161 ~~~-~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 161 YDF-PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cCC-CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 111 1245789999999875 455666665554
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=1.2e-16 Score=104.64 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc---------hhhHHhhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL---------RPLWKSYTRC 91 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~ 91 (202)
+|+|+|.+|+|||||+|+|++.......+..+.+........ ......+.++||||...- .......+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~-~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQF-EYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEE-EETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeee-eeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 689999999999999999998655444444454444422211 235566789999995321 1123334488
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
+|++++|+|.+++.. +.....+..+ + ...|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999999876311 2222222333 2 38999999998
No 247
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=1e-16 Score=119.34 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC-----------------CccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL-----------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
+|+++|++|+|||||+++|+..... +.....+.+.......+ ......+.++||||+..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~-~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTC-FWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEE-EECCEEEEEEECCCcHHHHH
Confidence 5899999999999999999742110 01112234444333333 34567899999999988888
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+..+++.+|++|+|+|+.+...-. ....+...... ++|+++++||+|+.+.
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~----~~p~ivviNK~D~~~a 131 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 8999999999999999997643222 22333333332 7899999999998754
No 248
>KOG1489|consensus
Probab=99.73 E-value=8e-17 Score=118.15 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=104.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEeecccccccceEEEEEEcCCCC-------Cchh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------KLRP 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~~~~ 83 (202)
..-.+.+||-|++|||||++++.+.+. ....|.+| .+.+ .+...+.+-|.||.- .+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~y----ddf~q~tVADiPGiI~GAh~nkGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNY----DDFSQITVADIPGIIEGAHMNKGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeec----cccceeEeccCccccccccccCcccH
Confidence 445688999999999999999998753 11234333 2222 233448899999932 3344
Q ss_pred hHHhhhcCCCEEEEEEeCCCc---hhHHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDV---ERMEEVKIELIKTIKN-NDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 157 (202)
.....+++++.+++|+|++.+ +.++.+...+.++..+ ....+.|.++|+||+|+.+.... +++...+
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~l------- 339 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRL------- 339 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHc-------
Confidence 556677889999999999987 6666666555544332 24558999999999998643221 3333322
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+..++++||++++|+.++++-+.+.
T Consensus 340 -q~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 340 -QNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -CCCcEEEeeeccccchHHHHHHHhhc
Confidence 22358999999999999999877553
No 249
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-16 Score=124.28 Aligned_cols=165 Identities=21% Similarity=0.147 Sum_probs=111.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccc--cceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKC--KGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+.+=|+++|+...|||||+..+........... |.|-..--+.+... ....+.|.||||++.|..+...-.+-+|++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaG-GITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAG-GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCC-ceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 456799999999999999999987665322111 22222222211111 345799999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc--CcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN--NMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~ 173 (202)
|||+++++.- ......-+...... +.|++|..||+|.++........+........ -.....++++||++|+|
T Consensus 83 ILVVa~dDGv-~pQTiEAI~hak~a----~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDGV-MPQTIEAINHAKAA----GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCCc-chhHHHHHHHHHHC----CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999631 12222233333333 89999999999998653332222211111111 12347899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
+++|++.+.-+...+
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776655
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=1.5e-16 Score=128.27 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=82.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CC--------------------ccccccceeeEeecccccccceEEE
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LN--------------------TVPTIGFNCEKVKGQIGKCKGINFL 71 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (202)
.....+..+|+++|++++|||||+++|+.... .. .....|.+.......+ ....+.+.
T Consensus 5 ~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~in 83 (527)
T TIGR00503 5 LKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVN 83 (527)
T ss_pred hhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEE
Confidence 34556788999999999999999999864211 00 0011133333322222 45678999
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+|||||+..+......+++.+|++|+|+|+.+. +......+...... .+.|+++++||+|+..
T Consensus 84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999999988888777788999999999999853 22222222233322 3789999999999853
No 251
>KOG0462|consensus
Probab=99.71 E-value=1.8e-16 Score=123.75 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=117.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeEeeccc--ccccceEEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEKVKGQI--GKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~ 80 (202)
++--++.++.+...|||||..+|+..... +.....|.|....+..+ .++..+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 56678999999999999999999753221 11223355554433322 235568999999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
|.......+..++++|+|+|+...-.-+...+.+..... +..+|.|+||+|++.........+... ....+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~---lF~~~~ 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFE---LFDIPP 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHH---HhcCCc
Confidence 998888888899999999999854433444444444433 688999999999988755443333222 224466
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++.+||++|.|+.++++.|++.+.
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCC
Confidence 68999999999999999999998764
No 252
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=115.54 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=105.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSY 88 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~ 88 (202)
.+..-.++++|.|++|||||++.|.+.... ...-.-+|...+...+ .++...++++|+||.-. ......+.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l-~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGML-EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceE-eecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 345678999999999999999999987531 1111123334444434 78889999999998321 22456677
Q ss_pred hcCCCEEEEEEeCCCchh-HHHHHHHH----------------------------------------HHHHccCC-----
Q psy1315 89 TRCTDGIIFVIDSTDVER-MEEVKIEL----------------------------------------IKTIKNND----- 122 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~----- 122 (202)
+++||++++|+|+....+ .+-+.+.+ ..+++.+.
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 899999999999986433 22211111 01111000
Q ss_pred -------------------CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 123 -------------------NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 123 -------------------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..=+|.++|.||.|+.+......+... ...+++||..+.|++++.+.|.+
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-----------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-----------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-----------cceEEEecccCCCHHHHHHHHHH
Confidence 012699999999999874333333321 16789999999999999999998
Q ss_pred HHH
Q psy1315 184 LIL 186 (202)
Q Consensus 184 ~~~ 186 (202)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 773
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=132.22 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc----------c----------------------ccceeeEeeccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP----------T----------------------IGFNCEKVKGQI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~----------~----------------------~~~~~~~~~~~~ 62 (202)
..++.++|+++|++++|||||+++|++........ . .|.|.+......
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 56678999999999999999999998654321100 0 122222222222
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
......+.++||||++.+.......+..+|++++|+|+.+...-. ....+...... ...|++||+||+|+.+...
T Consensus 100 -~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 -ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred -ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEecccccchh
Confidence 344567899999999887766667788999999999997532111 11111111111 1357889999999975221
Q ss_pred --HHHHHHHhCc--hhhcCcceEEEEEeeeecCCCHHH
Q psy1315 143 --IKQIEKLLGL--YELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 143 --~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
...+...+.. ..+ .....+++++||++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence 1222222210 011 12346799999999999874
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.4e-17 Score=122.14 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=107.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 64 (202)
..+.+++++|+|+..+|||||+-+|++.... ...+..|.|.......+ .
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f-e 81 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF-E 81 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe-e
Confidence 3568999999999999999999999765311 01122356666655555 5
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh-----HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER-----MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++++|+||+..|-..+......+|+.|+|+|+.+.+. .....+....+.+. ..-..+||++||+|+.+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~ 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVS 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccc
Confidence 677889999999998888888888888999999999987531 11122222222222 22457889999999987
Q ss_pred CcC--HHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 140 AIQ--IKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 140 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
-.+ .++ +...++...+ ...+++|+++|+.+|.|+.+.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCC-CccCCeEEecccccCCccccc
Confidence 322 112 2222211111 223688999999999997653
No 255
>KOG0090|consensus
Probab=99.70 E-value=4.9e-16 Score=107.94 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=110.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc---CC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR---CT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~ 92 (202)
.++.-.|.++|..+||||+|+-+|..+.+..+.++...+.-...+ ......++|.||+++.+.....++. .+
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~-----gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRL-----GSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEee-----cCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 334478999999999999999999988766555554444444433 2223789999999999887777777 68
Q ss_pred CEEEEEEeCC-CchhHHHHHHHHHHHHccC--CCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------h--------
Q psy1315 93 DGIIFVIDST-DVERMEEVKIELIKTIKNN--DNFNVPILILANKQDLPNAIQIKQIEKLLGL--------Y-------- 153 (202)
Q Consensus 93 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~-------- 153 (202)
-++|+|+|.. .+.....+..++-.++... .....|+++++||.|+.-....+.+++.++. .
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999974 2333444443333333322 3458899999999999665443333222110 0
Q ss_pred ----------------hh--cCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 154 ----------------EL--NNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 154 ----------------~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+ .....+.|.++|++++ +++++-+|+.+.
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 0124577999999988 899999998764
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=3.2e-16 Score=124.05 Aligned_cols=169 Identities=15% Similarity=0.082 Sum_probs=106.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---CCc---cc--cccceeeEe-------------ecccc----------
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---LNT---VP--TIGFNCEKV-------------KGQIG---------- 63 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~~~---~~--~~~~~~~~~-------------~~~~~---------- 63 (202)
..+..++|+++|+..+|||||+.+|.+... .+. .- ..|+..... .++..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346789999999999999999999987432 111 11 122221100 00000
Q ss_pred ---cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 64 ---KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 64 ---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
......+.++|+||++.|.......+..+|++++|+|+++..........+. +... ..-.|+|||+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~--lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEI--MKLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHH--cCCCcEEEEEecccccCH
Confidence 0002468999999999988888888889999999999986321222222322 2221 113478999999999764
Q ss_pred cCHHHHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+....+.... -......+++++||++|.|+++|++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 33322222221100 00124679999999999999999999886553
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.70 E-value=9.2e-16 Score=128.06 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=83.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Ccc------------ccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NTV------------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+-.+|+++|++++|||||+++|++.... ... ...|++.......+ ......+.+|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~-~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV-FWKGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE-EECCeEEEEEECCCC
Confidence 445679999999999999999999743211 010 11244444333333 446788999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.++......+++.+|++|+|+|+.+....... ..+...... +.|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----EVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----CCCEEEEEECCCCCC
Confidence 98888888999999999999999865444322 233333322 689999999999875
No 258
>KOG1145|consensus
Probab=99.69 E-value=1e-15 Score=119.65 Aligned_cols=164 Identities=21% Similarity=0.164 Sum_probs=116.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc---ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV---PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
.+++.=|.++|+...|||||+..|.+....... -|..+--..+++ + +.-.++|.||||+..|..+...-..-+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~--p--~G~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTL--P--SGKSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEec--C--CCCEEEEecCCcHHHHHHHHhccCccc
Confidence 346778999999999999999999887654221 111122223333 2 346789999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC--cceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN--MHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~ 170 (202)
|++|+|+.++|.- +.....-+.... ..+.|+||.+||+|.++.......++.+......+ ..+.+++++||++
T Consensus 226 DIvVLVVAadDGV-mpQT~EaIkhAk----~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 226 DIVVLVVAADDGV-MPQTLEAIKHAK----SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cEEEEEEEccCCc-cHhHHHHHHHHH----hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999999998632 222222233333 33899999999999987655444444433222222 3568899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKK 188 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~ 188 (202)
|.|++.|.+.+.-+..-.
T Consensus 301 g~nl~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVM 318 (683)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999887665433
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4e-16 Score=112.75 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=111.1
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------ch
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LR 82 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~ 82 (202)
++.+-..+.+++|+++|.+|+|||||+|+|+.....+.... +.+..........++.-.+.+||+||-++ +.
T Consensus 30 ~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r 108 (296)
T COG3596 30 RMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHR 108 (296)
T ss_pred hhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhccccceEEecCCCcccchhhhHHHH
Confidence 33344567899999999999999999999997654433221 11111111111123345689999999443 66
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC---------cCHHHHHHHhCc-
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA---------IQIKQIEKLLGL- 152 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~~~~- 152 (202)
.....++.+.|.++++.+..++.---. .+.+..+... ..+.|+++++|.+|.... .....++.++..
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 778888999999999999986532111 2233344332 225899999999998542 111112222211
Q ss_pred ----hhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 153 ----YELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 153 ----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+ ...--|++..|...++|++++...++..+...
T Consensus 186 ~~~~~~~-~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 186 AEALGRL-FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHH-HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 111 12245688888899999999999999988644
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=1.1e-15 Score=109.29 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccc-cccceeeEeecccccccceEEEEEEcCCCCCch-------h----hHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------P----LWKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~----~~~~ 87 (202)
++|+++|.+|+|||||+|.+++........ ..+.|........ ......+.++||||..... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~-~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESA-VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeE-EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 579999999999999999999876542221 2223322222211 2245679999999943321 1 1122
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--CchhhcCcceEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--GLYELNNMHLYYIQ 164 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (202)
...+.|++|+|+++.+.. .......++...... ....++++|.|++|........+..... .+...-..++..++
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 245689999999997621 112222333333221 1135889999999976543322211100 01111123444444
Q ss_pred Eee-----eecCCCHHHHHHHHHHHHHHHH
Q psy1315 165 ATC-----AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 165 ~~S-----a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
..+ +..+.++.+|++.|.+.+.++.
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 444 4467789999999988887643
No 261
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.2e-15 Score=115.59 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=54.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCC-------CccccccceeeEeecc---------------cccccceEEEEEEcCCC-
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYL-------NTVPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGGQ- 78 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~-------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G~- 78 (202)
|+++|.|+||||||++++++.... ...|+.|........+ ......+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987642 2234444333211100 10124478999999996
Q ss_pred ---CCchhh---HHhhhcCCCEEEEEEeCC
Q psy1315 79 ---EKLRPL---WKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 79 ---~~~~~~---~~~~~~~~d~~ilv~d~~ 102 (202)
++...+ ....++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443 334589999999999997
No 262
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=6.9e-16 Score=115.31 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=72.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----------cccccceeeEeecccccccceEEEEEEcCCCCCchh---
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP--- 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--- 83 (202)
-.++|+++|++|+|||||+|+|++..+... .+|.+.......... ++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchh
Confidence 368999999999999999999998876432 223333333333322 34557899999999332111
Q ss_pred hHH-----------------------hhhc--CCCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 84 LWK-----------------------SYTR--CTDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 84 ~~~-----------------------~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.|. ..+. .+|+++++++.+.. .+... ...+..+. . .+|+++|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-~----~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-K----RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-c----cCCEEEEEECCCc
Confidence 110 1222 36788888887642 22222 22233332 2 6899999999999
Q ss_pred CCC
Q psy1315 138 PNA 140 (202)
Q Consensus 138 ~~~ 140 (202)
...
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 654
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=8.2e-15 Score=117.72 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=73.2
Q ss_pred eEEEEEEcCCCCC-----chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 68 INFLIWDVGGQEK-----LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 68 ~~~~~~D~~G~~~-----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
..+.++||||... +.......+..+|++++|+|..+..+..+ ..+...+.. .....|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk-~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILA-VGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHh-cCCCCCEEEEEEcccCCCccc
Confidence 4578999999543 23345567899999999999986433332 122232332 111359999999999864222
Q ss_pred --HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 143 --IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 143 --~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
...+...+..... .......+|++||++|.|++.+++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444444321110 1223456999999999999999999887
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=112.31 Aligned_cols=157 Identities=23% Similarity=0.285 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC--CCc-----cccccceeeEeecccccccceEEEEEEcCCCC-------CchhhHH
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY--LNT-----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------KLRPLWK 86 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~~~~~~~ 86 (202)
-|.+||-|++|||||++.+...+. .+| .|..|+... ...-.|.+-|.||.- .......
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--------~~~~sfv~ADIPGLIEGAs~G~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--------DGGESFVVADIPGLIEGASEGVGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--------cCCCcEEEecCcccccccccCCCccHHHH
Confidence 478999999999999999998653 122 333333222 223358889999932 2333455
Q ss_pred hhhcCCCEEEEEEeCCCchh---HHHHHHHHHHHHcc-CCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceE
Q psy1315 87 SYTRCTDGIIFVIDSTDVER---MEEVKIELIKTIKN-NDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (202)
..++++.++++|+|++..+. .+.......++..+ ....++|.+||+||+|+... ...+.....+... .....
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~~~ 309 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGWEV 309 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCCCc
Confidence 66788999999999985442 44444444444333 23448999999999996543 3333333333211 11222
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
.++ +||.+++|++++...+.+.+.+.+
T Consensus 310 ~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 222 999999999999999999988776
No 265
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=3.7e-15 Score=124.41 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Cc------------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NT------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..+|+++|++++|||||+++|+..... .. ....|++.......+ ..+...+.++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~-~~~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEE-EECCEEEEEEcCCCH
Confidence 446779999999999999999999753110 00 012234433333222 346778999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+...+...++.+|++|+|+|+.+.-.-.. ...+...... ++|.++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 8888888889999999999999986432222 2233333332 6899999999999753
No 266
>KOG1532|consensus
Probab=99.65 E-value=4e-15 Score=107.36 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=101.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccc--------------------------------------cc-
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTI--------------------------------------GF- 53 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~--------------------------------------~~- 53 (202)
....+++..|+|+|..|||||||+++|...-.....|.. |+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345678899999999999999999999643211111110 10
Q ss_pred ---eeeEe------ecccccccceEEEEEEcCCCCCc------hhhHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 54 ---NCEKV------KGQIGKCKGINFLIWDVGGQEKL------RPLWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 54 ---~~~~~------~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
++... .+.....+.....++||||+-+. .+..-..+ ...-++++++|..+..+-.....-++.
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00000 00001223345788999996431 11111222 224677888886543332222223333
Q ss_pred HHccCCCCCCcEEEEeeCCCCCCCcCHH----H---HHHHhC---------------chhhcCcceEEEEEeeeecCCCH
Q psy1315 117 TIKNNDNFNVPILILANKQDLPNAIQIK----Q---IEKLLG---------------LYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 117 ~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~---~~~~~~---------------~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
.....+....|.||+.||+|+.+..... + .+..+. +..-....++..+-+||.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 3333344489999999999998742222 1 111111 10111246788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKKR 189 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~ 189 (202)
+++|..+.+.+.++.
T Consensus 253 ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776553
No 267
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.3e-15 Score=115.97 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=116.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC--------------CccccccceeeE----eecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL--------------NTVPTIGFNCEK----VKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G 77 (202)
.++--+++++.+-..|||||..+++..... +.....|.|... ..+...+++.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345568899999999999999999653211 111222444333 33333456789999999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCchh
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLYE 154 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~~ 154 (202)
+..|.......+..|.++++|+|++..-.-+.+.+.+..+-+ +.-+|-|.||+||+...... ++++.+.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iG--- 157 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIG--- 157 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhC---
Confidence 999988777778889999999999965444555666666544 67899999999998765433 3344332
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
......+.+||++|.|++++++.|++.+..
T Consensus 158 ---id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 158 ---IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ---CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 233457889999999999999999988753
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=9.5e-15 Score=121.98 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=81.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----Cc------------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NT------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++..+|+++|++++|||||+++|+..... .. ....|++........ ......+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~-~~~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-EECCeEEEEEeCCCc
Confidence 345679999999999999999999742110 00 012344444433333 445678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.......++.+|++|+|+|+...-.... ...+...... +.|.++++||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY----KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc----CCCEEEEEECCCCCC
Confidence 8877777778888999999999875432222 2233333333 789999999999875
No 269
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.63 E-value=3.7e-14 Score=108.96 Aligned_cols=125 Identities=24% Similarity=0.336 Sum_probs=93.9
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+...+.+||++|+...+..|..++.+++++|+|+|+++ ...+......+..+.......+.|++|++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 44568999999999999999999999999999999986 34677777788888876666789999999999
Q ss_pred CCCCC-----------------cCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA-----------------IQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~-----------------~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+... ........++... ... ....+..+.++|.+-.++..+|+.+.+.+.+...
