Query psy1315
Match_columns 202
No_of_seqs 138 out of 1737
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 20:51:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.5E-38 8.5E-43 227.8 14.1 165 16-188 10-177 (216)
2 1moz_A ARL1, ADP-ribosylation 100.0 2.7E-35 9.1E-40 207.2 18.8 182 1-189 1-182 (183)
3 1fzq_A ADP-ribosylation factor 100.0 3.7E-35 1.3E-39 206.4 19.0 175 8-188 5-179 (181)
4 1zj6_A ADP-ribosylation factor 100.0 4.5E-35 1.6E-39 206.9 19.1 180 1-189 1-180 (187)
5 2x77_A ADP-ribosylation factor 100.0 3.1E-35 1E-39 208.1 17.8 183 1-189 3-186 (189)
6 1ksh_A ARF-like protein 2; sma 100.0 1.4E-34 4.9E-39 204.1 19.1 179 1-188 3-181 (186)
7 1upt_A ARL1, ADP-ribosylation 100.0 5.5E-34 1.9E-38 198.2 20.0 166 16-187 4-169 (171)
8 1r8s_A ADP-ribosylation factor 100.0 4E-34 1.4E-38 197.7 19.1 163 20-188 1-163 (164)
9 4bas_A ADP-ribosylation factor 100.0 2.2E-34 7.5E-39 205.1 18.0 175 13-192 11-194 (199)
10 1m2o_B GTP-binding protein SAR 100.0 7.8E-34 2.7E-38 201.1 18.0 163 17-184 21-189 (190)
11 2nzj_A GTP-binding protein REM 100.0 4.6E-34 1.6E-38 199.3 16.2 167 17-190 2-172 (175)
12 3q72_A GTP-binding protein RAD 100.0 3.6E-34 1.2E-38 198.3 15.5 163 18-188 1-165 (166)
13 2h17_A ADP-ribosylation factor 100.0 7.3E-34 2.5E-38 199.7 17.0 169 10-184 12-180 (181)
14 2b6h_A ADP-ribosylation factor 100.0 1.2E-33 3.9E-38 200.6 17.4 165 16-186 26-190 (192)
15 4dsu_A GTPase KRAS, isoform 2B 100.0 1.2E-33 4.2E-38 199.5 17.4 175 17-199 2-178 (189)
16 1f6b_A SAR1; gtpases, N-termin 100.0 1.6E-33 5.5E-38 200.8 17.5 163 17-184 23-196 (198)
17 3kkq_A RAS-related protein M-R 100.0 6.7E-34 2.3E-38 200.1 15.3 170 10-187 9-182 (183)
18 1zd9_A ADP-ribosylation factor 100.0 2.6E-33 9E-38 198.0 18.1 168 15-188 18-186 (188)
19 3tkl_A RAS-related protein RAB 100.0 3.5E-33 1.2E-37 198.4 16.5 172 12-191 9-183 (196)
20 2h57_A ADP-ribosylation factor 100.0 1.5E-32 5.2E-37 194.4 19.3 167 15-187 17-187 (190)
21 2ew1_A RAS-related protein RAB 100.0 2.2E-33 7.5E-38 200.5 15.0 169 13-189 20-191 (201)
22 2fu5_C RAS-related protein RAB 100.0 9.4E-34 3.2E-38 199.3 12.8 169 15-191 4-175 (183)
23 2bcg_Y Protein YP2, GTP-bindin 100.0 5E-33 1.7E-37 199.2 16.6 171 15-193 4-177 (206)
24 2bme_A RAB4A, RAS-related prot 100.0 3.1E-33 1.1E-37 197.1 15.2 171 12-190 3-176 (186)
25 2oil_A CATX-8, RAS-related pro 100.0 6.7E-33 2.3E-37 196.6 16.9 172 10-189 16-190 (193)
26 3tw8_B RAS-related protein RAB 100.0 3.2E-33 1.1E-37 196.0 15.1 170 13-191 3-175 (181)
27 2hup_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 199.7 15.1 169 13-189 23-195 (201)
28 2g6b_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 196.0 14.8 170 14-191 5-178 (180)
29 3t5g_A GTP-binding protein RHE 100.0 2E-33 6.7E-38 197.3 13.1 168 17-192 4-174 (181)
30 2bov_A RAla, RAS-related prote 100.0 1.4E-32 4.8E-37 196.7 17.6 168 15-190 10-180 (206)
31 1z0f_A RAB14, member RAS oncog 100.0 5.2E-33 1.8E-37 194.6 14.9 166 14-187 10-178 (179)
32 3cbq_A GTP-binding protein REM 100.0 4.6E-33 1.6E-37 198.0 14.6 172 12-190 16-191 (195)
33 3t1o_A Gliding protein MGLA; G 100.0 1.5E-32 5.1E-37 195.2 17.2 168 15-190 10-195 (198)
34 3bc1_A RAS-related protein RAB 100.0 1.5E-32 5.2E-37 194.6 16.9 171 13-190 5-188 (195)
35 2a5j_A RAS-related protein RAB 100.0 6.4E-33 2.2E-37 196.5 14.8 168 15-190 17-187 (191)
36 2fn4_A P23, RAS-related protei 100.0 7.1E-33 2.4E-37 194.2 14.8 169 14-190 4-175 (181)
37 3oes_A GTPase rhebl1; small GT 100.0 3.7E-33 1.3E-37 199.3 13.4 168 16-191 21-191 (201)
38 1zbd_A Rabphilin-3A; G protein 100.0 2.5E-32 8.6E-37 195.1 17.7 167 15-189 4-173 (203)
39 2fg5_A RAB-22B, RAS-related pr 100.0 7E-33 2.4E-37 196.5 14.6 168 13-188 17-187 (192)
40 2g3y_A GTP-binding protein GEM 100.0 8.3E-33 2.8E-37 198.5 14.8 168 15-189 33-205 (211)
41 3q85_A GTP-binding protein REM 100.0 5.7E-33 1.9E-37 192.8 13.5 163 19-188 2-168 (169)
42 3dz8_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 199.8 10.5 167 15-189 19-188 (191)
43 3ihw_A Centg3; RAS, centaurin, 100.0 3.2E-32 1.1E-36 191.9 17.2 163 15-190 16-183 (184)
44 2gf9_A RAS-related protein RAB 100.0 2E-32 6.7E-37 193.6 16.1 165 16-188 19-186 (189)
45 2efe_B Small GTP-binding prote 100.0 1.6E-32 5.5E-37 192.6 15.3 167 15-189 8-177 (181)
46 1x3s_A RAS-related protein RAB 100.0 1.9E-32 6.6E-37 194.3 15.8 169 15-190 11-181 (195)
47 2iwr_A Centaurin gamma 1; ANK 100.0 7.3E-32 2.5E-36 188.8 18.4 163 17-191 5-173 (178)
48 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-32 4.3E-37 195.2 14.6 168 13-187 20-190 (192)
49 1r2q_A RAS-related protein RAB 100.0 1.6E-32 5.4E-37 190.5 14.6 161 17-185 4-167 (170)
50 1z0j_A RAB-22, RAS-related pro 100.0 2.3E-32 8E-37 189.7 15.3 162 16-185 3-167 (170)
51 2o52_A RAS-related protein RAB 100.0 5.8E-33 2E-37 198.2 12.4 171 12-190 18-191 (200)
52 1z08_A RAS-related protein RAB 100.0 8.3E-33 2.8E-37 192.1 12.7 164 16-187 3-169 (170)
53 2f7s_A C25KG, RAS-related prot 100.0 8.3E-33 2.8E-37 199.6 13.1 176 8-190 14-202 (217)
54 1c1y_A RAS-related protein RAP 100.0 2.6E-32 8.7E-37 189.0 15.0 162 18-186 2-166 (167)
55 1ek0_A Protein (GTP-binding pr 100.0 9.3E-33 3.2E-37 191.7 12.7 160 18-185 2-167 (170)
56 2a9k_A RAS-related protein RAL 100.0 3.5E-32 1.2E-36 191.6 15.6 168 15-190 14-184 (187)
57 1z06_A RAS-related protein RAB 100.0 1.5E-32 5E-37 194.3 13.4 166 15-187 16-188 (189)
58 1ky3_A GTP-binding protein YPT 100.0 2E-32 7E-37 192.0 14.0 170 15-189 4-180 (182)
59 1u8z_A RAS-related protein RAL 100.0 3E-32 1E-36 188.7 14.6 162 18-187 3-167 (168)
60 1kao_A RAP2A; GTP-binding prot 100.0 2.3E-32 8E-37 189.0 13.5 162 18-187 2-166 (167)
61 1g16_A RAS-related protein SEC 100.0 2.3E-32 7.7E-37 189.8 13.5 163 18-188 2-166 (170)
62 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-32 4.9E-37 192.3 12.3 168 16-189 3-175 (178)
63 4djt_A GTP-binding nuclear pro 100.0 8.7E-33 3E-37 199.7 11.5 178 15-199 7-187 (218)
64 1z2a_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 190.1 12.4 162 17-187 3-167 (168)
65 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.5E-32 2.9E-36 188.2 16.1 167 15-187 3-174 (177)
66 3o47_A ADP-ribosylation factor 100.0 7.5E-32 2.6E-36 205.7 16.6 166 17-188 163-328 (329)
67 2p5s_A RAS and EF-hand domain 100.0 2.3E-32 8E-37 194.8 12.7 164 15-186 24-196 (199)
68 2q3h_A RAS homolog gene family 100.0 7.1E-32 2.4E-36 192.5 15.1 180 1-190 2-198 (201)
69 3cpj_B GTP-binding protein YPT 100.0 2.5E-32 8.5E-37 198.0 12.5 168 15-190 9-179 (223)
70 1vg8_A RAS-related protein RAB 100.0 1.3E-31 4.5E-36 191.8 16.2 170 15-190 4-178 (207)
71 3q3j_B RHO-related GTP-binding 100.0 5.7E-32 1.9E-36 195.0 14.3 168 14-191 22-207 (214)
72 2y8e_A RAB-protein 6, GH09086P 100.0 3.2E-32 1.1E-36 190.6 12.2 164 16-187 11-177 (179)
73 3c5c_A RAS-like protein 12; GD 100.0 4.3E-32 1.5E-36 191.7 12.2 164 15-187 17-186 (187)
74 3reg_A RHO-like small GTPase; 100.0 9.1E-32 3.1E-36 191.0 13.9 167 14-190 18-191 (194)
75 2atv_A RERG, RAS-like estrogen 100.0 1.4E-31 4.7E-36 190.4 14.7 165 16-189 25-193 (196)
76 2cjw_A GTP-binding protein GEM 100.0 2.3E-31 8E-36 188.7 15.6 166 17-189 4-174 (192)
77 3lvq_E ARF-GAP with SH3 domain 100.0 3.9E-31 1.3E-35 212.4 18.8 175 16-196 319-493 (497)
78 2j1l_A RHO-related GTP-binding 100.0 1.2E-31 4E-36 193.3 13.1 172 15-190 30-212 (214)
79 3clv_A RAB5 protein, putative; 100.0 9.6E-31 3.3E-35 186.8 17.8 163 16-188 4-205 (208)
80 3cph_A RAS-related protein SEC 100.0 3.1E-31 1E-35 190.7 14.9 167 15-189 16-184 (213)
81 3con_A GTPase NRAS; structural 100.0 8.5E-31 2.9E-35 185.3 16.9 168 15-190 17-186 (190)
82 2ce2_X GTPase HRAS; signaling 100.0 7.2E-31 2.5E-35 181.2 16.0 161 19-187 3-165 (166)
83 2j0v_A RAC-like GTP-binding pr 100.0 2.2E-31 7.4E-36 191.5 12.9 166 17-192 7-185 (212)
84 2yc2_C IFT27, small RAB-relate 100.0 2.1E-31 7.1E-36 190.8 12.7 167 17-190 18-195 (208)
85 3gj0_A GTP-binding nuclear pro 100.0 4.5E-32 1.5E-36 196.3 9.0 168 13-189 9-177 (221)
86 2erx_A GTP-binding protein DI- 100.0 2.2E-31 7.6E-36 185.0 11.4 162 18-187 2-167 (172)
87 2atx_A Small GTP binding prote 100.0 1E-30 3.6E-35 185.4 14.7 161 16-186 15-192 (194)
88 2fh5_B SR-beta, signal recogni 100.0 4.4E-30 1.5E-34 184.9 16.9 167 16-184 4-213 (214)
89 1m7b_A RND3/RHOE small GTP-bin 100.0 1.2E-30 4.1E-35 183.8 13.5 162 16-187 4-183 (184)
90 1gwn_A RHO-related GTP-binding 100.0 1E-30 3.4E-35 187.2 13.2 164 14-187 23-204 (205)
91 2gco_A H9, RHO-related GTP-bin 100.0 3.2E-30 1.1E-34 184.0 15.3 167 16-186 22-199 (201)
92 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.2E-30 4E-35 183.7 12.5 168 17-188 3-181 (186)
93 3l0i_B RAS-related protein RAB 100.0 3.2E-33 1.1E-37 199.3 -1.1 169 13-187 27-196 (199)
94 2gf0_A GTP-binding protein DI- 100.0 9.2E-31 3.1E-35 186.3 11.7 167 15-189 4-173 (199)
95 4gzl_A RAS-related C3 botulinu 100.0 1.8E-30 6.1E-35 185.8 13.2 166 16-185 27-203 (204)
96 3llu_A RAS-related GTP-binding 100.0 3.2E-30 1.1E-34 183.4 14.1 168 14-185 15-195 (196)
97 3bwd_D RAC-like GTP-binding pr 100.0 6.9E-31 2.4E-35 184.4 9.6 160 17-186 6-180 (182)
98 2fv8_A H6, RHO-related GTP-bin 100.0 7.6E-30 2.6E-34 182.9 14.1 168 17-188 23-201 (207)
99 2lkc_A Translation initiation 100.0 1.6E-29 5.6E-34 176.7 14.5 166 16-190 5-174 (178)
100 2zej_A Dardarin, leucine-rich 100.0 7.8E-30 2.7E-34 179.6 9.0 168 19-189 2-180 (184)
101 2qu8_A Putative nucleolar GTP- 100.0 3.9E-28 1.3E-32 176.5 15.3 175 10-190 20-208 (228)
102 3th5_A RAS-related C3 botulinu 99.9 5.7E-31 2E-35 188.3 0.0 165 17-185 28-203 (204)
103 2f9l_A RAB11B, member RAS onco 100.0 4.4E-28 1.5E-32 172.7 14.9 165 17-189 3-170 (199)
104 3c5h_A Glucocorticoid receptor 100.0 3.9E-29 1.3E-33 184.6 7.5 169 13-186 13-254 (255)
105 2wkq_A NPH1-1, RAS-related C3 100.0 4.6E-28 1.6E-32 185.1 13.1 168 10-187 146-330 (332)
106 2gj8_A MNME, tRNA modification 100.0 3E-28 1E-32 169.7 10.9 154 18-187 3-166 (172)
107 3r7w_B Gtpase2, GTP-binding pr 100.0 9.2E-28 3.1E-32 180.4 12.9 162 21-192 1-179 (331)
108 1svi_A GTP-binding protein YSX 100.0 1.1E-27 3.6E-32 169.9 12.2 161 16-186 20-194 (195)
109 2wji_A Ferrous iron transport 100.0 9.7E-28 3.3E-32 166.0 11.2 152 18-185 2-163 (165)
110 1oix_A RAS-related protein RAB 99.9 4.2E-27 1.4E-31 166.6 14.6 163 15-185 25-190 (191)
111 3pqc_A Probable GTP-binding pr 99.9 2E-27 6.7E-32 168.4 12.4 160 16-187 20-194 (195)
112 2dyk_A GTP-binding protein; GT 99.9 1.7E-27 5.8E-32 163.8 11.0 151 20-185 2-160 (161)
113 2hjg_A GTP-binding protein ENG 99.9 8.1E-28 2.8E-32 190.0 9.9 175 18-199 174-361 (436)
114 3r7w_A Gtpase1, GTP-binding pr 99.9 1.9E-27 6.4E-32 179.9 11.3 160 18-186 2-180 (307)
115 3iev_A GTP-binding protein ERA 99.9 8.7E-27 3E-31 176.2 14.1 166 14-187 5-182 (308)
116 4dhe_A Probable GTP-binding pr 99.9 5.2E-27 1.8E-31 169.8 11.7 167 16-188 26-212 (223)
117 3a1s_A Iron(II) transport prot 99.9 4.8E-27 1.6E-31 173.4 10.1 156 17-186 3-166 (258)
118 2cxx_A Probable GTP-binding pr 99.9 2.4E-27 8.1E-32 167.4 6.5 163 20-190 2-187 (190)
119 2wjg_A FEOB, ferrous iron tran 99.9 1.2E-26 4.1E-31 163.6 9.7 156 18-189 6-171 (188)
120 1wf3_A GTP-binding protein; GT 99.9 1.1E-25 3.9E-30 169.4 14.5 159 17-185 5-171 (301)
121 4dcu_A GTP-binding protein ENG 99.9 1.6E-26 5.3E-31 183.6 9.4 176 17-199 193-381 (456)
122 3dpu_A RAB family protein; roc 99.9 5.9E-26 2E-30 183.6 12.3 163 15-188 37-209 (535)
123 3b1v_A Ferrous iron uptake tra 99.9 2.3E-26 7.8E-31 170.8 8.6 152 18-185 2-162 (272)
124 3iby_A Ferrous iron transport 99.9 9.6E-27 3.3E-31 171.6 6.1 151 20-184 2-164 (256)
125 3i8s_A Ferrous iron transport 99.9 1.6E-26 5.6E-31 172.1 6.0 155 18-186 2-168 (274)
126 2e87_A Hypothetical protein PH 99.9 2.7E-24 9.2E-29 165.8 16.4 170 17-196 165-345 (357)
127 1nrj_B SR-beta, signal recogni 99.9 9.2E-26 3.1E-30 162.7 6.9 153 15-173 8-170 (218)
128 3gee_A MNME, tRNA modification 99.9 2.9E-25 1E-29 176.1 10.1 160 16-186 230-397 (476)
129 1mky_A Probable GTP-binding pr 99.9 8.6E-25 2.9E-29 172.8 12.7 176 18-200 179-368 (439)
130 3k53_A Ferrous iron transport 99.9 4.2E-25 1.5E-29 164.4 10.2 154 18-188 2-167 (271)
131 2hjg_A GTP-binding protein ENG 99.9 8.9E-25 3.1E-29 172.6 9.9 155 19-187 3-165 (436)
132 3sjy_A Translation initiation 99.9 6.8E-24 2.3E-28 166.0 14.4 169 15-186 4-191 (403)
133 1xzp_A Probable tRNA modificat 99.9 2.2E-24 7.6E-29 171.2 11.5 155 18-187 242-405 (482)
134 3qq5_A Small GTP-binding prote 99.9 3.7E-25 1.3E-29 172.9 6.5 160 15-187 30-196 (423)
135 1mky_A Probable GTP-binding pr 99.9 2.8E-24 9.4E-29 169.9 10.9 155 20-188 2-167 (439)
136 1cip_A Protein (guanine nucleo 99.9 3.2E-23 1.1E-27 158.7 13.2 125 66-190 191-347 (353)
137 3j2k_7 ERF3, eukaryotic polype 99.9 6.4E-23 2.2E-27 161.9 15.3 160 15-179 13-217 (439)
138 3geh_A MNME, tRNA modification 99.9 9.8E-24 3.3E-28 166.8 9.7 156 17-188 222-385 (462)
139 3izy_P Translation initiation 99.9 6.2E-25 2.1E-29 175.8 2.3 162 17-186 2-167 (537)
140 1ega_A Protein (GTP-binding pr 99.9 4.5E-23 1.5E-27 155.4 10.8 157 18-185 7-173 (301)
141 1lnz_A SPO0B-associated GTP-bi 99.9 4.8E-23 1.7E-27 157.2 11.0 159 20-189 159-332 (342)
142 2xtz_A Guanine nucleotide-bind 99.9 7.1E-23 2.4E-27 156.7 11.3 124 66-190 181-348 (354)
143 2ged_A SR-beta, signal recogni 99.9 8.8E-23 3E-27 144.3 10.4 129 16-150 45-181 (193)
144 3tr5_A RF-3, peptide chain rel 99.9 1.1E-22 3.7E-27 163.3 12.0 119 17-141 11-150 (528)
145 1zcb_A G alpha I/13; GTP-bindi 99.9 2E-22 6.7E-27 154.8 12.8 125 66-190 199-356 (362)
146 3ohm_A Guanine nucleotide-bind 99.9 1.9E-22 6.5E-27 152.4 12.4 124 66-190 165-321 (327)
147 4dcu_A GTP-binding protein ENG 99.9 1.6E-23 5.3E-28 166.4 6.7 155 18-186 22-184 (456)
148 1wb1_A Translation elongation 99.9 1.3E-22 4.3E-27 161.8 11.4 165 16-186 16-188 (482)
149 3p26_A Elongation factor 1 alp 99.9 1.6E-22 5.6E-27 161.5 11.2 159 16-177 30-228 (483)
150 2ywe_A GTP-binding protein LEP 99.9 5.5E-22 1.9E-26 160.7 14.2 162 17-186 4-183 (600)
151 3lxw_A GTPase IMAP family memb 99.9 1.4E-22 4.6E-27 148.8 9.7 172 15-188 17-209 (247)
152 2xtp_A GTPase IMAP family memb 99.9 4.6E-22 1.6E-26 147.1 12.2 166 15-188 18-209 (260)
153 1zo1_I IF2, translation initia 99.9 7.5E-24 2.6E-28 168.3 2.5 159 17-183 2-163 (501)
154 3cb4_D GTP-binding protein LEP 99.9 3.2E-22 1.1E-26 162.3 11.9 161 18-186 3-181 (599)
155 1s0u_A EIF-2-gamma, translatio 99.9 1.5E-21 5.2E-26 152.9 14.9 165 16-186 5-197 (408)
156 1g7s_A Translation initiation 99.9 7.9E-22 2.7E-26 160.1 12.8 162 18-187 4-218 (594)
157 3t5d_A Septin-7; GTP-binding p 99.9 2.5E-22 8.6E-27 149.6 9.2 161 17-185 6-202 (274)
158 1zun_B Sulfate adenylate trans 99.9 5.1E-22 1.7E-26 156.8 11.4 158 16-179 21-216 (434)
159 2qtf_A Protein HFLX, GTP-bindi 99.9 3.3E-21 1.1E-25 148.4 14.9 163 19-189 178-356 (364)
160 2elf_A Protein translation elo 99.9 1E-21 3.6E-26 151.6 12.1 148 21-188 23-181 (370)
161 1azs_C GS-alpha; complex (lyas 99.9 1.3E-21 4.4E-26 151.4 12.5 125 66-190 215-388 (402)
162 2c78_A Elongation factor TU-A; 99.9 5.4E-22 1.8E-26 155.4 10.5 152 15-173 7-180 (405)
163 2aka_B Dynamin-1; fusion prote 99.9 1.4E-21 4.8E-26 147.3 12.1 162 16-184 23-250 (299)
164 1kk1_A EIF2gamma; initiation o 99.9 2.1E-21 7.1E-26 152.3 13.2 166 15-186 6-199 (410)
165 3izq_1 HBS1P, elongation facto 99.9 1.8E-22 6E-27 164.8 7.1 157 16-177 164-362 (611)
166 1d2e_A Elongation factor TU (E 99.9 5.3E-22 1.8E-26 155.0 9.2 162 18-186 2-194 (397)
167 1jny_A EF-1-alpha, elongation 99.9 2.5E-22 8.4E-27 158.5 7.1 157 17-179 4-205 (435)
168 3lxx_A GTPase IMAP family memb 99.9 5.3E-22 1.8E-26 145.1 7.8 171 15-188 25-215 (239)
169 4fid_A G protein alpha subunit 99.9 3.3E-21 1.1E-25 146.1 11.9 122 66-187 159-328 (340)
170 2qag_A Septin-2, protein NEDD5 99.9 2.9E-22 1E-26 154.4 5.8 164 16-188 34-234 (361)
171 1f60_A Elongation factor EEF1A 99.9 3E-22 1E-26 158.8 4.9 156 16-177 4-202 (458)
172 3def_A T7I23.11 protein; chlor 99.8 8.3E-21 2.9E-25 140.5 10.3 131 7-139 24-165 (262)
173 1r5b_A Eukaryotic peptide chai 99.8 1.1E-21 3.9E-26 155.9 5.5 158 16-178 40-243 (467)
174 3avx_A Elongation factor TS, e 99.8 6.5E-21 2.2E-25 161.9 10.4 164 15-185 292-484 (1289)
175 2h5e_A Peptide chain release f 99.8 1E-20 3.5E-25 152.0 11.1 119 17-141 11-150 (529)
176 2j69_A Bacterial dynamin-like 99.8 1.4E-20 4.9E-25 155.7 12.1 172 16-192 66-330 (695)
177 3mca_A HBS1, elongation factor 99.8 1.5E-22 5.3E-27 164.6 0.1 154 16-175 174-371 (592)
178 1pui_A ENGB, probable GTP-bind 99.8 3.8E-20 1.3E-24 132.5 11.8 160 15-187 22-199 (210)
179 1jwy_B Dynamin A GTPase domain 99.8 6.4E-20 2.2E-24 139.2 11.4 167 16-187 21-262 (315)
180 1h65_A Chloroplast outer envel 99.8 3.6E-20 1.2E-24 137.7 9.6 131 8-140 28-169 (270)
181 1dar_A EF-G, elongation factor 99.8 2.9E-19 1E-23 147.9 14.1 122 14-141 7-145 (691)
182 2dy1_A Elongation factor G; tr 99.8 1.6E-18 5.5E-23 143.0 14.7 117 16-138 6-139 (665)
183 2rdo_7 EF-G, elongation factor 99.8 5.8E-18 2E-22 140.3 17.3 121 15-140 6-149 (704)
184 2x2e_A Dynamin-1; nitration, h 99.8 2.9E-19 1E-23 137.5 8.9 160 17-183 29-254 (353)
185 3t34_A Dynamin-related protein 99.8 3.9E-19 1.3E-23 137.2 9.4 157 18-181 33-255 (360)
186 2xex_A Elongation factor G; GT 99.8 3.5E-18 1.2E-22 141.5 14.4 119 16-140 7-142 (693)
187 2qnr_A Septin-2, protein NEDD5 99.8 1.1E-19 3.6E-24 136.9 4.9 163 16-187 15-214 (301)
188 1udx_A The GTP-binding protein 99.8 3E-18 1E-22 133.6 10.7 159 20-189 158-327 (416)
189 1wxq_A GTP-binding protein; st 99.8 2.4E-19 8.2E-24 139.5 3.0 85 20-104 1-114 (397)
190 3p32_A Probable GTPase RV1496/ 99.7 1.3E-18 4.3E-23 134.0 6.7 168 8-187 68-284 (355)
191 2qpt_A EH domain-containing pr 99.7 2.3E-17 7.7E-22 133.3 10.0 125 17-145 63-238 (550)
192 1u0l_A Probable GTPase ENGC; p 99.7 2.9E-18 9.8E-23 129.2 4.2 135 34-183 32-169 (301)
193 2qag_C Septin-7; cell cycle, c 99.7 8.9E-18 3E-22 131.1 6.6 159 17-184 29-224 (418)
194 3vqt_A RF-3, peptide chain rel 99.7 1E-16 3.4E-21 129.4 12.8 120 15-140 27-167 (548)
195 1n0u_A EF-2, elongation factor 99.7 7.2E-17 2.5E-21 136.2 11.0 127 7-138 7-163 (842)
196 2www_A Methylmalonic aciduria 99.7 4.2E-17 1.4E-21 125.1 8.6 158 17-186 72-278 (349)
197 2p67_A LAO/AO transport system 99.7 2.8E-16 9.6E-21 120.3 10.6 166 9-186 46-260 (341)
198 1jal_A YCHF protein; nucleotid 99.7 1.7E-15 6E-20 115.8 14.7 84 20-103 3-108 (363)
199 2wsm_A Hydrogenase expression/ 99.7 5.7E-17 2E-21 116.8 6.1 156 18-189 29-216 (221)
200 3zvr_A Dynamin-1; hydrolase, D 99.7 2.9E-16 1E-20 129.8 10.5 160 17-183 49-274 (772)
201 1yrb_A ATP(GTP)binding protein 99.7 9.9E-17 3.4E-21 118.5 5.8 117 67-187 108-257 (262)
202 3l82_B F-box only protein 4; T 99.6 1E-15 3.5E-20 107.1 7.2 110 76-188 110-224 (227)
203 3j25_A Tetracycline resistance 99.6 6.7E-16 2.3E-20 126.9 6.4 161 20-186 3-238 (638)
204 2hf9_A Probable hydrogenase ni 99.6 3.7E-18 1.3E-22 123.5 -6.6 155 17-187 36-224 (226)
205 2dby_A GTP-binding protein; GD 99.6 1.4E-14 4.7E-19 111.4 11.2 84 20-103 2-111 (368)
206 4a9a_A Ribosome-interacting GT 99.6 1.3E-14 4.3E-19 111.6 10.0 116 19-138 72-195 (376)
207 4fn5_A EF-G 1, elongation fact 99.5 1.1E-13 3.7E-18 115.2 14.0 119 17-140 11-152 (709)
208 2qm8_A GTPase/ATPase; G protei 99.5 2.7E-14 9.4E-19 109.0 9.6 167 8-186 44-260 (337)
209 3l2o_B F-box only protein 4; s 99.5 1.9E-14 6.5E-19 105.5 6.8 111 75-188 194-309 (312)
210 2yv5_A YJEQ protein; hydrolase 99.4 3.7E-13 1.3E-17 101.2 6.3 111 65-182 47-164 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 9.5E-13 3.2E-17 101.7 7.0 93 13-105 16-130 (396)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 3.3E-12 1.1E-16 98.6 2.2 119 19-146 162-295 (369)
213 3h2y_A GTPase family protein; 99.1 2.1E-11 7.1E-16 94.1 3.9 122 19-149 160-297 (368)
214 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.3E-10 1.1E-14 87.7 8.6 89 15-103 16-127 (392)
215 2qag_B Septin-6, protein NEDD5 99.1 3.8E-10 1.3E-14 88.0 8.3 122 19-146 42-197 (427)
216 2j37_W Signal recognition part 99.1 4.3E-10 1.5E-14 89.7 8.1 160 17-184 99-310 (504)
217 1tq4_A IIGP1, interferon-induc 99.0 2.6E-09 9.1E-14 83.2 10.0 169 12-189 62-255 (413)
218 3sop_A Neuronal-specific septi 99.0 9.3E-10 3.2E-14 81.4 6.9 120 19-143 2-158 (270)
219 3cnl_A YLQF, putative uncharac 98.9 6.4E-10 2.2E-14 81.9 4.1 56 20-79 100-155 (262)
220 1puj_A YLQF, conserved hypothe 98.9 1.6E-09 5.6E-14 80.6 5.4 102 72-188 3-107 (282)
221 3h2y_A GTPase family protein; 98.9 1.5E-09 5E-14 83.8 4.8 100 77-185 55-158 (368)
222 1puj_A YLQF, conserved hypothe 98.9 1.8E-09 6.1E-14 80.4 4.7 60 16-79 117-176 (282)
223 3ec1_A YQEH GTPase; atnos1, at 98.8 4.6E-09 1.6E-13 81.1 4.7 100 77-185 57-160 (369)
224 3dm5_A SRP54, signal recogniti 98.6 1.2E-07 4.1E-12 74.4 8.5 116 18-140 99-254 (443)
225 1f5n_A Interferon-induced guan 98.6 1.4E-07 4.9E-12 76.6 8.4 72 8-79 27-102 (592)
226 3szr_A Interferon-induced GTP- 98.4 2.9E-07 9.9E-12 75.5 6.4 25 19-43 45-69 (608)
227 3cnl_A YLQF, putative uncharac 98.4 5.7E-08 1.9E-12 71.5 1.3 93 75-183 4-97 (262)
228 2v3c_C SRP54, signal recogniti 98.4 1.4E-06 4.8E-11 68.5 8.5 113 19-139 99-252 (432)
229 1bif_A 6-phosphofructo-2-kinas 98.3 1.3E-07 4.4E-12 75.3 0.5 98 17-116 37-144 (469)
230 1t9h_A YLOQ, probable GTPase E 98.2 2.4E-07 8.2E-12 69.5 1.2 90 81-180 76-170 (307)
231 3kl4_A SRP54, signal recogniti 98.1 1.4E-05 4.6E-10 62.8 9.2 115 18-139 96-252 (433)
232 1j8m_F SRP54, signal recogniti 98.1 5.4E-06 1.9E-10 62.0 6.6 94 66-177 179-281 (297)
233 2rcn_A Probable GTPase ENGC; Y 98.1 8.3E-06 2.8E-10 62.4 6.5 86 88-181 127-213 (358)
234 3q5d_A Atlastin-1; G protein, 98.0 1.2E-05 3.9E-10 63.4 5.8 27 16-42 64-90 (447)
235 1ex7_A Guanylate kinase; subst 97.8 1.4E-05 4.8E-10 55.5 3.7 21 22-42 4-24 (186)
236 2xxa_A Signal recognition part 97.8 6.5E-05 2.2E-09 59.1 7.1 115 18-140 99-255 (433)
237 3c8u_A Fructokinase; YP_612366 97.7 3.5E-05 1.2E-09 54.5 4.1 36 7-42 10-45 (208)
238 3e70_C DPA, signal recognition 97.7 7.5E-05 2.6E-09 56.6 5.9 25 17-41 127-151 (328)
239 1ye8_A Protein THEP1, hypothet 97.6 2.7E-05 9.4E-10 53.7 3.1 23 20-42 1-23 (178)
240 3lnc_A Guanylate kinase, GMP k 97.6 1.6E-05 5.4E-10 57.2 1.6 42 1-42 9-51 (231)
241 1kgd_A CASK, peripheral plasma 97.5 4.5E-05 1.5E-09 52.7 2.8 23 20-42 6-28 (180)
242 1lvg_A Guanylate kinase, GMP k 97.5 5.2E-05 1.8E-09 53.2 2.8 22 20-41 5-26 (198)
243 3ney_A 55 kDa erythrocyte memb 97.5 8.2E-05 2.8E-09 52.1 3.7 25 18-42 18-42 (197)
244 1zp6_A Hypothetical protein AT 97.4 7.8E-05 2.7E-09 51.7 2.9 25 18-42 8-32 (191)
245 3tr0_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 52.3 2.8 24 19-42 7-30 (205)
246 3a00_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 51.7 2.8 21 22-42 4-24 (186)
247 1t9h_A YLOQ, probable GTPase E 97.4 3.3E-05 1.1E-09 57.9 0.8 26 19-44 173-198 (307)
248 4dzz_A Plasmid partitioning pr 97.4 0.00031 1.1E-08 49.2 5.9 69 67-139 75-144 (206)
249 3tlx_A Adenylate kinase 2; str 97.4 0.00014 4.7E-09 52.7 4.1 27 15-41 25-51 (243)
250 3tau_A Guanylate kinase, GMP k 97.4 0.00017 5.9E-09 50.9 4.4 25 19-43 8-32 (208)
251 4gp7_A Metallophosphoesterase; 97.4 8.8E-05 3E-09 50.7 2.7 21 20-40 10-30 (171)
252 1znw_A Guanylate kinase, GMP k 97.4 9.4E-05 3.2E-09 52.2 2.9 26 17-42 18-43 (207)
253 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.7E-09 52.4 2.9 27 16-42 20-46 (218)
254 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 52.5 2.8 27 17-43 14-40 (219)
255 2ffh_A Protein (FFH); SRP54, s 97.3 0.00045 1.5E-08 54.1 6.3 22 19-40 98-119 (425)
256 1rz3_A Hypothetical protein rb 97.3 0.00033 1.1E-08 49.1 4.7 37 5-41 7-44 (201)
257 3tif_A Uncharacterized ABC tra 97.3 0.00016 5.4E-09 52.2 3.0 26 18-43 30-55 (235)
258 1htw_A HI0065; nucleotide-bind 97.2 0.00017 5.7E-09 48.8 2.9 27 17-43 31-57 (158)
259 3lw7_A Adenylate kinase relate 97.2 0.00019 6.6E-09 48.7 3.1 20 20-39 2-21 (179)