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 97431 1122222222110 000 1245778899999999999999999998887654
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=1.3e-14 Score=121.23 Aligned_cols=110 Identities=22% Similarity=0.196 Sum_probs=75.3
Q ss_pred EcCCCCCHHHHHHHhhcCCCCC-----c------------cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 25 LGLDSAGKTTALYRLKFDQYLN-----T------------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 25 ~G~~~~GKssL~~~l~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
+|++++|||||+++|+...... . ....+.+........ ....+.+.+|||||+..+...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~-~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTC-EWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEE-EECCEEEEEEECCCcHHHHHHHHH
Confidence 6999999999999996532210 0 001123332222222 345688999999999888888888
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
++..+|++++|+|+++....... ..+...... +.|+++|+||+|+...
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~~----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEKY----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 99999999999999875544432 233333222 7899999999998753
No 271
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.62 E-value=2.9e-14 Score=104.82 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--h-
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--P- 83 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~- 83 (202)
++.+++.+.....++|+|+|.+|+|||||+|++++..........+.+.....+.. ......+.+|||||..... .
T Consensus 19 ~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~-~~~g~~i~vIDTPGl~~~~~~~~ 97 (249)
T cd01853 19 ELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG-TVDGFKLNIIDTPGLLESVMDQR 97 (249)
T ss_pred HHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE-EECCeEEEEEECCCcCcchhhHH
Confidence 45566777888999999999999999999999999876544333333333333222 2345689999999955431 0
Q ss_pred h-------HHhhhc--CCCEEEEEEeCCCc-hhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 84 L-------WKSYTR--CTDGIIFVIDSTDV-ERME--EVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 84 ~-------~~~~~~--~~d~~ilv~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
. ...++. ..|++++|..++.. .... .+.+.+...... .-..++++|.||+|...
T Consensus 98 ~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 98 VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCC
Confidence 1 222332 47888888766642 1222 223333333221 11357999999999854
No 272
>KOG1490|consensus
Probab=99.61 E-value=2.6e-15 Score=116.25 Aligned_cols=177 Identities=12% Similarity=0.087 Sum_probs=119.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-----chh
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-----LRP 83 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-----~~~ 83 (202)
++.+++...+.-+++++|-|++|||||++.+..... ......+|+....+...++.-..+++.||||.-. ...
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 566677788999999999999999999998886653 2233345555555554466777889999999321 111
Q ss_pred -hHH--hhh-cCCCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 84 -LWK--SYT-RCTDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 84 -~~~--~~~-~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
... ..+ +--.+++|+.|++..+.+ ......+..+.. ...++|+|+|+||+|+.......+..+.+- .....
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll-~~~~~ 312 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELL-QTIID 312 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHH-HHHHh
Confidence 111 111 224789999999987654 444444444433 234899999999999976544433332221 12224
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..+++++.+|..+.+|+.++-....+.+...+-
T Consensus 313 ~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 313 DGNVKVVQTSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred ccCceEEEecccchhceeeHHHHHHHHHHHHHH
Confidence 566899999999999999999988887766644
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.60 E-value=3.7e-14 Score=105.89 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-- 84 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-- 84 (202)
+++.+++....+.++|+++|.+|+||||++|++++.....+....+.+........ ......+.++||||..+....
T Consensus 26 ~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~-~~~G~~l~VIDTPGL~d~~~~~e 104 (313)
T TIGR00991 26 ELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR-TRAGFTLNIIDTPGLIEGGYIND 104 (313)
T ss_pred HHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE-EECCeEEEEEECCCCCchHHHHH
Confidence 35667778888999999999999999999999998765433222222222111111 235678999999996543221
Q ss_pred -HHhhh------cCCCEEEEEEeCCCc--hhH-HHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 85 -WKSYT------RCTDGIIFVIDSTDV--ERM-EEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 85 -~~~~~------~~~d~~ilv~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
....+ ...|++++|.+++.. ... ..+...+...+.. .-..++||+.|++|..
T Consensus 105 ~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 105 QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccC
Confidence 11112 258999999766532 212 2222233333221 1245789999999975
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-14 Score=110.49 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=119.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC--C-------------ccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL--N-------------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
--+|+++.+...|||||+..|+.+... + .....|.|.-.....+ .++.+.++++||||+..|..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav-~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV-NYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee-ecCCeEEEEecCCCcCCccc
Confidence 457999999999999999999876421 1 1122356665555555 67889999999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH----HhCchhhcCcc
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK----LLGLYELNNMH 159 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~ 159 (202)
.....+...|++++++|+.+. .+...+..+...+.. +.+.|||+||+|.++......+.. ++.+..-..+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999863 344445445555554 778888999999988765544333 33333334568
Q ss_pred eEEEEEeeeecCC----------CHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGD----------GLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 186 (202)
.+|+++.|+..|. ++.-||+.|++.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 8999999998764 67788888777653
No 275
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=4.8e-14 Score=107.54 Aligned_cols=125 Identities=25% Similarity=0.359 Sum_probs=94.1
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+...+.+||++|+...+..|..++.+++++|+|+|+++- +.+......+..+.......+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457799999999999999999999999999999999863 5677777777777776666789999999999
Q ss_pred CCCCC------------------cCHHHHHHHhCch--hhc--CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLLGLY--ELN--NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~~~~--~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+..+ ........++... ... ....+..+.++|..-.++..+|+.+.+.+.....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence 96431 1222222222110 010 1346778889999999999999999998877653
No 276
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1e-14 Score=92.86 Aligned_cols=137 Identities=23% Similarity=0.168 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----CCCchhhHHhhhcCCCEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----QEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~d~~i 96 (202)
+|+++|..|+|||||.+++.+.... +..| ..+++ +.. -.+|||| +..+........+.+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKT-----QAve~---~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKT-----QAVEF---NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hccc-----ceeec---cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 6899999999999999999876421 1222 22222 111 1459999 3333344455568899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|-.++++++--.-. +. ....+|+|-|++|.|+.++...+.....+. ....-++|++|+.++.|+++
T Consensus 70 ~v~~and~~s~f~p~------f~--~~~~k~vIgvVTK~DLaed~dI~~~~~~L~-----eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 70 YVHAANDPESRFPPG------FL--DIGVKKVIGVVTKADLAEDADISLVKRWLR-----EAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred eeecccCccccCCcc------cc--cccccceEEEEecccccchHhHHHHHHHHH-----HcCCcceEEEeccCcccHHH
Confidence 999999876532211 01 122567999999999998766666666542 23456799999999999999
Q ss_pred HHHHHHH
Q psy1315 177 GINELYQ 183 (202)
Q Consensus 177 l~~~l~~ 183 (202)
+++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998764
No 277
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=1.1e-14 Score=107.65 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=73.4
Q ss_pred EEEEEEcCCCCCc---hhhHHhhh---cC--CCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 69 NFLIWDVGGQEKL---RPLWKSYT---RC--TDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 69 ~~~~~D~~G~~~~---~~~~~~~~---~~--~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+||+||+.+. ...+..+. .. ++++++++|+......... ..++...... ...+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 5889999997653 23333333 22 8999999999654333222 2222221111 112799999999999987
Q ss_pred CcCHHHHHHHhCc-----------------------hhhcC-cceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 140 AIQIKQIEKLLGL-----------------------YELNN-MHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 140 ~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..........+.. ..+.. ....+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 6554444433321 00101 22357899999999999999999988763
No 278
>KOG3905|consensus
Probab=99.58 E-value=4.4e-14 Score=104.34 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=121.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccc-ccccceEEEEEEcCCCCCchhhHHhhhcCC--
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQI-GKCKGINFLIWDVGGQEKLRPLWKSYTRCT-- 92 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-- 92 (202)
....-+|+|+|+.|+|||||+.+|.+.. ...+..|..|....+.- ...+..++.+|=..|......+....+...
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 3467789999999999999999999887 44455555555554432 123446788998889777666666665443
Q ss_pred --CEEEEEEeCCCchhH-HHHHHHHH------------------------HHHccCC-----------------------
Q psy1315 93 --DGIIFVIDSTDVERM-EEVKIELI------------------------KTIKNND----------------------- 122 (202)
Q Consensus 93 --d~~ilv~d~~~~~s~-~~~~~~~~------------------------~~~~~~~----------------------- 122 (202)
.++|++.|.+++... +.+..|.. ...+.+.
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 478889999997433 23222221 1111000
Q ss_pred -------------CCCCcEEEEeeCCCCCC-----CcCHHHHHHHhC--chhhcCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 123 -------------NFNVPILILANKQDLPN-----AIQIKQIEKLLG--LYELNNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 123 -------------~~~~pvivv~nK~Dl~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.-++|++||++|||... .....+..++++ +..||...+..+|++|+++..|++-+..+|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 01369999999999843 222333333332 3567788999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q psy1315 183 QLILKKRKLQKTNKM 197 (202)
Q Consensus 183 ~~~~~~~~~~~~~~~ 197 (202)
+..+-...+.+....
T Consensus 287 hr~yG~~fttpAlVV 301 (473)
T KOG3905|consen 287 HRSYGFPFTTPALVV 301 (473)
T ss_pred HHhcCcccCCcceEe
Confidence 998776665554433
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=4.2e-14 Score=118.54 Aligned_cols=125 Identities=18% Similarity=0.095 Sum_probs=84.5
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC---------------CCC----ccccccceeeEeecccccccceE
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ---------------YLN----TVPTIGFNCEKVKGQIGKCKGIN 69 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~ 69 (202)
+..+....+...+|+++|+.++|||||+++|+... +.. ...|+........+.. ....+.
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~ 87 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYL 87 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceE
Confidence 44455566778899999999999999999997531 111 1112222111111112 456789
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+.+|||||+.++.......++.+|++|+|+|+.+.-.... ...+...... +.|.++|+||+|...
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~~----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALKE----NVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHHc----CCCEEEEEEChhccc
Confidence 9999999999998888899999999999999875322222 1222222222 678899999999864
No 280
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.3e-13 Score=107.60 Aligned_cols=83 Identities=25% Similarity=0.351 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-----cccccceeeEeecc---------------cccccceEEEEEEcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-----VPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGG 77 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G 77 (202)
++|+++|.|++|||||+|+|.+.... .+ .|+.|........+ ........+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 11 23333222110000 0012346799999999
Q ss_pred C----CCchhh---HHhhhcCCCEEEEEEeCC
Q psy1315 78 Q----EKLRPL---WKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 78 ~----~~~~~~---~~~~~~~~d~~ilv~d~~ 102 (202)
. .....+ ....++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 223333 334489999999999996
No 281
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.56 E-value=9.7e-14 Score=105.51 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=100.3
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----CC-------CCcccccc-----------------ceee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD----QY-------LNTVPTIG-----------------FNCE 56 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----~~-------~~~~~~~~-----------------~~~~ 56 (202)
..++++...+...+.+.|.|.|++|+|||||+..+... .. ++.++..+ ..+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~ 121 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFI 121 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEE
Confidence 34566666666778899999999999999999987431 10 11111100 0011
Q ss_pred Eeecc----------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 57 KVKGQ----------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 57 ~~~~~----------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
..... .-+...+.+.++||+|.-..... ....+|.++++.+....+.+..... .+.
T Consensus 122 r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-- 193 (332)
T PRK09435 122 RPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-- 193 (332)
T ss_pred EecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh--
Confidence 11000 00123467899999995422222 4566999999987544344433321 111
Q ss_pred CCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhc-CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELN-NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...-++|+||+|+....... ++...+...... ..+..|++.+||+++.|++++++.|.+.+.
T Consensus 194 ----E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 194 ----ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ----hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22348999999987643222 233333211100 113358999999999999999999998653
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=6.1e-14 Score=101.26 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccc-cccceeeEeecccccccceEEEEEEcCCCCC--c--h---hh----HHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-TIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--L--R---PL----WKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~--~---~~----~~~ 87 (202)
++|+++|.+|+||||++|.+++........ ..+++........ ......+.++||||--+ . . .. ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 589999999999999999999887643331 1122222222111 34567899999999321 1 1 11 112
Q ss_pred hhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH-H--hCchhhcCcceEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK-L--LGLYELNNMHLYYI 163 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 163 (202)
.....|++++|+.+++.. .-.....++..++... -...++||.|..|........+... . -.+..+...++-.+
T Consensus 80 ~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp TTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 345689999999997321 1223333444444321 1356889999998766544322111 0 01122223445556
Q ss_pred EEeeee------cCCCHHHHHHHHHHHHHHHHh
Q psy1315 164 QATCAI------TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 164 ~~~Sa~------~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..+.+ ....+.+|++.|-+.+.++..
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 655554 335689999998888877653
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.51 E-value=1.3e-13 Score=117.04 Aligned_cols=131 Identities=13% Similarity=0.143 Sum_probs=89.9
Q ss_pred cchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------------cccccceee----Eeeccc-
Q psy1315 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------------VPTIGFNCE----KVKGQI- 62 (202)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------------~~~~~~~~~----~~~~~~- 62 (202)
....+.+..+....++..+|+++|+.++|||||+++|++...... ....|.+.. ...+..
T Consensus 3 ~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (836)
T PTZ00416 3 NFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD 82 (836)
T ss_pred ccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc
Confidence 345667777777778888999999999999999999986322100 000122222 111110
Q ss_pred ----ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 63 ----GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 63 ----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.+.....+.++||||+.++.......++.+|++|+|+|+.+.-... ....|..+... +.|+++++||+|+.
T Consensus 83 ~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 83 LEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQE----RIRPVLFINKVDRA 157 (836)
T ss_pred cccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHc----CCCEEEEEEChhhh
Confidence 0123577999999999999888888999999999999998642222 22334444333 68999999999997
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.51 E-value=5.2e-13 Score=105.77 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcC--
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRC-- 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~-- 91 (202)
.....-.|+|+|+.++|||||+.+|.+... ..++.|..|......-. ..+...+.+|-..|...+..+....+..
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 444667999999999999999999987653 33444544443333211 2234578999998877777776665543
Q ss_pred --CCEEEEEEeCCCchhHH-HHHHHH----------------------------HHHHc---cC-----------C----
Q psy1315 92 --TDGIIFVIDSTDVERME-EVKIEL----------------------------IKTIK---NN-----------D---- 122 (202)
Q Consensus 92 --~d~~ilv~d~~~~~s~~-~~~~~~----------------------------~~~~~---~~-----------~---- 122 (202)
--++|+|.|.+.|..+- .+..|+ ..... .. .
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 25889999999975432 211111 11000 00 0
Q ss_pred ---------------CCCCcEEEEeeCCCCCCCc-----C----HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 123 ---------------NFNVPILILANKQDLPNAI-----Q----IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 123 ---------------~~~~pvivv~nK~Dl~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.-++|++||++|+|..... . ...++..+ ..+|..++..+|+||++...|++.++
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~L--R~~cL~yGAsL~yts~~~~~n~~~L~ 256 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYL--RTFCLKYGASLIYTSVKEEKNLDLLY 256 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHH--HHHHHhcCCeEEEeeccccccHHHHH
Confidence 0037999999999975321 1 12233333 56777889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy1315 179 NELYQLILKKRKLQKT 194 (202)
Q Consensus 179 ~~l~~~~~~~~~~~~~ 194 (202)
.+|.+.+.......+.
T Consensus 257 ~yi~h~l~~~~f~~~~ 272 (472)
T PF05783_consen 257 KYILHRLYGFPFKTPA 272 (472)
T ss_pred HHHHHHhccCCCCCCc
Confidence 9999998876654433
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=3.8e-13 Score=114.87 Aligned_cols=149 Identities=20% Similarity=0.175 Sum_probs=93.0
Q ss_pred CCHHHHHHHhhcCCCCCc-----cccccceeeEeecccc-----------cccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 30 AGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQIG-----------KCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 30 ~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
++||||+.++.+...... +..+|.+.-....... ....-.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999987765321 2333433322221000 011123899999999999888888888899
Q ss_pred EEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HHHHHHH-------
Q psy1315 94 GIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IKQIEKL------- 149 (202)
Q Consensus 94 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~~~~~~------- 149 (202)
++++|+|+++ +.++..+. .+... +.|+++|+||+|+..... .......
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~----~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQY----KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHc----CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 33333322 22222 689999999999963211 0111110
Q ss_pred ----hCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 150 ----LGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 150 ----~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+....+ ......+++++||++|+|++++++.|..+..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 110100 0124678999999999999999998876544
No 286
>KOG0458|consensus
Probab=99.49 E-value=2.2e-13 Score=107.47 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------------------------CCccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------------------------LNTVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (202)
..+..++++|+|+..+|||||+.++++.-. .......|++.......+ +
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f-e 251 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF-E 251 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE-e
Confidence 456889999999999999999999876421 011233467777777666 6
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHH------HHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEE------VKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
.....+++.|.||+..|...+..-...+|+.|+|+|++.. .|+. ..+....+++... -..+||++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccccc
Confidence 7788999999999999988888888889999999999752 2321 2233344444322 56789999999998
Q ss_pred CCc------CHHHHHHHh-CchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NAI------QIKQIEKLL-GLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
+-. ....+..++ +.-.+ ...++.|++||+.+|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf-~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGF-KESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCc-ccCCcceEecccccCCccccc
Confidence 632 122334444 21222 345678999999999997654
No 287
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.49 E-value=7.8e-14 Score=106.80 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CCcccc--ccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 6 AAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LNTVPT--IGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
+.+...+..-...+++|+|+|.+|+|||||+|+|.+-.. ....++ ..+|.....+.. .+.-.+.+||.||....
T Consensus 22 s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 22 SKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp HHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGS
T ss_pred HHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCC
Confidence 334455555567899999999999999999999976322 111222 234455555544 33335899999994332
Q ss_pred hhhHHhh-----hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC--C-------CcC----H
Q psy1315 82 RPLWKSY-----TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP--N-------AIQ----I 143 (202)
Q Consensus 82 ~~~~~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~--~-------~~~----~ 143 (202)
......| +...|.+|++.+- .|.....++...+... ++|+++|-+|+|.. . ... .
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L 172 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL 172 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence 2222233 4557988887754 3555444555444443 89999999999851 1 111 1
Q ss_pred HHHHHHhCchhh-cCcceEEEEEeeeecC--CCHHHHHHHHHHHHHHHHhh
Q psy1315 144 KQIEKLLGLYEL-NNMHLYYIQATCAITG--DGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~--~~v~~l~~~l~~~~~~~~~~ 191 (202)
++++........ ......++|-+|+.+- .+...+.+.+.+-+..+++.
T Consensus 173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 122221111111 1234567888888754 45777888888777666543
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.49 E-value=2.8e-13 Score=115.21 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=91.7
Q ss_pred cchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------Cc---cccccceee----Eeeccc-
Q psy1315 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------NT---VPTIGFNCE----KVKGQI- 62 (202)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------~~---~~~~~~~~~----~~~~~~- 62 (202)
...++.+.++.....+..+|+++|+.++|||||+.+|+..... +. ....|.+.. ...+..
T Consensus 3 ~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (843)
T PLN00116 3 KFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT 82 (843)
T ss_pred ccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc
Confidence 3456777888888889999999999999999999999754321 00 000122222 121210
Q ss_pred ----------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 63 ----------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 63 ----------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
.....+.++++||||+.+|.......++.+|++|+|+|+.+.-.... ...|...... ++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~----~~p~i~~i 157 (843)
T PLN00116 83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGE----RIRPVLTV 157 (843)
T ss_pred cccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHC----CCCEEEEE
Confidence 02246788999999999999888898999999999999985433222 2233444333 78999999
Q ss_pred eCCCCC
Q psy1315 133 NKQDLP 138 (202)
Q Consensus 133 nK~Dl~ 138 (202)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999987
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.49 E-value=6.2e-14 Score=102.48 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCchhhHHhhh--------cCCCEEEEEEeCCC---chhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 69 NFLIWDVGGQEKLRPLWKSYT--------RCTDGIIFVIDSTD---VERMEEVK-IELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+.++|||||.++...+.... ...-++|+++|... +..|-... .-..-+.+. +.|.|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 688999999987766555554 44668899999753 33333221 112222222 799999999999
Q ss_pred CCCCcCH--------------------HHHHHHhCchhhcCcceE-EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 137 LPNAIQI--------------------KQIEKLLGLYELNNMHLY-YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 137 l~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.+.... ..+...+. ..+...... .++++|+.+++|+.+++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~-~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA-ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH-HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9872200 00111110 111123334 899999999999999999987764
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.7e-13 Score=101.23 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=102.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC----------Ccc----------------------ccccceeeEeecccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL----------NTV----------------------PTIGFNCEKVKGQIG 63 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~----------~~~----------------------~~~~~~~~~~~~~~~ 63 (202)
.+..++++.+|+..-|||||+-+|+++.-. ..+ ...|.|.+...--+
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF- 81 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF- 81 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec-
Confidence 356899999999999999999999876311 000 11234443322212
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI 143 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 143 (202)
.....+|.+-||||++.|...+..-...+|++|+++|+. .......+.-..+... ..-..+||.+||+||.+..+.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 456678999999999999999999989999999999995 4444433332222221 224578888999999886432
Q ss_pred HH---HHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 144 KQ---IEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 144 ~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
.. ..++..+...-......+++.||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 21 122222111112344589999999999864
No 291
>PTZ00258 GTP-binding protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=101.19 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccc--cc--------------ccceEEEEEEcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQI--GK--------------CKGINFLIWDVG 76 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~D~~ 76 (202)
-.+....++|+++|.|+||||||+|+|.+... ...+.+++|........ .+ .....+.++|+|
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 33456788999999999999999999987653 22222222222211111 01 113358999999
Q ss_pred CCCC-------chhhHHhhhcCCCEEEEEEeCC
Q psy1315 77 GQEK-------LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 77 G~~~-------~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
|... +.......++++|++++|+|..
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9331 2224445678899999999974
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.6e-13 Score=101.29 Aligned_cols=159 Identities=21% Similarity=0.041 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEE
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFV 98 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv 98 (202)
.|+..|+-..|||||+..+.+..-. +.....|++.+.-.+.. ......+.|+|.||++++-......+...|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~-~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR-KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec-cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 5788999999999999999886542 22222344444333322 34445899999999999988888888889999999
Q ss_pred EeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 99 IDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
++.++ ...........++.. ......++|+||+|..++...+.....+.... ...+.++|.+|+++|+|++++.
T Consensus 81 V~~de--Gl~~qtgEhL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l--~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 81 VAADE--GLMAQTGEHLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL--SLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EeCcc--CcchhhHHHHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc--ccccccccccccccCCCHHHHH
Confidence 99973 222222222222332 12455699999999987654444433332211 1456778999999999999999
Q ss_pred HHHHHHHH
Q psy1315 179 NELYQLIL 186 (202)
Q Consensus 179 ~~l~~~~~ 186 (202)
+.|.++..
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99999885
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=1.6e-12 Score=94.65 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=85.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
......|+++|.+|+|||||++.+.+.... ......|. +... ......+.++||||.. ......++.+|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~--~~~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV--TGKKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE--ecCCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 456788999999999999999999865321 11122221 1111 2345678899999853 223344678999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCCCCCCCcC-HHHHHHHhCchhh-cCcceEEEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQDLPNAIQ-IKQIEKLLGLYEL-NNMHLYYIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~ 171 (202)
+++++|++....... ..+...... .+.|. ++|+||+|+.+... .......+..... ......+++++||+++
T Consensus 107 VllviDa~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 107 VLLLIDASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEEecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999975433222 222222222 15674 45999999974322 2222222221111 0124578999999987
Q ss_pred CC
Q psy1315 172 DG 173 (202)
Q Consensus 172 ~~ 173 (202)
-.
T Consensus 182 ~~ 183 (225)
T cd01882 182 GR 183 (225)
T ss_pred CC
Confidence 54
No 294
>KOG0082|consensus
Probab=99.46 E-value=2.4e-12 Score=97.53 Aligned_cols=126 Identities=23% Similarity=0.344 Sum_probs=93.7
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV----------ERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
.+...+.+.|+|||...+.-|.+++.+++++|+|+++++= ..+......+..+.......+.++|+.+||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 4557899999999998899999999999999999998752 234455567777777777779999999999
Q ss_pred CCCCCC-----------------cCHHHHHHHh-----CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 135 QDLPNA-----------------IQIKQIEKLL-----GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 135 ~Dl~~~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
.|+-.+ ...++...++ .+... ....+....+.|+.-.+|+.+|..+.+.+..+..+
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~-~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKN-KDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcc-cCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 998531 1112222222 11111 12466778889999999999999999999877653
No 295
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=2.9e-12 Score=91.43 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~ 145 (202)
....++++.|..-.....+.. +|.+|.|+|+.+.++... ...... ...-++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~l---~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPEL---ADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchhh---hCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 456678888843222222222 588999999986544321 111111 2344899999999853 23333
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+...+.. + ....+++++||++|+|++++++++.+.+
T Consensus 160 ~~~~~~~--~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKK--M--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHH--h--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333321 1 3467899999999999999999998654
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.43 E-value=1e-11 Score=94.31 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------C-----CCcccc------------------ccceeeE
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------Y-----LNTVPT------------------IGFNCEK 57 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------~-----~~~~~~------------------~~~~~~~ 57 (202)
.++..+.+.......|+|+|++|+|||||+..+.... . ++..+. .+.....
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRS 101 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeee
Confidence 4556666667788999999999999999999975420 0 000110 0000000
Q ss_pred eecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC
Q psy1315 58 VKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND 122 (202)
Q Consensus 58 ~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~ 122 (202)
.... .-+...+.+.|+||+|.-. .....+..+|.++++-... +.+.+......+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l----- 170 (300)
T TIGR00750 102 MPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQGIKAGL----- 170 (300)
T ss_pred cCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHHHHHHH-----
Confidence 0000 0022357789999998432 1123466688888886543 233333222222
Q ss_pred CCCCcEEEEeeCCCCCCCcCHHHHHHHh--Cchhh-c--CcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 123 NFNVPILILANKQDLPNAIQIKQIEKLL--GLYEL-N--NMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 123 ~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+|.++|+||+|+............+ ....+ . ..+..+++++||+++.|++++++++.+...
T Consensus 171 -~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 -MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred -hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 257889999999997654322211111 00111 0 123346899999999999999999988643
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.43 E-value=1.1e-11 Score=95.33 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----CCC-----------Ccccccc---ceeeEee-------ccc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD----QYL-----------NTVPTIG---FNCEKVK-------GQI 62 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----~~~-----------~~~~~~~---~~~~~~~-------~~~ 62 (202)
+.+..+.+....+.|+|+|+.++|||||+++|++. ... -..+..| +|+.... +..
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 66778889999999999999999999999999987 222 1223344 4443333 322
Q ss_pred ccccceEEEEEEcCCCC--------Cchh---------------------hHHhhhc-CCCEEEEEE-eCC----CchhH
Q psy1315 63 GKCKGINFLIWDVGGQE--------KLRP---------------------LWKSYTR-CTDGIIFVI-DST----DVERM 107 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~--------~~~~---------------------~~~~~~~-~~d~~ilv~-d~~----~~~s~ 107 (202)
.++-...+.++||+|.. +... -+...+. ++|+.|+|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 23445788999999811 1111 1445556 899999998 653 11233
Q ss_pred -HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee--cCCCHHHHHHHH
Q psy1315 108 -EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI--TGDGLHEGINEL 181 (202)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~l~~~l 181 (202)
....+++..+... ++|+++|.|++|...... ..+...+ ....+.+++++|+. +...+..+++.+
T Consensus 166 ~~aEe~~i~eLk~~----~kPfiivlN~~dp~~~et-~~l~~~l-----~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 166 VEAEERVIEELKEL----NKPFIILLNSTHPYHPET-EALRQEL-----EEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hHHHHHHHHHHHhc----CCCEEEEEECcCCCCchh-HHHHHHH-----HHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 3344555555554 899999999999443322 2222211 12234676777654 233444444443
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.40 E-value=1.9e-12 Score=93.71 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=99.4
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccccc------------------cee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPTIG------------------FNC 55 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~~~------------------~~~ 55 (202)
..++++.+.+...+.+.|.+-|+||+|||||+..|... +. ++.+|..| +..
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 34677888887788999999999999999999998431 11 12222211 111
Q ss_pred eEeecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 56 EKVKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 56 ~~~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
...... +.+--.+.+.+++|.|--. .--....-+|.+++|..+.-.+..+.+..-+.++
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--- 168 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--- 168 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---
Confidence 111110 0022345688889987321 1123345699999999987666666555444444
Q ss_pred CCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+-++|+||+|...... ..+++..+.+..- ...+..|++.|||.++.|++++++.|.+..
T Consensus 169 ------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 ------ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4479999999654422 3334444432211 234668999999999999999999987744
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.40 E-value=3.9e-12 Score=107.06 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc------------c---ccccceeeE----eecccccccc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT------------V---PTIGFNCEK----VKGQIGKCKG 67 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~------------~---~~~~~~~~~----~~~~~~~~~~ 67 (202)
+.+..+....++..+|+++|+.++|||||+.+|+....... . ...+.+... ..+.. ..+.
T Consensus 8 ~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~ 86 (731)
T PRK07560 8 EKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY-EGKE 86 (731)
T ss_pred HHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe-cCCc
Confidence 34455556677788999999999999999999975321100 0 001122111 11211 3356
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+.+.++||||+.++.......++.+|++|+|+|+...-... ....+...... +.|.|+++||+|...
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 78999999999999888888999999999999987542222 22233333332 567899999999863
No 300
>KOG3886|consensus
Probab=99.40 E-value=1.3e-12 Score=92.26 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=96.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-----hhHHhhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-----PLWKSYTRCTD 93 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----~~~~~~~~~~d 93 (202)
.-||+++|.+|+||||+-..++.+.........|-|.+....+..--....+.+||++|++.+- ......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999877666444333333445544544444423455789999999988432 24456788899
Q ss_pred EEEEEEeCCCchhHHH---HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHH--HHhCchhhcCcceEEEEEeee
Q psy1315 94 GIIFVIDSTDVERMEE---VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIE--KLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~---~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++++|||++..+-..+ ....+..+++ ..+...+.+..+|+|+......+.+- ............++.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986543333 2333333444 46677888889999997654443322 222223344556688899887
Q ss_pred ec
Q psy1315 169 IT 170 (202)
Q Consensus 169 ~~ 170 (202)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 54
No 301
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-12 Score=96.95 Aligned_cols=164 Identities=20% Similarity=0.068 Sum_probs=108.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCC---CC-----------ccccc-----ccee-eEeeccc-c-----c-ccceE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQY---LN-----------TVPTI-----GFNC-EKVKGQI-G-----K-CKGIN 69 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~---~~-----------~~~~~-----~~~~-~~~~~~~-~-----~-~~~~~ 69 (202)
+..++|.++|+...|||||..+|.+--- .+ |..+. .+.. ..+.... + . .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976421 10 00000 0000 0000000 0 0 11246
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc----CHHH
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI----QIKQ 145 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~----~~~~ 145 (202)
+.|+|.||++..-..+.+-..--|++++|+++++++.-......+..+.-. .-+.+|++-||+|+...+ ..++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 889999999866655555555579999999999877665555444333211 146789999999998753 3344
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++.|++- . -..+.|++++||..+.|++-+++.|.+.+.
T Consensus 165 Ik~FvkG-t--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKG-T--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhcc-c--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 5555542 1 135789999999999999999999988764
No 302
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=1.1e-12 Score=86.70 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=77.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-c-ccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-V-PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+|++++|+.|+|||+|+.++....+... . ++.+ +......+.+.++.+++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~ 52 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ 52 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence 5899999999999999999976665421 1 2222 22334456677899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
||+.++.+++... |...+... ...+.|.++++||.|+........ .....++++|++++.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~------------~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVAT------------EEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCH------------HHHHHHHHHhCCCcchhh
Confidence 9999998888765 55444433 345789999999999743221111 111235678899999884
No 303
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=1.6e-12 Score=95.75 Aligned_cols=96 Identities=23% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
+++..+.+.+++++|.+++|||++++. ++..+.+|+..... .+.|+++|+||+||.+...... ... ..+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~--~~~--~~~-~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEK--EQL--DIY-R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHH--HHH--HHH-H
Confidence 667778888999999999999999877 89898888875543 3799999999999975433221 111 112 2
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..+++++++||++|.|++++|+.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 35678999999999999999998764
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.37 E-value=8.1e-12 Score=87.02 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=42.7
Q ss_pred EEEEEEcCCCC----CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 69 NFLIWDVGGQE----KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 69 ~~~~~D~~G~~----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
.+.++|+||.. .....+..+++.+|++|+|.+.+...+-.... .+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC---CCeEEEEEcCC
Confidence 48999999932 23467888889999999999998754444333 333333322 44589999984
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=8.7e-12 Score=95.60 Aligned_cols=82 Identities=21% Similarity=0.158 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeE----eecccc------------cccceEEEEEEcCCCCC---
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEK----VKGQIG------------KCKGINFLIWDVGGQEK--- 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~D~~G~~~--- 80 (202)
++|+++|.|++|||||+|++.+... ...+.+++|... ..+.-. ......+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 7899999999999999999998763 222222222221 121100 00113589999999432
Q ss_pred ----chhhHHhhhcCCCEEEEEEeCC
Q psy1315 81 ----LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 81 ----~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
........++++|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2223445578899999999984
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.1e-11 Score=95.12 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.4
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC--CC----------C-----------CccccccceeeEeecccccccceE
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD--QY----------L-----------NTVPTIGFNCEKVKGQIGKCKGIN 69 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~--~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (202)
.....++-+++++-+|.+|||||..+|+-- -. . +....++++.....+ ++..+.
T Consensus 6 ~~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF---~Y~~~~ 82 (528)
T COG4108 6 AQEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF---DYADCL 82 (528)
T ss_pred HHHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe---ccCCeE
Confidence 334556778999999999999999998521 10 0 112334566666666 677889
Q ss_pred EEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 70 ~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
+++.||||++.|+.-+...+.-+|++|+|+|+- ...+.-...+.+.++ ..+.|++-.+||+|-..
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred EeccCCCCccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHh---hcCCceEEEeecccccc
Confidence 999999999999988888888899999999986 345444444445544 45899999999999654
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=5.4e-11 Score=86.79 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=71.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-------ccc--------------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-------PTI-------------------------------------- 51 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-------~~~-------------------------------------- 51 (202)
-....++++|+.|+||||+++.+.+..+.+.. |+.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 46678999999999999999999886521110 000
Q ss_pred -----cceeeEeecccccccceEEEEEEcCCCCC-------------chhhHHhhhcC-CCEEEEEEeCCCchhHHHHHH
Q psy1315 52 -----GFNCEKVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYTRC-TDGIIFVIDSTDVERMEEVKI 112 (202)
Q Consensus 52 -----~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~ 112 (202)
++.-..+.+.+.......+.++|+||-.. ...+...|+++ .+++++|+|+...-.-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 01111111111122335789999999531 22356677785 458889998763212112112
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
....+. ..+.|+++|+||+|..+.
T Consensus 184 ia~~ld----~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVD----PQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH----HcCCcEEEEEECCCCCCc
Confidence 222222 237899999999998754
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.34 E-value=1e-10 Score=86.02 Aligned_cols=170 Identities=17% Similarity=0.210 Sum_probs=108.0
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccccc------------------cee
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPTIG------------------FNC 55 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~~~------------------~~~ 55 (202)
+.+++..+.+...+...|.+.|.||+|||||+..|... +. ++.+|-.| ...
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFi 116 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFI 116 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEE
Confidence 45778888889999999999999999999999988432 10 11122111 111
Q ss_pred eEeecc---------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHcc
Q psy1315 56 EKVKGQ---------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120 (202)
Q Consensus 56 ~~~~~~---------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 120 (202)
...... ..+--.+.+.|++|.|--.. --.....+|.++++.-..-.+..+.+..-+.++
T Consensus 117 Rs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--- 190 (323)
T COG1703 117 RSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--- 190 (323)
T ss_pred eecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh---
Confidence 111000 01223456888899873211 113445589999999876666666666554444
Q ss_pred CCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchh---hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 121 NDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYE---LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 121 ~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
--++|+||.|..... ...++...+.... -...+..|++.|||.+|+|++++++.|.+...
T Consensus 191 ------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 191 ------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 347899999965542 2223333333321 12347788999999999999999999887654
No 309
>KOG1144|consensus
Probab=99.30 E-value=1.1e-11 Score=100.51 Aligned_cols=166 Identities=22% Similarity=0.197 Sum_probs=106.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-----CccccccceeeEeec------ccc-----cccceEEEEEEcCCCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-----NTVPTIGFNCEKVKG------QIG-----KCKGINFLIWDVGGQEK 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~D~~G~~~ 80 (202)
-+.+-||++|+..+|||-|+..+.+.... ....-+|.|+..... .+. ...--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 36678999999999999999998764331 223334555544331 000 12223478899999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCC------CcCH----------
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPN------AIQI---------- 143 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~------~~~~---------- 143 (202)
|..+.......||.+|+|+|+... ++... .-+..+ ...+.|+||.+||+|-.- ....
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lL----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLL----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhccccccceEEEEeehhcc--CCcchhHHHHHH----HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 999999999999999999999742 22111 111122 233899999999999642 0000
Q ss_pred --HHH------------HHHhCchhhc----CcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 144 --KQI------------EKLLGLYELN----NMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 144 --~~~------------~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.++ ++.+....+. ...-+.++++||.+|+||.+|+-+|+++....
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 000 1111111110 12346689999999999999999999977644
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.5e-11 Score=89.98 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=101.5
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcC----------CC-----CCccccccceeeEeecccccccceEEEEEEcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFD----------QY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
...+.+.+.+|..+|+...|||||..++... .| .+.....|+|.......+ ......+..+|+|
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahvey-et~~rhyahVDcP 83 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEY-ETANRHYAHVDCP 83 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEE-ecCCceEEeccCC
Confidence 3457789999999999999999999887431 11 112223356665555444 4566678889999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCHH-----HHHHHh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQIK-----QIEKLL 150 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~-----~~~~~~ 150 (202)
|+..|-..+..-....|+.|+|+++++. .+...+..++...+. +.| ++++.||+|+.++.+.- ++.+.+
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 9999988888877889999999999873 233434444433333 554 56667999998743222 234444
Q ss_pred CchhhcCcceEEEEEeeeec
Q psy1315 151 GLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~ 170 (202)
..+.+ .....|++.-||..
T Consensus 159 s~y~f-~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGF-PGDDTPIIRGSALK 177 (394)
T ss_pred HHcCC-CCCCcceeechhhh
Confidence 43333 33577888888763
No 311
>KOG0461|consensus
Probab=99.29 E-value=6.2e-11 Score=88.65 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=95.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC----CC--Ccccccc------ceeeEeecc--cccccceEEEEEEcCCCCCchh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ----YL--NTVPTIG------FNCEKVKGQ--IGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~----~~--~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
..+++.++|+..||||||.+++..-. |+ +.+.+.| +.......+ .+.++...+.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 45999999999999999999996421 21 1222222 222222221 2356678899999999865554
Q ss_pred hHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHH-------HHHHhCchhh
Q psy1315 84 LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQ-------IEKLLGLYEL 155 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~-------~~~~~~~~~~ 155 (202)
......+-.|..++|+|+.....-+...-.+.-.+. -...|||.||.|...+ ..... ++..++...