260 1odf_A YGR205W, hypothetical 3 97.2 0.00034 1.2E-08 52.1 4.6 27 15-41 27-53 (290)
261 1kag_A SKI, shikimate kinase I 97.2 0.00017 5.9E-09 49.1 2.8 23 20-42 5-27 (173)
262 3asz_A Uridine kinase; cytidin 97.2 0.00019 6.6E-09 50.6 3.1 25 18-42 5-29 (211)
263 2j41_A Guanylate kinase; GMP, 97.2 0.00022 7.5E-09 50.0 3.3 25 19-43 6-30 (207)
264 2bdt_A BH3686; alpha-beta prot 97.2 0.00019 6.4E-09 49.7 2.9 21 21-41 4-24 (189)
265 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.7E-09 50.4 3.0 25 18-42 11-35 (204)
266 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.3E-09 50.5 3.2 22 20-41 1-22 (216)
267 2rcn_A Probable GTPase ENGC; Y 97.2 0.0003 1E-08 53.8 4.1 25 20-44 216-240 (358)
268 2pcj_A ABC transporter, lipopr 97.2 0.00019 6.5E-09 51.4 2.9 24 20-43 31-54 (224)
269 3kb2_A SPBC2 prophage-derived 97.2 0.0002 7E-09 48.6 2.9 21 21-41 3-23 (173)
270 2v9p_A Replication protein E1; 97.2 0.00035 1.2E-08 52.3 4.3 33 9-41 116-148 (305)
271 3dl0_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 50.4 3.2 22 20-41 1-22 (216)
272 1ly1_A Polynucleotide kinase; 97.2 0.00022 7.5E-09 48.8 2.9 22 20-41 3-24 (181)
273 2onk_A Molybdate/tungstate ABC 97.2 0.00023 7.7E-09 51.5 3.1 24 20-43 25-48 (240)
274 1u0l_A Probable GTPase ENGC; p 97.1 0.00059 2E-08 51.0 5.3 26 20-45 170-195 (301)
275 2bbw_A Adenylate kinase 4, AK4 97.1 0.00026 9E-09 51.2 3.3 22 19-40 27-48 (246)
276 1sgw_A Putative ABC transporte 97.1 0.00025 8.6E-09 50.4 3.0 23 21-43 37-59 (214)
277 1b0u_A Histidine permease; ABC 97.1 0.00024 8.3E-09 52.1 3.0 26 18-43 31-56 (262)
278 2i3b_A HCR-ntpase, human cance 97.1 0.00022 7.5E-09 49.6 2.6 22 21-42 3-24 (189)
279 3gfo_A Cobalt import ATP-bindi 97.1 0.00025 8.4E-09 52.4 3.0 25 19-43 34-58 (275)
280 4eun_A Thermoresistant glucoki 97.1 0.00028 9.6E-09 49.4 3.2 24 18-41 28-51 (200)
281 2cbz_A Multidrug resistance-as 97.1 0.00029 9.8E-09 50.9 3.2 25 19-43 31-55 (237)
282 2wwf_A Thymidilate kinase, put 97.1 0.00028 9.5E-09 49.7 3.2 26 16-41 7-32 (212)
283 3cwq_A Para family chromosome 97.1 0.0019 6.5E-08 45.5 7.5 68 66-139 66-134 (209)
284 3sr0_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 49.6 3.3 22 20-41 1-22 (206)
285 1g6h_A High-affinity branched- 97.1 0.00027 9.2E-09 51.7 3.0 25 19-43 33-57 (257)
286 2qt1_A Nicotinamide riboside k 97.1 0.00035 1.2E-08 49.1 3.5 30 13-42 15-44 (207)
287 1cke_A CK, MSSA, protein (cyti 97.1 0.00032 1.1E-08 50.0 3.3 23 19-41 5-27 (227)
288 4g1u_C Hemin import ATP-bindin 97.1 0.00027 9.3E-09 51.9 3.0 25 19-43 37-61 (266)
289 1aky_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 49.9 3.3 24 18-41 3-26 (220)
290 2ff7_A Alpha-hemolysin translo 97.1 0.00032 1.1E-08 51.0 3.2 24 20-43 36-59 (247)
291 2eyu_A Twitching motility prot 97.1 0.00028 9.6E-09 51.7 2.9 26 17-42 23-48 (261)
292 2olj_A Amino acid ABC transpor 97.1 0.00029 1E-08 51.6 3.0 26 18-43 49-74 (263)
293 3cm0_A Adenylate kinase; ATP-b 97.1 0.00034 1.2E-08 48.2 3.2 23 19-41 4-26 (186)
294 1mv5_A LMRA, multidrug resista 97.1 0.00033 1.1E-08 50.8 3.2 26 18-43 27-52 (243)
295 2if2_A Dephospho-COA kinase; a 97.1 0.00031 1E-08 49.3 3.0 22 20-41 2-23 (204)
296 2cdn_A Adenylate kinase; phosp 97.1 0.00042 1.4E-08 48.5 3.7 26 16-41 17-42 (201)
297 2yv5_A YJEQ protein; hydrolase 97.1 0.00085 2.9E-08 50.2 5.5 24 20-44 166-189 (302)
298 2pze_A Cystic fibrosis transme 97.1 0.00034 1.2E-08 50.2 3.2 24 20-43 35-58 (229)
299 3ec2_A DNA replication protein 97.1 0.00025 8.7E-09 48.7 2.5 25 18-42 37-61 (180)
300 1ji0_A ABC transporter; ATP bi 97.1 0.00031 1.1E-08 50.8 3.0 24 20-43 33-56 (240)
301 1knq_A Gluconate kinase; ALFA/ 97.1 0.00044 1.5E-08 47.2 3.6 23 19-41 8-30 (175)
302 3end_A Light-independent proto 97.1 0.0045 1.5E-07 46.2 9.4 69 67-137 156-225 (307)
303 2jaq_A Deoxyguanosine kinase; 97.1 0.00035 1.2E-08 48.8 3.1 21 21-41 2-22 (205)
304 1vpl_A ABC transporter, ATP-bi 97.1 0.00032 1.1E-08 51.2 3.0 25 19-43 41-65 (256)
305 2jeo_A Uridine-cytidine kinase 97.1 0.00037 1.3E-08 50.5 3.3 32 10-41 16-47 (245)
306 2rhm_A Putative kinase; P-loop 97.1 0.00038 1.3E-08 48.2 3.3 24 18-41 4-27 (193)
307 2qi9_C Vitamin B12 import ATP- 97.1 0.00033 1.1E-08 51.0 3.0 24 20-43 27-50 (249)
308 3t61_A Gluconokinase; PSI-biol 97.0 0.00033 1.1E-08 49.1 2.9 23 19-41 18-40 (202)
309 3b85_A Phosphate starvation-in 97.0 0.00025 8.6E-09 50.1 2.3 23 20-42 23-45 (208)
310 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00034 1.2E-08 50.9 3.1 23 20-42 30-52 (250)
311 3vaa_A Shikimate kinase, SK; s 97.0 0.00036 1.2E-08 48.8 3.1 25 17-41 23-47 (199)
312 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 48.1 3.2 22 20-41 4-25 (192)
313 1qhx_A CPT, protein (chloramph 97.0 0.00034 1.2E-08 47.8 2.9 23 20-42 4-26 (178)
314 2ghi_A Transport protein; mult 97.0 0.00037 1.3E-08 51.0 3.2 26 18-43 45-70 (260)
315 2oap_1 GSPE-2, type II secreti 97.0 0.00026 8.8E-09 56.9 2.5 26 18-43 259-284 (511)
316 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 49.3 3.1 22 20-41 1-22 (214)
317 1jjv_A Dephospho-COA kinase; P 97.0 0.00042 1.4E-08 48.7 3.3 22 20-41 3-24 (206)
318 1y63_A LMAJ004144AAA protein; 97.0 0.00051 1.8E-08 47.4 3.7 25 18-42 9-33 (184)
319 2ixe_A Antigen peptide transpo 97.0 0.00036 1.2E-08 51.4 3.0 26 18-43 44-69 (271)
320 2zu0_C Probable ATP-dependent 97.0 0.00037 1.3E-08 51.2 3.1 24 19-42 46-69 (267)
321 3aez_A Pantothenate kinase; tr 97.0 0.00045 1.5E-08 52.0 3.5 27 16-42 87-113 (312)
322 2ihy_A ABC transporter, ATP-bi 97.0 0.0004 1.4E-08 51.4 3.2 25 19-43 47-71 (279)
323 1nks_A Adenylate kinase; therm 97.0 0.00036 1.2E-08 48.3 2.8 21 21-41 3-23 (194)
324 2nq2_C Hypothetical ABC transp 97.0 0.00039 1.3E-08 50.7 2.9 23 21-43 33-55 (253)
325 4a74_A DNA repair and recombin 97.0 0.00037 1.3E-08 49.6 2.8 25 17-41 23-47 (231)
326 2yz2_A Putative ABC transporte 97.0 0.00041 1.4E-08 51.0 3.0 26 18-43 32-57 (266)
327 1np6_A Molybdopterin-guanine d 97.0 0.00041 1.4E-08 47.6 2.8 23 20-42 7-29 (174)
328 2v54_A DTMP kinase, thymidylat 97.0 0.00051 1.8E-08 48.0 3.4 25 18-42 3-27 (204)
329 1tev_A UMP-CMP kinase; ploop, 97.0 0.00047 1.6E-08 47.7 3.2 23 19-41 3-25 (196)
330 3trf_A Shikimate kinase, SK; a 97.0 0.00047 1.6E-08 47.4 3.2 23 19-41 5-27 (185)
331 2plr_A DTMP kinase, probable t 97.0 0.00049 1.7E-08 48.4 3.2 23 19-41 4-26 (213)
332 4ido_A Atlastin-1; GTPase, GTP 97.0 0.002 7E-08 50.6 6.9 25 16-40 64-88 (457)
333 2c95_A Adenylate kinase 1; tra 97.0 0.00051 1.7E-08 47.7 3.3 24 18-41 8-31 (196)
334 2ehv_A Hypothetical protein PH 97.0 0.00043 1.5E-08 49.9 3.0 23 18-40 29-51 (251)
335 3uie_A Adenylyl-sulfate kinase 97.0 0.00052 1.8E-08 48.0 3.3 26 17-42 23-48 (200)
336 3umf_A Adenylate kinase; rossm 97.0 0.00067 2.3E-08 48.2 3.8 21 21-41 31-51 (217)
337 2x8a_A Nuclear valosin-contain 96.9 0.00076 2.6E-08 49.8 4.2 21 22-42 47-67 (274)
338 1zd8_A GTP:AMP phosphotransfer 96.9 0.00048 1.6E-08 49.2 3.1 24 18-41 6-29 (227)
339 2bwj_A Adenylate kinase 5; pho 96.9 0.0002 6.7E-09 49.9 1.0 23 19-41 12-34 (199)
340 2pt5_A Shikimate kinase, SK; a 96.9 0.00054 1.9E-08 46.3 3.1 22 20-41 1-22 (168)
341 2pjz_A Hypothetical protein ST 96.9 0.00053 1.8E-08 50.3 3.2 24 20-43 31-54 (263)
342 3n70_A Transport activator; si 96.9 0.00077 2.6E-08 44.6 3.7 34 9-42 14-47 (145)
343 3iij_A Coilin-interacting nucl 96.9 0.00062 2.1E-08 46.7 3.3 25 17-41 9-33 (180)
344 3tqc_A Pantothenate kinase; bi 96.9 0.00063 2.2E-08 51.3 3.6 26 16-41 89-114 (321)
345 2f1r_A Molybdopterin-guanine d 96.9 0.00024 8.1E-09 48.6 1.2 22 21-42 4-25 (171)
346 1nn5_A Similar to deoxythymidy 96.9 0.00061 2.1E-08 48.0 3.3 24 18-41 8-31 (215)
347 1jbk_A CLPB protein; beta barr 96.9 0.0011 3.7E-08 45.4 4.6 25 18-42 42-66 (195)
348 1zak_A Adenylate kinase; ATP:A 96.9 0.00051 1.7E-08 48.9 2.9 24 18-41 4-27 (222)
349 2kjq_A DNAA-related protein; s 96.9 0.00039 1.4E-08 46.4 2.1 25 18-42 35-59 (149)
350 2yvu_A Probable adenylyl-sulfa 96.9 0.00078 2.7E-08 46.5 3.7 26 16-41 10-35 (186)
351 1via_A Shikimate kinase; struc 96.9 0.00051 1.7E-08 46.9 2.7 21 21-41 6-26 (175)
352 1uj2_A Uridine-cytidine kinase 96.9 0.00062 2.1E-08 49.5 3.3 26 16-41 19-44 (252)
353 2xb4_A Adenylate kinase; ATP-b 96.9 0.00063 2.2E-08 48.5 3.1 22 20-41 1-22 (223)
354 1lw7_A Transcriptional regulat 96.9 0.00047 1.6E-08 53.0 2.6 29 15-43 164-194 (365)
355 1uf9_A TT1252 protein; P-loop, 96.9 0.0007 2.4E-08 47.2 3.3 26 17-42 6-31 (203)
356 3nh6_A ATP-binding cassette SU 96.9 0.0004 1.4E-08 52.0 2.1 25 18-42 79-103 (306)
357 1ukz_A Uridylate kinase; trans 96.9 0.0008 2.7E-08 47.1 3.5 25 17-41 13-37 (203)
358 2bbs_A Cystic fibrosis transme 96.8 0.00065 2.2E-08 50.5 3.1 25 19-43 64-88 (290)
359 1gvn_B Zeta; postsegregational 96.8 0.00077 2.6E-08 50.1 3.5 26 16-41 30-55 (287)
360 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00061 2.1E-08 52.1 3.0 24 20-43 31-54 (359)
361 3jvv_A Twitching mobility prot 96.8 0.0006 2E-08 52.2 2.8 22 21-42 125-146 (356)
362 1sq5_A Pantothenate kinase; P- 96.8 0.00079 2.7E-08 50.5 3.4 26 17-42 78-103 (308)
363 2pbr_A DTMP kinase, thymidylat 96.8 0.00077 2.6E-08 46.6 3.2 21 21-41 2-22 (195)
364 1ak2_A Adenylate kinase isoenz 96.8 0.00083 2.8E-08 48.2 3.4 25 17-41 14-38 (233)
365 4e22_A Cytidylate kinase; P-lo 96.8 0.00091 3.1E-08 48.7 3.6 23 18-40 26-48 (252)
366 1z47_A CYSA, putative ABC-tran 96.8 0.00072 2.5E-08 51.7 3.1 24 20-43 42-65 (355)
367 2yyz_A Sugar ABC transporter, 96.8 0.00074 2.5E-08 51.7 3.1 25 19-43 29-53 (359)
368 3tui_C Methionine import ATP-b 96.8 0.00074 2.5E-08 51.8 3.1 25 19-43 54-78 (366)
369 1vht_A Dephospho-COA kinase; s 96.8 0.00094 3.2E-08 47.3 3.4 24 18-41 3-26 (218)
370 3be4_A Adenylate kinase; malar 96.8 0.00086 2.9E-08 47.6 3.2 23 19-41 5-27 (217)
371 2z0h_A DTMP kinase, thymidylat 96.8 0.0009 3.1E-08 46.4 3.2 21 21-41 2-22 (197)
372 3rlf_A Maltose/maltodextrin im 96.8 0.00078 2.7E-08 51.9 3.1 25 19-43 29-53 (381)
373 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00078 2.7E-08 51.1 3.0 25 19-43 171-195 (330)
374 2it1_A 362AA long hypothetical 96.8 0.00079 2.7E-08 51.6 3.1 25 19-43 29-53 (362)
375 1ixz_A ATP-dependent metallopr 96.7 0.00076 2.6E-08 49.0 2.8 21 22-42 52-72 (254)
376 1rj9_A FTSY, signal recognitio 96.7 0.0011 3.7E-08 49.7 3.6 24 18-41 101-124 (304)
377 2p5t_B PEZT; postsegregational 96.7 0.00067 2.3E-08 49.4 2.4 27 15-41 28-54 (253)
378 1svm_A Large T antigen; AAA+ f 96.7 0.0012 4E-08 51.0 3.9 34 8-41 158-191 (377)
379 2ze6_A Isopentenyl transferase 96.7 0.00083 2.9E-08 48.9 2.9 21 21-41 3-23 (253)
380 1g29_1 MALK, maltose transport 96.7 0.00086 2.9E-08 51.7 3.1 23 21-43 31-53 (372)
381 1e6c_A Shikimate kinase; phosp 96.7 0.0009 3.1E-08 45.4 2.9 21 21-41 4-24 (173)
382 1xjc_A MOBB protein homolog; s 96.7 0.0009 3.1E-08 45.6 2.8 23 20-42 5-27 (169)
383 2gza_A Type IV secretion syste 96.7 0.00082 2.8E-08 51.6 2.9 26 17-42 173-198 (361)
384 2iyv_A Shikimate kinase, SK; t 96.7 0.00093 3.2E-08 45.9 2.9 21 21-41 4-24 (184)
385 1v43_A Sugar-binding transport 96.7 0.00089 3.1E-08 51.5 3.1 25 19-43 37-61 (372)
386 1qf9_A UMP/CMP kinase, protein 96.7 0.0013 4.3E-08 45.4 3.6 22 20-41 7-28 (194)
387 3kjh_A CO dehydrogenase/acetyl 96.7 0.0061 2.1E-07 43.8 7.4 66 65-136 129-194 (254)
388 3b9q_A Chloroplast SRP recepto 96.7 0.00086 2.9E-08 50.2 2.8 24 18-41 99-122 (302)
389 2ewv_A Twitching motility prot 96.7 0.00093 3.2E-08 51.5 3.0 25 18-42 135-159 (372)
390 2vli_A Antibiotic resistance p 96.7 0.00071 2.4E-08 46.4 2.2 23 19-41 5-27 (183)
391 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.7E-08 48.5 3.2 23 19-41 4-26 (260)
392 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.8E-08 47.6 3.2 24 18-41 8-31 (233)
393 1tue_A Replication protein E1; 96.7 0.0013 4.6E-08 46.1 3.4 26 16-41 55-80 (212)
394 1in4_A RUVB, holliday junction 96.7 0.00085 2.9E-08 50.9 2.7 23 20-42 52-74 (334)
395 1gtv_A TMK, thymidylate kinase 96.7 0.0004 1.4E-08 49.0 0.8 21 21-41 2-22 (214)
396 2p65_A Hypothetical protein PF 96.7 0.0015 5.2E-08 44.6 3.7 25 18-42 42-66 (187)
397 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4.1E-08 44.7 3.1 21 21-41 9-29 (168)
398 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.001 3.5E-08 47.3 2.9 23 19-41 23-45 (235)
399 2pez_A Bifunctional 3'-phospho 96.6 0.0013 4.6E-08 45.0 3.2 24 18-41 4-27 (179)
400 2vp4_A Deoxynucleoside kinase; 96.6 0.0012 4.2E-08 47.2 3.2 27 16-42 17-43 (230)
401 1p9r_A General secretion pathw 96.6 0.001 3.4E-08 52.1 2.8 23 20-42 168-190 (418)
402 3d31_A Sulfate/molybdate ABC t 96.6 0.00072 2.5E-08 51.6 1.9 24 20-43 27-50 (348)
403 3gd7_A Fusion complex of cysti 96.6 0.0011 3.8E-08 51.3 3.0 24 19-42 47-70 (390)
404 2grj_A Dephospho-COA kinase; T 96.6 0.0014 4.9E-08 45.6 3.2 26 17-42 10-35 (192)
405 4b4t_L 26S protease subunit RP 96.6 0.013 4.5E-07 46.0 8.9 27 16-42 212-238 (437)
406 1iy2_A ATP-dependent metallopr 96.6 0.0012 4E-08 48.7 2.8 21 22-42 76-96 (278)
407 2f6r_A COA synthase, bifunctio 96.6 0.0017 5.7E-08 48.1 3.6 24 17-40 73-96 (281)
408 3co5_A Putative two-component 96.5 0.00082 2.8E-08 44.4 1.7 26 17-42 25-50 (143)
409 1m7g_A Adenylylsulfate kinase; 96.5 0.0016 5.5E-08 45.9 3.3 26 16-41 22-47 (211)
410 1cr0_A DNA primase/helicase; R 96.5 0.0013 4.4E-08 49.0 2.8 27 16-42 32-58 (296)
411 3kta_A Chromosome segregation 96.5 0.0014 4.8E-08 44.9 2.7 22 21-42 28-49 (182)
412 1oxx_K GLCV, glucose, ABC tran 96.5 0.00071 2.4E-08 51.8 1.2 25 19-43 31-55 (353)
413 2cvh_A DNA repair and recombin 96.5 0.0015 5.1E-08 46.1 2.9 26 16-41 17-42 (220)
414 3bos_A Putative DNA replicatio 96.5 0.0016 5.6E-08 46.4 3.1 24 18-41 51-74 (242)
415 2og2_A Putative signal recogni 96.5 0.0015 5.1E-08 50.1 2.8 24 18-41 156-179 (359)
416 3nwj_A ATSK2; P loop, shikimat 96.5 0.0017 5.9E-08 47.2 3.0 23 19-41 48-70 (250)
417 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.4E-08 46.7 2.8 26 17-42 22-47 (243)
418 2chg_A Replication factor C sm 96.5 0.0036 1.2E-07 43.9 4.7 22 21-42 40-61 (226)
419 1lv7_A FTSH; alpha/beta domain 96.4 0.0016 5.4E-08 47.4 2.8 24 19-42 45-68 (257)
420 4eaq_A DTMP kinase, thymidylat 96.4 0.0023 8E-08 45.8 3.6 27 16-42 23-49 (229)
421 3t15_A Ribulose bisphosphate c 96.4 0.0022 7.6E-08 47.7 3.6 27 16-42 33-59 (293)
422 2w58_A DNAI, primosome compone 96.4 0.0019 6.6E-08 45.0 3.1 23 20-42 55-77 (202)
423 2yhs_A FTSY, cell division pro 96.4 0.0016 5.5E-08 51.8 2.8 25 17-41 291-315 (503)
424 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0016 5.4E-08 51.7 2.8 27 16-42 135-161 (460)
425 2obl_A ESCN; ATPase, hydrolase 96.4 0.0018 6.3E-08 49.4 3.0 31 14-44 66-96 (347)
426 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.9E-08 45.8 3.1 24 18-41 7-30 (230)
427 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.2E-08 47.8 2.9 22 20-41 3-24 (301)
428 1nij_A Hypothetical protein YJ 96.3 0.0018 6.3E-08 48.7 2.3 23 20-42 5-27 (318)
429 1q3t_A Cytidylate kinase; nucl 96.3 0.0031 1.1E-07 45.2 3.4 26 16-41 13-38 (236)
430 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0029 9.8E-08 42.1 3.0 20 22-41 26-45 (149)
431 3uk6_A RUVB-like 2; hexameric 96.2 0.0054 1.8E-07 46.9 4.9 30 13-42 64-93 (368)
432 3syl_A Protein CBBX; photosynt 96.2 0.0033 1.1E-07 46.9 3.6 26 16-41 64-89 (309)
433 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0028 9.5E-08 51.3 3.3 26 18-43 46-71 (538)
434 1nlf_A Regulatory protein REPA 96.2 0.0025 8.6E-08 47.0 2.8 23 19-41 30-52 (279)
435 1njg_A DNA polymerase III subu 96.2 0.0026 9.1E-08 45.2 2.8 21 21-41 47-67 (250)
436 3h4m_A Proteasome-activating n 96.2 0.0033 1.1E-07 46.3 3.4 26 17-42 49-74 (285)
437 3b60_A Lipid A export ATP-bind 96.2 0.0027 9.3E-08 51.9 3.1 26 18-43 368-393 (582)
438 3euj_A Chromosome partition pr 96.2 0.0025 8.7E-08 50.7 2.8 22 20-41 30-51 (483)
439 3b9p_A CG5977-PA, isoform A; A 96.2 0.0029 9.9E-08 46.9 3.0 25 18-42 53-77 (297)
440 3pfi_A Holliday junction ATP-d 96.2 0.0048 1.7E-07 46.6 4.3 27 16-42 52-78 (338)
441 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0036 1.2E-07 45.4 3.4 25 17-41 37-61 (262)
442 1l8q_A Chromosomal replication 96.2 0.0047 1.6E-07 46.4 4.1 25 18-42 36-60 (324)
443 2bjv_A PSP operon transcriptio 96.1 0.0041 1.4E-07 45.4 3.6 27 17-43 27-53 (265)
444 3ozx_A RNAse L inhibitor; ATP 96.1 0.0038 1.3E-07 50.5 3.7 26 19-44 25-50 (538)
445 2dpy_A FLII, flagellum-specifi 96.1 0.0029 1E-07 49.8 3.0 34 9-43 148-181 (438)
446 2qmh_A HPR kinase/phosphorylas 96.1 0.0035 1.2E-07 43.8 3.0 25 19-43 34-58 (205)
447 1d2n_A N-ethylmaleimide-sensit 96.1 0.0067 2.3E-07 44.4 4.7 27 16-42 61-87 (272)
448 3b5x_A Lipid A export ATP-bind 96.1 0.0032 1.1E-07 51.5 3.2 27 17-43 367-393 (582)
449 3ake_A Cytidylate kinase; CMP 96.1 0.0034 1.2E-07 43.8 2.9 21 21-41 4-24 (208)
450 3cf0_A Transitional endoplasmi 96.1 0.0031 1.1E-07 47.1 2.8 26 17-42 47-72 (301)
451 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0051 1.7E-07 46.9 3.9 36 6-41 9-46 (359)
452 3j16_B RLI1P; ribosome recycli 96.1 0.0044 1.5E-07 50.8 3.8 26 19-44 103-128 (608)
453 2yl4_A ATP-binding cassette SU 96.0 0.0028 9.7E-08 51.9 2.5 26 18-43 369-394 (595)
454 3qf4_B Uncharacterized ABC tra 96.0 0.0031 1.1E-07 51.7 2.7 27 17-43 379-405 (598)
455 2dr3_A UPF0273 protein PH0284; 96.0 0.0038 1.3E-07 44.8 2.9 23 19-41 23-45 (247)
456 3zvl_A Bifunctional polynucleo 96.0 0.0037 1.3E-07 48.9 3.0 25 18-42 257-281 (416)
457 2px0_A Flagellar biosynthesis 96.0 0.0036 1.2E-07 46.7 2.8 23 18-40 104-126 (296)
458 3v9p_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 44.7 2.7 27 15-41 21-47 (227)
459 1pzn_A RAD51, DNA repair and r 96.0 0.0036 1.2E-07 47.8 2.8 26 17-42 129-154 (349)
460 3uc9_A Increased recombination 96.0 0.052 1.8E-06 38.7 8.4 28 16-43 26-53 (233)
461 2c9o_A RUVB-like 1; hexameric 96.0 0.0088 3E-07 47.3 5.0 33 9-41 53-85 (456)
462 3ld9_A DTMP kinase, thymidylat 96.0 0.0055 1.9E-07 43.7 3.4 26 16-41 18-43 (223)
463 4a82_A Cystic fibrosis transme 96.0 0.0027 9.2E-08 51.9 2.0 26 18-43 366-391 (578)
464 4b4t_J 26S protease regulatory 96.0 0.013 4.6E-07 45.4 5.8 27 16-42 179-205 (405)
465 3cr8_A Sulfate adenylyltranfer 95.9 0.0032 1.1E-07 51.1 2.4 27 16-42 366-392 (552)
466 3bk7_A ABC transporter ATP-bin 95.9 0.0061 2.1E-07 50.0 4.0 27 18-44 116-142 (607)
467 4fcw_A Chaperone protein CLPB; 95.9 0.0069 2.4E-07 45.1 4.1 23 20-42 48-70 (311)
468 1sxj_C Activator 1 40 kDa subu 95.9 0.0038 1.3E-07 47.4 2.6 22 21-42 48-69 (340)
469 2qby_A CDC6 homolog 1, cell di 95.9 0.0057 1.9E-07 46.8 3.6 26 17-42 43-68 (386)
470 3ozx_A RNAse L inhibitor; ATP 95.9 0.0061 2.1E-07 49.3 3.9 24 21-44 296-319 (538)
471 1sxj_E Activator 1 40 kDa subu 95.9 0.0056 1.9E-07 46.5 3.5 21 21-41 38-58 (354)
472 1ofh_A ATP-dependent HSL prote 95.9 0.0045 1.5E-07 46.0 2.9 24 19-42 50-73 (310)
473 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0046 1.6E-07 47.5 3.0 22 18-40 23-44 (365)
474 1a7j_A Phosphoribulokinase; tr 95.9 0.0028 9.7E-08 47.1 1.7 24 18-41 4-27 (290)
475 3qf4_A ABC transporter, ATP-bi 95.9 0.0036 1.2E-07 51.2 2.5 24 19-42 369-392 (587)
476 1sxj_D Activator 1 41 kDa subu 95.9 0.009 3.1E-07 45.3 4.6 22 21-42 60-81 (353)
477 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0071 2.4E-07 48.9 4.2 24 20-43 313-336 (538)
478 3crm_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 46.5 2.9 22 20-41 6-27 (323)
479 1vma_A Cell division protein F 95.9 0.0046 1.6E-07 46.3 2.8 23 19-41 104-126 (306)
480 1c9k_A COBU, adenosylcobinamid 95.9 0.0057 1.9E-07 42.0 3.1 21 22-42 2-22 (180)
481 3d3q_A TRNA delta(2)-isopenten 95.9 0.0048 1.7E-07 46.8 2.9 22 20-41 8-29 (340)
482 2v1u_A Cell division control p 95.9 0.0057 2E-07 46.8 3.4 26 17-42 42-67 (387)
483 2h92_A Cytidylate kinase; ross 95.9 0.0047 1.6E-07 43.6 2.7 23 19-41 3-25 (219)
484 3bk7_A ABC transporter ATP-bin 95.8 0.0067 2.3E-07 49.8 3.9 24 21-44 384-407 (607)
485 1fnn_A CDC6P, cell division co 95.8 0.0051 1.8E-07 47.2 3.1 22 21-42 46-67 (389)
486 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.005 1.7E-07 46.5 2.9 25 18-42 44-68 (322)
487 1p5z_B DCK, deoxycytidine kina 95.8 0.0036 1.2E-07 45.7 2.1 26 17-42 22-47 (263)
488 4b4t_K 26S protease regulatory 95.8 0.0048 1.6E-07 48.3 2.8 27 16-42 203-229 (428)
489 4b4t_I 26S protease regulatory 95.8 0.016 5.4E-07 45.4 5.6 27 16-42 213-239 (437)
490 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0049 1.7E-07 46.2 2.7 24 18-41 37-60 (324)
491 4b4t_M 26S protease regulatory 95.8 0.0052 1.8E-07 48.2 2.8 27 16-42 212-238 (434)
492 3eie_A Vacuolar protein sortin 95.7 0.0067 2.3E-07 45.7 3.4 25 18-42 50-74 (322)
493 1u0j_A DNA replication protein 95.7 0.014 4.8E-07 42.7 4.9 32 10-41 94-126 (267)
494 2ocp_A DGK, deoxyguanosine kin 95.7 0.0066 2.3E-07 43.6 3.1 24 19-42 2-25 (241)
495 3a8t_A Adenylate isopentenyltr 95.7 0.0067 2.3E-07 45.9 3.2 23 20-42 41-63 (339)
496 4b4t_H 26S protease regulatory 95.7 0.015 5E-07 46.0 5.2 27 16-42 240-266 (467)
497 3j16_B RLI1P; ribosome recycli 95.7 0.006 2.1E-07 50.1 3.1 23 22-44 381-403 (608)
498 3exa_A TRNA delta(2)-isopenten 95.7 0.0063 2.2E-07 45.6 2.9 22 21-42 5-26 (322)
499 1ojl_A Transcriptional regulat 95.7 0.01 3.4E-07 44.4 4.0 34 9-42 15-48 (304)
500 2qby_B CDC6 homolog 3, cell di 95.6 0.013 4.6E-07 44.8 4.8 25 18-42 44-68 (384)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.5e-38 Score=227.79 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=130.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
+.+.+||+|+|++|||||||+++|+.+.|. .+.||++..+....... ++..+.+++|||+|++++..+++.|++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 346799999999999999999999999886 56889988777766655 6778999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++++|+.+..|+..+... ...+.|++|||||+|+.+.. ..++.+.+ +...+++|++|||++|.
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~------a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK------AKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEEEBTTTTB
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH------HHHhCCeeEEEeCCCCc
Confidence 99999999999999999999888765 35689999999999997653 33344333 23456789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
||+++|+.|++.+...
T Consensus 162 nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 162 NVKQLFRRVAAALPGM 177 (216)
T ss_dssp SHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987644
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-35 Score=207.18 Aligned_cols=182 Identities=40% Similarity=0.695 Sum_probs=147.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||..++++++.+... ++.++|+++|++|||||||++++.+..+..+.++.+.....+.+ +.+.+.+||+||++.
T Consensus 1 mg~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 1 MGNIFSSMFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY-----KNLKLNVWDLGGQTS 74 (183)
T ss_dssp -CHHHHHHHGGGTTC-SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEE-----TTEEEEEEEEC----
T ss_pred CchHHHHHHHHhcCC-CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 888888887766432 67899999999999999999999988887778888866655544 358899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 153 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL-KDRS 153 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC-CSSC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc-cCCc
Confidence 999999999999999999999999999999999888877644568999999999999877666667666553322 3356
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++||++|.|+++++++|.+.+.+++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999887543
No 3
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=3.7e-35 Score=206.40 Aligned_cols=175 Identities=39% Similarity=0.654 Sum_probs=143.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHh
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKS 87 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 87 (202)
+++.+.....+.++|+++|++|||||||++++.+..+..+.||.|.+...+.+ ..+.+.+||+||++.+...+..
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~ 79 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS-----QGFKLNVWDIGGQRKIRPYWRS 79 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEE-----TTEEEEEEECSSCGGGHHHHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEE-----CCEEEEEEECCCCHHHHHHHHH
Confidence 44555555578899999999999999999999998877778888876655544 3678999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++++|++++|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...++++++||
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 158 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI-RDRVWQIQSCS 158 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECC
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhc-cCCceEEEEcc
Confidence 99999999999999999999999888888766534458999999999999877666666665543222 34567899999
Q ss_pred eecCCCHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~ 188 (202)
|++|.|++++|++|.+.+.++
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 159 ALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTTCTTHHHHHHHHHHTC---
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999877644
No 4
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-35 Score=206.88 Aligned_cols=180 Identities=37% Similarity=0.634 Sum_probs=144.8
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
||..++++++ +. ..+.++|+++|++|||||||+++|.+..+..+.+|.+.+...+.+ +.+.+.+||+||+++
T Consensus 1 m~~~~~~~~~-~~--~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LF--NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HH--TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-----TTEEEEEEECCC---
T ss_pred CchHHHHHHH-hc--CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 8888888877 43 267899999999999999999999988887777888866655554 358899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+....+ ...+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~ 151 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDHQ 151 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC-CSSC
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh-cCCC
Confidence 999999999999999999999999999999999888877533458999999999999876666666666543322 3456
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++||++|.|++++|++|.+.+....
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 152 WHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred cEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999875443
No 5
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=3.1e-35 Score=208.05 Aligned_cols=183 Identities=39% Similarity=0.637 Sum_probs=148.7
Q ss_pred CCcchHHHHHHhhcCC-CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 1 MGKNSAAFFENLQASG-SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
||...+++++-+.-.. ++.++|+++|++|||||||++++.+..+..+.||.+.+...+.+ ..+.+.+|||||++
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQY-----KNISFEVWDLGGQT 77 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEE-----TTEEEEEEEECCSS
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEE-----CCEEEEEEECCCCH
Confidence 7877777766333333 78999999999999999999999988887777888866555543 46789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (202)
.+...+..+++++|++|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...
T Consensus 78 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~ 156 (189)
T 2x77_A 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI-MNR 156 (189)
T ss_dssp SSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSS
T ss_pred hHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc-cCC
Confidence 9999999999999999999999999999999988888877655568999999999999887666666665543222 345
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++++|||+++.|+++++++|.+.+.+++
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999887543
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.4e-34 Score=204.06 Aligned_cols=179 Identities=37% Similarity=0.642 Sum_probs=139.8
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 80 (202)
|| .++ +++++... ++.++|+++|++|||||||++++.+.....+.||.+.+...+.+ +.+.+.+|||||+++
T Consensus 3 mg-~~~-~~~~~~~~-~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-----RGFKLNIWDVGGQKS 74 (186)
T ss_dssp -----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEE-----TTEEEEEEEECCSHH
T ss_pred cc-hhH-HHHhhccc-CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEE-----CCEEEEEEECCCCHh
Confidence 67 333 44444332 67899999999999999999999988866778888866655544 468899999999999
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
+...+..+++++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 153 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-RSHH 153 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhc-cCCc
Confidence 999999999999999999999999999999989888877544458999999999999887666666665543222 3457
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++++++||++|.|++++|+++.+.+.++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987643
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=5.5e-34 Score=198.22 Aligned_cols=166 Identities=37% Similarity=0.657 Sum_probs=140.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.++.++|+++|++|+|||||++++.+..+..+.|+.+.+...+.+ ..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY-----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEE-----TTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEE-----CCEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 456899999999999999999999999888788888876655554 367899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL-KDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC-TTSCEEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc-cCCceEEEECcCCCCcCHH
Confidence 999999999999999988888876544458999999999999887666666655543222 3457799999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 176 EGINELYQLILK 187 (202)
Q Consensus 176 ~l~~~l~~~~~~ 187 (202)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4e-34 Score=197.70 Aligned_cols=163 Identities=48% Similarity=0.864 Sum_probs=134.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEE
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVI 99 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~ 99 (202)
+||+++|++|||||||++++.+..+..+.||.+.....+. ...+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEE-----CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEE-----ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888777788875544433 35678999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 100 DSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
|+++++++.....|+..+.......+.|+++|+||+|+.+.....++........ ....++++++|||++|.|++++|+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRHRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG-CSSCCEEEEECBTTTTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc-ccCccEEEEEcccCCCcCHHHHHH
Confidence 9999999999998888887654456899999999999987766566655554322 234568899999999999999999
Q ss_pred HHHHHHHHH
Q psy1315 180 ELYQLILKK 188 (202)
Q Consensus 180 ~l~~~~~~~ 188 (202)
+|.+.+.++
T Consensus 155 ~l~~~i~~~ 163 (164)
T 1r8s_A 155 WLSNQLRNQ 163 (164)
T ss_dssp HHHHHC---
T ss_pred HHHHHHhhc
Confidence 999887543
No 9
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=2.2e-34 Score=205.07 Aligned_cols=175 Identities=33% Similarity=0.525 Sum_probs=140.9
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
.+.....++|+|+|++|||||||+++|.+..+... .+|.+.+...+ +...+.+.+|||||++.+...+..+++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF-----EKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE-----EETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE-----EeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 44567899999999999999999999999988653 78888665544 356789999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC-------CCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEE
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN-------FNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
++|++|+|||++++++|..+..|+..+...... .+.|+++|+||+|+.......++...+....+....++++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999888887664211 3789999999999988877777777666544435577899
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++|||++|.|++++|++|.+.+.++..+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998775543
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=7.8e-34 Score=201.14 Aligned_cols=163 Identities=33% Similarity=0.504 Sum_probs=135.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++.+..+..+.+|.+.+...+.+ +.+.+.+||+||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-----GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEE-----TTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEE-----CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999999888888888876655544 3488999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh------hcCcceEEEEEeeeec
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE------LNNMHLYYIQATCAIT 170 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~ 170 (202)
+|||+++++++.....|+..+.......+.|+++|+||+|+......+++...+.... +....++++++|||++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 9999999999999999988887654445899999999999987666666666654321 1234578999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQL 184 (202)
Q Consensus 171 ~~~v~~l~~~l~~~ 184 (202)
|.|++++|++|.+.
T Consensus 176 g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 176 RNGYLEAFQWLSQY 189 (190)
T ss_dssp TBSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
No 11
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=199.32 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=124.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--chhhHHhhhcCCCE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--LRPLWKSYTRCTDG 94 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~d~ 94 (202)
++.++|+++|++|||||||+++|.+..+....++.+.+.....+.. ++..+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4579999999999999999999999988776777777766555544 55667899999999887 56677888999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+.... +...+++++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC------AVVFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHH------HHHHTSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHH------HHHcCCeEEEEecCCCC
Confidence 999999999999999998888777654455899999999999976433 2222222 12345689999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+.+++.
T Consensus 155 gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999998876543
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.6e-34 Score=198.33 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=111.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
+.+||+++|++|||||||++++.+..+....++.+.++.. .... ++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEE-TTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 3689999999999999999999988776667777766542 2233 5677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|||+++++++..+..|+..+.......+.|+++|+||+|+.+... ....... ....+++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC------AVVFDCKFIETSAALHHNVQ 152 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH------HHHTTCEEEECBGGGTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH------HHHhCCcEEEeccCCCCCHH
Confidence 999999999999999998887765566899999999999976433 2222222 22345789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKK 188 (202)
Q Consensus 176 ~l~~~l~~~~~~~ 188 (202)
++|++|.+.+.++
T Consensus 153 ~l~~~l~~~~~~~ 165 (166)
T 3q72_A 153 ALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=7.3e-34 Score=199.74 Aligned_cols=169 Identities=39% Similarity=0.682 Sum_probs=136.7
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYT 89 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 89 (202)
++.++...+.++|+++|++|||||||+++|.+..+..+.++.+.+...+.+ +.+.+.+||+||++++...+..++
T Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~ 86 (181)
T 2h17_A 12 SGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-----NNTRFLMWDIGGQESLRSSWNTYY 86 (181)
T ss_dssp ---------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-----TTEEEEEEEESSSGGGTCGGGGGG
T ss_pred CCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-----CCEEEEEEECCCCHhHHHHHHHHh
Confidence 334455678999999999999999999999999887778888877665554 348899999999999999999999
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+++|++|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||+
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDHQWHIQACCAL 165 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECBTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc-cCCceEEEEccCC
Confidence 999999999999999999999999988876533458999999999999887666666666543322 3456799999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQL 184 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~ 184 (202)
+|.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999998764
No 14
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.2e-33 Score=200.57 Aligned_cols=165 Identities=46% Similarity=0.834 Sum_probs=133.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
..+.++|+++|++|||||||++++.+..+..+.||.+.....+. ...+.+.+||+||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEE-----ETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEE-----ECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 35789999999999999999999999888777788775544433 3568999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++++++.....|+..+.......+.|+++|+||+|+.+.....++...+.... ....++++++|||++|.|++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~-~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH-LRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG-CSSCCEEEEECBTTTTBTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc-ccCCceEEEECcCCCcCCHH
Confidence 99999999999999998988887654455899999999999987766666666554322 23457889999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 176 EGINELYQLIL 186 (202)
Q Consensus 176 ~l~~~l~~~~~ 186 (202)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 15
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.2e-33 Score=199.48 Aligned_cols=175 Identities=23% Similarity=0.319 Sum_probs=136.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++|||||||+++|.+..+. .+.++.+. ........ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 46899999999999999999999988775 33444432 22222222 45677899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||++|.|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA------RSYGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH------HHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH------HHcCCeEEEEeCCCCCCH
Confidence 9999999999999999998888776556689999999999997543 333333322 234568999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 175 HEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 175 ~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+++|++|.+.+.+++.+.+.....+
T Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~ 178 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKEKMSKDGKKK 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHHhhhhcccccccc
Confidence 9999999999988876665554443
No 16
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.6e-33 Score=200.76 Aligned_cols=163 Identities=37% Similarity=0.574 Sum_probs=127.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++|||||||++++.+..+..+.+|.+.+...+.+ +.+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-----AGMTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEE-----TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEE-----CCEEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999998887777888877655544 2388999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh---------hc--CcceEEEEE
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE---------LN--NMHLYYIQA 165 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~ 165 (202)
+|||+++++++.....|+..+.......+.|+++|+||+|+......+++...+.... +. ...+.++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 9999999999999999998887654445899999999999987666667766654322 11 125689999
Q ss_pred eeeecCCCHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQL 184 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~ 184 (202)
|||++|.|++++|++|.+.
T Consensus 178 ~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=6.7e-34 Score=200.08 Aligned_cols=170 Identities=19% Similarity=0.249 Sum_probs=134.3
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
...++...+.++|+++|++|||||||+++|.+..+. .+.++.+..+ ...... ++..+.+.+||+||++.+...+..+
T Consensus 9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~ 86 (183)
T 3kkq_A 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQY 86 (183)
T ss_dssp -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHH
T ss_pred ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHH
Confidence 445566778999999999999999999999988775 4456666544 333333 4567788999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|++|+|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~ 160 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA------TKYNIPYIET 160 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH------HHHTCCEEEE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH------HHhCCeEEEe
Confidence 9999999999999999999999988888776545568999999999999763 3333333332 2335789999
Q ss_pred eee-cCCCHHHHHHHHHHHHHH
Q psy1315 167 CAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 167 Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
||+ ++.|++++|++|.+.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHhh
Confidence 999 999999999999998864
No 18
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.6e-33 Score=198.04 Aligned_cols=168 Identities=26% Similarity=0.517 Sum_probs=138.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..++.++|+|+|++|||||||+++|.+..+. .+.+|.+.++..+ ....+.+.+||+||++.+...+..+++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI-----TKGNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE-----EETTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE-----EeCCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 4567899999999999999999999988876 5678888776653 345789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|+|||+++++++.....|+..+.......+.|+++|+||+|+.......++...+..... ...++++++|||++|.|
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI-QDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGC-CSSCEEEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhh-ccCCeeEEEEECCCCCC
Confidence 99999999999999999999888876533458999999999999876655555555543222 34678899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKK 188 (202)
Q Consensus 174 v~~l~~~l~~~~~~~ 188 (202)
++++|++|.+.+.++
T Consensus 172 v~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 172 IDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=198.39 Aligned_cols=172 Identities=26% Similarity=0.337 Sum_probs=138.5
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
..+..+..++|+++|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 4556678899999999999999999999998875 45677776666666544 456688999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.... ...... +...+++++++||
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF------ADSLGIPFLETSA 160 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHH------HHHTTCCEEEECT
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHH------HHHcCCcEEEEeC
Confidence 999999999999999999998888777655 3458999999999999765432 223222 2334568999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhh
Q psy1315 169 ITGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+++.|++++|++|.+.+.++...
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876543
No 20
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=194.38 Aligned_cols=167 Identities=41% Similarity=0.627 Sum_probs=135.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC-C-CCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ-Y-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
...+.++|+++|++|||||||+++|.+.. + ..+.+|.+.....+.+ +.+.+.+||+||++.+...+..+++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS-----SSLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEEC-----SSCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEE-----CCEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 45678999999999999999999999887 3 3567777766555544 347899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCC--CCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDN--FNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+...... .+.|+++|+||+|+.......++...+....+ ...+++++++||++
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI-KDKPWHICASDAIK 170 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC-CSSCEEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc-cCCceEEEEccCCC
Confidence 9999999999999999999888888775433 58999999999999877666677666543332 23478999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
|.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987753
No 21
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=200.46 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=136.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
...++..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 345678899999999999999999999988875 55677777666555544 4566899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...++++++|||+
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQDMYYLETSAK 171 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCCEEECCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCEEEEEeCC
Confidence 99999999999999999988888776654 34579999999999997532 233333322 2345689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~ 189 (202)
+|.|++++|++|.+.+.++.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 22
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.4e-34 Score=199.31 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=109.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 4567899999999999999999999988775 45677776665544443 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA------LDYGIKFMETSAKAN 155 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH------HHHTCEEEECCC---
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH------HHcCCeEEEEeCCCC
Confidence 999999999999999998888777654 34579999999999997643 233333332 234578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q psy1315 172 DGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~ 191 (202)
.|++++|++|.+.+.++..+
T Consensus 156 ~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 156 INVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999998766543
No 23
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5e-33 Score=199.24 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=139.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++..++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 4567899999999999999999999998875 45677776666555544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||++|
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA------DANKMPFLETSALDS 155 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCCEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCeEEEEeCCCC
Confidence 999999999999999998888777654 34579999999999997643 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q psy1315 172 DGLHEGINELYQLILKKRKLQK 193 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~~~ 193 (202)
.|++++|++|.+.+.+......