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~- 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG- 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC-
Confidence 444455557999999999743222211111111111 2345677788776433 22222 222222111
Q ss_pred cCcceEEEEEeeeecC----CCHHHHHHHHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITG----DGLHEGINELYQLILK 187 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~----~~v~~l~~~l~~~~~~ 187 (202)
...+.|++++||..| +++.++.+.+...+.+
T Consensus 160 -f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 160 -FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred -cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 235689999999999 6677777766666543
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.29 E-value=1.6e-11 Score=88.50 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--C-------cc---c-----cccceeeEeec---------------cc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--N-------TV---P-----TIGFNCEKVKG---------------QI 62 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~-------~~---~-----~~~~~~~~~~~---------------~~ 62 (202)
..+....|+|+|.+|+|||||+++++..... . .. . ..+........ ..
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3556889999999999999999999753110 0 00 0 00000000000 00
Q ss_pred ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
.......+.++|+.|.-.... .+....+..+.|+|+.+.+.... . ... ....|.++++||+|+.+...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVG 165 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccch
Confidence 001133567778777211100 11123455667777764332111 0 011 11567899999999975422
Q ss_pred --HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 143 --IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.......+. .. ....+++++||+++.|++++++++.+.
T Consensus 166 ~~~~~~~~~l~--~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 FDVEKMKADAK--KI--NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHHHHHHHHH--Hh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233333322 11 245789999999999999999998764
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.28 E-value=7e-11 Score=95.81 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch-------hh---H
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-------PL---W 85 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~ 85 (202)
....++|+++|.+|+||||++|++++............+........ ......+.++||||..... .. .
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-EECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34567899999999999999999999865433222122222222211 2245679999999944321 11 2
Q ss_pred Hhhhc--CCCEEEEEEeCCCchhH-H--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 86 KSYTR--CTDGIIFVIDSTDVERM-E--EVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 86 ~~~~~--~~d~~ilv~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..++. .+|++|+|..++..... + .+.+.+..++.. .--..+|||.|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~--~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP--SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH--HhHcCEEEEEeCCccCC
Confidence 22333 47999999987633221 1 222333333332 11457899999999864
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.26 E-value=3.5e-11 Score=90.09 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----------ccccceeeEeecccccccceEEEEEEcCCCCCc---hhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL---RPL 84 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~ 84 (202)
.++|+|+|..|+|||||+|.|++....... ++..+......... ++..+.+.++||||.... ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEEEEeCCCccccccchhh
Confidence 589999999999999999999986543211 11123333333322 445678999999992210 000
Q ss_pred -----------HHhhh-------------cCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 -----------WKSYT-------------RCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 -----------~~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
...++ .+.|+++|+++++. .++..+.- .+..+.. .+++|-|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK-----RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT-----TSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc-----cccEEeEEecccccC
Confidence 11111 12589999999875 33333332 3333332 678999999999876
Q ss_pred CcCHHH
Q psy1315 140 AIQIKQ 145 (202)
Q Consensus 140 ~~~~~~ 145 (202)
..+...
T Consensus 157 ~~el~~ 162 (281)
T PF00735_consen 157 PEELQA 162 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 315
>KOG0468|consensus
Probab=99.24 E-value=1.1e-10 Score=93.72 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=91.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc----------cc------ccceeeE----eeccccccc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV----------PT------IGFNCEK----VKGQIGKCK 66 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~----------~~------~~~~~~~----~~~~~~~~~ 66 (202)
+++.-+........+++++|+-++|||+|+..|..+..+... .+ .|++... ....-.+++
T Consensus 116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K 195 (971)
T KOG0468|consen 116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK 195 (971)
T ss_pred HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence 455666777888899999999999999999999876433211 00 1222111 111112567
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+-+++.||||+..|.......++-+|++++|+|+-+.-.+.. .+.+....+. +.|+++|.||.|.
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~----~~~i~vviNKiDR 261 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN----RLPIVVVINKVDR 261 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc----cCcEEEEEehhHH
Confidence 7889999999999999999999999999999999986544443 3344444443 8999999999996
No 316
>KOG0705|consensus
Probab=99.24 E-value=1.7e-11 Score=96.28 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=118.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.-.++|++++|..++|||+|+++++...|... .|.-|.....+.. ++....+.+.|.+|... ..|...+|+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv---~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVV---DGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEe---eccceEeeeecccCCch-----hhhhhhccc
Confidence 34689999999999999999999999988644 4443443333433 56677788889888433 356678999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+||.+.+..+|+.+......+..+......|+++++++.-.... ....+...+ ...+....+.+|++++.+|.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r---~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRAR---QLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHH---HHHHhcCccceeecchhhhh
Confidence 9999999999999998888777776655668899998886432211 111222222 12234566788999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
++..+|+.+..++...+
T Consensus 176 nv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 176 NVERVFQEVAQKIVQLR 192 (749)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999988776553
No 317
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=8e-11 Score=81.54 Aligned_cols=151 Identities=19% Similarity=0.050 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc------------------ccceeeEeecc-c----------------c
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT------------------IGFNCEKVKGQ-I----------------G 63 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~------------------~~~~~~~~~~~-~----------------~ 63 (202)
-+.|.|.|++|||||+|+.+++......+... .+.....+... . .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 48999999999999999999764321110000 11111111110 0 0
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI 143 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 143 (202)
......+.|++..|+- ...-++--..+.-|+|+|++..+.... +....-...-++|+||.|+......
T Consensus 93 ~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhCc
Confidence 1111356666766621 111111122348889999875432110 0000001256899999999876443
Q ss_pred --HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 144 --KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+.+....+ . -.+..+++++|+++|+|++++++|+....
T Consensus 161 dlevm~~da~--~--~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAK--E--VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHH--H--hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 44433322 1 24678999999999999999999987653
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.4e-10 Score=95.93 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-----C------------ccccccceeeEeeccccccc-ceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-----N------------TVPTIGFNCEKVKGQIGKCK-GINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G 77 (202)
.++.-+|+++|+-++|||||..+++..... + .....|.|........ ..+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~-~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL-FWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE-EEcCceEEEEeCCCC
Confidence 557789999999999999999999753211 0 1111234444333322 334 58999999999
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+-+|.......++-.|++|+|+|+...-..+. ...|.....+ ++|.+++.||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~~----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADKY----GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhhc----CCCeEEEEECcccccc
Confidence 99999999999999999999999985433333 2344444444 8999999999998654
No 319
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.18 E-value=1.6e-10 Score=90.93 Aligned_cols=120 Identities=25% Similarity=0.362 Sum_probs=86.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
....+.++|++|+...+.-|..++.+++++|+|+++++ ...+.+....+..+.......+.|+||+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 56678999999999889999999999999999999864 23466677788888877667799999999999
Q ss_pred CCCCC--------------------cCHHHHHHHh-----CchhhcCc-ceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 136 DLPNA--------------------IQIKQIEKLL-----GLYELNNM-HLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 136 Dl~~~--------------------~~~~~~~~~~-----~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
|+... ........++ ........ ..+.++.|+|....++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 97321 1222222222 11111111 566778899999999999999887653
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.8e-10 Score=83.50 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-------CCccccccceeeEe----ecc--c---ccccceEEEEEEcCC-----
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-------LNTVPTIGFNCEKV----KGQ--I---GKCKGINFLIWDVGG----- 77 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~~~~~~~~~~~~----~~~--~---~~~~~~~~~~~D~~G----- 77 (202)
.++++++|-|+||||||+|+++.... ....|..|..+-.. .+. . .......+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999987652 11223333222111 000 0 012345789999998
Q ss_pred --CCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 78 --QEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 78 --~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.+.+.......++.+|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34566677788899999999999874
No 321
>KOG0410|consensus
Probab=99.14 E-value=2.4e-10 Score=84.81 Aligned_cols=154 Identities=20% Similarity=0.153 Sum_probs=99.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---CccccccceeeEeecccccccceEEEEEEcCCCC---------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE---------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~ 82 (202)
...+..-|.++|-.++|||||+++|...... .-..|...|...... +....+.+.||-|.- .|.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L----psg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL----PSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC----CCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 4567788999999999999999999955432 224555566666665 334467888999921 122
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCC----cEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV----PILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~----pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
. .......+|.++.|.|+++|+--......+.-+... .-+.. .++=|-||.|........ +.
T Consensus 250 A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~------------E~ 315 (410)
T KOG0410|consen 250 A-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEE------------EK 315 (410)
T ss_pred H-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCcc------------cc
Confidence 2 223346699999999999987665544443333332 22222 345566777765432211 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.+ -+.+|+.+|+|++++...+-..+...
T Consensus 316 n~--~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 316 NL--DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred CC--ccccccccCccHHHHHHHHHHHhhhh
Confidence 11 56789999999999999887766543
No 322
>KOG1707|consensus
Probab=99.13 E-value=5.7e-10 Score=88.56 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+.+.++|+.++|||.|++.+.+..+.. +..+....+....+.+ .+....+.+.|.+-. ....+...- ..+|
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee-ccccceEEEeecCcc-ccccccCcc-ceee
Confidence 34578999999999999999999999987753 2233333333333333 355667777777743 111111111 6699
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-----CHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-----QIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.++||.+++.+|......+...... ...|.++|++|+|+.+.. ++.+....+. -..| +..|.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~-------i~~P-~~~S~ 566 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG-------LPPP-IHISS 566 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC-------CCCC-eeecc
Confidence 999999999999999988766654443 489999999999997643 2223333221 1222 33444
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+. .+=.++|..|......
T Consensus 567 ~~-~~s~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 567 KT-LSSNELFIKLATMAQY 584 (625)
T ss_pred CC-CCCchHHHHHHHhhhC
Confidence 43 2228889888876643
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=1.1e-10 Score=86.85 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=40.5
Q ss_pred CCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
..+-++|+||+|+.... ........++ . ..+..+++++||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr--~--lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAR--E--VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHH--h--hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999997632 2333333221 1 2356889999999999999999999764
No 324
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.12 E-value=3e-10 Score=78.30 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.+.++|+++|.||+|||||+|++.+.....+.++.|.|.....+.. .. .+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~~--~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--MK--RIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--CC--CEEEEECcC
Confidence 3578899999999999999999999887777888887776655533 12 367999999
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.08 E-value=6.6e-10 Score=76.47 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+..++.++++++|++|+|+|++++...... .+..... ..+.|+++|+||+|+........... +....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~------~~~~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKS------IKESEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHH------HHHhCC
Confidence 456778888899999999999875432221 1112111 12689999999999864322211111 111234
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++||+++.|++++++.+.+.+.
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHh
Confidence 67899999999999999999988765
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.07 E-value=4e-10 Score=83.86 Aligned_cols=80 Identities=24% Similarity=0.138 Sum_probs=49.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCCccccccceee----Eeecccc------------cccceEEEEEEcCCCCC-----
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCE----KVKGQIG------------KCKGINFLIWDVGGQEK----- 80 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~D~~G~~~----- 80 (202)
|+++|.|+||||||+|++.+.... ...-+++|.. .+.+.-. ......++++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 579999999999999999987652 2111222211 2222100 00112589999999332
Q ss_pred --chhhHHhhhcCCCEEEEEEeCC
Q psy1315 81 --LRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 81 --~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
........++++|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2223445578899999999874
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=99.07 E-value=7.1e-10 Score=85.44 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=65.7
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
..+....+.++|.+++|+|+.++. ....+.+++..... .++|+++|+||+|+........+...+ ...+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~------~~~g 149 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRL------QQWG 149 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHH------HhcC
Confidence 345555689999999999998765 34455666655432 379999999999997543222222222 2345
Q ss_pred EEEEEeeeecCCCHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
++++++||+++.|++++++.+..
T Consensus 150 ~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 150 YQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred CeEEEEEcCCCCCHHHHhhhhcc
Confidence 67899999999999999998865
No 328
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.05 E-value=1.5e-09 Score=82.10 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=80.1
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------ccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
...+..-.++|.++|+.|+|||||+|.|++..... ..++..+......+.- ++....++++||||.-+
T Consensus 16 ~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 16 KLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGD 94 (373)
T ss_pred HHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEEEeccCCccc
Confidence 33344778999999999999999999998763211 2233344444444433 45567889999999221
Q ss_pred ---ch-----------hhHHhhh--------------cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 81 ---LR-----------PLWKSYT--------------RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 81 ---~~-----------~~~~~~~--------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
.. .+...|+ .+.|+++|.+.++. .++..+.-....-+.. .+.+|=|.
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI 169 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVI 169 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeee
Confidence 11 1222222 12689999998764 4444443333222222 56788888
Q ss_pred eCCCCCCCcCHHHHH
Q psy1315 133 NKQDLPNAIQIKQIE 147 (202)
Q Consensus 133 nK~Dl~~~~~~~~~~ 147 (202)
.|+|.....+....+
T Consensus 170 ~KaD~lT~~El~~~K 184 (373)
T COG5019 170 AKADTLTDDELAEFK 184 (373)
T ss_pred eccccCCHHHHHHHH
Confidence 999987654444433
No 329
>KOG2486|consensus
Probab=99.05 E-value=4.7e-10 Score=81.62 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=100.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCC----------CCCchh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~ 83 (202)
....+.++++|..++|||||++.++..+.. ...+..|.+.....+.+ .-.+.++|.|| .+.+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v----~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV----GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec----cceEEEEecCCcccccCCccCcchHhH
Confidence 356799999999999999999999876653 33446676666666544 22577899999 235566
Q ss_pred hHHhhhcCCCE---EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC------HHHHHH-HhCch
Q psy1315 84 LWKSYTRCTDG---IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ------IKQIEK-LLGLY 153 (202)
Q Consensus 84 ~~~~~~~~~d~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------~~~~~~-~~~~~ 153 (202)
+...|+.+-+- +.+.+|++ -.+...+......+.+ .++|+.+|.||||...... ...+.. +..+.
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~s--v~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDAS--VPIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeecc--CCCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 77777766543 33444544 2233333333333322 2899999999999854311 111111 22222
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
.-+.....|++.+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 222345567888999999999998766554
No 330
>KOG1491|consensus
Probab=99.05 E-value=5e-09 Score=78.38 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=59.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Ccc--ccccceeeEeec------------ccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTV--PTIGFNCEKVKG------------QIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~--~~~~~~~~~~~~------------~~~~~~~~~~~~~D~~G~ 78 (202)
.+..+.+++++||-|+||||||+|.+...... ... .|+..+...+.. .-.......+++.|++|-
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 45668999999999999999999999876542 111 111111111111 001223457899999982
Q ss_pred -------CCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 79 -------EKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 79 -------~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+....-..+.++.+|+++.|+++.+
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 3445567778899999999998764
No 331
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.03 E-value=6.8e-10 Score=77.39 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
....++++++|.||+|||||+|++.+.....+.+.+|+|.....+.. ...+.++||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DKKVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CCCEEEEECcC
Confidence 34568999999999999999999999887777788888876655533 12578999998
No 332
>KOG0085|consensus
Probab=99.01 E-value=1.2e-09 Score=77.70 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=91.9
Q ss_pred eEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCC
Q psy1315 56 EKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
..+.+++ +-..+.|.++|.+|+.....-|.+++.+.-.+++++.+++ .+.++.....+..++...+..+
T Consensus 188 Gi~eypf-dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~n 266 (359)
T KOG0085|consen 188 GIIEYPF-DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 266 (359)
T ss_pred cceecCc-chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccC
Confidence 3344444 4556778899999998888899999999888887776543 4456666667777777777889
Q ss_pred CcEEEEeeCCCCCCCc------------------CHHHHHHHhCchhh-----cCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 126 VPILILANKQDLPNAI------------------QIKQIEKLLGLYEL-----NNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.++|+..||.|+.++. .......++- ..+ ....-+.-.+++|+.-+|+.-+|..+.
T Consensus 267 ssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFIL-km~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 267 SSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFIL-KMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHH-HHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 9999999999986531 1111122211 111 112234455678999999999999999
Q ss_pred HHHHHHHh
Q psy1315 183 QLILKKRK 190 (202)
Q Consensus 183 ~~~~~~~~ 190 (202)
+.+.+...
T Consensus 346 DtiLq~~L 353 (359)
T KOG0085|consen 346 DTILQLNL 353 (359)
T ss_pred HHHHHhhh
Confidence 98877654
No 333
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.01 E-value=8.1e-10 Score=74.75 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
+++++|.+|+|||||+|++.+..........+.+.....+.. +. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-TP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-CC---CEEEEECCCc
Confidence 899999999999999999998887666666666666555543 21 5799999994
No 334
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=1.5e-09 Score=77.21 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=64.2
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhC-c-hhhcC
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLG-L-YELNN 157 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~-~-~~~~~ 157 (202)
+..++..+++++|++++|+|+.++..- |...+.. ...+.|+++|+||+|+..... ......... . .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888999999999999999865311 1111111 123689999999999965432 222222210 0 00001
Q ss_pred cceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 158 MHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 158 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.....++++||++++|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999988763
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=1.4e-09 Score=77.39 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=49.6
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC--------CCccccccceeeEeecccccccceEEEEEEc
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY--------LNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
...++.+.+.....+...++++|.+|+|||||+|+|.+... ...++..|+|.....+... . .+.++||
T Consensus 112 gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~~~Dt 187 (190)
T cd01855 112 GVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-N---GKKLYDT 187 (190)
T ss_pred CHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-C---CCEEEeC
Confidence 34455444444444567899999999999999999997542 2345556777777776552 1 4789999
Q ss_pred CC
Q psy1315 76 GG 77 (202)
Q Consensus 76 ~G 77 (202)
||
T Consensus 188 PG 189 (190)
T cd01855 188 PG 189 (190)
T ss_pred cC
Confidence 99
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=2.1e-09 Score=81.15 Aligned_cols=89 Identities=18% Similarity=0.097 Sum_probs=65.5
Q ss_pred HHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+..+.++|.+++|+|+.++. ++..+.+|+...... ++|+++|+||+|+.+......... .....+.++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~iIVlNK~DL~~~~~~~~~~~------~~~~~g~~v 141 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEPVIVLTKADLLDDEEEELELV------EALALGYPV 141 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCEEEEEEHHHCCChHHHHHHHH------HHHhCCCeE
Confidence 345588999999999999887 777777776655443 789999999999975421111111 112245789
Q ss_pred EEeeeecCCCHHHHHHHHHH
Q psy1315 164 QATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~ 183 (202)
+++||+++.|++++++.+..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999999988764
No 337
>KOG2655|consensus
Probab=98.97 E-value=6.6e-09 Score=79.12 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc----------cccccceeeEeecccccccceEEEEEEcCCCCC----
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT----------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---- 80 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---- 80 (202)
+..-.+++.++|+.|.|||||+|.|+....... ..+..+......+.- ++-...++++||||..+
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee-~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE-NGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC-CCeEEeeEEeccCCCcccccc
Confidence 344579999999999999999999987744311 112233333333322 45567888999999221
Q ss_pred ----------chhhHHhhh-----------c--CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 81 ----------LRPLWKSYT-----------R--CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 81 ----------~~~~~~~~~-----------~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
..+....|+ . +.|+++|.+..+. ..+..+.-....-+.. .+.+|-|..|+|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeecccc
Confidence 112222332 1 3699999999874 3344443333332222 6778888899998
Q ss_pred CCCcC
Q psy1315 138 PNAIQ 142 (202)
Q Consensus 138 ~~~~~ 142 (202)
.....