T Consensus 156 ~gi~~l~~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIKESMSQQN 177 (206)
T ss_dssp TTHHHHHHHHHHHHHHHCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987654443
No 24
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.1e-33 Score=197.06 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=137.3
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
+....++.++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 4456678899999999999999999999988875 45667666665555544 455689999999999999999999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa 154 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFA------QENELMFLETSA 154 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEecC
Confidence 999999999999999999988888766554 34589999999999996532 223333322 334578999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q psy1315 169 ITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+++.|++++|+++.+.+.++..
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998876543
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=196.63 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=138.0
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
......+++.++|+|+|++|||||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||.+.+...+..+
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~ 94 (193)
T 2oil_A 16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAY 94 (193)
T ss_dssp ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHH
Confidence 334456778899999999999999999999998876 45677777666555544 4567899999999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~ 167 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFA------ENNGLLFLET 167 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEE
Confidence 99999999999999999999888888777654 34589999999999997542 233333322 2345789999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHH
Q psy1315 167 CAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
||+++.|++++|++|.+.+.++.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=195.97 Aligned_cols=170 Identities=25% Similarity=0.337 Sum_probs=135.5
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
....++.++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++.
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 345678899999999999999999999998875 55677776666555544 4556899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|+.+... ........ ...+++++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFA------GQMGIQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHH------HHcCCeEEEEECC
Confidence 99999999999999999998888877664 34799999999999876432 22333222 2345689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
+|.|++++|++|.+.+.+.+.+
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998876653
No 27
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=199.65 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=130.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
....+..++|+++|++|||||||+++|.+..+. .+.+|.+.++....+.. ++..+.+.+||+||++++...+..++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 345677899999999999999999999988875 45677776555544443 4556899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceE-EEEEeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLY-YIQATCA 168 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 168 (202)
+|++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...++ ++++|||
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~~SA 174 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLA------EHYDILCAIETSA 174 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCSEEEECBT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHH------HHcCCCEEEEEeC
Confidence 99999999999999999988888777665 3458999999999999753 3333444432 23355 8999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
+++.|++++|++|.+.+.++.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=196.00 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=128.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
..++..++|+++|++|+|||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGG
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 45678899999999999999999999998874 45677777766655444 4567889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLA------KEYGLPFMETSAK 156 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHH------HHHTCCEEECCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccCcccccCHHHHHHHH------HHcCCeEEEEeCC
Confidence 99999999999999999888888777654 23589999999999997643 233333322 2335689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q psy1315 170 TGDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~~ 191 (202)
++.|++++|+++.+.+.+++.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998766543
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2e-33 Score=197.35 Aligned_cols=168 Identities=19% Similarity=0.213 Sum_probs=132.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.++ ...... ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 46899999999999999999999977765 5567777665 333333 45668899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA------ESWNAAFLESSAKENQT 155 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEECCTTSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH------HHhCCcEEEEecCCCCC
Confidence 9999999999999999998888776556689999999999996543 233333332 33466899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1315 174 LHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~~~~ 192 (202)
++++|++|.+.+.+++...
T Consensus 156 v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 156 AVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999998766443
No 30
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=196.71 Aligned_cols=168 Identities=19% Similarity=0.296 Sum_probs=134.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+|+|++|||||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 4457899999999999999999999988775 44566554432 22222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------EQWNVNYVETSAKTR 161 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH------HHhCCeEEEEeCCCC
Confidence 999999999999999999888888776555689999999999997643 333444332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.+++.
T Consensus 162 ~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 162 ANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccc
Confidence 9999999999999877644
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5.2e-33 Score=194.58 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=134.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
......++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 45667899999999999999999999988875 45677776666555544 45678899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA------EENGLLFLEASAKT 161 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCC
Confidence 9999999999999999988887776654 34589999999999996532 233344332 23457899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
+.|++++|++|.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 162 GENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=197.95 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=128.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhh
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYT 89 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~ 89 (202)
.++.....++|+++|++|||||||+++|.+..+. ...++.+.......+.+ ++..+.+.+||++|++.+.. ++..++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 94 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCL 94 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhh
Confidence 3445667899999999999999999999765432 23344444444433333 56678899999999987765 788889
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+.+|++|+|||++++.+|..+..|+..+.......+.|+++|+||+|+.... ...+.+... ...++++++||
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a------~~~~~~~~e~S 168 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTLSCKHIETS 168 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEEEB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH------HHhCCEEEEEc
Confidence 9999999999999999999999998887765434589999999999997543 233333322 22346899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh
Q psy1315 168 AITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+++.|++++|+++++.+.+++.
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999998875543
No 33
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.5e-32 Score=195.17 Aligned_cols=168 Identities=26% Similarity=0.307 Sum_probs=134.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-----------ccccccceeeEeecccccccceEEEEEEcCCCCCchh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 83 (202)
..+..+||+++|++|||||||++.+.+..... +.+|.+.++........++..+.+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 45678999999999999999997766544333 2346666666555422256778999999999999999
Q ss_pred hHHhhhcCCCEEEEEEeCC------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC
Q psy1315 84 LWKSYTRCTDGIIFVIDST------DVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157 (202)
Q Consensus 84 ~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 157 (202)
.+..+++++|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+.....+......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------ 161 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD------ 161 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC------
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH------
Confidence 9999999999999999999 55677777777776632 346899999999999988777777766553
Q ss_pred cceE-EEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHLY-YIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..++ +++++||++|.|++++|++|.+.+.++..
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 3455 89999999999999999999999987654
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.5e-32 Score=194.62 Aligned_cols=171 Identities=22% Similarity=0.318 Sum_probs=136.8
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cccccccceee-Eeeccccccc---------ceEEEEEEcCCCCCc
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCE-KVKGQIGKCK---------GINFLIWDVGGQEKL 81 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~D~~G~~~~ 81 (202)
.+.++..++|+|+|++|||||||+++|.+..+. .+.++.+.++. ...... ... .+.+.+||+||++.+
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 83 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF 83 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH
Confidence 345678899999999999999999999988775 45677776665 333322 223 678999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcc
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 159 (202)
...+..+++++|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+. .......... ...
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~ 157 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA------EKY 157 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH------HHH
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHc
Confidence 99999999999999999999999999998888887776544468999999999999753 2333343332 233
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+++++++||+++.|++++|++|.+.+.++..
T Consensus 158 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 158 GIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999876654
No 35
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=6.4e-33 Score=196.51 Aligned_cols=168 Identities=25% Similarity=0.323 Sum_probs=133.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 4668899999999999999999999998875 44566676665555544 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||+++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA------REHGLIFMETSAKTA 168 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEEECTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHH------HHcCCEEEEEeCCCC
Confidence 999999999999999988888777654 34589999999999996532 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.++..
T Consensus 169 ~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 169 CNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.1e-33 Score=194.21 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=135.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
....+.++|+++|++|||||||+++|.+..+. .+.++.+..+. ..... ++..+.+.+||+||++++...+..+++.+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 34567899999999999999999999988775 45566665544 22222 44567899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ....... +...+++++++||++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~ 155 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF------GASHHVAYFEASAKL 155 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH------HHHcCCeEEEecCCC
Confidence 99999999999999999998888886654556899999999999976432 2333322 123467899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy1315 171 GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~ 190 (202)
|.|++++|++|.+.+.+++.
T Consensus 156 ~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999876654
No 37
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=199.29 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+|+|++|||||||+++|.+..+. .+.++.+..+ ...... .+..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 357899999999999999999999998876 4456666554 333333 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||+++++++..+..|+..+.......+.|+++|+||+|+..... ....... +...+++++++||++|.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL------AESWGATFMESSARENQ 172 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEECCTTCHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH------HHHhCCeEEEEeCCCCC
Confidence 999999999999999999998887765556899999999999975433 2233222 23345689999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy1315 173 GLHEGINELYQLILKKRKL 191 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~~ 191 (202)
|++++|++|.+.+.+.+..
T Consensus 173 ~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999998776554
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=195.14 Aligned_cols=167 Identities=23% Similarity=0.283 Sum_probs=136.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.+...++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 3557899999999999999999999998875 45677777766555544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ........ ...+++++++||++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA------DHLGFEFFEASAKDN 155 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHH------HHCCCeEEEEECCCC
Confidence 999999999999999988888777654 345899999999999976432 33333322 233568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.++.
T Consensus 156 ~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 156 INVKQTFERLVDVICEKM 173 (203)
T ss_dssp BSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-33 Score=196.48 Aligned_cols=168 Identities=23% Similarity=0.286 Sum_probs=136.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
++.+++.++|+++|++|+|||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||++.+...+..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 345678999999999999999999999998875 66788888777666655 5577899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...+++++++||+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA------ESIGAIVVETSAK 168 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HTTTCEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCC
Confidence 99999999999999999998888777654 3458999999999999753 2333444432 2345789999999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~ 188 (202)
++.|++++|++|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999877543
No 40
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-33 Score=198.47 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=125.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC--CCccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY--LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRC 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~ 91 (202)
.....+||+++|++|||||||+++|.+... ....++.+.++....+.+ ++..+.+.+|||+|++. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345679999999999999999999996443 344455666655544444 56677889999999876 45667778899
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++++|..+..|+..+.......+.|+++|+||+|+..... ..+.+. ++...++++++|||+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~------~a~~~~~~~~e~SAk 185 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA------CAVVFDCKFIETSAA 185 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH------HHHHHTCEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH------HHHHcCCEEEEEeCC
Confidence 999999999999999999988887776542334799999999999975322 222222 112345789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~ 189 (202)
+|.|++++|++|.+.+..++
T Consensus 186 ~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 186 VQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp TTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999886443
No 41
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.7e-33 Score=192.81 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhhcCCCEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYTRCTDGII 96 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~~i 96 (202)
.+||+++|++|||||||+++|.+..+. ...++.+.......+.. ++..+.+.+||+||++.+.. .+..+++++|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 589999999999999999999876654 22233333333333333 56678999999999988876 7778889999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ......... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTLSCKHIETSAALHHNT 154 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECBTTTTBSH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH------HHcCCcEEEecCccCCCH
Confidence 999999999999999999988876555689999999999997432 333333322 334668999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILKK 188 (202)
Q Consensus 175 ~~l~~~l~~~~~~~ 188 (202)
+++|+++.+.+..+
T Consensus 155 ~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 155 RELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=199.76 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=137.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.++..+||+|+|++|||||||+++|.+..+. .+.++.+.+........ ....+.+.+||+||++.+...+..+++++|
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 4567899999999999999999999988875 45677777766666654 567789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ......... ...+++++++||++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA------EQLGFDFFEASAKEN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCeEEEEECCCC
Confidence 999999999999999988887777664 45589999999999996543 223333322 334568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.++.
T Consensus 171 ~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDKM 188 (191)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
No 43
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.2e-32 Score=191.90 Aligned_cols=163 Identities=19% Similarity=0.286 Sum_probs=126.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+||+++|++|||||||++++++..+.. +.++.+... ..+.. ++..+.+.+|||+|++.+. +++++|
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK--KEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEE--EEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEE--EEEEE-CCEEEEEEEEECCCChhhh-----eecCCC
Confidence 45679999999999999999999999988764 455533222 33333 5667889999999998776 778899
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC----CcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN----AIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. .....+...... .....++++|||+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-----DLKRCTYYETCAT 162 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HTTTCEEEEEBTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-----HcCCCeEEEecCC
Confidence 9999999999999999998888887764445899999999999942 223333333321 1223789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q psy1315 170 TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+|.|++++|+++.+.+.++++
T Consensus 163 ~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp TTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999998886654
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2e-32 Score=193.64 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=134.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..++|+++|++|+|||||+++|.+..+. .+.++.+.++....... ....+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 456799999999999999999999998875 45677777766555544 4567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ....+... ...+++++++||++|.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA------DDLGFEFFEASAKENI 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH------HHcCCeEEEEECCCCC
Confidence 99999999999999988888776654 345899999999999975432 23333322 2335689999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKK 188 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~ 188 (202)
|++++|++|.+.+.++
T Consensus 171 gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 171 NVKQVFERLVDVICEK 186 (189)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.6e-32 Score=192.56 Aligned_cols=167 Identities=25% Similarity=0.304 Sum_probs=133.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|+|||||+++|.+..+. ...++.+.++....+.. +...+.+.+||+||++.+...+..+++.+|
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 4567899999999999999999999988876 34577776666655544 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYA------QENGLFFMETSAKTA 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH------HHTTCEEEECCSSSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHH------HHcCCEEEEEECCCC
Confidence 999999999999999988888877765 34589999999999996543 233344332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.+.+
T Consensus 160 ~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp TTHHHHHHHHHHTCC---
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999998775543
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=194.30 Aligned_cols=169 Identities=24% Similarity=0.327 Sum_probs=138.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. +...+.+.+||+||++.+...+..+++++|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3456799999999999999999999998875 56777777766655544 556789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||+++.
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA------RKHSMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH------HHTTCEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH------HHcCCEEEEecCCCCC
Confidence 999999999999999988888887765444689999999999995432 233333322 2345789999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|++++|++|.+.+.+...
T Consensus 164 gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp THHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999876543
No 47
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.3e-32 Score=188.83 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=125.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.+||+++|++|||||||+++|.+..+..+.+|.+..+ ...+.. ++..+.+.+||+||+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998877778777544 333333 45678899999999876 46788899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHc--cCCCCCCcEEEEeeCCCCCC----CcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIK--NNDNFNVPILILANKQDLPN----AIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~--~~~~~~~pvivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
+|||+++++++..+..|+..+.. .....+.|+++|+||+|+.. .....+...... ...+++++++||++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~ 152 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-----DMKRCSYYETXATY 152 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HHSSEEEEEEBTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-----hhcCCeEEEEeccc
Confidence 99999999999999886543332 22235899999999999942 223333333221 12367999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q psy1315 171 GDGLHEGINELYQLILKKRKL 191 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~~~ 191 (202)
|.|++++|+++.+.+.+.++.
T Consensus 153 ~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 153 GLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp TBTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999998876553
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=195.19 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=129.6
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
++.....++|+++|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 445678899999999999999999999988875 45677776666655544 4556889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+.+.... ...+.+++++||+
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~ 172 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ-----QITGMRFCEASAK 172 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TSTTCEEEECBTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----hcCCCeEEEEeCC
Confidence 99999999999999999988777665544 445899999999999975432 333333221 1236789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|++++|++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 49
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.6e-32 Score=190.50 Aligned_cols=161 Identities=23% Similarity=0.286 Sum_probs=131.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.++....... +...+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35799999999999999999999988775 45677777766555544 45678999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYA------DDNSLLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHH------HHcCCeEEEEeCCCCCC
Confidence 9999999999999998888877665 34589999999999996542 233333322 23467899999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLI 185 (202)
Q Consensus 174 v~~l~~~l~~~~ 185 (202)
++++|++|.+.+
T Consensus 156 i~~l~~~i~~~~ 167 (170)
T 1r2q_A 156 VNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.3e-32 Score=189.72 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=132.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|+|||||++++.+..+. .+.++.+.++....... ....+.+.+||+||.+.+...+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 456799999999999999999999998875 55788887776665554 4566889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ..+..|+++|+||+|+.+... ........ ...+.+++++||+++.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA------DSIHAIFVETSAKNAI 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH------HHcCCEEEEEeCCCCc
Confidence 99999999999999988887777654 456899999999999975432 23333322 2345789999999999
Q ss_pred CHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLI 185 (202)
Q Consensus 173 ~v~~l~~~l~~~~ 185 (202)
|++++|++|.+.+
T Consensus 155 ~i~~l~~~i~~~i 167 (170)
T 1z0j_A 155 NINELFIEISRRI 167 (170)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 51
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=198.15 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=128.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhc
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTR 90 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 90 (202)
....+++.++|+|+|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 3445778999999999999999999999988775 45667676655555544 455689999999999888888999999
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+..... ..+..... ...+++++++||
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~SA 169 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA------QENELMFLETSA 169 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEECT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEEeC
Confidence 999999999999999999988888777654 345899999999999965432 23333322 234578999999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q psy1315 169 ITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++|.|++++|++|.+.+.++..
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886654
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=8.3e-33 Score=192.08 Aligned_cols=164 Identities=27% Similarity=0.334 Sum_probs=126.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.++.++|+++|++|+|||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 457899999999999999999999988775 45677776666555544 5667899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 154 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA------ESVGAKHYHTSAKQNK 154 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEEBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH------HHcCCeEEEecCCCCC
Confidence 99999999999999988887766543 23478999999999997542 333333332 2345789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++|++|.+.+.+
T Consensus 155 gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 155 GIEELFLDLCKRMIE 169 (170)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988753
No 53
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=8.3e-33 Score=199.63 Aligned_cols=176 Identities=23% Similarity=0.367 Sum_probs=134.4
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeeccccccc----------ceEEEEEEcC
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCK----------GINFLIWDVG 76 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~ 76 (202)
........++..++|+|+|++|||||||+++|.+..+. .+.++.+..+....+.. +.. .+.+.+||+|
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~ 92 (217)
T 2f7s_A 14 LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTA 92 (217)
T ss_dssp -------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEE
T ss_pred cCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECC
Confidence 33444556788999999999999999999999988775 44566665554444433 223 6789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYE 154 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~ 154 (202)
|++.+...+..+++.+|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+..... ........
T Consensus 93 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~---- 168 (217)
T 2f7s_A 93 GQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA---- 168 (217)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred CcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH----
Confidence 999999999999999999999999999999999888877766543336899999999999975432 33333322
Q ss_pred hcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 155 LNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
...+++++++||+++.|++++|++|.+.+.++..
T Consensus 169 --~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 169 --DKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp --HHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred --HHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 2345689999999999999999999998876543
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.6e-32 Score=188.99 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=129.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|||||||++++.+..+. .+.++.+.... ..... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4689999999999999999999988775 44566654443 22323 556788999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+...... ...+.+++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTSCEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-----HccCCcEEEecCCCCCCH
Confidence 9999999999999888887776654456899999999999975432 333333221 123678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 175 HEGINELYQLIL 186 (202)
Q Consensus 175 ~~l~~~l~~~~~ 186 (202)
++++++|.+.+.
T Consensus 155 ~~l~~~l~~~i~ 166 (167)
T 1c1y_A 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-33 Score=191.66 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=130.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|||||||++++.+..+. .+.++.+.+........ ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 4689999999999999999999988875 46678787766555544 556789999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-----cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-----IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+... ......... +...+++++++||++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~ 153 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKL------AEEKGLLFFETSAKTG 153 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH------HHHHTCEEEECCTTTC
T ss_pred EEEecCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHH------HHHcCCEEEEEeCCCC
Confidence 999999999999998888777665 3458999999999999653 222222222 1234578999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|++|.+.+
T Consensus 154 ~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 154 ENVNDVFLGIGEKI 167 (170)
T ss_dssp TTHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.5e-32 Score=191.62 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=133.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|+|||||+++|.+..+. .+.++.+..... .+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-EEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-EEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3456899999999999999999999988775 445555544422 2222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------EQWNVNYVETSAKTR 165 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH------HHcCCeEEEeCCCCC
Confidence 99999999999999999988888777655558999999999999654 2333444332 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.+++.
T Consensus 166 ~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 166 ANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999987654
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.5e-32 Score=194.30 Aligned_cols=166 Identities=24% Similarity=0.358 Sum_probs=130.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch-hhHHhhhcCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR-PLWKSYTRCT 92 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~ 92 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+. ..+..+++++
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 3457899999999999999999999988875 45677776666555544 4556899999999999888 8899999999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
|++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. .....+... ...+++++++||++
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA------DTHSMPLFETSAKN 168 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCCEEECCSSS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH------HHcCCEEEEEeCCc
Confidence 9999999999999999999888887776445689999999999996543 233333322 23456899999999
Q ss_pred C---CCHHHHHHHHHHHHHH
Q psy1315 171 G---DGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~---~~v~~l~~~l~~~~~~ 187 (202)
+ .|++++|++|.+.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGGSCHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHhh
Confidence 9 9999999999887653
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2e-32 Score=192.01 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=122.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||++++.+..+. .+.++.+.+.....+.......+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 3567899999999999999999999998875 556777766666555542355689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCc---CHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAI---QIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++|+|||++++.++..+..|+..+.... ...+.|+++|+||+|+.... ...+...... ...+.+++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 158 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-----SLGDIPLFLTS 158 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----HTTSCCEEEEB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-----hcCCCeEEEEe
Confidence 9999999999999999888877765542 22588999999999995432 2333333221 13467899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|++|.|++++|++|.+.+.+++
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3e-32 Score=188.67 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=127.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+..... .... ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE-EEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 5789999999999999999999988775 445555544432 2222 456678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------DQWNVNYVETSAKTRANV 154 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTCEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH------HHcCCeEEEeCCCCCCCH
Confidence 999999999999999888888776555589999999999996542 333343332 234568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
+++|+++.+.+.+
T Consensus 155 ~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 155 DKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.3e-32 Score=189.01 Aligned_cols=162 Identities=18% Similarity=0.226 Sum_probs=128.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+... ...... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4689999999999999999999988775 3445544332 333333 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCCH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGL 174 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (202)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ........ ...+++++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA------EEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTSCEEEECTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH------HHhCCCEEEecCCCCcCH
Confidence 9999999999999998888887765556899999999999865432 22333322 223568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 175 HEGINELYQLILK 187 (202)
Q Consensus 175 ~~l~~~l~~~~~~ 187 (202)
++++++|.+.+.+
T Consensus 154 ~~l~~~l~~~~~~ 166 (167)
T 1kao_A 154 DELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987753
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.3e-32 Score=189.79 Aligned_cols=163 Identities=28% Similarity=0.381 Sum_probs=127.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
..++|+++|++|+|||||++++.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++++|++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999988875 45677776665555544 456788999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||++|.|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA------KELGIPFIESSAKNDDNVN 153 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH------HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHH------HHcCCeEEEEECCCCCCHH
Confidence 999999999999888888777664 34589999999999995432 233333322 2335689999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1315 176 EGINELYQLILKK 188 (202)
Q Consensus 176 ~l~~~l~~~~~~~ 188 (202)
++|++|.+.+.++
T Consensus 154 ~l~~~l~~~~~~~ 166 (170)
T 1g16_A 154 EIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 62
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.4e-32 Score=192.29 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=130.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+. .+.++.+.......+...+...+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456899999999999999999999988875 4567777666555554422246899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCc-EEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNND-NFNVP-ILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-vivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
+|+|||++++.++..+..|+..+..... ....| +++|+||+|+.+.. ...+..... ...+++++++||++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~ 156 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC------QENGFSSHFVSAKT 156 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH------HHcCCcEEEEeCCC
Confidence 9999999999999988877776654211 11345 89999999997532 233333322 23457899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILKKR 189 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~~~ 189 (202)
|.|++++|++|.+.+.+.+
T Consensus 157 ~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 157 GDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999876543
No 63
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.7e-33 Score=199.66 Aligned_cols=178 Identities=22% Similarity=0.203 Sum_probs=140.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.+..........+..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 4567899999999999999999999988775 446777777766666443344488999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ........ ....+++++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~g 159 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV------LKGKNYEYFEISAKTA 159 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHH------TTTCCCEEEEEBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHH------HHHcCCcEEEEecCCC
Confidence 999999999999999988887776654 34468999999999997642 22223332 2445678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 172 DGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
.|++++|++|.+.+.+++.....+.++.
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred CCHHHHHHHHHHHHhcccccccccccCc
Confidence 9999999999999988877766655553
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.6e-32 Score=190.14 Aligned_cols=162 Identities=21% Similarity=0.304 Sum_probs=132.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
+..++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 46899999999999999999999988775 45677776666555544 45578999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA------KRLKLRFYRTSVKEDLN 153 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH------HHcCCeEEEEecCCCCC
Confidence 99999999999998888887776643 578999999999997532 233333322 23456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
+++++++|.+.+.+
T Consensus 154 i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 154 VSEVFKYLAEKHLQ 167 (168)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.5e-32 Score=188.21 Aligned_cols=167 Identities=20% Similarity=0.306 Sum_probs=132.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|+|||||++++.+..+. ...++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 3557899999999999999999999988775 55677777766655544 456689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+... ....+...... ...+.+++++||+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 156 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR-----DNGDYPYFETSAK 156 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH-----HTTCCCEEECCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH-----hcCCceEEEEeCC
Confidence 99999999999999988888777654321 257899999999999743 33344444321 1346789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLILK 187 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~ 187 (202)
+|.|++++|+++.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 66
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-32 Score=205.66 Aligned_cols=166 Identities=48% Similarity=0.863 Sum_probs=136.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
++.++|+|+|++|||||||+++|.+..+....||.+.....+. ...+.+.+|||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEE-----ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEe-----cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3567999999999999999999999888766777776665543 45688999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
+|||++++.++..+..++..+.......+.|+++|+||+|+.+.....++...+..... ...+++++++||++|.|+++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC-CSSCEEEEECBTTTTBTHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh-hcCCCEEEEEECCCCcCHHH
Confidence 99999999999999999988877655568999999999999887777777666654332 45678999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1315 177 GINELYQLILKK 188 (202)
Q Consensus 177 l~~~l~~~~~~~ 188 (202)
+|++|.+.+.++
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=194.83 Aligned_cols=164 Identities=24% Similarity=0.331 Sum_probs=122.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..++.++|+++|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 4567899999999999999999999998875 55677776666555544 556788999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC------C--cCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN------A--IQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.. . ......... +...++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~ 175 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL------AMTYGALFCE 175 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH------HHHHTCEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH------HHHcCCeEEE
Confidence 999999999999999988877766544 345799999999999852 1 122222222 2234678999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+||++|.|++++|++|.+.+.
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998775
No 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=7.1e-32 Score=192.49 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=122.1
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
||.-......+......+.++|+++|++|||||||+++|.+..+. .+.+|.+..+. ..+.. ++..+.+.+||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSV-DGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEE-TTEEEEEEEEECCCST
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEE-CCEEEEEEEEECCCCH
Confidence 343333333344556778999999999999999999999988765 44566654432 22222 4556789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHH
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIK 144 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~ 144 (202)
.+...+..+++++|++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.... ...
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 99999999999999999999999999999987 566555543 2389999999999996531 122
Q ss_pred HHHHHhCchhhcCcceE-EEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 145 QIEKLLGLYELNNMHLY-YIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+..... ...+. ++++|||++|.|++++|++|.+.+.+.+.
T Consensus 158 ~~~~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 158 AAKLLA------EEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HHHHHH------HHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH------HhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 222221 22233 89999999999999999999999876654
No 69
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-32 Score=198.02 Aligned_cols=168 Identities=24% Similarity=0.351 Sum_probs=128.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 4567899999999999999999999998876 45677776666555544 455689999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||+++
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFA------QENQLLFTETSALNS 160 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHH------HHTTCEEEECCCC-C
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCCC
Confidence 999999999999999988888777654 34578999999999997532 233333322 234578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+.++..
T Consensus 161 ~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC-
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999998875543
No 70
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=1.3e-31 Score=191.82 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+|+|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCc
Confidence 3567899999999999999999999998875 55677776666666554 456789999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC---CCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND---NFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.... .......... ...+.+++++||+
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY-----SKNNIPYFETSAK 157 (207)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-----HTTSCCEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH-----hcCCceEEEEeCC
Confidence 99999999999999988888776655421 2478999999999997432 3333333221 1346789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q psy1315 170 TGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~~~~~ 190 (202)
+|.|++++|++|.+.+.+++.
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999877654
No 71
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=5.7e-32 Score=194.96 Aligned_cols=168 Identities=19% Similarity=0.199 Sum_probs=128.0
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
......+||+++|++|||||||+++|.+..+. .+.+|.+.++. ..... ++..+.+.+||++|++.+..++..+++++
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34567899999999999999999999998876 44677776553 23333 56678999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHH-HHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcC
Q psy1315 93 DGIIFVIDSTDVERMEE-VKIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNN 157 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~ 157 (202)
|++|+|||++++.++.. +..|+..+... ..+.|+++|+||+|+.++ ....+.... +.