T Consensus 171 lT~~E 175 (366)
T KOG2655|consen 171 LTKDE 175 (366)
T ss_pred CCHHH
Confidence 76433
No 338
>KOG3887|consensus
Probab=98.96 E-value=2.6e-08 Score=71.32 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=103.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh---hHHhhhcCCCEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP---LWKSYTRCTDGI 95 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d~~ 95 (202)
..+|+++|.-.+||||+...++.+..+...--.+.|.....-.+ ....+.+++||.||+-.+-. -....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i-s~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI-SNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh-hhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45699999999999999988887776644333333333322223 34678899999999765432 245668889999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHc-cCCCCCCcEEEEeeCCCCCCCcCHHHHHH----H----hCchhhcCcceEEEEEe
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIK-NNDNFNVPILILANKQDLPNAIQIKQIEK----L----LGLYELNNMHLYYIQAT 166 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~pvivv~nK~Dl~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~ 166 (202)
|+|+|+.+ +-++.+.+......+ +...+++.+=|...|.|=..+....+.+. . +.-... ..-...|+.+
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gl-e~v~vsf~LT 183 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGL-EKVQVSFYLT 183 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhh-ccceEEEEEe
Confidence 99999975 233333333222222 22455788889999999765432222111 1 110111 2345667777
Q ss_pred eeecCCCHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
|. ....+-|.|..+++.+..+
T Consensus 184 SI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 184 SI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ee-cchHHHHHHHHHHHHHhhh
Confidence 76 4556889998888877644
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=4.2e-09 Score=72.49 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
......+++++|.+|+|||||++++.+.....+.++.|.+........ ...+.+|||||
T Consensus 97 ~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~DtpG 155 (156)
T cd01859 97 IDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI----TSKIYLLDTPG 155 (156)
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc----CCCEEEEECcC
Confidence 345678999999999999999999998776677778887654433322 22689999998
No 340
>KOG1954|consensus
Probab=98.94 E-value=2.1e-08 Score=75.97 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=81.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC--ccccccceeeEeeccc-------------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTIGFNCEKVKGQI------------------------------- 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~--~~~~~~~~~~~~~~~~------------------------------- 62 (202)
.....-|+++|.-..||||+++.|+...++. ..|.+...+.......
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 4567789999999999999999999988762 2222211111111110
Q ss_pred -------ccccceEEEEEEcCCCC-----------CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 63 -------GKCKGINFLIWDVGGQE-----------KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 63 -------~~~~~~~~~~~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
++.---.+.++||||.- .|.....=+..++|.|+++||+...+--++....+..+...
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---- 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---- 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----
Confidence 01111248999999932 34455666788899999999987554444444444444333
Q ss_pred CCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
.-.+-||.||.|-.+..+.-.+...
T Consensus 211 EdkiRVVLNKADqVdtqqLmRVyGA 235 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQLMRVYGA 235 (532)
T ss_pred cceeEEEeccccccCHHHHHHHHHH
Confidence 4456778999998776554444443
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=7.1e-09 Score=79.94 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=65.9
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
...|+|.+++|++++...++..+.+|+..... .++|+++|+||+|+............... + ...+++++++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y-~~~g~~v~~vS 189 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--Y-RNIGYRVLMVS 189 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHH--H-HhCCCeEEEEe
Confidence 35679999999999887888888888765432 37899999999999765332222222211 1 23457899999
Q ss_pred eecCCCHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQ 183 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~ 183 (202)
|+++.|++++++.+..
T Consensus 190 A~tg~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGEGLEELEAALTG 205 (347)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998865
No 342
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=4.2e-09 Score=79.92 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
...++|.+++|+|+.++...... .+|+..... .++|+++|+||+|+.+.. ........ .+ ...+++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~--~~-~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDL--EEARELLA--LY-RAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCH--HHHHHHHH--HH-HHCCCeEEEE
Confidence 46889999999999887665554 445444433 278999999999996332 11111111 11 2235689999
Q ss_pred eeecCCCHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQ 183 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~ 183 (202)
||+++.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988743
No 343
>KOG1486|consensus
Probab=98.90 E-value=6.6e-08 Score=69.76 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=59.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-ceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-FNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~ 88 (202)
+..-+|+++|-|.+|||||+..+..... .....+ +|...+...+ .++.-.+++.|.||.-+- ..+..+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi-~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVI-HYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceE-EecCceEEEecCcccccccccCCCCCceEEEE
Confidence 4567999999999999999998875432 112222 3334444433 667778999999994322 2334455
Q ss_pred hcCCCEEEEEEeCCCchh
Q psy1315 89 TRCTDGIIFVIDSTDVER 106 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s 106 (202)
.+.+|.+++|.|++..+.
T Consensus 137 ArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSED 154 (364)
T ss_pred eecccEEEEEecCCcchh
Confidence 677999999999986443
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=6.4e-09 Score=72.70 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=45.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.+|+|||||++++.+..+....+..+.+.....+.. . ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~-~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI-S---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe-c---CCEEEEECCCC
Confidence 4557999999999999999999999877666666666666655533 1 35789999994
No 345
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.87 E-value=4.5e-08 Score=74.60 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=98.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------------ccccccceeeEeeccc------c-------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------------TVPTIGFNCEKVKGQI------G------- 63 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~------~------- 63 (202)
+....++.+++.|+.+.|||||+-.|.....++ ...+...++..+-+.- .
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 346678999999999999999998886554321 0111112222221110 0
Q ss_pred -----cccceEEEEEEcCCCCCchhh--HHhhhcCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCC
Q psy1315 64 -----KCKGINFLIWDVGGQEKLRPL--WKSYTRCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 64 -----~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+....-+.++|+.|++.|... .-..-+..|-.++++.+++. ...+.. .+--+... ..|++|+.||+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a~----~lPviVvvTK~ 265 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALAM----ELPVIVVVTKI 265 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhhh----cCCEEEEEEec
Confidence 112234788999999987643 33445779999999999854 222222 22222222 78999999999
Q ss_pred CCCCCcCHHHH----HHHhC------------------chhh-cCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 136 DLPNAIQIKQI----EKLLG------------------LYEL-NNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 136 Dl~~~~~~~~~----~~~~~------------------~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
|+..+...... ...++ .... ....-.|+|.+|+.+|+|++-+.+.+..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 99764322211 11110 0011 1234689999999999999877666544
No 346
>KOG0460|consensus
Probab=98.85 E-value=9.4e-09 Score=76.99 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=101.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcC----------CCC-----CccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFD----------QYL-----NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.+.+.+.+|.-+|+...|||||..++..- +|. +.....|.|.....+.+ ......+-=+|+||+
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveY-eTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEY-ETAKRHYAHTDCPGH 127 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeee-eccccccccCCCCch
Confidence 35789999999999999999999887431 111 22233467776666644 444556667899999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HH----HHHHHhCch
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ-IK----QIEKLLGLY 153 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~----~~~~~~~~~ 153 (202)
.+|-..+..-...-|++|+|+.++|. .+...+..++...+.. -..++|..||.|+.++.+ .+ ++...+...
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF 203 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence 98888877777778999999999873 3555555555544431 246778889999985422 22 223333333
Q ss_pred hhcCcceEEEEEeeee
Q psy1315 154 ELNNMHLYYIQATCAI 169 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~ 169 (202)
.+ ...+.|++.-||.
T Consensus 204 gf-~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 204 GF-DGDNTPVIRGSAL 218 (449)
T ss_pred CC-CCCCCCeeecchh
Confidence 33 4467889888876
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.85 E-value=7.8e-09 Score=78.10 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=46.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.||||||||+|++.+.....+.+..|+|.....+.. ...+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCcEEEEECCCc
Confidence 4678999999999999999999999887777777887777655433 124789999994
No 348
>KOG0467|consensus
Probab=98.84 E-value=5.5e-09 Score=85.28 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=83.9
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------C---CCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------Y---LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
......-+|+++.+...|||||+..|+... | .+...+.|.|...-.+.. -.+.+.++++|+||+
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~-~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL-LHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-ccCceEEEEecCCCc
Confidence 345567789999999999999999997542 1 133445566666655433 347789999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCch---hHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVE---RMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
-+|.+...+..+-+|++++++|+-+.- +..-+++.|. .+...++|.||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 999999999999999999999986432 2222222222 2677889999999
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=7.6e-09 Score=77.75 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++++|.||+|||||+|++.+.....+.+..|+|.....+.. . -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~---~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-S---DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-C---CCEEEEECCCc
Confidence 3568999999999999999999998877777777777776655533 1 24789999995
No 350
>KOG0447|consensus
Probab=98.83 E-value=2.5e-07 Score=73.71 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=93.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----------------cccc---------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----------------VPTI--------------------------- 51 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----------------~~~~--------------------------- 51 (202)
.....+|+|||+..+||||.+..+...+..+- .|..
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 34678999999999999999988754432110 0000
Q ss_pred ---------ccee--eEeecccccccceEEEEEEcCCC-------------CCchhhHHhhhcCCCEEEEEEeCCCchhH
Q psy1315 52 ---------GFNC--EKVKGQIGKCKGINFLIWDVGGQ-------------EKLRPLWKSYTRCTDGIIFVIDSTDVERM 107 (202)
Q Consensus 52 ---------~~~~--~~~~~~~~~~~~~~~~~~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 107 (202)
|.|. ..+...+....--...++|.||. +....+...|+++.++||+|+.- .|.
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSV 461 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSV 461 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCc
Confidence 2111 22222222233346789999991 12345788999999999999964 345
Q ss_pred HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 108 EEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
+..+.....+..+....+...|+|.+|.|+.+. ..+..++..+.-..+ -.....||.+
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF-PMKALGYfaV 521 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF-PMKALGYFAV 521 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc-chhhcceeEE
Confidence 555556666666666779999999999999765 356666666543333 2233344444
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.1e-08 Score=79.01 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=90.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++-++|+|+||+|||||++.|+....- .|+.--...+++. .+++..+++.++|.. . ..+....+-+|+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk---~ti~~i~GPiTvv--sgK~RRiTflEcp~D--l-~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK---QTIDEIRGPITVV--SGKTRRITFLECPSD--L-HQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHH---hhhhccCCceEEe--ecceeEEEEEeChHH--H-HHHHhHHHhhhe
Confidence 3567888899999999999999999864211 1111111112221 467888999999942 2 233445566999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCC-cEEEEeeCCCCCCC-cCHHHHHHHhCchhhcC-cceEEEEEeeeec
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNV-PILILANKQDLPNA-IQIKQIEKLLGLYELNN-MHLYYIQATCAIT 170 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 170 (202)
+++.+|.. ..|+-....++.+.... +. .++-|+++.|+... .........++..-|.. ..+..+|..|...
T Consensus 137 VlLlIdgn--fGfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGN--FGFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccc--cCceehHHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987 55654444444444432 34 45677899999654 33445555554444433 3677888888653
No 352
>KOG1143|consensus
Probab=98.83 E-value=1.5e-08 Score=76.95 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=96.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------------ccc-------cccceeeEeeccc---------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------------TVP-------TIGFNCEKVKGQI---------GK 64 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------------~~~-------~~~~~~~~~~~~~---------~~ 64 (202)
-.++++++|...+|||||+--|..+..++ ... +.|++.....+.+ .+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 46899999999999999998776543210 111 1222222211111 12
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcC--CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRC--TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
...--++++|.+|+.+|.......+.. .|.+.+|++++.. ..+..+.-+-+.... ++|+.|+.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--i~~tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--ITWTTREHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--CccccHHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 223457899999988876554443332 6889999998743 333333333333322 899999999999977422
Q ss_pred HH----HHH-------------------HHh-CchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 143 IK----QIE-------------------KLL-GLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 143 ~~----~~~-------------------~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
.+ ++. +.+ .....+..+-.|+|.+|+.+|+|++-+...+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11 111 111 1122345667899999999999988765443
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=1.5e-08 Score=69.70 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.....+++++|.+|+|||||+|.+.+.......+..++|........ ...+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 45678999999999999999999998765444444555555554432 13588999998
No 354
>KOG0099|consensus
Probab=98.82 E-value=4.4e-08 Score=70.98 Aligned_cols=126 Identities=23% Similarity=0.366 Sum_probs=85.1
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.|++.|.+|+...+.-|..++....++|+|...+. .+.+.+....+..+.+........+|+.+||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 45679999999999999999999999999999998864 12334444445555555456678999999999
Q ss_pred CCCCC------------------------------cCHHHHHH-------HhCchhh--cCcceEEEEEeeeecCCCHHH
Q psy1315 136 DLPNA------------------------------IQIKQIEK-------LLGLYEL--NNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 136 Dl~~~------------------------------~~~~~~~~-------~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|+..+ ..+....+ ++..... .....+...++.|..-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 98531 00111110 1110000 012345566777999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy1315 177 GINELYQLILKKRKL 191 (202)
Q Consensus 177 l~~~l~~~~~~~~~~ 191 (202)
+|....+.+.+.+.+
T Consensus 360 VFnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHLR 374 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888776654
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=6.9e-08 Score=66.50 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=58.4
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
..+.++|++++|+|+.++..-. ...+...+.. ...+.|+++|+||+|+............+. .......+++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~-----~~~~~~~~~i 75 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILS-----KEYPTIAFHA 75 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHh-----cCCcEEEEEe
Confidence 3457899999999998763211 1122222222 123589999999999965432222222221 2222336889
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~ 186 (202)
||+.+.|++++++.+.+.+.
T Consensus 76 Sa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred eccccccHHHHHHHHHHHHh
Confidence 99999999999999977654
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.78 E-value=1.4e-08 Score=77.79 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=49.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++++|+|-|+||||||||+|.+.....+++.+|+|.....+...+ .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~----~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD----GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC----CeEEecCCCc
Confidence 345889999999999999999999999888888889999888876522 2889999993
No 357
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.6e-07 Score=61.64 Aligned_cols=149 Identities=20% Similarity=0.276 Sum_probs=77.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcC-CC-----------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG-GQ----------------- 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~----------------- 78 (202)
+..++|.+-|+||||||||+.++...-...-...-|+-+..+.- .+...-|.++|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~---gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE---GGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec---CCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 46789999999999999999988643211111122333333332 3445556666665 20
Q ss_pred ----CCch----hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh
Q psy1315 79 ----EKLR----PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150 (202)
Q Consensus 79 ----~~~~----~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 150 (202)
+.+. ......++.+|++| +|=- -.++.....+..........++|++.+..+-+-. + -++...
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEI--GpMElks~~f~~~ve~vl~~~kpliatlHrrsr~---P--~v~~ik 150 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEI--GPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH---P--LVQRIK 150 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecc--cchhhccHHHHHHHHHHhcCCCcEEEEEecccCC---h--HHHHhh
Confidence 0111 12233334456554 4433 2233333333333333233488988888766421 1 112211
Q ss_pred CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....+.+| .+.+|-+.+++.+.+.+..
T Consensus 151 ------~~~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 ------KLGGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ------hcCCEEEE----EccchhhHHHHHHHHHhcc
Confidence 22334443 5677777999888887753
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=6.9e-08 Score=66.35 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=55.5
Q ss_pred CEEEEEEeCCCchhHHHHHHHHH-HHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELI-KTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
|++++|+|+.++.+.... ++. .... ..++|+++|+||+|+........+...+ .......++.+||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~-----~~~~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYL-----RHSYPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHH-----HhhCCceEEEEeccCC
Confidence 789999999876544321 222 1222 2378999999999996542222221111 1122456899999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLIL 186 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~ 186 (202)
.|++++.+.+.+...
T Consensus 71 ~gi~~L~~~i~~~~~ 85 (155)
T cd01849 71 QGIEKKESAFTKQTN 85 (155)
T ss_pred cChhhHHHHHHHHhH
Confidence 999999999987754
No 359
>KOG1547|consensus
Probab=98.75 E-value=9.3e-08 Score=68.50 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC----------ccccccceeeEeecccccccceEEEEEEcCCCCC---ch
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---LR 82 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---~~ 82 (202)
..=.++|.|+|.+|.|||||+|.++...... +..|.......-.+.. ++-..+++++||||.-+ ..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE-~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE-KGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee-cceEEEEEEecCCCcccccCcc
Confidence 3457999999999999999999997654321 1112222111122211 33345678899999211 11
Q ss_pred -----------hhHHhhhc--------------CCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 83 -----------PLWKSYTR--------------CTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 83 -----------~~~~~~~~--------------~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+...|++ +.+++++.+..+. .++.-+.- .+..+.. -..+|-|.-|+|
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaD 195 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKAD 195 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecc
Confidence 12222222 2589999998875 44444332 2333332 356777788999
Q ss_pred CCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
...-++.....+.+.... ..+++.+++--+
T Consensus 196 tlTleEr~~FkqrI~~el--~~~~i~vYPq~~ 225 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKEL--EKHGIDVYPQDS 225 (336)
T ss_pred cccHHHHHHHHHHHHHHH--HhcCcccccccc
Confidence 876555555444443221 234555555443
No 360
>KOG0466|consensus
Probab=98.73 E-value=4.2e-09 Score=77.78 Aligned_cols=165 Identities=16% Similarity=0.065 Sum_probs=99.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC---CC-----------------------CccccccceeeE-------eeccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ---YL-----------------------NTVPTIGFNCEK-------VKGQI 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~---~~-----------------------~~~~~~~~~~~~-------~~~~~ 62 (202)
.+..++|.-+|+...||||++.++.+-. |- +.-|.+++.... ..-..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4568999999999999999999886532 10 000111100000 00000
Q ss_pred c--cc---cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 63 G--KC---KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 63 ~--~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
. .+ --..+.|+|+||+.-.-..+..-..--|++++++..++++........+..+.- ..-+.++++-||.|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhh
Confidence 0 00 013578999999875444433333446889999988765443333322222111 113568899999999
Q ss_pred CCCcCHH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 138 PNAIQIK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 138 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+.... .++.+++- ....+.|++++||.-..|++-+.++|+..+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~---t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQG---TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhc---cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 8754332 34444431 1346789999999999999999999998763
No 361
>KOG0448|consensus
Probab=98.71 E-value=4.3e-07 Score=73.84 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC--ccccc-------------------c----------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN--TVPTI-------------------G---------------------- 52 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~--~~~~~-------------------~---------------------- 52 (202)
...+.||+|.|..++||||++|+++..+..+ ..|+. +
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4568899999999999999999998765321 11111 0
Q ss_pred ---ceeeEeecccccc--cceEEEEEEcCC---CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 53 ---FNCEKVKGQIGKC--KGINFLIWDVGG---QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 53 ---~~~~~~~~~~~~~--~~~~~~~~D~~G---~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
...-.+.++.... -.-.+.++|.|| .+...+-...+..++|++|+|..+.+.-.. ...+.+......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~~---- 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSEE---- 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhcc----
Confidence 0000111100000 001467889999 345566677778889999999998753222 223344443332
Q ss_pred CCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhc--CcceEEEEEeeee
Q psy1315 125 NVPILILANKQDLPNAI--QIKQIEKLLGLYELN--NMHLYYIQATCAI 169 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 169 (202)
+..+.++.||+|..... ..+.+...+..-..+ ......+|++||+
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 45566667889986542 222332221110111 1234568888855
No 362
>KOG3859|consensus
Probab=98.71 E-value=3e-08 Score=72.46 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=77.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccc---ccceeeEeecccc-cccceEEEEEEcCCC-------CCc-----
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPT---IGFNCEKVKGQIG-KCKGINFLIWDVGGQ-------EKL----- 81 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~D~~G~-------~~~----- 81 (202)
=.++|+.+|..|.|||||+..|++..+..+..+ .++.....++... .+-..++.++||.|. ..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 468999999999999999999999888533221 2344444444441 233567899999981 111
Q ss_pred --hhhHHhhhc---------------CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH
Q psy1315 82 --RPLWKSYTR---------------CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK 144 (202)
Q Consensus 82 --~~~~~~~~~---------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 144 (202)
..+...|++ +.+++++.+.++. .++..+.-....-+.. ...+|-|+-|.|-.+.....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhHHHHH
Confidence 122333322 2589999998875 5666665444443333 56677777899876654333
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.71 E-value=4.9e-07 Score=65.90 Aligned_cols=88 Identities=18% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCCc----cccccceeeEeecccccccceEEEEEEcCCCCCc------hh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNT----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL------RP 83 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~ 83 (202)
..+..-|+|+|++++|||+|+|++++. .+... ..|.|+-....... .+....+.++||+|.... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~--~~~~~~v~~lDteG~~~~~~~~~~~~ 81 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK--LGKEHAVLLLDTEGTDGRERGEFEDD 81 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc--CCCcceEEEEecCCcCccccCchhhh
Confidence 345567899999999999999999998 55322 22233333322221 124567999999994322 22
Q ss_pred hHHhhhcC--CCEEEEEEeCCCch
Q psy1315 84 LWKSYTRC--TDGIIFVIDSTDVE 105 (202)
Q Consensus 84 ~~~~~~~~--~d~~ilv~d~~~~~ 105 (202)
.....+.. ++.+|+..+.....