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~------~~ 171 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI------AK 171 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH------HH
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH------HH
Confidence 99999999999999998 56666666554 358999999999999753 223333332 23
Q ss_pred cceE-EEEEeeeecCCC-HHHHHHHHHHHHHHHHhh
Q psy1315 158 MHLY-YIQATCAITGDG-LHEGINELYQLILKKRKL 191 (202)
Q Consensus 158 ~~~~-~~~~~Sa~~~~~-v~~l~~~l~~~~~~~~~~ 191 (202)
..++ ++++|||++|.| ++++|+++.+.+.+.+..
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 3456 899999999998 999999999998766543
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=3.2e-32 Score=190.56 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=130.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 346799999999999999999999988775 44677776665555544 4556789999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+..... ...+++++++||+++.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKA------KELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHH------HHHTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHH------HHcCCeEEEEeCCCCC
Confidence 99999999999999988888777654 235799999999999975432 33333322 2345789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILK 187 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~ 187 (202)
|++++|++|.+.+.+
T Consensus 163 ~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 163 NVKQLFRRVAAALPG 177 (179)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999886643
No 73
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=4.3e-32 Score=191.68 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=124.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.+||+++|++|||||||+++|.+..+. .+.+|.+..+. ..... ++..+.+.+||+||++.+... ..+++.+|
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4567899999999999999999999998875 55677775542 22222 456789999999999887765 67899999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeee-
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCA- 168 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa- 168 (202)
++|+|||+++++++..+..|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...++++++|||
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~ 167 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA------GRFGCLFFEVSAC 167 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCEEEECCSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH------HHcCCcEEEEeec
Confidence 99999999999999999988877765421 2489999999999996542 333333332 234568999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
+++.|++++|++|.+.+.+
T Consensus 168 ~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SCSHHHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHhh
Confidence 8999999999999988753
No 74
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=9.1e-32 Score=190.96 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=129.4
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
....+.++|+++|++|+|||||+++|.+..+. .+.++.+.++... ... ++..+.+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKY-KNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE-EEE-CCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 34667899999999999999999999998875 4567766555432 222 45678899999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHHHH-HHHHHHccCCCCCCcEEEEeeCCCCCCC----cCHHHHHHHhCchhhcCcceEE-EEEe
Q psy1315 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEKLLGLYELNNMHLYY-IQAT 166 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (202)
|++|+|||++++.++..+.. |+..+... ..+.|+++|+||+|+... ....+..... ...+++ ++++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 167 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC------QKLGCVAYIEA 167 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH------HHHTCSCEEEC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH------HhcCCCEEEEe
Confidence 99999999999999999744 44444432 457999999999999753 2333333332 223445 9999
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++|.|++++|++|.+.+.+++.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 168 SSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp BTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998876543
No 75
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.4e-31 Score=190.36 Aligned_cols=165 Identities=24% Similarity=0.292 Sum_probs=130.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++. ...+..+++.+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 356899999999999999999999998875 44566664442 22222 45678899999999888 7888999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
+|+|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA------TELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHHTSEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH------HHhCCeEEEECCCcCC
Confidence 99999999999999988888777665445589999999999997642 233333322 2335789999999999
Q ss_pred -CHHHHHHHHHHHHHHHH
Q psy1315 173 -GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 -~v~~l~~~l~~~~~~~~ 189 (202)
|++++|++|.+.+.+++
T Consensus 176 ~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 176 GNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhc
Confidence 99999999999887654
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=2.3e-31 Score=188.69 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--CCCccccccceeeEeecccccccceEEEEEEcCCCCC-chhhHHhhhcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-LRPLWKSYTRCTD 93 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~d 93 (202)
...+||+++|++|||||||+++|.+.. +....++.+.+.....+.+ ++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 3333444565554444444 56677889999999776 4556778888999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|||++++++|.....|+..+.......+.|+++|+||+|+..... ..+... ++...++++++|||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~------~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA------XAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH------HHHHTTCEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH------HHHHhCCceEEeccccC
Confidence 9999999999999999988887666543345799999999999965322 222111 11223568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|+++.+.+..++
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999886554
No 77
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.98 E-value=3.9e-31 Score=212.36 Aligned_cols=175 Identities=44% Similarity=0.776 Sum_probs=143.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
..+.++|+++|.+|+|||||+++|.+..+..+.+|.+.++..+.+ ..+.+.+|||||++.+...+..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEES-----SSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEe-----CCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 346799999999999999999999999888888888888776654 457899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHH
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
|+|||+++++++..+..|+..+.......++|+|+|+||+|+.+.....++...+..... ....+++++|||++|.|++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTC-CSSCEEEEECBTTTTBTHH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhh-hcCCeEEEEEECCCCCCHH
Confidence 999999999999999999998877655568999999999999887777777666654332 4467889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q psy1315 176 EGINELYQLILKKRKLQKTNK 196 (202)
Q Consensus 176 ~l~~~l~~~~~~~~~~~~~~~ 196 (202)
++|++|.+.+.++..+.++..
T Consensus 473 ~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp HHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhcCCCCCccc
Confidence 999999999887777665543
No 78
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=193.32 Aligned_cols=172 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+..+ ...+.. ++..+.+.+||+||++.+...+..+++++|
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC---------------CEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 3457899999999999999999999988775 3455554333 222322 456778999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--------CchhhcCcceE-EE
Q psy1315 94 GIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--------GLYELNNMHLY-YI 163 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--------~~~~~~~~~~~-~~ 163 (202)
++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+..... ....++...+. ++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999999987 455555443 3479999999999997653221111000 00111222344 89
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
++|||++|.|++++|++|.+.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999876654
No 79
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=9.6e-31 Score=186.81 Aligned_cols=163 Identities=28% Similarity=0.343 Sum_probs=130.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccc---------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKG--------------------------- 67 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------- 67 (202)
..+.++|+|+|++|+|||||+++|++..+. .+.++.+..+....+.. ....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 356899999999999999999999998875 45677776655554433 2222
Q ss_pred ----------eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 68 ----------INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 68 ----------~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
+.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+.... ..|+++|+||+|+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 789999999999999999999999999999999999999999888888776643 4999999999994
Q ss_pred CC-CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 138 PN-AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.. .....+..... ...+++++++||+++.|++++|++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQVDILEVQKYA------QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCSCHHHHHHHH------HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 32 23344444433 23456999999999999999999999988754
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-31 Score=190.73 Aligned_cols=167 Identities=27% Similarity=0.364 Sum_probs=131.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+|+|++|||||||+++|.+..+. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 3567899999999999999999999988875 55677776665555544 455688999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ......... ...+++++++||+++.
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA------KELGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHHHH------HHHTCCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHHHH------HHcCCEEEEEeCCCCC
Confidence 999999999999999888888777654 34478999999999995332 223333322 2234689999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLILKKR 189 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~ 189 (202)
|++++|++|.+.+.++.
T Consensus 168 gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 168 NVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=8.5e-31 Score=185.28 Aligned_cols=168 Identities=22% Similarity=0.325 Sum_probs=120.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
...+.++|+++|++|||||||+++|.+..+. .+.++.+.... ..+.. ++..+.+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEE-TTEEEEEEEEECCC-----------CTTCS
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3457799999999999999999999988765 33444443332 22222 455678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC-cCHHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA-IQIKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
++++|||++++.++..+..|+..+.......+.|+++|+||+|+... ....+..... ...+++++++||+++.
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA------KSYGIPFIETSAKTRQ 168 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHHTCCEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH------HHcCCeEEEEeCCCCC
Confidence 99999999999999998888877766544457999999999999763 2333444332 2234689999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy1315 173 GLHEGINELYQLILKKRK 190 (202)
Q Consensus 173 ~v~~l~~~l~~~~~~~~~ 190 (202)
|+++++++|.+.+.+.+.
T Consensus 169 gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 169 GVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999876543
No 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=7.2e-31 Score=181.23 Aligned_cols=161 Identities=21% Similarity=0.306 Sum_probs=127.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEE
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIF 97 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~il 97 (202)
.++|+++|++|+|||||++++.+..+. ...++.+... ...... ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 589999999999999999999988775 3445544332 222222 4556789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHH
Q psy1315 98 VIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|||++++.++..+..|+..+.......+.|+++|+||+|+.... ......... ...+++++++||+++.|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHHTCCEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH------HHcCCeEEEecCCCCCCHHH
Confidence 99999999999988888777665444589999999999997632 333333322 23356899999999999999
Q ss_pred HHHHHHHHHHH
Q psy1315 177 GINELYQLILK 187 (202)
Q Consensus 177 l~~~l~~~~~~ 187 (202)
++++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 83
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=2.2e-31 Score=191.53 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=126.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+..+. ..+.. ++..+.+.+||+||++.+..++..+++++|++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 46799999999999999999999988875 45667664442 22223 55678999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc----------CHHHHHHHhCchhhcCcce-EEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI----------QIKQIEKLLGLYELNNMHL-YYI 163 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~-~~~ 163 (202)
|+|||++++.++..+. .|+..+... .++.|+++|+||+|+.+.. ...+..... ...+ .++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~ 156 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR------KQIGAAAY 156 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH------HHHTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH------HHcCCceE
Confidence 9999999999999987 566555543 2489999999999986542 222222221 2223 489
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
+++||++|.|++++|++|.+.+.+.+.+.
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC----
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999987665433
No 84
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2.1e-31 Score=190.80 Aligned_cols=167 Identities=14% Similarity=0.203 Sum_probs=99.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeeccccccc--ceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIGKCK--GINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
...++|+|+|++|||||||+++|.+. .+. .+.+|.+.......+.. ++. .+.+.+||+||++.+...+..++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 46789999999999999999999988 664 55677764444444433 344 7899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCC--CCCCcEEEEeeCCCCCC-C--cCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNVPILILANKQDLPN-A--IQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
+|++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.. . ....+..... ...+++++++
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~------~~~~~~~~~~ 170 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA------TTNTLDFFDV 170 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH------HHTTCEEEEC
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH------HHcCCEEEEe
Confidence 9999999999999999999988887776532 25899999999999976 3 2233444432 2335789999
Q ss_pred eeec-CCCHHHHHHHHHHHHHHHHh
Q psy1315 167 CAIT-GDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 167 Sa~~-~~~v~~l~~~l~~~~~~~~~ 190 (202)
||++ +.|++++|++|.+.+.++..
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp CC-------CHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999998876654
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=4.5e-32 Score=196.35 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=139.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.......+||+++|++|||||||+++|+.+.+. .+.++.+.+........ +...+.+.+|||||++.+...+..++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 345668899999999999999999997766654 55788888888877766 5677899999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|+.+....... ..+....++++++|||++|
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKS------IVFHRKKNLQYYDISAKSN 159 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGG------CCHHHHHTCEEEECBGGGT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHH------HHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999998888887765 248999999999999765432211 1222345678999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+....
T Consensus 160 ~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp BTTTHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
No 86
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=185.02 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=125.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
+.++|+++|++|+|||||++++.+..+. .+.++.+.++.... .. +...+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI-SC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEE-EE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEE-EE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 5789999999999999999999988775 44566665443322 22 455678999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
+|||++++.++.....|+..+.... ...+.|+++|+||+|+..... ....... ....+++++++||++|.|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL------ARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH------HHHHTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH------HHHhCCeEEEecCCCCcC
Confidence 9999999999988888876665432 224789999999999965433 2222222 123457899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILK 187 (202)
Q Consensus 174 v~~l~~~l~~~~~~ 187 (202)
++++|++|.+.+.+
T Consensus 154 i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 154 VKELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886643
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=185.45 Aligned_cols=161 Identities=24% Similarity=0.240 Sum_probs=125.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.+..++|+++|++|||||||+++|.+..+. .+.+|.+..+. ..+.. ++..+.+.+||+||++++...+..+++++|+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 347899999999999999999999988775 44666654442 22222 4566899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCc--------------CHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAI--------------QIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||+++++++..+. .|+..+... ..+.|+++|+||+|+.... ...+.... +...
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~ 164 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL------AKEI 164 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH------HHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH------HHHc
Confidence 99999999999999887 566555543 3489999999999997642 12222221 1222
Q ss_pred eE-EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 LY-YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+. ++++|||++|.|++++|++|.+.+.
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 33 7999999999999999999998765
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=4.4e-30 Score=184.94 Aligned_cols=167 Identities=25% Similarity=0.292 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh-hHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP-LWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||+++|.+..+....++.......+.+. ....+.+.+|||||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN--NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS--STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEec--CCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4568999999999999999999999988876656555555554441 22268899999999999887 88899999999
Q ss_pred EEEEEeCCCch-hHHHHHHHHHHHHcc--CCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch------------------
Q psy1315 95 IIFVIDSTDVE-RMEEVKIELIKTIKN--NDNFNVPILILANKQDLPNAIQIKQIEKLLGLY------------------ 153 (202)
Q Consensus 95 ~ilv~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------------------ 153 (202)
+|+|||+++.. ++.....++...... ....+.|+++|+||+|+............+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998853 466666666655432 123478999999999998765544332221100
Q ss_pred ------------hhcC-c--ceEEEEEeeeecC------CCHHHHHHHHHHH
Q psy1315 154 ------------ELNN-M--HLYYIQATCAITG------DGLHEGINELYQL 184 (202)
Q Consensus 154 ------------~~~~-~--~~~~~~~~Sa~~~------~~v~~l~~~l~~~ 184 (202)
.++. . .++++++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0001 1 1789999999999 9999999999875
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.2e-30 Score=183.77 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=124.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++|+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. +...+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 456899999999999999999999998875 44666664442 23333 5567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcCcc
Q psy1315 95 IIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 159 (202)
+|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+... ....+..... ...
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~ 153 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA------KQI 153 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------HHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH------HHc
Confidence 9999999999999988 4565555443 347999999999999742 1222222221 222
Q ss_pred -eEEEEEeeee-cCCCHHHHHHHHHHHHHH
Q psy1315 160 -LYYIQATCAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 160 -~~~~~~~Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
..++++|||+ ++.|++++|+.+.+.+.+
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 3689999998 689999999999988753
No 90
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=187.24 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=125.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCT 92 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 92 (202)
...+..+||+++|++|||||||+++|.+..+. .+.++.+..+. ..+.. +...+.+.+||+||++.+...+..+++++
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 34567899999999999999999999998876 34666665442 23333 55678999999999999999999999999
Q ss_pred CEEEEEEeCCCchhHHHH-HHHHHHHHccCCCCCCcEEEEeeCCCCCCC--------------cCHHHHHHHhCchhhcC
Q psy1315 93 DGIIFVIDSTDVERMEEV-KIELIKTIKNNDNFNVPILILANKQDLPNA--------------IQIKQIEKLLGLYELNN 157 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~ 157 (202)
|++|+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+... ....+..... .
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~ 172 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA------K 172 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------H
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH------H
Confidence 999999999999999988 4565555443 347999999999999642 1222222221 2
Q ss_pred cc-eEEEEEeeee-cCCCHHHHHHHHHHHHHH
Q psy1315 158 MH-LYYIQATCAI-TGDGLHEGINELYQLILK 187 (202)
Q Consensus 158 ~~-~~~~~~~Sa~-~~~~v~~l~~~l~~~~~~ 187 (202)
.. ..++++|||+ ++.|++++|+.|.+.+.+
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 22 3689999998 689999999999988764
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3.2e-30 Score=184.02 Aligned_cols=167 Identities=22% Similarity=0.217 Sum_probs=123.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
....++|+++|++|||||||++++.+..+. .+.++.+..+... +.. ++..+.+.+||+||++.+...+..+++++|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 356899999999999999999999998875 4456666544322 222 4566889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcCcceE-EEE
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNNMHLY-YIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~ 164 (202)
+|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+...... ...++...+. +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999884 444444332 34799999999999976422111100000 0011122233 899
Q ss_pred EeeeecCCCHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++||++|.|++++|++|.+.+.
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998765
No 92
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=1.2e-30 Score=183.70 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=124.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.... ..... ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 35799999999999999999999988775 44566554332 22222 45678899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh-----C---chhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL-----G---LYELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-----~---~~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+..... . ...++...+. ++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 9999999999999887 455555443 2389999999999996542111100000 0 0011122343 8999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++|+++.+.+.+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCC
T ss_pred ecCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988643
No 93
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.2e-33 Score=199.34 Aligned_cols=169 Identities=27% Similarity=0.332 Sum_probs=124.1
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC 91 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 91 (202)
.+.....++|+|+|++|||||||+++|.+..+. .+.++.+.+.....+.. ++..+.+.+||+||++.+...+..++++
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 344567899999999999999999999988775 34566666665555544 4566889999999999999999999999
Q ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+........ .....++...+++++++||+++
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTTCCBCCCCC---
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCH----HHHHHHHHHcCCeEEEEECCCC
Confidence 99999999999999999998888777554 445899999999999965432110 0011222344578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILK 187 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~ 187 (202)
.|++++|++|.+.+.+
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999877653
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.2e-31 Score=186.28 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=129.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.....++|+++|++|||||||+++|.+..+. .+.++.+.++... ... +...+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEE-EEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEE-EEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 3456899999999999999999999988775 4456666444332 222 456678999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAI-QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++|+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.... ......... ...+++++++||++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA------QEWKCAFMETSAKMN 155 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH------HHHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH------HHhCCeEEEEecCCC
Confidence 99999999999999988877765544311 2478999999999997532 233333322 234568999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLILKKR 189 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~ 189 (202)
.|++++|++|.+.+.+++
T Consensus 156 ~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 156 YNVKELFQELLTLETRRN 173 (199)
T ss_dssp BSHHHHHHHHHHHCSSSC
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999886553
No 95
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.8e-30 Score=185.80 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=121.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
..+.++|+++|++|||||||++++.+..+. .+.++.+..+ ...... ++..+.+.+||+||++.+...+..+++++|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 357899999999999999999999988775 4455554322 223323 5667888999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--------chhhcC-cceEEEE
Q psy1315 95 IIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG--------LYELNN-MHLYYIQ 164 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~ 164 (202)
+|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+...... ...++. ....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999987 455555443 25899999999999976532211111000 001111 2235799
Q ss_pred EeeeecCCCHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
++||++|.|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=3.2e-30 Score=183.37 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=118.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH---Hhhhc
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW---KSYTR 90 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---~~~~~ 90 (202)
...++.+||+++|++|||||||++++.+............+..........+..+.+.+||+||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 456789999999999999999999888754433333333333333332223567899999999999987776 89999
Q ss_pred CCCEEEEEEeCCCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcC----cce
Q psy1315 91 CTDGIIFVIDSTDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNN----MHL 160 (202)
Q Consensus 91 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~ 160 (202)
++|++|+|||++++ +++..+..|+...... ..+.|+++|+||+|+...... ..+..... ..++. ..+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~ 171 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAN-DDLADAGLEKLH 171 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHH-HHHHHTTCTTSC
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHH-HHHHHhhhhcCC
Confidence 99999999999987 6667767677665432 348999999999998763211 11111110 11222 567
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+++++|||++ .|++++|+.+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998764
No 97
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=6.9e-31 Score=184.35 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=113.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
.+.++|+++|++|+|||||++++.+..+. .+.++.+..+.. .... ++..+.+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC--------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 46799999999999999999999988765 445655533321 2222 45567888999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC------------HHHHHHHhCchhhcCcce-E
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ------------IKQIEKLLGLYELNNMHL-Y 161 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~ 161 (202)
++|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+... ..+.... +...+ .
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~ 155 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL------KKLIGAP 155 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH------HHHHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH------HHHcCCC
Confidence 9999999999999987 455555443 23899999999999865432 1222221 12234 3
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
++++|||++|.|++++|++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988764
No 98
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.6e-30 Score=182.88 Aligned_cols=168 Identities=22% Similarity=0.236 Sum_probs=121.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++|+++|++|||||||+++|.+..+. .+.++.+..+... ... ++..+.+.+||+||++.+...+..+++++|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 46789999999999999999999998876 3456665544322 222 45568899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc--------hhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL--------YELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+....... ..++...+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 9999999999999884 454444432 347999999999999754221111110000 011112233 8999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++|++|.+.+.+.
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=1.6e-29 Score=176.72 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=118.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDG 94 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 94 (202)
.++.++|+++|++|||||||+++|.+..+.. ..++.+.+.....+ ......+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQV---TVNDKKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEE---EETTEEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEE---EeCCceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 4578999999999999999999999887753 33444433333333 2234578899999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCcc--eEEEEEeeeecC
Q psy1315 95 IIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNMH--LYYIQATCAITG 171 (202)
Q Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~Sa~~~ 171 (202)
+|+|+|++++...... ..+..... .+.|+++|+||+|+.... .......+.. ..+.... .++++++||++|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 9999999874322222 22223322 278999999999997642 2333332221 1222222 379999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy1315 172 DGLHEGINELYQLILKKRK 190 (202)
Q Consensus 172 ~~v~~l~~~l~~~~~~~~~ 190 (202)
.|++++|++|.+.+...+.
T Consensus 156 ~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhhhhhcc
Confidence 9999999999998876554
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=7.8e-30 Score=179.63 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=118.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC--CCC-CccccccceeeEeecccc--cccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD--QYL-NTVPTIGFNCEKVKGQIG--KCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
.+||+++|++|||||||+++|.+. .+. .+.+|.+..+....+... +...+.+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 343 456777877666555321 235678999999999988889999999999
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE----EEEEeee
Q psy1315 94 GIIFVIDSTDV-ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY----YIQATCA 168 (202)
Q Consensus 94 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa 168 (202)
++++|||++++ .++..+..|+..+... ..+.|+++|+||+|+.+............ ..++...++ +++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKIT-KELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHH-HHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHH-HHHHHhcCCcchhheEEEec
Confidence 99999999987 5788888888777654 24789999999999976533221100000 112222233 4999999
Q ss_pred ecCC-CHHHHHHHHHHHHHHHH
Q psy1315 169 ITGD-GLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~-~v~~l~~~l~~~~~~~~ 189 (202)
+++. |++++++.|.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9996 99999999998876544
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=3.9e-28 Score=176.45 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=114.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC------CCc--
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------EKL-- 81 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------~~~-- 81 (202)
+.++....+.++|+|+|++|||||||+++|++..+. ..+..+.+........ ......+.+|||||. +..
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~ 97 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHF-DHKLNKYQIIDTPGLLDRAFENRNTI 97 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEE-EETTEEEEEEECTTTTTSCGGGCCHH
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeee-ecCCCeEEEEECCCCcCcccchhhhH
Confidence 344555567899999999999999999999988764 2222222222221111 234578999999998 331
Q ss_pred -hhhHHhhhcCCCEEEEEEeCCCchhHHH--HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH-HHHhCchhhcC
Q psy1315 82 -RPLWKSYTRCTDGIIFVIDSTDVERMEE--VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI-EKLLGLYELNN 157 (202)
Q Consensus 82 -~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~ 157 (202)
...+..++..+|++|+|||++++.++.. ...|+..+... ..+.|+++|+||+|+.+....... .... ..+..
T Consensus 98 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~~~ 173 (228)
T 2qu8_A 98 EMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLI--KQILD 173 (228)
T ss_dssp HHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHH--HHHHH
T ss_pred HHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHH--HHHHH
Confidence 1223445788999999999998877642 23444444432 347999999999999764332211 1111 11212
Q ss_pred cce--EEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 158 MHL--YYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 158 ~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
..+ +++++|||++|.|++++|++|.+.+.+++.
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 174 NVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 233 789999999999999999999999876654
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=5.7e-31 Score=188.28 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++|||||||+++|.+..+. .+.++.+... ...... ++..+.+.+||+||++++...+..+++++|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 57899999999999999999999988775 3345544332 222222 45667888999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH--------HHHhCchhhcCcceE-EEEE
Q psy1315 96 IFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI--------EKLLGLYELNNMHLY-YIQA 165 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~ 165 (202)
|+|||++++.++.... .|+..+... ..+.|+++|+||+|+.......+. ........++...+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999887 454444332 237899999999999754211100 000111122334455 8999
Q ss_pred eeeecCCCHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~ 185 (202)
+||++|.|++++|++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998764
No 103
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=4.4e-28 Score=172.70 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=128.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
...++|+++|++|||||||++++.+..+. .+.++.+.......+.+ ++..+.+.+||++|++.+...+..+++.++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 45799999999999999999999998775 45677776655544444 55678899999999998888889999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecCCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
++|||+++..++..+..|+..+... ...+.|+++|+||+|+.+.. ......... ...++.++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNNLSFIETSALDSTN 154 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCeEEEEeCCCCCC
Confidence 9999999998988887777655443 23478999999999996532 233333322 33457899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1315 174 LHEGINELYQLILKKR 189 (202)
Q Consensus 174 v~~l~~~l~~~~~~~~ 189 (202)
++++|++|.+.+.+..
T Consensus 155 i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 155 VEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-29 Score=184.59 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=118.8
Q ss_pred hcCCCcccEEEEEcCC---------CCCHHHHHHHhhcC---CCC-Cccccc-cceeeEeeccc-------------ccc
Q psy1315 13 QASGSSSVHIVMLGLD---------SAGKTTALYRLKFD---QYL-NTVPTI-GFNCEKVKGQI-------------GKC 65 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~---------~~GKssL~~~l~~~---~~~-~~~~~~-~~~~~~~~~~~-------------~~~ 65 (202)
.+.....+||+++|.+ |||||||+++|.+. .+. .+.++. +..+....+.. .++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 4456788999999999 99999999999984 442 334443 33322222211 135
Q ss_pred cceEEEEEE-----------------------cCCCCCchhhHHhhhc---------------------CCCEEEEEEeC
Q psy1315 66 KGINFLIWD-----------------------VGGQEKLRPLWKSYTR---------------------CTDGIIFVIDS 101 (202)
Q Consensus 66 ~~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~ 101 (202)
..+.+.+|| ++|++++..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6677777777777776 79999999999
Q ss_pred CCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 102 TDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 102 ~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
+++ .+++.+..|+..+.......+.|+++|+||+|+.......+...... ...+++++++||++|.|++++|+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL-----SKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH-----TSSSCCEEECBTTTTBSHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH-----hcCCCeEEEEECCCCCCHHHHHH
Confidence 998 89999998887776542234799999999999975433333322211 12367899999999999999999
Q ss_pred HHHHHHH
Q psy1315 180 ELYQLIL 186 (202)
Q Consensus 180 ~l~~~~~ 186 (202)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
No 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=4.6e-28 Score=185.14 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=126.8
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhh
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSY 88 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 88 (202)
+.+.......++|+++|++|+|||||++++.+..+. .+.++.+.... ..+.. ++..+.+.+||+||++.+...+..+
T Consensus 146 ~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~ 223 (332)
T 2wkq_A 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPVNLGLWDTAGLEDYDRLRPLS 223 (332)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEE-TTEEEEEEEEEECCCGGGTTTGGGG
T ss_pred ccchhcccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEE-CCEEEEEEEEeCCCchhhhHHHHHh
Confidence 334445667899999999999999999999988775 44555554332 22222 4567788899999999999999999
Q ss_pred hcCCCEEEEEEeCCCchhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HHHHHHHhCch
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IKQIEKLLGLY 153 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~~~~~~~~~~ 153 (202)
++++|++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+..... ..+....
T Consensus 224 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~---- 297 (332)
T 2wkq_A 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM---- 297 (332)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH----
T ss_pred ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHH----
Confidence 99999999999999999999887 455444443 23899999999999865321 1112221
Q ss_pred hhcCcceE-EEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 154 ELNNMHLY-YIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 154 ~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+...+. ++++|||++|.|++++|++|.+.+.+
T Consensus 298 --~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 298 --AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp --HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred --HHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 122343 89999999999999999999988753
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=3e-28 Score=169.74 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=107.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccccee--eEeecccccccceEEEEEEcCCCCCchhh--------HHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC--EKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~ 87 (202)
+.++|+++|++|||||||+++|.+..+....+..+.+. ....+ ..+...+.+|||||..++... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI---HIDGMPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE---EETTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEE---EECCeEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 46899999999999999999999876543333333222 22222 223456899999998653211 224
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++++|+|++++.++.. ..|+..+... ...+.|+++|+||+|+.+... .+....+.+++++|
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~S 146 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLS 146 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECC
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----------hhhhccCCceEEEe
Confidence 5789999999999998887763 3455555443 334799999999999854211 11223467899999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++|++|.+.+..