T Consensus 82 ~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 82 ARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred hHHHHHHHHHhCEEEEeccCcccH
Confidence 22233333 78888888776433
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.68 E-value=9.4e-08 Score=73.75 Aligned_cols=83 Identities=22% Similarity=0.090 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC-C--Ccc-ccccceeeEeeccc------------ccccceEEEEEEcCCCC----
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY-L--NTV-PTIGFNCEKVKGQI------------GKCKGINFLIWDVGGQE---- 79 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~-~--~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~G~~---- 79 (202)
++++++|.|++|||||++.+.+... . .+. .|...+...+.++- .......+.+.|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998765 2 111 11222222222210 01122468899999933
Q ss_pred ---CchhhHHhhhcCCCEEEEEEeCC
Q psy1315 80 ---KLRPLWKSYTRCTDGIIFVIDST 102 (202)
Q Consensus 80 ---~~~~~~~~~~~~~d~~ilv~d~~ 102 (202)
.........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23446667889999999999985
No 365
>KOG1487|consensus
Probab=98.67 E-value=1.6e-07 Score=68.08 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
-++.++|-|.+|||||+..+.+... +.....+.+..++.... .++.-++++.|.||.-+ -..+.....+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~-~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVI-RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceE-eccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3899999999999999999886642 33333344444554433 56777899999999321 223444556778
Q ss_pred CEEEEEEeCCCch
Q psy1315 93 DGIIFVIDSTDVE 105 (202)
Q Consensus 93 d~~ilv~d~~~~~ 105 (202)
+++++|.|+..|-
T Consensus 138 nli~~vld~~kp~ 150 (358)
T KOG1487|consen 138 NLIFIVLDVLKPL 150 (358)
T ss_pred cEEEEEeeccCcc
Confidence 9999999987643
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=6.9e-08 Score=67.47 Aligned_cols=92 Identities=22% Similarity=0.139 Sum_probs=60.6
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.......++++|.+++|+|+.++...... .+.... .+.|+++|.||+|+.+..........+. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~------~~~~ 76 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE------SKGE 76 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH------hcCC
Confidence 34556778889999999999865432211 111211 2579999999999964322212112111 1234
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.++.+||+++.|++++.+.+.+.+.
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 6789999999999999999988763
No 367
>PRK12289 GTPase RsgA; Reviewed
Probab=98.66 E-value=7.2e-08 Score=74.49 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
.++|+|++|||||||+|+|++.....+....+ +|.....+... .. ..++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g---~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG---GLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC---cEEEeCCCcc
Confidence 38999999999999999999876544444444 44444444331 12 2688999953
No 368
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.64 E-value=7.1e-08 Score=75.12 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred CCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhc
Q psy1315 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELN 156 (202)
Q Consensus 78 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 156 (202)
.+.+..+...+...++++++|+|+.+... .|...+... ..+.|+++|+||+|+.... ....+...+.. ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~--~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKK--RA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHH--HH
Confidence 45677888888899999999999975431 122222221 1267999999999996532 33333333211 11
Q ss_pred CcceE---EEEEeeeecCCCHHHHHHHHHHH
Q psy1315 157 NMHLY---YIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 157 ~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
...++ .++.+||+++.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 12222 48899999999999999998654
No 369
>PRK12288 GTPase RsgA; Reviewed
Probab=98.63 E-value=1.4e-07 Score=72.92 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
.++|+|.+|||||||+|+|++.....+....+ +|.....+.+ ... ..++||||..++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l-~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF-PHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe-cCC---CEEEECCCCCcc
Confidence 37999999999999999999875543322221 3333333333 122 248999996554
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.62 E-value=1.8e-07 Score=70.43 Aligned_cols=94 Identities=26% Similarity=0.182 Sum_probs=63.4
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.......++.+|++++|+|+..+.+... ..+..... ++|+++|.||+|+.+..........+. ..+.
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~------~~~~ 78 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFE------EKGI 78 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHH------HcCC
Confidence 3456677888999999999976543322 12222221 579999999999964322222222221 1235
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+++.+||+++.|++++.+.+.+.+.+.
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 789999999999999999998887654
No 371
>PRK13796 GTPase YqeH; Provisional
Probab=98.59 E-value=1.4e-07 Score=73.54 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=48.5
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC-----CCCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ-----YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++...+... ....++.++|.+|||||||+|+|+... ...+++.+|+|.....+...+ . ..++||||.
T Consensus 146 gI~eL~~~I~~~-~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~---~~l~DTPGi 220 (365)
T PRK13796 146 GIDELLEAIEKY-REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-G---SFLYDTPGI 220 (365)
T ss_pred CHHHHHHHHHHh-cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-C---cEEEECCCc
Confidence 344444444322 134589999999999999999998643 123566778888887776522 2 378999995
Q ss_pred C
Q psy1315 79 E 79 (202)
Q Consensus 79 ~ 79 (202)
.
T Consensus 221 ~ 221 (365)
T PRK13796 221 I 221 (365)
T ss_pred c
Confidence 3
No 372
>KOG0464|consensus
Probab=98.58 E-value=1.1e-08 Score=78.65 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=93.2
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-------CCc----------cccccceeeEeecccccccceEE
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-------LNT----------VPTIGFNCEKVKGQIGKCKGINF 70 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 70 (202)
+.+...+...+.-+|.++.+-.+||||...++++-.. .+. ....|.+....-+.+ +.+.+.+
T Consensus 26 lhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-dwkg~ri 104 (753)
T KOG0464|consen 26 LHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-DWKGHRI 104 (753)
T ss_pred ccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec-ccccceE
Confidence 3344555667788999999999999999999865311 011 222356666655555 7888999
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+++||||+..|.-....+++--|+++.|||.+-.-.-+.+..| . +....+.|-++..||+|....
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvw-r----qadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW-R----QADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeee-h----hccccCCchhhhhhhhhhhhh
Confidence 9999999999999999999999999999999843333333323 2 223448999999999998654
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.57 E-value=2.4e-07 Score=62.62 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHhhhcCCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEE
Q psy1315 85 WKSYTRCTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162 (202)
Q Consensus 85 ~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (202)
....++++|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+..+.........+ ...+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~------~~~~~~ 73 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYF------KKEGIV 73 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHH------HhcCCe
Confidence 345678899999999998765533 333333321 1378999999999996543322222322 122357
Q ss_pred EEEeeeecCCC
Q psy1315 163 IQATCAITGDG 173 (202)
Q Consensus 163 ~~~~Sa~~~~~ 173 (202)
++++||.++.+
T Consensus 74 ii~iSa~~~~~ 84 (141)
T cd01857 74 VVFFSALKENA 84 (141)
T ss_pred EEEEEecCCCc
Confidence 89999987763
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.56 E-value=2.1e-07 Score=68.73 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccc---c----ceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTI---G----FNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
.++++|.+|+|||||+|++.+.....+.... + +|.....+.. .+ -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC----cEEEeCCCccc
Confidence 7899999999999999999976543222111 1 3444433433 21 26899999543
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.55 E-value=2.3e-07 Score=72.32 Aligned_cols=71 Identities=13% Similarity=0.302 Sum_probs=47.8
Q ss_pred chHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCC-----CCccccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
...++...+.... +..+++++|.+|||||||+|++++... ...++.+|+|.....+.. . . .+.++||||.
T Consensus 140 gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~-~--~~~l~DtPG~ 214 (360)
T TIGR03597 140 GIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-D-D--GHSLYDTPGI 214 (360)
T ss_pred CHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-C-C--CCEEEECCCC
Confidence 3445544443321 236999999999999999999997532 344566677777666644 1 1 2579999995
Q ss_pred C
Q psy1315 79 E 79 (202)
Q Consensus 79 ~ 79 (202)
.
T Consensus 215 ~ 215 (360)
T TIGR03597 215 I 215 (360)
T ss_pred C
Confidence 4
No 376
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.54 E-value=1.2e-06 Score=77.92 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCc-----ccc--ccceeeEeecccccccceEEEEEEcCCC----C----Cchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPT--IGFNCEKVKGQIGKCKGINFLIWDVGGQ----E----KLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~----~~~~~ 84 (202)
.=.+|+|++|+||||+++.- +-.++-. ..+ .+-+ ..+.+.+ .. .-.++||+|. + .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf-~~---~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWF-TD---EAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEe-cC---CEEEEcCCCccccCCCcccccHHH
Confidence 45799999999999999877 4444311 111 1111 1223322 11 3468999992 1 22334
Q ss_pred HHhhhc---------CCCEEEEEEeCCCchh---------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 WKSYTR---------CTDGIIFVIDSTDVER---------MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 ~~~~~~---------~~d~~ilv~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
|..++. -.+++|+++|+.+.-. -..++..+.++... ..-..||.||.||+|+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 555532 2799999999865311 12344455555544 344899999999999874
No 377
>KOG0465|consensus
Probab=98.51 E-value=2.3e-07 Score=74.46 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC----Ccccc-------------ccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL----NTVPT-------------IGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++.-+|.+.-+-.+||||+-++.++.... ....+ .|++....-... ..+.+.++++||||+
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~-~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF-TWRDYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee-eeccceeEEecCCCc
Confidence 456778999999999999999998754211 00111 123322211111 234678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
-+|.-.....++--|++|++++.-..-. ......|..+.++ ++|-|..+||+|-.
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRM 169 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhc
Confidence 9999888889999999999998763211 2223355555555 89999999999954
No 378
>KOG0459|consensus
Probab=98.51 E-value=5.7e-08 Score=74.38 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC----------------------------------ccccccceeeEeecc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN----------------------------------TVPTIGFNCEKVKGQ 61 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 61 (202)
.+.+++++|+|+..+||||+-..++.....- ...|.+......
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--- 152 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--- 152 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE---
Confidence 5789999999999999999987775431100 011111111111
Q ss_pred cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHHHH--HHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 62 IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RMEEV--KIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 62 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~--~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.....++++.|.||+..|-..+..-...+|..++|+++...+ .|+.- .+.-..+.. ...-...|+++||+|
T Consensus 153 --Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak--t~gv~~lVv~vNKMd 228 (501)
T KOG0459|consen 153 --ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVKHLIVLINKMD 228 (501)
T ss_pred --EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH--hhccceEEEEEEecc
Confidence 334567999999999888877777777799999999985321 22211 111111111 122467888899999
Q ss_pred CCCCcCHH--------HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 137 LPNAIQIK--------QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 137 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
-+...+.. .+..++....+.......++++|..+|.++.+...
T Consensus 229 dPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 229 DPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 86543322 34445544444445677899999999999887653
No 379
>KOG0463|consensus
Probab=98.48 E-value=5.9e-07 Score=68.56 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=88.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC-----------------CCccccc-------cceeeEeecc------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY-----------------LNTVPTI-------GFNCEKVKGQ------------ 61 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~-----------------~~~~~~~-------~~~~~~~~~~------------ 61 (202)
-+.+++++|...+|||||+-.|..... .+...|. |+...-..+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 467999999999999999866644321 1111221 1111111110
Q ss_pred -cccccceEEEEEEcCCCCCchhhHHhhh--cCCCEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 62 -IGKCKGINFLIWDVGGQEKLRPLWKSYT--RCTDGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 62 -~~~~~~~~~~~~D~~G~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
+.....-.++|+|..|+++|......-+ +-.|-..+++-+. ...-.+.. .+-..+. ..+|+.||++|+|.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaN--aGIiGmTKEHLgLALa----L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGAN--AGIIGMTKEHLGLALA----LHVPVFVVVTKIDM 285 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccc--ccceeccHHhhhhhhh----hcCcEEEEEEeecc
Confidence 0112233578999999988765432222 3367778887664 22222221 2211222 27899999999999
Q ss_pred CCCcCHHHH----HHHhCc--------------------hhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 138 PNAIQIKQI----EKLLGL--------------------YELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 138 ~~~~~~~~~----~~~~~~--------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+.....++. ...++. ..+....-+|+|.+|..+|.|++.+...+
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 765433321 111111 01112345789999999999988665543
No 380
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.48 E-value=4.6e-06 Score=64.90 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-------------Ccc--cccc----------ceeeEeecc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-------------NTV--PTIG----------FNCEKVKGQ 61 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-------------~~~--~~~~----------~~~~~~~~~ 61 (202)
.+.+..+.+....+-|+|||+..+|||||+.+|+..... +.- +..| +.-..+.+.
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~ 84 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT 84 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence 356778888999999999999999999999999653210 000 1112 222333444
Q ss_pred cccccceEEEEEEcCC-------------CCC------chh---h-------HHhhhcCCC--EEEEEEeCC--C--chh
Q psy1315 62 IGKCKGINFLIWDVGG-------------QEK------LRP---L-------WKSYTRCTD--GIIFVIDST--D--VER 106 (202)
Q Consensus 62 ~~~~~~~~~~~~D~~G-------------~~~------~~~---~-------~~~~~~~~d--~~ilv~d~~--~--~~s 106 (202)
+.++-.+++.++|+.| .++ |.. + +...++.-. ++|+--|-+ + +++
T Consensus 85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~ 164 (492)
T PF09547_consen 85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN 164 (492)
T ss_pred ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence 4455667889999987 011 110 0 111122222 333333322 1 344
Q ss_pred HHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 107 MEEV-KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+... .+.+.++... ++|+++++|-.+-.+. ....+...+ ....+.+++++++.
T Consensus 165 Y~eAEervI~ELk~i----gKPFvillNs~~P~s~-et~~L~~eL-----~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 165 YVEAEERVIEELKEI----GKPFVILLNSTKPYSE-ETQELAEEL-----EEKYDVPVLPVNCE 218 (492)
T ss_pred HHHHHHHHHHHHHHh----CCCEEEEEeCCCCCCH-HHHHHHHHH-----HHHhCCcEEEeehH
Confidence 4433 3444555444 8999999997764332 222333322 24567788888764
No 381
>KOG1424|consensus
Probab=98.45 E-value=2e-07 Score=73.43 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
++..+.|++||-|+|||||+||.|++.+...++.|+|-|...-++.+ . -.+.+.|+||
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s---~~v~LCDCPG 368 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-S---PSVCLCDCPG 368 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-C---CCceecCCCC
Confidence 44579999999999999999999999999999999998877777644 1 2467889999
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.45 E-value=1.3e-06 Score=66.15 Aligned_cols=101 Identities=25% Similarity=0.215 Sum_probs=66.0
Q ss_pred cCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch
Q psy1315 75 VGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY 153 (202)
Q Consensus 75 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (202)
.||+. +........+..+|++|+|+|+.++.+... ..+..... ++|+++|.||+|+.+......+...+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 35542 223455667788999999999976543322 12222222 589999999999964322222222221
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
..+.+++.+||+++.|++++.+.+.+.+.+.
T Consensus 78 ----~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ----EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ----HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1235688999999999999999998887654
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=98.43 E-value=2.2e-06 Score=65.84 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=76.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc----CCCC---Ccccc---------------ccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF----DQYL---NTVPT---------------IGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~----~~~~---~~~~~---------------~~~~~~~~~~~------------~~ 63 (202)
+...|+++|++|+||||++..+.. .... ....+ .++........ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999997776642 1110 00010 11211111100 00
Q ss_pred cccceEEEEEEcCCCCCchh-h---HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRP-L---WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~-~---~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|...... + ...+ ..+.|..++|.|+............+... -.+--+|.||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecC
Confidence 11235689999999543221 1 1111 12478999999986433222212222221 1234577899998
Q ss_pred CCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
...-..- -... ...+.|+.+++ +|++++++..
T Consensus 292 ~~~~G~~--ls~~------~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAA--LSIA------YVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHH--HHHH------HHHCcCEEEEe--CCCChhhccc
Confidence 6543321 1111 12356777776 7999988764
No 384
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.41 E-value=3.6e-07 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999874
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.38 E-value=9.1e-06 Score=62.23 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=76.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC------C----CCcc------------ccccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ------Y----LNTV------------PTIGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~------~----~~~~------------~~~~~~~~~~~~~------------~~ 63 (202)
+.--|+++|++|+||||++..+.+.- . .+.. ...+..+...... ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998884321 0 0000 0011111111000 00
Q ss_pred cccceEEEEEEcCCCCCchhh----HHhh--------hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEE
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WKSY--------TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv 131 (202)
....+.+.++||||....... ...+ -...+..++|.|++.. ...+.+ ....... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 124567899999995432211 1111 1236788999999742 222221 1222111 1244688
Q ss_pred eeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 132 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
.||.|....-. .+-... ...+.|+.+++ +|++++++-.
T Consensus 266 lTKlD~t~~~G--~~l~~~------~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIA------DELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCcc--HHHHHH------HHHCCCEEEEe--CCCChhhCcc
Confidence 99999554322 111111 12367888887 7888877754
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=2.8e-06 Score=66.14 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=58.5
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
...+.|.+++|++++.+-....+.+++...... +.|.++|+||+||.+... ....... .+ ..+++++.+|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~~~-~~~~~~~---~~--~~g~~Vi~vS 178 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCEDAE-EKIAEVE---AL--APGVPVLAVS 178 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCCHH-HHHHHHH---Hh--CCCCcEEEEE
Confidence 368899999999997433444445555444443 678899999999976411 1112211 11 3467899999
Q ss_pred eecCCCHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELY 182 (202)
Q Consensus 168 a~~~~~v~~l~~~l~ 182 (202)
++++.|++++.+++.
T Consensus 179 a~~g~gl~~L~~~L~ 193 (356)
T PRK01889 179 ALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999998874
No 387
>PRK00098 GTPase RsgA; Reviewed
Probab=98.35 E-value=1.7e-06 Score=65.80 Aligned_cols=57 Identities=23% Similarity=0.105 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc-------ceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------FNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
-.++++|++|+|||||+|.|.+.....+....+ +|.....+.. ... ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~-~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL-PGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc-CCC---cEEEECCCcCc
Confidence 468999999999999999999765443322221 2322222222 111 36889999643
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=1.9e-06 Score=65.20 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCcccc-------ccceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPT-------IGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
-.++++|++|+|||||+|.+++.....+... ..+|.....+.. ... ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~-~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL-PGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc-CCC---CEEEECCCCCcc
Confidence 5799999999999999999998654322111 113444433333 111 258999997554
No 389
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=7.4e-06 Score=61.42 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=54.0
Q ss_pred cceEEEEEEcCCCCCchhhHH-------hhhc-----CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEee
Q psy1315 66 KGINFLIWDVGGQEKLRPLWK-------SYTR-----CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~-------~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~n 133 (202)
..+.+.++||||......... .... .+|..++|+|++.. .+.+. +........ .+--+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 457889999999654322211 1111 38999999999732 22222 222222211 24568899
Q ss_pred CCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|.|....... +.... ...+.|+.+++ +|++++++-.
T Consensus 226 KlDe~~~~G~--~l~~~------~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGI--ILSIA------YELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccH--HHHHH------HHHCcCEEEEe--CCCChHhCcc
Confidence 9997654332 11111 11246777777 7888877654
No 390
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=5e-06 Score=57.30 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-++++|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998764
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=1.8e-06 Score=64.54 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=39.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC---Cccccc--c--ceeeEeecccccccceEEEEEEcCCCCCc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NTVPTI--G--FNCEKVKGQIGKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 81 (202)
+....+.. ..+++|++|||||||+|+|...... +.+... | +|+....++++ ... .++||||..++
T Consensus 158 l~~~l~~~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG---~iiDTPGf~~~ 229 (301)
T COG1162 158 LAELLAGK-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGG---WIIDTPGFRSL 229 (301)
T ss_pred HHHHhcCC-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCC---EEEeCCCCCcc
Confidence 33333434 7889999999999999999864322 122221 2 44445445442 222 47899996543
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.26 E-value=1.9e-05 Score=62.47 Aligned_cols=115 Identities=19% Similarity=0.123 Sum_probs=62.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh------cCCC-----CCcc-----------ccccceeeEeecccc------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK------FDQY-----LNTV-----------PTIGFNCEKVKGQIG------------ 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~------~~~~-----~~~~-----------~~~~~~~~~~~~~~~------------ 63 (202)
++--|+++|.+||||||++..|. +.+. +.+. ...++.+........
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35678999999999999998884 2211 0111 111222222111000
Q ss_pred cccceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|....... ...+ ...++.+++|.|+.....-......+.. . -.+--+|.||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccC
Confidence 113578899999995433221 1111 2347899999998643222222222221 1 2356788999997
Q ss_pred CC
Q psy1315 138 PN 139 (202)
Q Consensus 138 ~~ 139 (202)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.18 E-value=1.3e-05 Score=57.09 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC----CC--C----C------------ccccccceeeEeeccc------------ccc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD----QY--L----N------------TVPTIGFNCEKVKGQI------------GKC 65 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~----~~--~----~------------~~~~~~~~~~~~~~~~------------~~~ 65 (202)
--|+++|++||||||.+.+|-.. .. . + +....++......... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 35899999999999999887421 10 0 0 0111233333222100 012
Q ss_pred cceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+.+.++||+|....... +..+ ....+-+++|.+++... .+.......... .+-=++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~--------~~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF--------GIDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS--------STCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc--------cCceEEEEeecCC
Confidence 3467899999995433221 1111 12478999999987432 223222222111 1224668999975
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
.... .+-... ...+.|+-.+| +|++|+++
T Consensus 154 ~~~G--~~l~~~------~~~~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 154 ARLG--ALLSLA------YESGLPISYIT--TGQRVDDL 182 (196)
T ss_dssp STTH--HHHHHH------HHHTSEEEEEE--SSSSTTGE
T ss_pred CCcc--cceeHH------HHhCCCeEEEE--CCCChhcC
Confidence 5432 222211 12345666665 57777443
No 394
>KOG2484|consensus
Probab=98.10 E-value=2.5e-06 Score=65.52 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
.++.++++|+|-|++||||+||+|...+.....+++|+|..--.+.. .-.+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L----dk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL----DKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec----cCCceeccCCc
Confidence 47899999999999999999999999988888888887776655533 22478999999
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.10 E-value=3.8e-05 Score=52.29 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=36.7
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
..+.+.++||+|... ....++..+|.+|++..++-.+...-.. ..+. ..--+++.||.|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 356789999998542 2234778899999999886222222211 1222 233478889987
No 396
>KOG1534|consensus
Probab=98.09 E-value=2.9e-05 Score=54.95 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCCchh---hHHhhhcC------CCEEEEEEeCCC-chh---HHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 69 NFLIWDVGGQEKLRP---LWKSYTRC------TDGIIFVIDSTD-VER---MEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~---~~~~~~~~------~d~~ilv~d~~~-~~s---~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
.+.++|+||+-+..+ ..+.++++ .-+++++.|..= -++ +......+..+... ..|-|=|.+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 467889999754322 22222221 235566665420 012 22222333333333 78999999999
Q ss_pred CCCCCcCHHHHHHHhCchhh--------------------------cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 136 DLPNAIQIKQIEKLLGLYEL--------------------------NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 136 Dl~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
|+.......+++.++.-... ....-..|++....+.+.++.++..|-.++.
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 99877555555554422111 1122345666666667777777776655543
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=6.6e-05 Score=59.42 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=73.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC-----CCC----ccc---------------cccceeeEeecc------cccccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ-----YLN----TVP---------------TIGFNCEKVKGQ------IGKCKG 67 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~----~~~---------------~~~~~~~~~~~~------~~~~~~ 67 (202)
..-.|+++|++|+||||++..|.+.. ... ..+ ..++......-. ......
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999999775421 000 000 112222111110 012234
Q ss_pred eEEEEEEcCCCCCch----hhHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 68 INFLIWDVGGQEKLR----PLWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
..+.++||+|..... .....+. ....-.++|+|++. ....+...+..... --+-=+|.||.|.....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQG-----HGIHGCIITKVDEAASL 342 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcC-----CCCCEEEEEeeeCCCCc
Confidence 567899999954321 2222222 22456789999872 22333322222211 12334678999976542
Q ss_pred CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
.. +.... ...+.|+.+++ +|.+| +++.
T Consensus 343 G~--~l~~~------~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 343 GI--ALDAV------IRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred cH--HHHHH------HHhCCCEEEEE--CCCCchhhhh
Confidence 21 22211 12345666655 68887 4444
No 398
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=1.4e-05 Score=62.49 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=56.6
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNM 158 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 158 (202)
.+...........+.+++|+|+.+... . |...+... ..+.|+++|+||+|+.... ....+...+.. ....
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s---~~~~L~~~--~~~kpviLViNK~DLl~~~~~~~~i~~~l~~--~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG--S---WIPGLHRF--VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQ--EAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC--c---hhHHHHHH--hCCCCEEEEEEchhhCCCccCHHHHHHHHHH--HHHh
Confidence 344444444333449999999976321 1 12222221 1267999999999996532 23333332221 1111
Q ss_pred ce---EEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 159 HL---YYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 159 ~~---~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+ ..++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 22 258899999999999999998664
No 399
>PRK13695 putative NTPase; Provisional
Probab=98.07 E-value=0.00017 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 400
>KOG2485|consensus
Probab=98.03 E-value=6.9e-06 Score=61.27 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC-----CCCccccccceeeEeecccccccceEEEEEEcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ-----YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 77 (202)
...++.+.|+|-||+|||||+|++.... ...+.+..|+|......-. -.+.-.+.+.||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~ir-i~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIR-ISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheE-eccCCceEEecCCC
Confidence 4578999999999999999999986532 2456677777776655211 13344588899999
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.98 E-value=0.00012 Score=51.21 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=37.8
Q ss_pred ceEEEEEEcCCCCCchh----hHHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRP----LWKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.++|+||...... ....+ ....+.+++|++....... ..+........ + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 45678899999642211 11111 1248999999998643322 22333332221 2 35677799997654
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=4.8e-05 Score=59.40 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC----C--C----CCcc------------ccccceeeEeecc------c---cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD----Q--Y----LNTV------------PTIGFNCEKVKGQ------I---GKCK 66 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~----~--~----~~~~------------~~~~~~~~~~~~~------~---~~~~ 66 (202)
+.-.|+++|++||||||++..|... . . .+.. ...++......-. + ....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988431 1 0 0000 0111221111100 0 0111
Q ss_pred ceEEEEEEcCCCCCchh----hHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRP----LWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.++||+|...... .+...+ ...+.+++|+|++-. ...+...+..... -..-=+|.||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 35789999999543211 122222 235788999987521 2222222222211 1233577899997654
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
... +-... ...+.|+.+++ +|++|.+=+.
T Consensus 393 ~G~--iLni~------~~~~lPIsyit--~GQ~VPeDI~ 421 (436)
T PRK11889 393 SGE--LLKIP------AVSSAPIVLMT--DGQDVKKNIH 421 (436)
T ss_pred ccH--HHHHH------HHHCcCEEEEe--CCCCCCcchh
Confidence 322 11111 12345665555 5777665443
No 403
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=5.1e-05 Score=59.15 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=63.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC---CC------Ccccc---------------ccceeeEeecc------ccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ---YL------NTVPT---------------IGFNCEKVKGQ------IGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~---~~------~~~~~---------------~~~~~~~~~~~------~~~~~ 66 (202)
.+.-.++++|++|+||||++.+|...- .. .+..+ .++........ .....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345688999999999999999986421 00 00011 12222211110 01224
Q ss_pred ceEEEEEEcCCCCCchhh----HHhh--hcCCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCC-CCcEEEEeeCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL----WKSY--TRCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNF-NVPILILANKQDLP 138 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK~Dl~ 138 (202)
...+.++||+|....... .... .....-.++|++++. .+.+......+.......... .-+-=+|.||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 557899999995532221 1111 122456689999874 334444443343332110000 01234678999976
Q ss_pred CC
Q psy1315 139 NA 140 (202)
Q Consensus 139 ~~ 140 (202)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 54
No 404
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.92 E-value=9.1e-05 Score=52.09 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCCCCchhh------HHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL------WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.....++++.|......+ ... .-..+.+|.|+|+.+-.........+...+.. .-++|+||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCCh
Confidence 345677888885443333 111 12368999999996643333333444444433 34788999999776
Q ss_pred cC-HHHHHHHh
Q psy1315 141 IQ-IKQIEKLL 150 (202)
Q Consensus 141 ~~-~~~~~~~~ 150 (202)
.. .....+.+
T Consensus 157 ~~~i~~~~~~i 167 (178)
T PF02492_consen 157 EQKIERVREMI 167 (178)
T ss_dssp H--HHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 53 24444433
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.91 E-value=2e-05 Score=43.75 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCEEEEEEeCCCchhH--HHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 92 TDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.+++++++|++..+.+ +.....+.++... ..++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 6899999999986654 4444444454443 44899999999998
No 406
>KOG2423|consensus
Probab=97.90 E-value=1.3e-05 Score=61.77 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCc--hhhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL--RPLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~~~~~~ 92 (202)
..++.+.|+|+|-|++||||++|.|...+...+.|..|-|--=-.+ .-...+-++|+||...- .+.....+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI----tLmkrIfLIDcPGvVyps~dset~ivL--- 375 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI----TLMKRIFLIDCPGVVYPSSDSETDIVL--- 375 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH----HHHhceeEecCCCccCCCCCchHHHHh---
Confidence 3567999999999999999999999999988888888754321111 12235778899993321 23333333
Q ss_pred CEEEEEEeCCCchh
Q psy1315 93 DGIIFVIDSTDVER 106 (202)
Q Consensus 93 d~~ilv~d~~~~~s 106 (202)
-++|-|-.+.+++.
T Consensus 376 kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 KGVVRVENVKNPED 389 (572)
T ss_pred hceeeeeecCCHHH
Confidence 35566667776543
No 407
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.89 E-value=0.00014 Score=45.36 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-HHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-WKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~~ilv~d 100 (202)
+++.|.+|+||||+...+...-.. .+... ... + .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v--~~~---~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV--LLI---D----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE--EEE---C----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999888644211 11111 111 1 5788999986433221 2456677899999998
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcEEEEee
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPILILAN 133 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~n 133 (202)
.+. .+....................+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 874 33444333322222221223455555544
No 408
>KOG0469|consensus
Probab=97.87 E-value=8e-05 Score=59.28 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=79.8
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------CCCc---cccccceeeEe--ec--cc--------
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------YLNT---VPTIGFNCEKV--KG--QI-------- 62 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~~~~---~~~~~~~~~~~--~~--~~-------- 62 (202)
+.+..+..+.-++.++.+...|||||...|...- |.++ ....++|...- .. .+
T Consensus 10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred HHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 3455566778889999999999999999986431 1111 01112222221 11 11
Q ss_pred ---ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 63 ---GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 63 ---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+++..-++++|.||+..|++.....++-.|+.+.|+|.-+.-..+... .+.+.+.. .+.-+++.||.|.
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh----hccceEEeehhhH
Confidence 1445667899999999999999999999999999999986543333322 22222222 4455677899995
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=5.3e-05 Score=58.96 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC-CCcccc-----------------------ccceeeEeeccc------ccccce
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPT-----------------------IGFNCEKVKGQI------GKCKGI 68 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~-----------------------~~~~~~~~~~~~------~~~~~~ 68 (202)
.=-|++||+.||||||-+..|-..-. ...... .++....+.-+. .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66799999999999998877743211 011111 122222221110 123456
Q ss_pred EEEEEEcCCCCCc----hhhHHhhhcC--CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 69 NFLIWDVGGQEKL----RPLWKSYTRC--TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 69 ~~~~~D~~G~~~~----~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.++||.|.... ...+..++.. ..-.-+|++++. ....+...+...... +. -=++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i-~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PI-DGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----Cc-ceeEEEcccccCc
Confidence 7899999995432 2334444433 345566677752 234444333332221 11 2366899997543
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.00011 Score=52.99 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.8
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
...+++|.+|.|+|.+- .++.... .+.++..... -.++.+|+||.|..
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHhC--CceEEEEEeeccch
Confidence 44566899999999974 4555544 3444444321 38999999999855
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00014 Score=58.92 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=71.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--------CCC-Cccc---------------cccceeeEeecc------ccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--------QYL-NTVP---------------TIGFNCEKVKGQ------IGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--------~~~-~~~~---------------~~~~~~~~~~~~------~~~~~ 66 (202)
...-.|+|+|++|+||||++..|... +.. .... ..++.+...... +....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568999999999999999888531 110 0000 111111111100 01123
Q ss_pred ceEEEEEEcCCCCCchhh----HH--hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPL----WK--SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.+.|+||+|....... .. .... ....++|++... +...+...+..+.. ..+.-+|.||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 567899999995432211 11 1111 345677777762 34443333333222 2356789999997543
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
. -.+...+ ...+.|+.+++ +|.+|
T Consensus 500 l--G~aLsv~------~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 F--GSALSVV------VDHQMPITWVT--DGQRV 523 (559)
T ss_pred h--hHHHHHH------HHhCCCEEEEe--CCCCc
Confidence 2 2222221 12345666665 57777
No 412
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.84 E-value=0.00054 Score=52.56 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=57.5
Q ss_pred eEEEEEEcCCCCCchhhHHhhhc--------CCCEEEEEEeCCCchhHHH-HHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTR--------CTDGIIFVIDSTDVERMEE-VKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
....++++.|-..-......+.. .-|++|-|+|+.+-..... ........+. ..-++|+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence 55677888885544343333332 1488999999965332222 2222222222 2457899999999
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
+......++..+.. -.+..+++.++. .+....+++
T Consensus 159 ~~~~l~~l~~~l~~----lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEELEALEARLRK----LNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHHHHHHHHHHHH----hCCCCeEEEccc-cCCCHHHhh
Confidence 87655555554421 245677888776 444444443
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00014 Score=61.39 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC---------Ccccc---------------ccceeeEeecc------cccccceE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL---------NTVPT---------------IGFNCEKVKGQ------IGKCKGIN 69 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~---------~~~~~---------------~~~~~~~~~~~------~~~~~~~~ 69 (202)
--|+|+|+.|+||||++..|.+.... ....+ .++......-. +.....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999988642100 00001 11111110000 01123456
Q ss_pred EEEEEcCCCCCc----hhhHHhh--hcCCCEEEEEEeCCC-chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC
Q psy1315 70 FLIWDVGGQEKL----RPLWKSY--TRCTDGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ 142 (202)
Q Consensus 70 ~~~~D~~G~~~~----~~~~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 142 (202)
+.++||+|.... ....... ....+-.++|.|.+. .+.+..+...+...... -+-=+|.||.|....-.
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~~G 340 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATHLG 340 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCCcc
Confidence 899999993321 1111121 223567899999873 23344444333322110 13357789999765432
Q ss_pred HHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 143 IKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
. +-... ...+.|+.+++ +|++| +++.
T Consensus 341 ~--iL~i~------~~~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 341 P--ALDTV------IRHRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred H--HHHHH------HHHCCCeEEEe--cCCCChhhcc
Confidence 1 11111 12355666665 68888 5554
No 414
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.83 E-value=2.8e-05 Score=54.05 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
||.+.|++|+|||||+++++..-.....+..|+.+....- ++..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~---~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRE---NGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEET---TSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccC---CCceEEEEEEEC
Confidence 6899999999999999998754321122333444433332 344455566665
No 415
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=8.7e-05 Score=65.23 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCC--c-----cccccceeeEeecccccccceEEEEEEcCCC--------CCchhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLN--T-----VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ--------EKLRPL 84 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~ 84 (202)
+=.+|||++|+||||++.. .+..|+- . ....| +..+...+ .-.-.++||.|. +.-...
T Consensus 126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf----~deaVlIDtaGry~~q~s~~~~~~~~ 198 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG--TRNCDWWF----TDEAVLIDTAGRYITQDSADEVDRAE 198 (1188)
T ss_pred CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC--CcccCccc----ccceEEEcCCcceecccCcchhhHHH
Confidence 3468999999999998753 3333321 1 11112 22222333 113568899982 123345
Q ss_pred HHhhh---------cCCCEEEEEEeCCCchh---------HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 85 WKSYT---------RCTDGIIFVIDSTDVER---------MEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 85 ~~~~~---------~~~d~~ilv~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
|..++ +-.++||+.+|+.+.-. ...++..+.++... ..-..||+|++||.|+..
T Consensus 199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 55441 33699999999865211 12233344444443 344899999999999865
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.79 E-value=0.00031 Score=44.93 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred EEEEcC-CCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGL-DSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~-~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+++|. .|+||||+...|...-.... |...--+.... .....+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~--~~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDL--QFGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCC--CCCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 455555 68999998777643211110 11111111111 1112688999998643 334456788999999998
Q ss_pred CCCchhHHHHHHHHHHHHccCCCC-CCcEEEEeeC
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNF-NVPILILANK 134 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~-~~pvivv~nK 134 (202)
.+. .++.........+... ... ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 764 5566655555544443 222 4466677775
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.79 E-value=0.00015 Score=54.51 Aligned_cols=94 Identities=22% Similarity=0.167 Sum_probs=63.1
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhH-HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERM-EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.+...-..+.|-+++++++.+|+-- .-+.+++...... ++..++|+||+|+.+...... +... ......++
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~----gi~pvIvlnK~DL~~~~~~~~-~~~~---~~y~~~gy 142 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG----GIEPVIVLNKIDLLDDEEAAV-KELL---REYEDIGY 142 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc----CCcEEEEEEccccCcchHHHH-HHHH---HHHHhCCe
Confidence 3344444557888888888776543 3444444444333 777888899999988765553 2211 11134689
Q ss_pred EEEEeeeecCCCHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
+++.+|+++++|+.++.+.+...