T Consensus 147 A~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887643
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=9.2e-28 Score=180.43 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=115.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCC----ccccccceeeEeecccccccceEEEEEEcCCCCCchh---hHHhhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLN----TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP---LWKSYTRCTD 93 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~d 93 (202)
||+++|+.|||||||++++.++.++. ..+|.|.....+ ...+.+++|||+|++++.. .+..|+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v------~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF------STLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE------CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE------ccEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999888765443 457777666543 1347899999999999964 4689999999
Q ss_pred EEEEEEeCCCc--hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhcCc----ceEEE
Q psy1315 94 GIIFVIDSTDV--ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELNNM----HLYYI 163 (202)
Q Consensus 94 ~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~----~~~~~ 163 (202)
++|+|||++++ +.+.....|+..+... .++.|+++|+||+|+..+... ..+..... ..++.. .+++|
T Consensus 75 ~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~-~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 75 ALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTG-EELLELGLDGVQVSF 151 (331)
T ss_dssp EEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHH-HTTSSSSCSCCCEEE
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHH-HHHHhhcccccCceE
Confidence 99999999987 2222222233333222 348999999999999865332 12221111 123332 57999
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++|||++ .||.++|..+++.+..+....
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~l 179 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELSFL 179 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHHHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHHHH
Confidence 9999987 699999999999877554433
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.1e-27 Score=169.94 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~ 84 (202)
....++|+++|++|||||||+++|++..+ ..+.++.+.+.....+.. + ..+.+||||| ++.+...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-N---DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-T---TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-C---CcEEEEECCCCCccccCHHHHHHHHHH
Confidence 45689999999999999999999999875 455666666665544433 1 2589999999 5666777
Q ss_pred HHhhhcCC---CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE
Q psy1315 85 WKSYTRCT---DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 85 ~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
+..+++.+ |++++|+|++++.++.... .+..+.. .+.|+++|+||+|+............+. ..+....+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~ 169 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVR-QTLNIDPED 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHH-HHHTCCTTS
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHH-HHHcccCCC
Confidence 78888777 9999999999877766532 1222222 3789999999999987654433222221 112234567
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+++++||++|.|++++|++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999988763
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=9.7e-28 Score=166.04 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=103.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~ 90 (202)
+.++|+++|++|||||||+++|.+..+. ...|+.+.......+ ......+.+|||||++.+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF---EYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEE---EETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEE---EECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 3589999999999999999999987653 223332222222222 2235689999999988764 34466664
Q ss_pred --CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEee
Q psy1315 91 --CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 91 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++|++++|+|+++.+. ...|+..+... +.|+++|+||+|+....... +.+. ++...+++++++|
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~S 145 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVDK------LEKILGVKVVPLS 145 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCCCHHH------HHHHHTSCEEECB
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHhc----CCCEEEEEEchHhccccChhhHHHH------HHHHhCCCEEEEE
Confidence 7999999999987543 33455555442 78999999999985322110 1111 1122346899999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|++|.|++++|+++.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 110
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=4.2e-27 Score=166.62 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=129.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTD 93 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 93 (202)
..+..++|+++|++|||||||++++.+..++ .+.++.+..+....+.. ++..+.+.+||++|.+++...+..+++.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 4566799999999999999999999998875 56777777666555544 556678889999999998889999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc--CHHHHHHHhCchhhcCcceEEEEEeeeecC
Q psy1315 94 GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI--QIKQIEKLLGLYELNNMHLYYIQATCAITG 171 (202)
Q Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (202)
++++|+|+.+..+++.+..|+..+... .....|+++|+||+|+.+.. ........ ....++.++++||+++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l------~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF------AEKNGLSFIETSALDS 176 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH------HHHTTCEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH------HHHcCCEEEEEeCCCC
Confidence 999999999988888877777655432 23478999999999996532 23333332 2334578899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|+.|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 111
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2e-27 Score=168.37 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhhH
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPLW 85 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~ 85 (202)
....++|+++|++|||||||+++|++..+....++.+.+........ ...+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 45678999999999999999999999887777777776665544322 23578999999 55566777
Q ss_pred HhhhcCC---CEEEEEEeCCCchhHHH--HHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcce
Q psy1315 86 KSYTRCT---DGIIFVIDSTDVERMEE--VKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL 160 (202)
Q Consensus 86 ~~~~~~~---d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (202)
..+++.+ |++++|+|+++..+... ...|+.. . +.|+++|+||+|+.+............. .......
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 167 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L----NIPFTIVLTKMDKVKMSERAKKLEEHRK-VFSKYGE 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T----TCCEEEEEECGGGSCGGGHHHHHHHHHH-HHHSSCC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c----CCCEEEEEEChhcCChHHHHHHHHHHHH-HHhhcCC
Confidence 7777766 99999999986543332 2223222 1 6899999999999866544433332221 1112245
Q ss_pred EEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 161 YYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 161 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
++++++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999988753
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1.7e-27 Score=163.75 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRCT 92 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 92 (202)
.+|+++|++|+|||||++++.+..+....+..+.+........ ......+.+||+||... +...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVV-ETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEE-EETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEE-EeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 5899999999999999999998875433333333222222211 23445899999999876 345677788999
Q ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEeeeecC
Q psy1315 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATCAITG 171 (202)
Q Consensus 93 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 171 (202)
|++|+|+|++++.+... .++...... .+.|+++|+||+|+.+.. .... .+. ..+. +++++||++|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~------~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG------PLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG------GGG-GGSSCSCEECBTTTT
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHH------HHH-hCCCCCeEEEecccC
Confidence 99999999987544322 233333222 278999999999987541 1111 121 2233 6899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy1315 172 DGLHEGINELYQLI 185 (202)
Q Consensus 172 ~~v~~l~~~l~~~~ 185 (202)
.|++++|+++.+.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998754
No 113
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.95 E-value=8.1e-28 Score=189.96 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=123.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCC----------CCchhhHH-
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ----------EKLRPLWK- 86 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~- 86 (202)
..++|+++|++|||||||+|+|++..+....+..+++.......+ ......+.+|||||+ +.+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEE-EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEE-EECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 569999999999999999999999876544444455544433322 334557999999996 44444433
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH--HHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI--KQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++.+|++|+|+|++++.+++.. .|+..+... +.|+++|+||+|+.+.... .+....+. ..+......+++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~----~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 326 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA----GKAVVIVVNKWDAVDKDESTMKEFEENIR-DHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT----TCEEEEEEECGGGSCCCTTHHHHHHHHHH-HHCGGGTTSCEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc----CCcEEEEEECccCCCcchHHHHHHHHHHH-HhcccCCCCCEE
Confidence 478889999999999988887765 355544433 7999999999999765432 22322221 122233467899
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
++||++|.|++++|+.+.+.+.+...+.+++.+|+
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~ 361 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLND 361 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 99999999999999999999998887777777664
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.9e-27 Score=179.89 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=119.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC----CccccccceeeEeecccccccceEEEEEEcCCCCCc-----hhhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL----NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-----RPLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~ 88 (202)
..+||+++|++|||||||++++++.... ...+|.+.......+ .+.+.+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF----LGNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE----TTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe----CCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 4689999999999999999999987433 345666665555443 24789999999999887 6788899
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHH---HHHccCCCCCCcEEEEeeCCCCCCCcCHH----HHHHHhCchhhcCcc--
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELI---KTIKNNDNFNVPILILANKQDLPNAIQIK----QIEKLLGLYELNNMH-- 159 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~-- 159 (202)
++++|++|+|||++++++++.+..|.. .+... .++.|+++|+||+|+.+..... ...... ..++...
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~--~~~~~~~g~ 153 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNL--SETSSEFGF 153 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH--HHHHHTTTC
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHH--HHHHHHcCC
Confidence 999999999999999999998866543 33322 4479999999999998732222 111111 1222233
Q ss_pred -eEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 -LYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 -~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
.+++++|||++ .|+.++|..+++.+.
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 47999999999 899999999887654
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=8.7e-27 Score=176.25 Aligned_cols=166 Identities=20% Similarity=0.193 Sum_probs=124.3
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeeccccccc-ceEEEEEEcCCCCCch----------
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK-GINFLIWDVGGQEKLR---------- 82 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~---------- 82 (202)
+...+.-.|+++|.+|||||||+|+|++..+....+..+++........ ... ...+.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~-~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK-NIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-EETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEE-ecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 4566788999999999999999999999988766666666655544433 334 7889999999985543
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC-CCcCHHHHHHHhCchhhcCcceE
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP-NAIQIKQIEKLLGLYELNNMHLY 161 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
.....+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+. ...........+.. . .....
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----~~pvilV~NK~Dl~~~~~~~~~~~~~l~~-~--~~~~~ 156 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----NKPVIVVINKIDKIGPAKNVLPLIDEIHK-K--HPELT 156 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----CCCEEEEEECGGGSSSGGGGHHHHHHHHH-H--CTTCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----CCCEEEEEECccCCCCHHHHHHHHHHHHH-h--ccCCC
Confidence 56778889999999999999888888766556655543 78999999999997 43333332222211 0 11346
Q ss_pred EEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 162 YIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
+++++||++|.|++++++++.+.+.+
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 79999999999999999999987743
No 116
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=5.2e-27 Score=169.80 Aligned_cols=167 Identities=17% Similarity=0.090 Sum_probs=114.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCC----------Cchhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE----------KLRPL 84 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~ 84 (202)
....++|+|+|.+|+|||||+++|++..+ ....++.+.+...............+.+|||||.. .+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45689999999999999999999999873 44555555555544433322455789999999943 33555
Q ss_pred HHhhhcC---CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcC----
Q psy1315 85 WKSYTRC---TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN---- 157 (202)
Q Consensus 85 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 157 (202)
+..+++. +|++++|+|+++..+.. ...++..+.. .+.|+++|+||+|+............+.. .+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQK-SLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHH-HHHhhhhc
Confidence 6666665 78899999998653322 2223333333 27899999999999875433222221111 1111
Q ss_pred --cceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 158 --MHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 158 --~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
....+++++||++|.|+++++++|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3678999999999999999999999988654
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=4.8e-27 Score=173.42 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=111.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhh-
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYT- 89 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~- 89 (202)
.+.++|+++|++|||||||+++|.+..+. .....|++.......+ ......+.+||+||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45789999999999999999999987754 2223354544444333 44568999999999877654 335555
Q ss_pred -cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 -RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 -~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
..+|++++|+|+++.++... ++..+... +.|+++|+||+|+........ ....+....+++++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~---~~~~l~~~----~~pvilv~NK~Dl~~~~~i~~-----~~~~l~~~lg~~vi~~SA 148 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY---LLLEILEM----EKKVILAMTAIDEAKKTGMKI-----DRYELQKHLGIPVVFTSS 148 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH---HHHHHHTT----TCCEEEEEECHHHHHHTTCCB-----CHHHHHHHHCSCEEECCT
T ss_pred hcCCCEEEEEeCCCchhhHHH---HHHHHHhc----CCCEEEEEECcCCCCccchHH-----HHHHHHHHcCCCEEEEEe
Confidence 58999999999998665433 44444443 799999999999854321110 011122234578999999
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLIL 186 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~ 186 (202)
++|.|++++|+++.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998764
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=2.4e-27 Score=167.35 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=108.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCC-----------CCCchhhHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG-----------QEKLRPLWKS 87 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~ 87 (202)
++|+++|++|||||||++++.+..+. .+.+ +.+.....+.. . .+.+||||| ++.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEW-K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEE-T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEec-C----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999988765 2333 33333333322 1 689999999 5566777778
Q ss_pred hhcC-CCEEEEEEeCCCchhHHHHH-HHHHH--------HHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhh-c
Q psy1315 88 YTRC-TDGIIFVIDSTDVERMEEVK-IELIK--------TIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYEL-N 156 (202)
Q Consensus 88 ~~~~-~d~~ilv~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~ 156 (202)
+++. ++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... ....+........ .
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCG
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhh
Confidence 8877 77777777777777887763 33321 1111122379999999999997654 2222222111110 0
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
.....++++|||++|.|++++|++|.+.+.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 0113468999999999999999999998876543
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.2e-26 Score=163.61 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=111.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~ 90 (202)
+.++|+++|++|||||||+++|.+..+. ...++.........+ ......+.+|||||++.+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF---EYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE---EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEE---EeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 5789999999999999999999987543 233433333333333 3345789999999988764 45666664
Q ss_pred --CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEee
Q psy1315 91 --CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 91 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
.+|++++|+|.++ ++....|+..+... +.|+++|+||+|+....... ... .+....+++++++|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVD------KLEKILGVKVVPLS 149 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT----TCCEEEEEECHHHHHHTTCCCCHH------HHHHHHTSCEEECB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc----CCCEEEEEEhhhccccccchHHHH------HHHHHhCCCeEEEE
Confidence 4999999999964 55555666665542 78999999999985432111 111 11122346899999
Q ss_pred eecCCCHHHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~~~ 189 (202)
|+++.|++++|+++.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999886654
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.1e-25 Score=169.38 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=113.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--------chhhHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--------LRPLWKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~ 88 (202)
.+..+|+++|.+|+|||||+|+|++..+....+..+++........ ......+.+|||||... +......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~-~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL-TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE-EeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 3566899999999999999999999887655444444444333222 34577899999999776 45567788
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++++|+|++++.+.. ..|+...+... ..+.|+++|+||+|+...... +...+. .+ ....+++++||
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~--~~~~~~--~~--~~~~~~~~iSA 154 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE--AMKAYH--EL--LPEAEPRMLSA 154 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH--HHHHHH--HT--STTSEEEECCT
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH--HHHHHH--Hh--cCcCcEEEEeC
Confidence 99999999999998764433 34554444432 247899999999999764330 112111 11 22346899999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++++.|.+.+
T Consensus 155 ~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 155 LDERQVAELKADLLALM 171 (301)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 121
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=1.6e-26 Score=183.59 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=121.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC----------CCCchhhHH
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG----------QEKLRPLWK 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~ 86 (202)
...++|+++|.+|+|||||+++|.+.......+..+++.......+ ......+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEE-EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEE-EECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4679999999999999999999998765434444444444332222 23445899999999 566666555
Q ss_pred -hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEE
Q psy1315 87 -SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 87 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (202)
.+++.+|++|+|+|+++..... ...++..+.. .+.|+++|+||+|+.+... ..+....+.. .+......++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPI 345 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHH-HCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHH-hcccCCCCCE
Confidence 4788999999999998643322 2223333333 2799999999999976433 2333333321 1112345789
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQKTNKMNK 199 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~ 199 (202)
+++||++|.|++++|+.+.+.+.+...+.++..+|+
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~ 381 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLND 381 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999999999998888888777765
No 122
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=5.9e-26 Score=183.61 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=113.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEee------cccc-cccceEEEEEEcCCCCCchhhHH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVK------GQIG-KCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
...+.+||+++|.+|||||||++++.+..+. .+.+|.+.+..... +... ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999998875 55678777766542 2121 23468999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEEE
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
.+++++|++|+|||+++.+ ....|+..+... ..+.|+++|+||+|+..... ........ ...+.+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~ 185 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERF------PAIENRFH 185 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHC------GGGTTCEE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHH------HhcCCceE
Confidence 9999999999999997654 344455555543 23689999999999976433 33344433 23345799
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++||++|.|++++++.+.+.+.+.
T Consensus 186 ~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 186 RISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ECCC-----CTTHHHHHHHHHTCT
T ss_pred EEecCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999999988654
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.3e-26 Score=170.75 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=107.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch------hhHHhhhc-
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR------PLWKSYTR- 90 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~- 90 (202)
..++|+++|++|||||||+++|.+.... ....+|++.......+ .. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~-~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLV-KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEEC-TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEE-ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3589999999999999999999987532 2222355554443333 33 6679999999988765 45666765
Q ss_pred -CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH-HHHHHhCchhhcCcceEEEEEeee
Q psy1315 91 -CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK-QIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 91 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
.+|++|+|+|+++.++.. .|...+... +.|+++|+||+|+....... ... .+....+++++++||
T Consensus 79 ~~~d~vi~V~D~t~~e~~~---~~~~~l~~~----~~p~ilv~NK~Dl~~~~~~~~~~~------~l~~~lg~~vi~~SA 145 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL---YLTTQLIET----GIPVTIALNMIDVLDGQGKKINVD------KLSYHLGVPVVATSA 145 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH---HHHHHHHHT----CSCEEEEEECHHHHHHTTCCCCHH------HHHHHHTSCEEECBT
T ss_pred CCCCEEEEEecCCchHhHH---HHHHHHHhc----CCCEEEEEEChhhCCcCCcHHHHH------HHHHHcCCCEEEEEc
Confidence 599999999998755443 344444432 78999999999985422111 111 111233568999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLI 185 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~ 185 (202)
++|.|++++|+++.+.+
T Consensus 146 ~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTBSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998865
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=9.6e-27 Score=171.55 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh----------hHHhhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP----------LWKSYT 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 89 (202)
.+|+++|.+|||||||+|+|.+.... ....++++........ ......+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEF-LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEE-EETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEE-EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988642 2223344433333222 33456899999999876653 556677
Q ss_pred --cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 90 --RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 90 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++|++|+|+|+++.++...+..+ +.. .+.|+++|+||+|+........... .+....+++++++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~-----~l~~~lg~~vi~~S 147 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTE-----KLESLLGCSVIPIQ 147 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHH-----HHHHHHCSCEEECB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHH-----HHHHHcCCCEEEEE
Confidence 889999999999876555443333 222 2789999999999854321111011 11123357899999
Q ss_pred eecCCCHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQL 184 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~ 184 (202)
|++|.|++++++++.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999775
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.6e-26 Score=172.10 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh----------hHHh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP----------LWKS 87 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~ 87 (202)
+.++|+++|.+|||||||+|+|++..+ ......|++.......+ ......+.+|||||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEE-ECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEE-EeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998874 23333444444433322 33456789999999876552 2333
Q ss_pred hh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
++ +.+|++|+|+|+++.++......++.. . +.|+++|+||+|+.......... ..+....++++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---~----~~p~ivv~NK~Dl~~~~~~~~~~-----~~l~~~lg~~~i~ 147 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLE---L----GIPCIVALNMLDIAEKQNIRIEI-----DALSARLGCPVIP 147 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH---H----TCCEEEEEECHHHHHHTTEEECH-----HHHHHHHTSCEEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHh---c----CCCEEEEEECccchhhhhHHHHH-----HHHHHhcCCCEEE
Confidence 33 789999999999876555444444333 2 78999999999985432111000 1111233578999
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+||++|.|+++++++|.+.+.
T Consensus 148 ~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 148 LVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CCCGGGHHHHHHHHHHHTCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987654
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=2.7e-24 Score=165.83 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=117.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCch---------hhHHh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------PLWKS 87 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~ 87 (202)
...++|+++|.+|||||||+++|.+.... .....+.+........ ......+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQF-EDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEE-EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEE-EecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 57899999999999999999999987642 1111111111111111 2345789999999964321 12223
Q ss_pred hhcCCCEEEEEEeCCCch--hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 88 YTRCTDGIIFVIDSTDVE--RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+............+ ...+.++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~~ 314 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFV------KEKGLNPIK 314 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHH------HHTTCCCEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHH------HhcCCCeEE
Confidence 445699999999998876 67777777776665422 79999999999997654333332222 124567999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHhhhhhhh
Q psy1315 166 TCAITGDGLHEGINELYQLILKKRKLQKTNK 196 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~ 196 (202)
+||++|+|+++++++|.+.+.....+.....
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~ 345 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRPLAEKVAREK 345 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHHHHhhhcchh
Confidence 9999999999999999999876655444433
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=9.2e-26 Score=162.74 Aligned_cols=153 Identities=23% Similarity=0.261 Sum_probs=102.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC---
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC--- 91 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--- 91 (202)
...+.++|+++|++|+|||||+++|.+..+....+....+. .. ......+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~---~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS---AA---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE---ET---TGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE---EE---EeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999887654221111111 11 1245678999999999998888888887
Q ss_pred -CCEEEEEEeCC-CchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCcCHHHHHHHhC--chhhcCcceEEEE
Q psy1315 92 -TDGIIFVIDST-DVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAIQIKQIEKLLG--LYELNNMHLYYIQ 164 (202)
Q Consensus 92 -~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 164 (202)
+|++|+|+|++ +++++.....|+..+.... ...+.|+++|+||+|+........+...+. ...+....+.+++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999 8889998888887776542 235899999999999987765443322211 1122223344566
Q ss_pred EeeeecCCC
Q psy1315 165 ATCAITGDG 173 (202)
Q Consensus 165 ~~Sa~~~~~ 173 (202)
++||+++.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 666666543
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.9e-25 Score=176.11 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=96.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhH--------Hh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLW--------KS 87 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~ 87 (202)
..+.++|+++|.+|+|||||+|+|.+.......+..+++.......+ ....+.+.+|||||...+...+ ..
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i-~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECF-IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEE-EETTEEEEEEC--------------------C
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEE-EECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34578999999999999999999998865444444455554433333 3456789999999987655433 44
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
+++.+|++|+|+|++++.++.....+. .+..... +.|+++|+||+|+........ +. +. .....+++++|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~-l~-----~~~~~~~i~vS 378 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIR-ELKAAHP--AAKFLTVANKLDRAANADALI-RA-IA-----DGTGTEVIGIS 378 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHCT--TSEEEEEEECTTSCTTTHHHH-HH-HH-----HHHTSCEEECB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHH-HHHHhcC--CCCEEEEEECcCCCCccchhH-HH-HH-----hcCCCceEEEE
Confidence 678899999999999887775322211 1222211 689999999999977644322 11 11 11125789999
Q ss_pred eecCCCHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLIL 186 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~ 186 (202)
|++|.|+++++++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=8.6e-25 Score=172.84 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=118.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh------------H
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL------------W 85 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------------~ 85 (202)
..++|+++|++|||||||+|++.+.......+..+++.......+ ......+.+|||||..+.... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i-~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV-FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE-EETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE-EECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 468999999999999999999998876545555555544333222 223447899999996432211 2
Q ss_pred HhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--HHHHHHHhCchhhcCcceEEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYI 163 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 163 (202)
..+++.+|++++|+|+++..+.... ++...... .+.|+++|+||+|+.+... ..+....+. ..+......++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 331 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFR-EKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHH-HHCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHH-HHhccCCCCcE
Confidence 3467789999999999876665542 22222222 2789999999999976432 233322221 11223345689
Q ss_pred EEeeeecCCCHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1315 164 QATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200 (202)
Q Consensus 164 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~ 200 (202)
+++||++|.|++++|+.+.+.+.+...+.+++.+|++
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~ 368 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSA 368 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 9999999999999999999999888888888887753
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=4.2e-25 Score=164.37 Aligned_cols=154 Identities=22% Similarity=0.222 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchh------hHHhhh--
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRP------LWKSYT-- 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~-- 89 (202)
+.++|+++|++|||||||+++|.+..+ ......+.+........ ......+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIM-EYREKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEE-EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEE-EECCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998876 33333333333332222 33556799999999877655 566666
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC----cCHHHHHHHhCchhhcCcceEEEEE
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEKLLGLYELNNMHLYYIQA 165 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.++|++++|+|+++.+ ....++..+... ...|+++|+||+|+... .....+. ...++++++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~---------~~lg~~~~~ 144 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMR---------KELGVPVIP 144 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHH---------HHHSSCEEE
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHH---------HHcCCcEEE
Confidence 6899999999998643 333444454443 13899999999997532 1222222 233578999
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q psy1315 166 TCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 166 ~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+||++|.|++++++.+.+.+...
T Consensus 145 ~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 145 TNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887543
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=8.9e-25 Score=172.61 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC--------CchhhHHhhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE--------KLRPLWKSYTR 90 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~ 90 (202)
.++|+++|.+|||||||+|+|.+..+..+.+++|++.+...... ......+.+|||||.+ .+..++..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC-TTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE-EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999999887767778888776665544 4456689999999975 56677888899
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeec
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (202)
.+|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+..... ... .+......+++++||++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~-----~~~---~~~~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA-----NIY---DFYSLGFGEPYPISGTH 148 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC----------CCC---SSGGGSSCCCEECBTTT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh-----hHH---HHHHcCCCCeEEEeCcC
Confidence 9999999999987655543 344444432 3789999999999865321 111 11111112678999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1315 171 GDGLHEGINELYQLILK 187 (202)
Q Consensus 171 ~~~v~~l~~~l~~~~~~ 187 (202)
|.|++++++++.+.+.+
T Consensus 149 g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TBTHHHHHHHHHHTGGG
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999987753
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=6.8e-24 Score=166.00 Aligned_cols=169 Identities=15% Similarity=0.046 Sum_probs=116.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccccee--------------eEe----ecccccccceEEEEEEcC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC--------------EKV----KGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~--------------~~~----~~~~~~~~~~~~~~~D~~ 76 (202)
..++.++|+++|++++|||||+++|.+............+. ... ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 45678999999999999999999999854322110000000 000 000001223789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch-hh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY-EL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-~~ 155 (202)
|++.+...+..++..+|++|+|+|+++..++.....++..+.... ..|+++|+||+|+.+..........+... ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998766777666665544331 35899999999998754332222211100 00
Q ss_pred cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
....+++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1124678999999999999999999988664
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=2.2e-24 Score=171.21 Aligned_cols=155 Identities=24% Similarity=0.289 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-Cch--------hhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-KLR--------PLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~ 88 (202)
..++|+++|.||+|||||+|+|.+..+....+..++|.+.....+ ..+...+.+|||||.. .+. .....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i-~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI-VIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEE-EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEE-ecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 348999999999999999999998865444444444443332222 3346789999999987 543 234567
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++|+|+|++++.++.... .+ ... .+.|+++|+||+|+.......++.... ..+.+++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~-------~~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKL-------GTDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHH-------TCSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHh-------cCCCcEEEEEC
Confidence 88999999999999887776532 22 222 278999999999997654444443322 12356899999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILK 187 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~ 187 (202)
++|.|+++++++|.+.+..
T Consensus 387 ktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GGTCCHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999997653
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=3.7e-25 Score=172.89 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=107.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh-------HHh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL-------WKS 87 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~ 87 (202)
.....++|+|+|+.|+|||||+++|++..+....+..+.+...............+.+|||||+..+... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3457899999999999999999999988775444444444333322221122348999999998765443 566
Q ss_pred hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEee
Q psy1315 88 YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATC 167 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (202)
++.++|++|+|+|+... .....|+..+... +.|+++|+||+|+.........+.. ....+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l------~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLY------ESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHS------SCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHH------HHHcCCCEEEEE
Confidence 88999999999999432 2234454444443 7899999999999876654333332 234567899999
Q ss_pred eecCCCHHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLILK 187 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~~ 187 (202)
|++|.|++++|++|.+.+.+
T Consensus 177 Aktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999998743
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=2.8e-24 Score=169.95 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhHHhhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLWKSYTR 90 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~ 90 (202)
.+|+++|.||||||||+|+|.+.+...+.+++|+|.+...... ......+.+|||||.+. +..++..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV-EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE-EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEE-EECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 4799999999999999999999876555566666655444333 33456799999999664 3456778899
Q ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH-HHHhCchhhcCcceE-EEEEeee
Q psy1315 91 CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI-EKLLGLYELNNMHLY-YIQATCA 168 (202)
Q Consensus 91 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa 168 (202)
++|++|+|+|+.++.+... .++...+.. .++|+++|+||+|+.... .... ..+. . .++ +++++||
T Consensus 81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~------~-lg~~~~~~iSA 147 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY------S-LGFGEPIPVSA 147 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG------G-GSSCSCEECBT
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH------h-cCCCCEEEEec
Confidence 9999999999986544432 222222222 168999999999975321 1111 1211 1 122 5789999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|++++++++.+.+.+.