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcCC
Confidence 99999999999999999887653
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.77 E-value=0.00022 Score=45.32 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=49.8
Q ss_pred EEEEcC-CCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 22 IVMLGL-DSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 22 i~v~G~-~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
|+|.|. .|+||||+...+...-.. .+...-.+.. + ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~---d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDL---D-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeC---C-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 567774 699999988776532211 1212222222 1 115688999998643 333367777999999998
Q ss_pred CCCchhHHHHHHHHH
Q psy1315 101 STDVERMEEVKIELI 115 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~ 115 (202)
.+. .++....+.+.
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 864 45555554443
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.74 E-value=0.00031 Score=47.28 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=59.9
Q ss_pred EEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 24 MLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 24 v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.-|.+|+|||++...+...-......+.-+..+. .. ..-.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~-~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GL-ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CC-CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 3456899999987766432110001111111111 00 0111678999999743 3444577888999999999863
Q ss_pred chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 104 VERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.++......+..+... ....++.+|.|+++.
T Consensus 79 -~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 4454444444333332 235678899999974
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00013 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45568999999999999998885
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00021 Score=56.99 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=50.0
Q ss_pred ceEEEEEEcCCCCCch----hhHHhhhc---CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLR----PLWKSYTR---CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++||+|..... .....++. ...-..+|++.+- ....+...+...... + +--+|.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 4678999999954332 22333333 3456788888863 223333222222111 1 2357899999754
Q ss_pred CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
... .+...+ ...+.|+.+++ +|.+| +++.
T Consensus 372 ~~G--~i~~~~------~~~~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 372 SLG--SILSLL------IESGLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred ccc--HHHHHH------HHHCCCEEEEe--CCCCChhhhh
Confidence 322 222221 12355666665 68886 4444
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00033 Score=56.47 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|+.|+||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999998864
No 423
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=4.3e-05 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...-+++.|++|+|||||++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998765
No 424
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.66 E-value=0.00057 Score=52.50 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcC--------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRC--------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~--------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
....++++.|...-......+... .+.+|.|+|+.+-.....-.......+ ...-+||+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GYADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------HhCCEEEEeccccCC
Confidence 445778999976555554444221 488999999964221111011111111 223478899999986
Q ss_pred C
Q psy1315 140 A 140 (202)
Q Consensus 140 ~ 140 (202)
+
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.65 E-value=4.5e-05 Score=49.92 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 426
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.65 E-value=0.00023 Score=56.86 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.++..|+++|.+|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 356789999999999999998874
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.64 E-value=4.5e-05 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+|+|++|||||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=5.3e-05 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 429
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.60 E-value=0.00048 Score=51.89 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC--------------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------------- 79 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------------- 79 (202)
+....-..++++|++|.|||+++++|.....+...+ +...+.+..+.+|..+
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~--------------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE--------------DAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC--------------CCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345566889999999999999999998754321111 1112234444554321
Q ss_pred ----------CchhhHHhhhcCCCEEEEEEeCC-Cc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeC
Q psy1315 80 ----------KLRPLWKSYTRCTDGIIFVIDST-DV--ERMEEVKIELIKTIKNNDNFNVPILILANK 134 (202)
Q Consensus 80 ----------~~~~~~~~~~~~~d~~ilv~d~~-~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK 134 (202)
.........++....=++++|=- +. .+.......+..+..-.+.-.+|+|.||++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12223345567778888999832 21 122222222222222223448999999986
No 430
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.59 E-value=0.00056 Score=45.45 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.+.+.+.....--|++.|+.|+|||||++.+...-
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455566655666679999999999999999998653
No 431
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=6e-05 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|.+|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 432
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.58 E-value=0.00041 Score=55.29 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=18.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l 39 (202)
++.-++++|.+|+||||++..|
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3568999999999999996655
No 433
>KOG4273|consensus
Probab=97.57 E-value=0.00079 Score=49.10 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCC--CHHHHHHHhhcCCCCCc-cccccceeeEeecccc-cccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 19 SVHIVMLGLDSA--GKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 19 ~~~i~v~G~~~~--GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
...++|+|..|+ ||-+|+.+|....+... .....+.+...++.-. -...+.+.+.-... +.+.. ......-.-+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lp-n~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLP-NAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccC-Ccccccceee
Confidence 567899999998 99999999987776422 2222222222222110 01112222221111 11111 1122233579
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
++++||++....+..+..|+...--. ... -.++++||.|..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin--sfd-illcignkvdrv 122 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN--SFD-ILLCIGNKVDRV 122 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc--cch-hheecccccccc
Confidence 99999999988899888887643211 112 346678999964
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00037 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..-++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998863
No 435
>PRK10867 signal recognition particle protein; Provisional
Probab=97.55 E-value=0.00036 Score=55.66 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=18.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l 39 (202)
.+.-|+++|.+|+||||++..|
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4577899999999999966555
No 436
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.00049 Score=51.52 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC----C-----C--C-----------ccccccceeeEeecc---------cccccc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ----Y-----L--N-----------TVPTIGFNCEKVKGQ---------IGKCKG 67 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~----~-----~--~-----------~~~~~~~~~~~~~~~---------~~~~~~ 67 (202)
.-+++++|++|+||||++..+...- . . . +....++......-. ......
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999998775321 0 0 0 001112221111000 001124
Q ss_pred eEEEEEEcCCCCCchh----hHHhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 68 INFLIWDVGGQEKLRP----LWKSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
+.+.++||+|...... .+..++ ...+-.++|.|++. ....+..+...... -.+-=+|.||.|.....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD-----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC-----CCCCEEEEEeecCCCCc
Confidence 6789999999553211 122222 23577899999862 22232222222211 22345778999976543
Q ss_pred CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.. +-... ...+.|+.+++ +|+++.+=+
T Consensus 228 G~--~l~~~------~~~~~Pi~~it--~Gq~vp~di 254 (270)
T PRK06731 228 GE--LLKIP------AVSSAPIVLMT--DGQDVKKNI 254 (270)
T ss_pred cH--HHHHH------HHHCcCEEEEe--CCCCCCcch
Confidence 31 11111 12345666655 577766444
No 437
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.54 E-value=0.00013 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..=|+++|++|||||||+++|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999865
No 438
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.52 E-value=7.6e-05 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999744
No 439
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.49 E-value=0.00012 Score=51.82 Aligned_cols=38 Identities=26% Similarity=0.126 Sum_probs=28.1
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+...-+.......-.++++|++|+|||||++.+.+.
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33444444444555678999999999999999998864
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.00013 Score=41.48 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
..+|.|+.|+|||||+.++...-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999999999999998865443
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.47 E-value=7.2e-05 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00012 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
No 443
>KOG0780|consensus
Probab=97.46 E-value=0.00019 Score=55.35 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=56.8
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcC--------------CCCC--------ccccccceeeEe-----eccc----
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFD--------------QYLN--------TVPTIGFNCEKV-----KGQI---- 62 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~--------------~~~~--------~~~~~~~~~~~~-----~~~~---- 62 (202)
+...++--|.++|-.|+||||.+-.|... .|.. .....++.++.- ...+
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG 175 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence 34556677899999999999988777421 1100 000011111111 0000
Q ss_pred ---ccccceEEEEEEcCCCCCc-hhhHHh-----hhcCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 63 ---GKCKGINFLIWDVGGQEKL-RPLWKS-----YTRCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 63 ---~~~~~~~~~~~D~~G~~~~-~~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
-..+.+.+.|+||.|...- .++... -.-+.|.+|+|.|++-....+.....+..
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 1345678999999994321 122111 12348999999999865554444444433
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.46 E-value=0.00022 Score=47.90 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 445
>KOG0446|consensus
Probab=97.45 E-value=7.1e-05 Score=62.52 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=59.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccc------------------------------------------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTI------------------------------------------ 51 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~------------------------------------------ 51 (202)
...-....|+|+|+.++||||.++.+.+..|.+-+..+
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 44567889999999999999999999886542111000
Q ss_pred ------------cceeeEeecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 52 ------------GFNCEKVKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 52 ------------~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
|+.-..+...+.......++++|.||.. ...++...|+...+.+|+.+...+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 0000111122212334568899999922 355688899999999999998755
No 446
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.44 E-value=0.00032 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++.+-+.......-.|+|.|++||||||+++.++..
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhh
Confidence 344445555667889999999999999999999854
No 447
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00085 Score=52.85 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC----------CCC----Cc------------cccccceeeEeecc------cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD----------QYL----NT------------VPTIGFNCEKVKGQ------IGKC 65 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~----------~~~----~~------------~~~~~~~~~~~~~~------~~~~ 65 (202)
..-.|+++|++|+||||.+..+... ... ++ ....++........ ....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3467999999999999999887531 000 00 01112222211110 0122
Q ss_pred cceEEEEEEcCCCCCch----hhHHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLR----PLWKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~----~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
..+.+.++||+|..... .....++.. ..-.++|.|++.. ...+...+..... --+-=+|.||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 45678999999944321 122223332 2368899999743 3333333333221 12345778999975
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCH-HHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGL-HEGI 178 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~l~ 178 (202)
..-.. +-... ...+.|+.+++ +|++| +++.
T Consensus 326 ~~~G~--~l~~~------~~~~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 326 TCVGN--LISLI------YEMRKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred CcchH--HHHHH------HHHCCCEEEEe--CCCCChhhhh
Confidence 44221 11111 12345555555 58888 4444
No 448
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00028 Score=50.82 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+..-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456677889999999999999999754
No 449
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.41 E-value=0.0016 Score=50.54 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCCchhhHHhhh-------cCCCEEEEEEeCCCchh--H-------H-------------HHHHHHHHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYT-------RCTDGIIFVIDSTDVER--M-------E-------------EVKIELIKTI 118 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~-------~~~d~~ilv~d~~~~~s--~-------~-------------~~~~~~~~~~ 118 (202)
....++++.|......+...+. -.-|++|.|+|+.+-.. + . .+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999665555444431 12588999999864211 0 0 0111112222
Q ss_pred ccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 119 ~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
...-+||+||+|+.+......+.+.+.. . .....++++++ ........++.
T Consensus 173 ------~~AD~IvlnK~Dl~~~~~l~~~~~~l~~--~-~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ------ACADLVILNKADLLDAAGLARVRAEIAA--E-LPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred ------HhCCEEEEeccccCCHHHHHHHHHHHHH--h-CCCCCEEEEcc-cCCCCHHHHhC
Confidence 2345788999999887666665555421 1 11123455543 23344555544
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00013 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-|+++|++|||||||++.+.+-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358999999999999999887643
No 451
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.41 E-value=0.00089 Score=44.77 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
....+++.|++|+|||+|++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 452
>PLN02674 adenylate kinase
Probab=97.40 E-value=0.00025 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++++..+...+...+|+++|+|||||+|+..++..
T Consensus 19 ~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 19 ELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred HHHHHHhhccccCceEEEECCCCCCHHHHHHHHHH
Confidence 34555544455578999999999999999998864
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.39 E-value=0.00016 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4478999999999999999888764
No 454
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00015 Score=51.78 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..+.=.++++|++|||||||++.+-+-.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3445578999999999999999886544
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.00021 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 456
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.31 E-value=0.00019 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=-++++|++|||||||++.+-+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468999999999999999886543
No 457
>PRK10646 ADP-binding protein; Provisional
Probab=97.29 E-value=0.0027 Score=43.20 Aligned_cols=37 Identities=19% Similarity=0.067 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.+.++...+..--|++-|+-|+|||||++.+...-
T Consensus 16 ~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 16 DLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3455555555555679999999999999999997653
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00026 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||++++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987654
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.28 E-value=0.00023 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
No 460
>PRK03839 putative kinase; Provisional
Probab=97.27 E-value=0.00025 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+++|.|||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 461
>PRK14530 adenylate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=51.46 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998853
No 462
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.0018 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~ 43 (202)
|+|+|++||||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887653
No 463
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00027 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~ 43 (202)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.00095 Score=52.48 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc----CCC-------CCcccc-----------ccceeeEeeccc-----------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF----DQY-------LNTVPT-----------IGFNCEKVKGQI----------- 62 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~----~~~-------~~~~~~-----------~~~~~~~~~~~~----------- 62 (202)
.+++..|.++|-.|+||||.+-.|-. ... +.+.|. .++.++......
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 44577899999999999998877632 110 011111 122222211000
Q ss_pred -ccccceEEEEEEcCCCCCchhhHH------hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 63 -GKCKGINFLIWDVGGQEKLRPLWK------SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 63 -~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
-....+.+.|+||+|........- .-.-++|-+++|+|+.-...-.+....+.+.+.. -=||+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 022345789999999543322111 1234589999999997554444434333333222 12556888
Q ss_pred CC
Q psy1315 136 DL 137 (202)
Q Consensus 136 Dl 137 (202)
|-
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 74
No 465
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.23 E-value=0.00032 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++..-|+++|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999753
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.23 E-value=0.00031 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|++|||||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
No 467
>KOG1533|consensus
Probab=97.23 E-value=0.0012 Score=47.81 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=37.4
Q ss_pred cceEEEEEEcCCCCCchh------hHHhhhcCCCEEE---EEEeC---CCchhHHHHH-HHHHHHHccCCCCCCcEEEEe
Q psy1315 66 KGINFLIWDVGGQEKLRP------LWKSYTRCTDGII---FVIDS---TDVERMEEVK-IELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~------~~~~~~~~~d~~i---lv~d~---~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~ 132 (202)
......++|+|||-++-. .....+++.+.=+ -.+|. ++|..|-... .-+..++.- ..|-|=|.
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m----elphVNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM----ELPHVNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh----cccchhhh
Confidence 345678899999754321 1222233344433 34442 3455554322 222333332 67888889
Q ss_pred eCCCCCC
Q psy1315 133 NKQDLPN 139 (202)
Q Consensus 133 nK~Dl~~ 139 (202)
.|+|+..
T Consensus 171 SK~Dl~~ 177 (290)
T KOG1533|consen 171 SKADLLK 177 (290)
T ss_pred hHhHHHH
Confidence 9999854
No 468
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.23 E-value=0.00028 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+++|++|||||||.++|+..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 469
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.23 E-value=0.00056 Score=50.14 Aligned_cols=33 Identities=27% Similarity=0.157 Sum_probs=26.7
Q ss_pred HhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+......+.+-|++.|++|+|||||++.+.+..
T Consensus 25 ~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 25 ALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 333445678999999999999999999987653
No 470
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00031 Score=51.48 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+..++++|+|++|||||+|+..++...
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999988653
No 471
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.22 E-value=0.00036 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+..++|+|+|+|||||||+.+.|..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 472
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.21 E-value=0.00034 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|++.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998754
No 473
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.21 E-value=0.00058 Score=49.33 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.1
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+......+..-++++.|+||+|||||.+-+.+..
T Consensus 41 ~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 41 RAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp HHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 3334455667799999999999999999876543
No 474
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0007 Score=51.70 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=25.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
........+|++.|..|||||||+|.|..--
T Consensus 167 ~~av~~r~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 167 RRAVGIRCNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred HHHHhhceeEEEeCCCCCCHHHHHHHHHhcC
Confidence 3334445899999999999999999998653
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.19 E-value=0.00035 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999876
No 476
>PRK14532 adenylate kinase; Provisional
Probab=97.19 E-value=0.00034 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|+++|+|||||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.18 E-value=0.00031 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.17 E-value=0.00033 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998664
No 479
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.0004 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+-|++.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467888999999999999999754
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=97.17 E-value=0.00043 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.-+++++|.+|+|||||++.+.+...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 45899999999999999999987543
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.16 E-value=0.00033 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 482
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.16 E-value=0.00035 Score=51.59 Aligned_cols=28 Identities=29% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++.=-++++|+.|||||||++.+.+-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3444556899999999999999999763
No 483
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.15 E-value=0.00041 Score=53.28 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.......-+|++.|++|+|||||++.+...
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3333445678999999999999999999864
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00038 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.14 E-value=0.00038 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|.|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 486
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.14 E-value=0.0004 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....+|+|.|++|||||||++.|+..
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 487
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.13 E-value=0.00042 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988644
No 488
>PRK13949 shikimate kinase; Provisional
Probab=97.13 E-value=0.00043 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 489
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.12 E-value=0.00064 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-|+++|++||||+||++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998763
No 490
>PRK14531 adenylate kinase; Provisional
Probab=97.11 E-value=0.00047 Score=48.71 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 491
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.10 E-value=0.0018 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++|.|++|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 492
>PRK07667 uridine kinase; Provisional
Probab=97.10 E-value=0.001 Score=47.43 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.9
Q ss_pred hHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++...+.......+-|++-|.+|||||||.+.|...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666666667789999999999999999988653
No 493
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.10 E-value=0.0088 Score=41.74 Aligned_cols=66 Identities=6% Similarity=-0.059 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 69 ~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
.+.++|+|+.... .....+..+|.+|++.+.+. .++......+..+... ......+|.|+.|....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 6889999975432 34455678999999998864 4455554444433332 13356788999986543
No 494
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.09 E-value=0.00082 Score=44.04 Aligned_cols=35 Identities=26% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.+....+..--|++-|+-|+|||||++.+...-
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 33444444556679999999999999999997543
No 495
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.07 E-value=0.00051 Score=48.21 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345579999999999999999988764
No 496
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.07 E-value=0.0025 Score=44.57 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK 148 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 148 (202)
|++++|+|+.++.+-.. ..+...... ...++|+++|+||+|+.+......+..
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l-~~~~kp~IlVlNK~DL~~~~~l~~~~~ 53 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQ-AGGNKKLVLVLNKIDLVPKENVEKWLK 53 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHh-ccCCCCEEEEEehhhcCCHHHHHHHHH
Confidence 78999999987532211 112222110 122689999999999976544333333
No 497
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0025 Score=48.53 Aligned_cols=143 Identities=18% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC----CCC------C---------------------cccccc-----ceeeEee
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD----QYL------N---------------------TVPTIG-----FNCEKVK 59 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~----~~~------~---------------------~~~~~~-----~~~~~~~ 59 (202)
..+++-|+|+|-.|+||||-+..|... .+. + ..+..| +-++.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 346889999999999999988777321 100 0 000011 2222222
Q ss_pred cccccccceEEEEEEcCCCCCchhh-------HHhhhcCC-----CEEEEEEeCCCc-hhHHHHHHHHHHHHccCCCCCC
Q psy1315 60 GQIGKCKGINFLIWDVGGQEKLRPL-------WKSYTRCT-----DGIIFVIDSTDV-ERMEEVKIELIKTIKNNDNFNV 126 (202)
Q Consensus 60 ~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~~~~~~-----d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~ 126 (202)
.- ....+.+.++||+|.-..... ....+... +-++++.|++-. +.+.... .+......
T Consensus 216 ~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~l------ 286 (340)
T COG0552 216 AA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVGL------ 286 (340)
T ss_pred HH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcCC------
Confidence 21 235577999999994332222 12222333 448888898744 3444433 44444332
Q ss_pred cEEEEeeCCCCCCCcCH-HHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 127 PILILANKQDLPNAIQI-KQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 127 pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
-=+++||+|-...-.. -.+. ...+.|+.++- -|+++++|..
T Consensus 287 -~GiIlTKlDgtAKGG~il~I~---------~~l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 287 -DGIILTKLDGTAKGGIILSIA---------YELGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred -ceEEEEecccCCCcceeeeHH---------HHhCCCEEEEe--CCCChhhccc
Confidence 2367899993221110 0111 22355666655 3777887764
No 498
>PRK00625 shikimate kinase; Provisional
Probab=97.06 E-value=0.00056 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+|+++|.+||||||+.+.+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 499
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.06 E-value=0.00044 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|++.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 500
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.06 E-value=0.00056 Score=49.66 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
....=.++++|+.|+|||||++.+.+-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3445578999999999999999998764
Done!