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcccc
Confidence 99999999999999988643
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=3.2e-23 Score=158.67 Aligned_cols=125 Identities=24% Similarity=0.370 Sum_probs=99.5
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+||++|++.+...|..++++++++|+|||+++ .+++.....|+..+.......+.|+++|+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999998 57799999999988876445689999999999
Q ss_pred CCCC-----------------CcCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPN-----------------AIQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~-----------------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+.. .....+...++... .+. ...++++++|||+++.||+++|+++.+.+.+...
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 9842 12334444433210 010 1357899999999999999999999999876543
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=6.4e-23 Score=161.87 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=106.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeeccccc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGK 64 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 64 (202)
..+..++|+++|++++|||||+++|++..... .....|.+.......+ .
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~-~ 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF-E 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE-e
Confidence 35678999999999999999999996542110 0111344444433333 4
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchh---HH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVER---ME---EVKIELIKTIKNNDNFNVP-ILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 137 (202)
.....+.+|||||+++|...+..++..+|++|+|+|+++... |. .....+...... +.| +++|+||+|+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~----~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA----GVKHLIVLINKMDD 167 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc----CCCeEEEEeecCCC
Confidence 456789999999999999999999999999999999987532 11 222222222222 566 9999999999
Q ss_pred CCCcC----HH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 138 PNAIQ----IK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 138 ~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
..... .. ++..++....+.....++++++||++|.|++++.+
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 64321 11 12222221111111257899999999999999765
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=9.8e-24 Score=166.83 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=102.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh--------HHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--------WKSY 88 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~ 88 (202)
...++|+++|++|+|||||+|+|.+..+....+..+++.......+ ..+...+.+|||||...+... ...+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i-~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQL-VVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEE-EETTEEEEECC--------------------CC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEE-EECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3568999999999999999999998765433333343333322222 335578999999997554433 2335
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
++.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+....... .. ..+ ....+++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~--~~~--~~~~~~i~iSA 365 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SL--EYP--ENITQIVHTAA 365 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TC--CCC--TTCCCEEEEBT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HH--HHh--ccCCcEEEEEC
Confidence 788999999999998766554 2233332 2 36999999999997654322 11 111 13567999999
Q ss_pred ecCCCHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~ 188 (202)
++|.|+++++++|.+.+...
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999987543
No 139
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=6.2e-25 Score=175.76 Aligned_cols=162 Identities=20% Similarity=0.168 Sum_probs=112.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC-CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGI 95 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 95 (202)
++.++|+++|++++|||||+++|.+..+. ...++.........+.. .....+.+|||||++.|..++..+++.+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~--~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL--PSGEKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS--SCSSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe--CCCCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 45789999999999999999999876653 22222222222222211 2345789999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC---HHHHHHHhCchhhcCcceEEEEEeeeecCC
Q psy1315 96 IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ---IKQIEKLLGLYELNNMHLYYIQATCAITGD 172 (202)
Q Consensus 96 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (202)
|+|+|+++........ .+...... +.|+++|+||+|+.+... ...+... ....-.....++++++||++|.
T Consensus 80 ILVVDa~dg~~~qt~e-~l~~~~~~----~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE-SIQHAKDA----HVPIVLAINKCDKAEADPEKVKKELLAY-DVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp EEECBSSSCCCHHHHH-HHHHHHTT----TCCEEECCBSGGGTTTSCCSSSSHHHHT-TSCCCCSSSSEEECCCCSSSSC
T ss_pred EEEEECCCCccHHHHH-HHHHHHHc----CCcEEEEEecccccccchHHHHHHHHhh-hhhHHhcCCCceEEEEECCCCC
Confidence 9999999855444433 33333332 789999999999975321 1222221 1100011235799999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy1315 173 GLHEGINELYQLIL 186 (202)
Q Consensus 173 ~v~~l~~~l~~~~~ 186 (202)
|++++++++..++.
T Consensus 154 GI~eLle~I~~l~~ 167 (537)
T 3izy_P 154 NMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CchhHHHHHHHhhh
Confidence 99999999988764
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=4.5e-23 Score=155.38 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=106.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC-C--------chhhHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-K--------LRPLWKSY 88 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~--------~~~~~~~~ 88 (202)
+..+|+++|++|+|||||++++++..+....+..+.+........ ......+.+|||||.. . +......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~-~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH-TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE-EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE-EECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456899999999999999999999876544444444433222212 3456789999999987 2 22334556
Q ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceE-EEEEee
Q psy1315 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLY-YIQATC 167 (202)
Q Consensus 89 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~S 167 (202)
++.+|++++|+|+++ +.....++...... .+.|+++|+||+|+... .......+. .+....++ .++++|
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~--~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQ--FLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHH--HHHTTSCCSEEEECC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHH--HHHHhcCcCceEEEE
Confidence 788999999999976 33333344444332 27899999999999762 122222111 11122233 689999
Q ss_pred eecCCCHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLI 185 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~ 185 (202)
|+++.|++++++.+.+.+
T Consensus 156 A~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTTTHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998654
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=4.8e-23 Score=157.16 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCC----CCchhhHHhhh---
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ----EKLRPLWKSYT--- 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~--- 89 (202)
.+|+++|.+|||||||+++|.+.... .+ ..|...+...+.+ .....+.+||+||. ..+..+...++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~----~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET----DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC----SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe----CCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 46899999999999999999987532 11 1233333333333 22357999999994 33434444444
Q ss_pred cCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcceEEEE
Q psy1315 90 RCTDGIIFVIDSTD---VERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMHLYYIQ 164 (202)
Q Consensus 90 ~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (202)
+.+|++|+|+|+++ ++++.....|+..+..... ..++|+++|+||+|+..... ...+...+. ...+++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-------~~~~v~ 307 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-------DDYPVF 307 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-------SCCCBC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-------cCCCEE
Confidence 45999999999988 7888888877777765421 34899999999999975421 111222111 116789
Q ss_pred EeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 165 ATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 165 ~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++||++++|+++++++|.+.+.+.+
T Consensus 308 ~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 308 PISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred EEECCCCcCHHHHHHHHHHHHhhCc
Confidence 9999999999999999999886543
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=7.1e-23 Score=156.71 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=95.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
..+.+++|||+|++.+...|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999998 788999999999888775445689999999999
Q ss_pred CCCCCcC-----------------------HHHHHHHhCchhh------c-----CcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 136 DLPNAIQ-----------------------IKQIEKLLGLYEL------N-----NMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 136 Dl~~~~~-----------------------~~~~~~~~~~~~~------~-----~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
|+..+.. .++...++.. .+ . ....+.+++|||+++.||+++|+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~-~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK-KFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH-HHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHH-HHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9843210 1222222111 10 0 0235678999999999999999999
Q ss_pred HHHHHHHHh
Q psy1315 182 YQLILKKRK 190 (202)
Q Consensus 182 ~~~~~~~~~ 190 (202)
.+.+.+.+.
T Consensus 340 ~~~I~~~~l 348 (354)
T 2xtz_A 340 DETLRRRNL 348 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876654
No 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.8e-23 Score=144.34 Aligned_cols=129 Identities=28% Similarity=0.346 Sum_probs=94.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcC----
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRC---- 91 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~---- 91 (202)
..+.++|+++|++|||||||+++|.+..+.....+...+.. . ....+.+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---A---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---e---eecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 45789999999999999999999998876432111111110 1 1244578999999999888888887776
Q ss_pred CCEEEEEEeCC-CchhHHHHHHHHHHHHccC---CCCCCcEEEEeeCCCCCCCcCHHHHHHHh
Q psy1315 92 TDGIIFVIDST-DVERMEEVKIELIKTIKNN---DNFNVPILILANKQDLPNAIQIKQIEKLL 150 (202)
Q Consensus 92 ~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 150 (202)
+|++|+|||++ +.+++.....|+..+.... ...+.|+++|+||+|+.+......+...+
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 89999999999 8889998888887776532 23479999999999998876666555443
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=1.1e-22 Score=163.29 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=85.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCC------------------CCc---cccccceeeEeecccccccceEEEEEEc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQY------------------LNT---VPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
++..+|+++|++|+|||||+++|++... ... ....|.+........ ....+.+++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEEC
Confidence 4578999999999999999999962211 000 001122222222222 345788999999
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
||+.++...+..+++.+|++|+|+|+++........ .|..+... ++|+++|+||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~~----~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRLR----HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHTT----TCCEEEEEECTTSCCSC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHHc----CCCEEEEEeCCCCcccc
Confidence 999999999999999999999999999866665544 33333333 78999999999997643
No 145
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.89 E-value=2e-22 Score=154.82 Aligned_cols=125 Identities=25% Similarity=0.372 Sum_probs=92.4
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+||++|++.+...|..++++++++|+|||+++ .+++.....|+..+.......+.|+|+++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 46789999999999999999999999999999999998 78999999999988876445689999999999
Q ss_pred CCCCC------------------cCHHHHHHHh-----CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLL-----GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+..+ ....+...++ .+.......++++++|||+++.||+++|+++.+.+.+...
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 98521 2334444433 1111100346789999999999999999999999887654
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=1.9e-22 Score=152.37 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=99.4
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+++||++|+++++..|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5688999999999999999999999999999999654 678899888899988876556689999999999
Q ss_pred CCCCC------------------cCHHHHHHHhC-----chhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHHh
Q psy1315 136 DLPNA------------------IQIKQIEKLLG-----LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190 (202)
Q Consensus 136 Dl~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 190 (202)
|+... ...++...++. .. .+...++.+++|||+++.||+++|+.+.+.+.+.+.
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~-~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN-PDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-TTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-ccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 98542 23334433321 11 123467889999999999999999999999886653
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.6e-23 Score=166.38 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=103.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCC--------CCCchhhHHhhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG--------QEKLRPLWKSYT 89 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~ 89 (202)
...+|+++|.+|||||||+|+|.+..+....++.|++........ ......+.+||||| ++.+..+...++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC-TTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE-EECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 467999999999999999999999887766777788777666555 45567899999999 556777888899
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAI 169 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (202)
+.+|++|+|+|..+. +.....++...+.. .++|+++|+||+|+..... .. ...... ..+ ..+++||+
T Consensus 101 ~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~---~e~~~l--g~~-~~~~iSA~ 167 (456)
T 4dcu_A 101 DEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI---YDFYSL--GFG-EPYPISGT 167 (456)
T ss_dssp HHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--------------CCSGGG--SSS-SEEECCTT
T ss_pred hhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hH---HHHHHc--CCC-ceEEeecc
Confidence 999999999998753 33334455555543 3899999999999864311 11 111111 112 34699999
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy1315 170 TGDGLHEGINELYQLIL 186 (202)
Q Consensus 170 ~~~~v~~l~~~l~~~~~ 186 (202)
+|.|+.++++.+.+.+.
T Consensus 168 ~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TCTTHHHHHHHHHTTGG
T ss_pred cccchHHHHHHHHhhcc
Confidence 99999999999987664
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=1.3e-22 Score=161.77 Aligned_cols=165 Identities=19% Similarity=0.154 Sum_probs=107.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC----CC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ----YL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYT 89 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 89 (202)
..+.++|+++|++++|||||+++|.+.. .+ ......|.|.......+ ......+.+|||||++.+...+..++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-KLENYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-EETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEE-EECCEEEEEEECCChHHHHHHHHHHH
Confidence 3468999999999999999999999876 21 11111222222211111 22457899999999999999999999
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchh-hc-CcceEEEEEee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYE-LN-NMHLYYIQATC 167 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~S 167 (202)
..+|++|+|+|+++... .....++..+... +.|+++|+||+|+.+..........+.... .. ...+.+++++|
T Consensus 95 ~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~----~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPK-TQTGEHMLILDHF----NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp TSCCEEEEEEETTTCSC-HHHHHHHHHHHHT----TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred hhCCEEEEEEecCCCcc-HHHHHHHHHHHHc----CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 99999999999987321 1112222222222 688899999999986433222222211100 00 12367899999
Q ss_pred eecCCCHHHHHHHHHHHHH
Q psy1315 168 AITGDGLHEGINELYQLIL 186 (202)
Q Consensus 168 a~~~~~v~~l~~~l~~~~~ 186 (202)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998775
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=1.6e-22 Score=161.48 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC------------------------------CccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL------------------------------NTVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++.... ......|.+.......+ ..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~ 108 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF-ST 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE-EC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE-ec
Confidence 567899999999999999999999765211 01111244443333333 45
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHH-----HHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEE-----VKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+.+.+|||||++++...+..++..+|++|+|+|+++..++.. .......+... ....|+|||+||+|+.+.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccc
Confidence 66789999999999999999999999999999999998644322 12222222222 113579999999999763
Q ss_pred c--CHHHHHHHhCc--hhhc-CcceEEEEEeeeecCCCHHHH
Q psy1315 141 I--QIKQIEKLLGL--YELN-NMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 141 ~--~~~~~~~~~~~--~~~~-~~~~~~~~~~Sa~~~~~v~~l 177 (202)
. ...+....+.. ..+. ....++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2 12222222111 0110 123689999999999999863
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=5.5e-22 Score=160.70 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=109.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--CC---------C---ccccccceee----EeecccccccceEEEEEEcCCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--YL---------N---TVPTIGFNCE----KVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--~~---------~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
++..+|+++|+.++|||||+++|++.. .. + .....|.+.. ...+...++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997631 10 0 0111233322 2222111344588999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNM 158 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 158 (202)
.+|...+..+++.+|++|+|+|+++..+......|.... .. +.|+++|+||+|+............... + ..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~~----~ipiIvviNKiDl~~a~~~~v~~el~~~--l-g~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-EQ----DLVIIPVINKIDLPSADVDRVKKQIEEV--L-GL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-HT----TCEEEEEEECTTSTTCCHHHHHHHHHHT--S-CC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-HC----CCCEEEEEeccCccccCHHHHHHHHHHh--h-CC
Confidence 999999999999999999999999887777666555443 22 7899999999999875422212221110 1 11
Q ss_pred ceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 1124899999999999999999988764
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=1.4e-22 Score=148.80 Aligned_cols=172 Identities=11% Similarity=0.088 Sum_probs=101.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCC--------CCchhhH
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ--------EKLRPLW 85 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~ 85 (202)
.....++|+++|.+|+|||||+|++++...... .+..++|........ ......+.+|||||. +.+....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~-~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR-RWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE-EETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE-EECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 345789999999999999999999998876532 222233333322222 345678999999995 3333333
Q ss_pred Hhhh----cCCCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHH--hCchhhcCc
Q psy1315 86 KSYT----RCTDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKL--LGLYELNNM 158 (202)
Q Consensus 86 ~~~~----~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~--~~~~~~~~~ 158 (202)
..++ +.+|++|+|+|+++....+ ....++...... ...+.|+|+++||+|+.+......+... ..+..+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 3333 8999999999997532222 223344443322 1226899999999999764322212110 001111122
Q ss_pred ceEEEEEeeee-----cCCCHHHHHHHHHHHHHHH
Q psy1315 159 HLYYIQATCAI-----TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 159 ~~~~~~~~Sa~-----~~~~v~~l~~~l~~~~~~~ 188 (202)
++..++..++. .+.|+++|++.|.+.+.+.
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 33334444433 2689999999999888764
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.6e-22 Score=147.14 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc--cccccceeeEeecccccccceEEEEEEcCCCCCch----------
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR---------- 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------- 82 (202)
...+.++|+|+|++|||||||++++++...... .++ +++........ ......+.+|||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~-~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQG-SWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEE-EETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEE-EeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345689999999999999999999998774322 222 12222111111 2345689999999965432
Q ss_pred -hhHHhhhcCCCEEEEEEeCCCchhH-HHHHHHHHHHHccCCCCCCcEEEEee-CCCCCCCcCHHH---------HHHHh
Q psy1315 83 -PLWKSYTRCTDGIIFVIDSTDVERM-EEVKIELIKTIKNNDNFNVPILILAN-KQDLPNAIQIKQ---------IEKLL 150 (202)
Q Consensus 83 -~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~pvivv~n-K~Dl~~~~~~~~---------~~~~~ 150 (202)
.....+++.+|++|+|+|+++.... .....++...... ....|+++|+| |+|+.... ... ++..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 2233467889999999999863322 2233344443321 11346666666 99997542 222 11111
Q ss_pred CchhhcCcceEEE--EEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYI--QATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 151 ~~~~~~~~~~~~~--~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
. .+ .....++ +++||+++.|++++|++|.+.+...
T Consensus 173 ~--~~-~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 173 A--AC-GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp H--HT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H--Hh-CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1 11 1111112 7899999999999999999988764
No 153
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=7.5e-24 Score=168.25 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGII 96 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 96 (202)
.+.++|+++|++++|||||+++|.+..+... ...+.+.....+.+ ..+...+.+|||||++.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~-e~~GIT~~i~~~~v-~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASG-EAGGITQHIGAYHV-ETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBT-TBCCCCCCSSCCCC-CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccc-cCCCeeEeEEEEEE-EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987544311 11122221111111 223457899999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCc--ceEEEEEeeeecCCC
Q psy1315 97 FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNM--HLYYIQATCAITGDG 173 (202)
Q Consensus 97 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~Sa~~~~~ 173 (202)
+|+|+++....+ ....+...... +.|+++++||+|+.+.... .+...+.. ..+... ...+++++||++|.|
T Consensus 80 LVVda~~g~~~q-T~e~l~~~~~~----~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 80 LVVAADDGVMPQ-TIEAIQHAKAA----QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEETTTBSCTT-THHHHHHHHHT----TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEeecccCccHH-HHHHHHHHHhc----CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999998732211 11222222222 7899999999999753211 11111110 011111 247899999999999
Q ss_pred HHHHHHHHHH
Q psy1315 174 LHEGINELYQ 183 (202)
Q Consensus 174 v~~l~~~l~~ 183 (202)
++++++++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999875
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=3.2e-22 Score=162.30 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=106.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCC-----------C---ccccccceeeE----eecccccccceEEEEEEcCCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-----------N---TVPTIGFNCEK----VKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~-----------~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
+..+|+++|+.++|||||+++|++.... + .....|.+... ..+...++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4679999999999999999999863210 0 11123333332 2221113446899999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcc
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMH 159 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (202)
+|...+..+++.+|++|+|+|+++..+......|.... .. +.|+++|+||+|+.+............ .+ ...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~~----~ipiIvViNKiDl~~a~~~~v~~ei~~--~l-g~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-EM----DLEVVPVLNKIDLPAADPERVAEEIED--IV-GID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-HT----TCEEEEEEECTTSTTCCHHHHHHHHHH--HT-CCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC----CCCEEEeeeccCcccccHHHHHHHHHH--Hh-CCC
Confidence 99999999999999999999999877766666555443 22 789999999999987542221222111 01 111
Q ss_pred eEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 160 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+++++||++|.|++++++++.+.+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCC
Confidence 224799999999999999999988764
No 155
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1.5e-21 Score=152.93 Aligned_cols=165 Identities=20% Similarity=0.089 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCC---C-Cccc--cccceeeEeeccc-------------cc-c----cceEEE
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQY---L-NTVP--TIGFNCEKVKGQI-------------GK-C----KGINFL 71 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~~-~----~~~~~~ 71 (202)
.+..++|+++|+.++|||||+++|.+... . +..+ |....+....+.. .. + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 35689999999999999999999985432 1 1122 3333222221100 00 1 126899
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHH
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIE 147 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~ 147 (202)
+|||||++.+...+...+..+|++|+|+|+++..........+..+... ...|+++|+||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888899999999998643222222222222111 1358999999999976532 23344
Q ss_pred HHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..+... ...+.+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT---IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS---TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc---CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 443311 124678999999999999999999987654
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=7.9e-22 Score=160.10 Aligned_cols=162 Identities=22% Similarity=0.190 Sum_probs=110.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----cccccceeeEeecc------c-----ccccceEEEEEEcCCCCCc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIGFNCEKVKGQ------I-----GKCKGINFLIWDVGGQEKL 81 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~~~~~~~~~~------~-----~~~~~~~~~~~D~~G~~~~ 81 (202)
+.++|+++|++++|||||+++|++..+... .++.+.+....... . .+.....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 468999999999999999999987654322 23444333322110 0 0112236999999999999
Q ss_pred hhhHHhhhcCCCEEEEEEeCCC---chhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC--------------HH
Q psy1315 82 RPLWKSYTRCTDGIIFVIDSTD---VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ--------------IK 144 (202)
Q Consensus 82 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~ 144 (202)
...+..+++.+|++|+|+|+++ +.++..+. .+.. .+.|+++++||+|+..... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9999999999999999999998 44544433 2222 2789999999999964211 01
Q ss_pred H-----------HHHHhCchhh---------cCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 145 Q-----------IEKLLGLYEL---------NNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 145 ~-----------~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
. +...+....+ ......+++++||++|.|+++++++|...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 1111110000 01246799999999999999999999987753
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=2.5e-22 Score=149.59 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=92.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-------cccccceeeEeecccccccceEEEEEEcCCCC-------C
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NT-------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-------K 80 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-------~ 80 (202)
...++|+++|.+|+|||||+|+|++.... .+ .+|.+.+........ ++..+.+.+|||||.. .
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhh
Confidence 35799999999999999999998876543 22 455566666555543 4455799999999962 2
Q ss_pred chhhH-------HhhhcC-------------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 81 LRPLW-------KSYTRC-------------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 81 ~~~~~-------~~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+..+. ..++.. +|+++++++.... ++......+...+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 33333 344433 7899999977652 222222333333332 7899999999998765
Q ss_pred cCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
.........+. ......+++++++||.+++|+++++++|.+.+
T Consensus 160 ~e~~~~~~~i~--~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIM--KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH--HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH--HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 43333222221 11123567789999999999999999987643
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.1e-22 Score=156.76 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=101.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC---Cc----------cccc-------------------cceeeEeecccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL---NT----------VPTI-------------------GFNCEKVKGQIG 63 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~---~~----------~~~~-------------------~~~~~~~~~~~~ 63 (202)
.+..++|+++|++++|||||+++|++.... .. ..+. |.+.......+
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~- 99 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF- 99 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-
Confidence 456799999999999999999999865411 10 0111 12211111111
Q ss_pred cccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-
Q psy1315 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ- 142 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~- 142 (202)
......+.+|||||++.|...+..++..+|++|+|+|+++.... ....++...... ...|+++|+||+|+.+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence 33567899999999999999999999999999999999875432 233333333222 1246999999999976321
Q ss_pred -HH----HHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 143 -IK----QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 143 -~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
.. ++...+....+ .....+++++||++|.|++++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCcccccc
Confidence 11 12222111000 12358999999999999998543
No 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3.3e-21 Score=148.38 Aligned_cols=163 Identities=21% Similarity=0.225 Sum_probs=101.6
Q ss_pred ccE-EEEEcCCCCCHHHHHHHhhcCCCCC---ccccccceeeEeecccccccceEEEEEEcCCCCC---------chhhH
Q psy1315 19 SVH-IVMLGLDSAGKTTALYRLKFDQYLN---TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK---------LRPLW 85 (202)
Q Consensus 19 ~~~-i~v~G~~~~GKssL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~ 85 (202)
.++ |+++|.+|+|||||+|+|.+..... ...|...+...+.+ ....+.+|||+|... +...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-----~g~~v~l~DT~G~i~~lp~~lve~f~~tl 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-----NNRKIMLVDTVGFIRGIPPQIVDAFFVTL 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-----TTEEEEEEECCCBCSSCCGGGHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-----CCEEEEEEeCCCchhcCCHHHHHHHHHHH
Confidence 455 9999999999999999999876521 12232233333333 235789999999521 22222
Q ss_pred HhhhcCCCEEEEEEeCCCch--hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCc-hhhcCcceEE
Q psy1315 86 KSYTRCTDGIIFVIDSTDVE--RMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL-YELNNMHLYY 162 (202)
Q Consensus 86 ~~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (202)
..+..+|++++|+|++++. .......+. ..+......+.|+++|+||+|+.+............. ..+ ...+.+
T Consensus 253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~-~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~ 329 (364)
T 2qtf_A 253 -SEAKYSDALILVIDSTFSENLLIETLQSSF-EILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFD 329 (364)
T ss_dssp -HGGGGSSEEEEEEETTSCHHHHHHHHHHHH-HHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEE
T ss_pred -HHHHhCCEEEEEEECCCCcchHHHHHHHHH-HHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCc
Confidence 3468899999999998876 444433332 2222223347899999999999764311111110000 011 022457
Q ss_pred EEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 163 IQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 163 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++||+++.|++++++.|.+.+....
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 899999999999999999998776543
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=1e-21 Score=151.56 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEe
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVID 100 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d 100 (202)
+|+++|++++|||||+++|+ ....|....+... ......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~-----~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNN-----DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEE-----CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEE-----ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 2233444433333 2345679999999999999888888999999999999
Q ss_pred CCCchhHHHHHHHHHHHHccCCCCCCcE-EEEee-CCCCCCCcCHH----HHHHHhCchhhcCcceEEEEE--eeeec--
Q psy1315 101 STDVERMEEVKIELIKTIKNNDNFNVPI-LILAN-KQDLPNAIQIK----QIEKLLGLYELNNMHLYYIQA--TCAIT-- 170 (202)
Q Consensus 101 ~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~-- 170 (202)
++ ..+.....++...... +.|. ++++| |+|+ +..... ++...++.. ....+++++ +||++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---VLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---TTTTCEEEECCCCTTSSS
T ss_pred -CC-CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---CCCceEEEecccccccCc
Confidence 53 4455555555544333 5677 88899 9999 543222 233333211 113579999 99999
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q psy1315 171 -GDGLHEGINELYQLILKK 188 (202)
Q Consensus 171 -~~~v~~l~~~l~~~~~~~ 188 (202)
+.|++++++.|.+.+...
T Consensus 163 ~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 163 PFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 999999999999887654
No 161
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=1.3e-21 Score=151.45 Aligned_cols=125 Identities=23% Similarity=0.389 Sum_probs=98.0
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCC----------chhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+.+|||+|++.+...|..|+++++++|+|||+++ .++|.....|+..+.......+.|++||+||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 34789999999999999999999999999999999998 89999999999998876556689999999999
Q ss_pred CCCCCcC--------------------------------HHHHHHHhCc--hhh-----cCcceEEEEEeeeecCCCHHH
Q psy1315 136 DLPNAIQ--------------------------------IKQIEKLLGL--YEL-----NNMHLYYIQATCAITGDGLHE 176 (202)
Q Consensus 136 Dl~~~~~--------------------------------~~~~~~~~~~--~~~-----~~~~~~~~~~~Sa~~~~~v~~ 176 (202)
|+..... ......++.. ... .....+.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9843210 1122222110 000 012367889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1315 177 GINELYQLILKKRK 190 (202)
Q Consensus 177 l~~~l~~~~~~~~~ 190 (202)
+|+++.+.+.+.+.
T Consensus 375 vF~~v~~~I~~~~l 388 (402)
T 1azs_C 375 VFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876654
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=5.4e-22 Score=155.39 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcC--------CCCCc--------cccccceeeEeecccccccceEEEEEEcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFD--------QYLNT--------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..++|+++|++++|||||+++|.+. .+..+ ..+.|.+.......+ ......+.+|||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY-ETAKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE-ECSSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe-ccCCeEEEEEECCCh
Confidence 3457899999999999999999999873 22111 112344443333322 345678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-HH----HHHHHhCc
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-IK----QIEKLLGL 152 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~----~~~~~~~~ 152 (202)
++|...+..++..+|++|+|+|+++... .....++..+... +.| +++|+||+|+..... .. ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 3334455444332 678 889999999975221 11 22222211
Q ss_pred hhhcCcceEEEEEeeeecCCC
Q psy1315 153 YELNNMHLYYIQATCAITGDG 173 (202)
Q Consensus 153 ~~~~~~~~~~~~~~Sa~~~~~ 173 (202)
..+ .....+++++||++|.|
T Consensus 161 ~~~-~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEF-PGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTS-CTTTSCEEECCHHHHHH
T ss_pred hcc-cccCCCEEEccHHHhhh
Confidence 111 11247899999999987
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.4e-21 Score=147.26 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-----ccccc----------------------ceeeE-----------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----VPTIG----------------------FNCEK----------- 57 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-----~~~~~----------------------~~~~~----------- 57 (202)
....++|+|+|.+|||||||+++|++..+.+. .+.++ .+...
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999876421 11111 11110
Q ss_pred ------------eecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEE-EEEeCCCchhHHHHH
Q psy1315 58 ------------VKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGII-FVIDSTDVERMEEVK 111 (202)
Q Consensus 58 ------------~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~ 111 (202)
..+.........+.+|||||.. .+......+++.++.+| +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000113679999999953 34567778888888777 689998644333322
Q ss_pred HHHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcC-cceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 112 IELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNN-MHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 112 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.++..+. ..+.|+++|+||+|+.+... ... .+....... ....+++++||+++.|++++++++.+.
T Consensus 183 ~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVD----PQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHC----TTCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhC----CCCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 2333332 23789999999999976433 111 111111111 123579999999999999999998773
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.1e-21 Score=152.31 Aligned_cols=166 Identities=20% Similarity=0.110 Sum_probs=109.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC---C-Cccc--cccceeeEeeccc-------------cc-c----cceEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY---L-NTVP--TIGFNCEKVKGQI-------------GK-C----KGINF 70 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~~-~----~~~~~ 70 (202)
..+..++|+++|++++|||||+++|.+... . +..+ |....+....+.. .. + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346789999999999999999999985432 1 1122 3333322222100 00 1 12689
Q ss_pred EEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHH
Q psy1315 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQI 146 (202)
Q Consensus 71 ~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~ 146 (202)
.+|||||++.|...+...+..+|++|+|+|+++..........+..+... ...|+++|+||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999988888888888899999999998643122222222222111 13589999999999875321 223
Q ss_pred HHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 147 EKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
..++... ...+.+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGT---VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3333210 124678999999999999999999987654
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.8e-22 Score=164.76 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=104.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc------------------------------cccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP------------------------------TIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++........ ..|++.......+ ..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~-~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF-ST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE-EC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE-ec
Confidence 4678999999999999999999999764321110 1344444433333 44
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.+.+|||||++.+...+..+++.+|++|+|+|+++.. ++ .... ....+... ....|+|||+||+|+.+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~--lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASS--LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHT--TTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHH--cCCCeEEEEEecccccc
Confidence 5678999999999999999999999999999999998632 11 1112 22222222 11346999999999986
Q ss_pred CcC--HHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 140 AIQ--IKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 140 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
... ... +...+....+ ....++++++||++|.|+.++
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~-~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC-CGGGCEEEECCTTTCTTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHhhcc-cccCccEEeeecccCCCcccc
Confidence 321 112 2222111111 123578999999999999876
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=5.3e-22 Score=154.95 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=107.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC-------CCC--------ccccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ-------YLN--------TVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
+.++|+++|++++|||||+++|.+.. +.. .....|.|.......+ ......+.+|||||+++|.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY-STAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE-ECSSCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEe-ccCCeEEEEEECCChHHHH
Confidence 57899999999999999999998631 111 0112344443332222 3456789999999999998
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcC-H----HHHHHHhCchhhc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQ-I----KQIEKLLGLYELN 156 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~ 156 (202)
..+..++..+|++|+|+|+++....+. ..++..+... +.| +++|+||+|+.+... . .++...+....+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~----~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~- 154 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI----GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY- 154 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc----CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 888999999999999999987543332 3333333222 678 689999999975221 1 122222221111
Q ss_pred CcceEEEEEeeeecCCC----------HHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDG----------LHEGINELYQLIL 186 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~----------v~~l~~~l~~~~~ 186 (202)
....++++++||++|.| +.++++.|.+.+.
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 11246899999999764 8888888876553
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=2.5e-22 Score=158.54 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC--CCCCcc----------------------------ccccceeeEeeccccccc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD--QYLNTV----------------------------PTIGFNCEKVKGQIGKCK 66 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 66 (202)
++.++|+++|++++|||||+++|++. .+.... ...+.+.......+ ...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~-~~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-ETK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-ECS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE-ecC
Confidence 46799999999999999999999864 222100 01223333222222 345
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHH-------HHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK-------IELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-------~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.+|||||+++|...+..++..+|++|+|+|+++ .+|+... ..+...... .-.|+++|+||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 6789999999999999999999999999999999998 6666432 222222211 1246899999999976
Q ss_pred CcC--------HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHH
Q psy1315 140 AIQ--------IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179 (202)
Q Consensus 140 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (202)
... ..++...+....+ ....++++++||++|.|+.++++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCC-CcCCceEEEeecccCcccccccc
Confidence 311 1122222211111 11247899999999999986543
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=5.3e-22 Score=145.05 Aligned_cols=171 Identities=10% Similarity=0.093 Sum_probs=96.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCc-cccccceeeEeecccccccceEEEEEEcCCCC-----------Cch
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE-----------KLR 82 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~ 82 (202)
.....++|+++|++|+|||||++++++..+... .++.+.+........ ......+.+|||||.. .+.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS-SWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE-EETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE-EeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345789999999999999999999998877432 232233332222211 3345689999999943 344
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHh--CchhhcCcc
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL--GLYELNNMH 159 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~ 159 (202)
..+..+++.+|++|+|+|+++..... ....++...... ....|+++|+||+|+.......+..... .+..+...+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 45555667789999999987544321 112222222211 1146999999999987543322111000 011112233
Q ss_pred eEEEEEeeee-----cCCCHHHHHHHHHHHHHHH
Q psy1315 160 LYYIQATCAI-----TGDGLHEGINELYQLILKK 188 (202)
Q Consensus 160 ~~~~~~~Sa~-----~~~~v~~l~~~l~~~~~~~ 188 (202)
+..++.+++. ...++.++++.+.+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 4445555544 3468999999988877654
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=3.3e-21 Score=146.10 Aligned_cols=122 Identities=25% Similarity=0.276 Sum_probs=97.2
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCC----------CchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
+.+.+++||++|++.++..|..|+++++++|+|||++ +.+++.....|+..+.......+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4678999999999999999999999999999999998 778999999999998876556689999999999
Q ss_pred CCCCC-----------------cCHHHHHHHhCchh--------h--cCc-----------ceEEEEEeeeecCCCHHHH
Q psy1315 136 DLPNA-----------------IQIKQIEKLLGLYE--------L--NNM-----------HLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 136 Dl~~~-----------------~~~~~~~~~~~~~~--------~--~~~-----------~~~~~~~~Sa~~~~~v~~l 177 (202)
|+... ...++...++...- . +.. ..+.+++|||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 98531 12223322221100 0 111 4688999999999999999
Q ss_pred HHHHHHHHHH
Q psy1315 178 INELYQLILK 187 (202)
Q Consensus 178 ~~~l~~~~~~ 187 (202)
|+.+.+.+.+
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=154.36 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCC-C-c--------cccccceeeEeecccccccceEEEEEEcCCC-------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYL-N-T--------VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------- 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------- 78 (202)
....++|+++|++|+|||||+++|++.... . + .++.+.......+.. .+..+.+.+|||||.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-----------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccH
Confidence 345789999999999999999998765432 1 1 133333333333322 233568999999997
Q ss_pred CCchhhHH-------hhhcCCC-------------EEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWK-------SYTRCTD-------------GIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~-------~~~~~~d-------------~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+..++. .+++.++ +++++++.. ..++......+...+. .+.|+|+|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 55655655 5555433 444444431 3555555533333332 378999999999998
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
...........+ ..+....+++++++||+++.| ++.|.++.+.+.+.
T Consensus 188 ~~~ev~~~k~~i--~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 188 TLKERERLKKRI--LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp CHHHHHHHHHHH--HHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CHHHHHHHHHHH--HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 654333221111 122345678999999999999 88888888877643
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=3e-22 Score=158.81 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=101.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCCc----------------------------cccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNT----------------------------VPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++. .+... ....|.+.......+ ..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~-~~ 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF-ET 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE-EC
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE-ec
Confidence 456899999999999999999999864 11110 001233332222222 34
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RME---EVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.+|||||++.|...+..++..+|++|+|+|+++.. +|+ ....++...... +.| +++|+||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~----~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL----GVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT----TCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc----CCCeEEEEEEccccc
Confidence 5678999999999999999999999999999999998642 221 223333322222 555 99999999997
Q ss_pred CC--cCHHH----HHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 139 NA--IQIKQ----IEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 139 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
+. ..... +...+....+ ....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC-CccCceEEEeecccCcCcccc
Confidence 42 11111 2222211111 112478999999999999754
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=8.3e-21 Score=140.51 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhhHH
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWK 86 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 86 (202)
++.+++.....+.++|+++|++|+|||||+++|++..+....+..+.+........ ......+.+|||||+.++.....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~l~liDTpG~~~~~~~~~ 102 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR-TMGGFTINIIDTPGLVEAGYVNH 102 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE-EETTEEEEEEECCCSEETTEECH
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE-EECCeeEEEEECCCCCCcccchH
Confidence 44556666667899999999999999999999999876444443333333333222 34566899999999876654443
Q ss_pred hhhc---------CCCEEEEEEeCCCchhHHHH-HHHHHHHHccCC-CCCCcEEEEeeCCCCCC
Q psy1315 87 SYTR---------CTDGIIFVIDSTDVERMEEV-KIELIKTIKNND-NFNVPILILANKQDLPN 139 (202)
Q Consensus 87 ~~~~---------~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~ 139 (202)
.+++ .+|++++|++++... +... ..++..+..... ....|+++|+||+|+..
T Consensus 103 ~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 103 QALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 3332 689999999997644 3332 233333333211 11349999999999953
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1.1e-21 Score=155.87 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=88.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC--CCC----------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ--YLN----------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~~----------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++.. +.. .....|.|.......+ ..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~-~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-ET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE-EC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE-ec
Confidence 3678999999999999999999997521 110 0001122222211111 23
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hHH---HHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RME---EVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.+|||||++.|...+..++..+|++|+|+|+++.. +|+ .....+..... .+.| +|||+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 4578999999999999999999999999999999998752 222 12222222222 2677 99999999996
Q ss_pred CCcC-H---H----HHHHHhCch-hhcCcceEEEEEeeeecCCCHHHHH
Q psy1315 139 NAIQ-I---K----QIEKLLGLY-ELNNMHLYYIQATCAITGDGLHEGI 178 (202)
Q Consensus 139 ~~~~-~---~----~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (202)
.... . . ++...+... .+....+++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 5221 1 1 222222111 1100126889999999999998866
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=6.5e-21 Score=161.87 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=107.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC-------CC--------CccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ-------YL--------NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
..+..++|+++|++++|||||+++|.+.. +. ....+.|.|.......+ ......+.+|||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f-~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE-ECSSCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE-cCCCEEEEEEECCChH
Confidence 34578999999999999999999998631 10 11234455544433323 3456789999999999
Q ss_pred CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCCCCCCcCH-----HHHHHHhCch
Q psy1315 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQDLPNAIQI-----KQIEKLLGLY 153 (202)
Q Consensus 80 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-----~~~~~~~~~~ 153 (202)
+|...+..++..+|++|+|+|+++.... ....++..+... ++| +|||+||+|+.+.... .++...+...
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999875332 233344333332 678 7899999999863211 1222222211
Q ss_pred hhcCcceEEEEEeeeecC--------CCHHHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITG--------DGLHEGINELYQLI 185 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~--------~~v~~l~~~l~~~~ 185 (202)
.+ ....++++++||++| .|+.++++.|.+.+
T Consensus 446 G~-~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 446 DF-PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TS-CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cc-cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 11 112478999999999 46888888877644
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.84 E-value=1e-20 Score=152.02 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=81.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC---------------------CccccccceeeEeecccccccceEEEEEEc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL---------------------NTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (202)
.+..+|+++|++|+|||||+++|++.... +..++.|.+.......+ ....+.+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-PYHDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-EETTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-EECCeEEEEEEC
Confidence 46799999999999999999999863210 00112233322222222 446788999999
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
||+..+...+..+++.+|++|+|+|+++.... .....+.... ..+.|+++|+||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~----~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR----LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT----TTTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH----HcCCCEEEEEcCcCCcccc
Confidence 99999998889999999999999999875322 2222222222 2378999999999997653
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=1.4e-20 Score=155.75 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccc--------------eeeEeec---------------ccccc-
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGF--------------NCEKVKG---------------QIGKC- 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~--------------~~~~~~~---------------~~~~~- 65 (202)
....++|+|+|.+|+|||||+|+|++....+..+.+++ +...... .. ..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i-~~~ 144 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTI-DPA 144 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCC-CHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcC-CHH
Confidence 45689999999999999999999998876543322222 1110000 00 00
Q ss_pred -------------------------c--ceEEEEEEcCCCCC---chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHH
Q psy1315 66 -------------------------K--GINFLIWDVGGQEK---LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELI 115 (202)
Q Consensus 66 -------------------------~--~~~~~~~D~~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~ 115 (202)
. ...+.+|||||... .......+++.+|++|+|+|++++.+......|..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 0 03589999999433 45667788999999999999988777666543332
Q ss_pred HHHccCCCCCCcEEEEeeCCCCCCCc-----CHHH-------HHHHhC--chhhcC-----cceEEEEEeeee-------
Q psy1315 116 KTIKNNDNFNVPILILANKQDLPNAI-----QIKQ-------IEKLLG--LYELNN-----MHLYYIQATCAI------- 169 (202)
Q Consensus 116 ~~~~~~~~~~~pvivv~nK~Dl~~~~-----~~~~-------~~~~~~--~~~~~~-----~~~~~~~~~Sa~------- 169 (202)
.+ .. .+.|+++|+||+|+.... .... +...+. +..... ....+++++||+
T Consensus 225 ~l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 225 YI-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HT-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HH-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 32 22 267899999999986432 1111 111110 011111 123468999999
Q ss_pred -------cCCCHHHHHHHHHHHHHHHHhhh
Q psy1315 170 -------TGDGLHEGINELYQLILKKRKLQ 192 (202)
Q Consensus 170 -------~~~~v~~l~~~l~~~~~~~~~~~ 192 (202)
++.|++++++.+.+.+...+...
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~~~~~~~ 330 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLTRERAIA 330 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHHHTHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999886554433
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.5e-22 Score=164.63 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC------------------------------ccccccceeeEeecccccc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN------------------------------TVPTIGFNCEKVKGQIGKC 65 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 65 (202)
.+..++|+++|++++|||||+++|++..... .....|+|.......+ ..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~-~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF-ES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE-Ee
Confidence 5578899999999999999999996431100 0012234444433333 34
Q ss_pred cceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch---hH---HHHHHHHHHHHccCCCCCCc-EEEEeeCCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE---RM---EEVKIELIKTIKNNDNFNVP-ILILANKQDLP 138 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 138 (202)
....+.||||||++.|...+..++..+|++|+|+|+++.. ++ ......+...... +.| +|||+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----gip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----GISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----SCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCeEEEEEeccccc
Confidence 4578999999999999988888999999999999998532 11 1112222222222 455 99999999997
Q ss_pred CCc--CHH----HHHHHh-CchhhcCcceEEEEEeeeecCCCHH
Q psy1315 139 NAI--QIK----QIEKLL-GLYELNNMHLYYIQATCAITGDGLH 175 (202)
Q Consensus 139 ~~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (202)
+.. ... ++...+ ....+ ...+++++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCC-CccceEEEEEecccCcccc
Confidence 621 111 222222 11111 2246789999999999998
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=3.8e-20 Score=132.48 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=98.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC-CCccccccceeeEeecccccccceEEEEEEcCCCCC----------chh
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK----------LRP 83 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~ 83 (202)
...+..+|+++|++|||||||++++.+..+ ..+.++.|.+.....+.. .. .+.+||+||... +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 345678999999999999999999998774 345667776654333322 11 578999999742 223
Q ss_pred hHHhhh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCH----HHHHHHhCchhhc
Q psy1315 84 LWKSYT---RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQI----KQIEKLLGLYELN 156 (202)
Q Consensus 84 ~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~----~~~~~~~~~~~~~ 156 (202)
....++ ..++++++++|++++.+.... .+...... .+.|+++|+||+|+.+.... ..+...+. .
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~--~-- 168 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL--A-- 168 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--G--
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH--h--
Confidence 333444 468999999999876554321 11111111 26899999999998764221 12222221 0
Q ss_pred CcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 157 NMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 157 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
....+.++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 1125788999999999999999999887654
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.82 E-value=6.4e-20 Score=139.17 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=100.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----cccc---ceee-------------------------------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----PTIG---FNCE------------------------------- 56 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----~~~~---~~~~------------------------------- 56 (202)
....++|+|+|.+|+|||||+|+|++..+.+.. ..++ .+..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 346789999999999999999999998762211 1110 0000
Q ss_pred -------------------EeecccccccceEEEEEEcCCCCC-------------chhhHHhhhcCCCEEEEEEeCCCc
Q psy1315 57 -------------------KVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYTRCTDGIIFVIDSTDV 104 (202)
Q Consensus 57 -------------------~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~ 104 (202)
...+.+.......+.+|||||... +......+++.+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000000012335799999999653 456677889999999999997432
Q ss_pred hhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhc-CcceEEEEEeeeec---CCCHHHHHHH
Q psy1315 105 ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELN-NMHLYYIQATCAIT---GDGLHEGINE 180 (202)
Q Consensus 105 ~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~---~~~v~~l~~~ 180 (202)
.........+..... ..+.|+++|+||+|+...... ....+...... .....+++.+|+.+ +.|+.++++.
T Consensus 181 ~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211111111222222 237899999999999765331 11112111110 12234566667777 8999999999
Q ss_pred HHHHHHH
Q psy1315 181 LYQLILK 187 (202)
Q Consensus 181 l~~~~~~ 187 (202)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8887754
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.82 E-value=3.6e-20 Score=137.68 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=87.7
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCCchhh---
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPL--- 84 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--- 84 (202)
+..++.......++|+++|.+|+|||||+|+|++..+....++.+.+........ ......+.+|||||..++...
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~l~iiDTpG~~~~~~~~~~ 106 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYINDM 106 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECHH
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE-eeCCeEEEEEECCCCCCCccchHH
Confidence 4455555666789999999999999999999998877555555555544443333 456778999999997654322
Q ss_pred ----HHhh--hcCCCEEEEEEeCCCchhHHHH-HHHHHHHHccCC-CCCCcEEEEeeCCCCCCC
Q psy1315 85 ----WKSY--TRCTDGIIFVIDSTDVERMEEV-KIELIKTIKNND-NFNVPILILANKQDLPNA 140 (202)
Q Consensus 85 ----~~~~--~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~ 140 (202)
+..+ .+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus 107 ~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 107 ALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 1122 2469999999998753 34332 234444333211 112699999999999654
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=2.9e-19 Score=147.88 Aligned_cols=122 Identities=22% Similarity=0.137 Sum_probs=85.2
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCC--CC------------Cc---cccccceeeEeecccccccceEEEEEEcC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQ--YL------------NT---VPTIGFNCEKVKGQIGKCKGINFLIWDVG 76 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 76 (202)
...++..+|+++|++|+|||||+++|+... +. +. ....+.+........ ....+.+++||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECc
Confidence 345678999999999999999999998421 10 00 001122221111111 3346789999999
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
|+..+...+..+++.+|++|+|+|+++..+......|. ..... +.|+++|+||+|+....
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----TCCEEEEEECTTSTTCC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----CCCEEEEEECCCcccCC
Confidence 99999999999999999999999999877766654433 33333 78999999999997643
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.6e-18 Score=142.98 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCC-c-------------cc---cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLN-T-------------VP---TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
..+..+|+++|+.|+|||||+++|.+..... . .+ ..+.++....... ....+.+++|||||+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCc
Confidence 4567899999999999999999998433210 0 00 1122222222222 345788999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+...+..+++.+|++++|+|+++...... ..++...... +.|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc----cCCEEEEecCCchh
Confidence 9999999999999999999999876543332 3344444433 78999999999987
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=5.8e-18 Score=140.34 Aligned_cols=121 Identities=19% Similarity=0.099 Sum_probs=84.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCC--CC------------Ccc---ccccceee----Eeeccc--ccccceEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQ--YL------------NTV---PTIGFNCE----KVKGQI--GKCKGINFL 71 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~--~~------------~~~---~~~~~~~~----~~~~~~--~~~~~~~~~ 71 (202)
..++..+|+++|+.|+|||||+++|+... +. +.. ...+.+.. ...+.. .+...+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34678899999999999999999997531 11 000 01222222 222210 022348899
Q ss_pred EEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 72 ~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
+|||||+.+|...+..+++.+|++|+|+|+++........ .|...... +.|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~~----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANKY----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHHc----CCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999998765444433 33333332 7899999999998754
No 184
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.79 E-value=2.9e-19 Score=137.52 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=95.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-----cccc----------------------ceee-------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTV-----PTIG----------------------FNCE------------- 56 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-----~~~~----------------------~~~~------------- 56 (202)
...++|+|+|.+|||||||+++|++..+.+.. +.++ .+..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999998764211 1111 0000
Q ss_pred ----------EeecccccccceEEEEEEcCCCC-------------CchhhHHhhhcCCCEEEE-EEeCCCchhHHHHHH
Q psy1315 57 ----------KVKGQIGKCKGINFLIWDVGGQE-------------KLRPLWKSYTRCTDGIIF-VIDSTDVERMEEVKI 112 (202)
Q Consensus 57 ----------~~~~~~~~~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~~ 112 (202)
.....+.......+.+|||||.. .+..+...|+..++.+|+ |.+.+..-.-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00000001124679999999942 244567778877665555 455543211111111
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCCcC-HHHHHHHhCchhhcCcc-eEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQ-IKQIEKLLGLYELNNMH-LYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
++..+ ...+.|+++|+||+|+.+... .... +....+.... ..+++++||+++.|++++++.+.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHH---HhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222 234789999999999975432 1111 1111111112 357899999999999999998876
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=3.9e-19 Score=137.22 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=97.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc---------------------------------------------
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG--------------------------------------------- 52 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~--------------------------------------------- 52 (202)
....|+|+|++|||||||+++|.+..+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 55699999999999999999999987632211100
Q ss_pred --------ceeeEeecccccccceEEEEEEcCCCCCc-------------hhhHHhhhcCCCEEEEEEeCCCchhHHHHH
Q psy1315 53 --------FNCEKVKGQIGKCKGINFLIWDVGGQEKL-------------RPLWKSYTRCTDGIIFVIDSTDVERMEEVK 111 (202)
Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 111 (202)
+....+...+.......+.+|||||...+ ......|++++|++|+|+|..+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 00000011111122446899999997665 66788899999999999987643332211
Q ss_pred HHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHH
Q psy1315 112 IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181 (202)
Q Consensus 112 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (202)
+ ..+.......+.|+++|+||+|+....... ...+. ......+.+++++|+.++.++++.+..+
T Consensus 192 -~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~--~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 -A-IKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILE--GRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHT--TSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred -H-HHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHc--CccccccCCeEEEEECChHHhccCCCHH
Confidence 1 122222233478999999999997543211 11111 1123455778999999888777665443
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=3.5e-18 Score=141.52 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC--CCCC---------ccc------cccceeeEeecccccccceEEEEEEcCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD--QYLN---------TVP------TIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~--~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 78 (202)
.++..+|+++|++|+|||||+++|++. .+.. ... ..+.+........ ....+.+++|||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA-AWEGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEE-EETTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEE-EECCeeEEEEECcCC
Confidence 456789999999999999999999842 2110 000 1122222211111 334678999999999
Q ss_pred CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 79 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
..+...+..+++.+|++|+|+|+++..+......| ..+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----CCCEEEEEECCCcccc
Confidence 99999999999999999999999987666654433 334333 7899999999999764
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1.1e-19 Score=136.88 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC-CCCCcc---------ccccceeeEeecccccccceEEEEEEcCCC-------
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD-QYLNTV---------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQ------- 78 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------- 78 (202)
..-.++|+++|++|+|||||++++.+. .++... ++.+.....+.... .+....+++||++|.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC---------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-CCcccCcchhhhhhhhhhcCcH
Confidence 445789999999999999999998875 333221 22222111222211 234578999999997
Q ss_pred CCchhhHH-------hhhcC-------------CCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 79 EKLRPLWK-------SYTRC-------------TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 79 ~~~~~~~~-------~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+.+..... .+++. +++++++.+.+. .+++.....+..... ...|+++|+||.|+.
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 168 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCC
Confidence 55554443 44333 234555555432 234333322222221 267999999999997
Q ss_pred CCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
............ ..+....+++++++||+++ |++++|+++.+.+.+
T Consensus 169 ~~~e~~~~~~~~--~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 169 TLKERERLKKRI--LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp CHHHHHHHHHHH--HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CHHHHHHHHHHH--HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 643322111111 1122334678999999999 999999999988754
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=3e-18 Score=133.65 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeecccccccceEEEEEEcCCCCCc-------hhhHHhhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL-------RPLWKSYT 89 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~ 89 (202)
-.|+++|++|||||||++++.+.... .+ ..|...+...+.. .....+.+||+||.... .......+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~----~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV----SEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC----SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe----cCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 46899999999999999999887431 11 1111222222222 12357899999996421 11222345
Q ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCC-CCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeee
Q psy1315 90 RCTDGIIFVIDSTDVERMEEVKIELIKTIKNND-NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168 (202)
Q Consensus 90 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (202)
+.++.+++++|++ ...+..+..+..++..... ....|.++|+||+|+........+...+ ...+.+++.+||
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l------~~~g~~vi~iSA 306 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL------AREGLAVLPVSA 306 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH------HTTTSCEEECCT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH------HhcCCeEEEEEC
Confidence 6799999999997 5566666655555443210 1257999999999987652222222221 123467899999
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q psy1315 169 ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 169 ~~~~~v~~l~~~l~~~~~~~~ 189 (202)
++++|+++++++|.+.+.+.+
T Consensus 307 ~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHTSC
T ss_pred CCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=2.4e-19 Score=139.46 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-----cccccceeeEeecc---------------cccccceEEEEEEcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-----VPTIGFNCEKVKGQ---------------IGKCKGINFLIWDVGG 77 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~G 77 (202)
++|+++|.||||||||+|+|++.... .+ .++.+........+ ......+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987631 11 12222211110000 0011246799999999
Q ss_pred CCC----chhhHH---hhhcCCCEEEEEEeCCCc
Q psy1315 78 QEK----LRPLWK---SYTRCTDGIIFVIDSTDV 104 (202)
Q Consensus 78 ~~~----~~~~~~---~~~~~~d~~ilv~d~~~~ 104 (202)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 643 222222 457889999999999874
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=1.3e-18 Score=134.03 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=101.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC-----Ccccccc----------------ceeeEeec
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL-----NTVPTIG----------------FNCEKVKG 60 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~-----~~~~~~~----------------~~~~~~~~ 60 (202)
++..+.+...+...|+++|.+|+|||||+++|... +.. ...+..+ ........
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPS 147 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECC
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEEC
Confidence 44555555677889999999999999999998532 100 0000000 00000000
Q ss_pred cc-----------------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC
Q psy1315 61 QI-----------------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123 (202)
Q Consensus 61 ~~-----------------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (202)
.. .....+.+.+|||||... .....+..+|++|+|+|....+.+..+. . ..
T Consensus 148 ~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~ 215 (355)
T 3p32_A 148 PTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GV 215 (355)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TS
T ss_pred CCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hH
Confidence 00 022457899999999533 2334458899999999987544332211 1 11
Q ss_pred CCCcEEEEeeCCCCCCCcCHHHHHHHhCch--hhc---CcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 124 FNVPILILANKQDLPNAIQIKQIEKLLGLY--ELN---NMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 124 ~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
...|+++|+||+|+............+... .+. ..++.+++++||++|.|+++++++|.+.+..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 246999999999986543222221111100 010 1235689999999999999999999988754
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.72 E-value=2.3e-17 Score=133.34 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=82.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCC--Cccccccceee-Eeeccc-------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCE-KVKGQI------------------------------- 62 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~-~~~~~~------------------------------- 62 (202)
...++|+|+|.+|+|||||+|+|++..+. ...+...++.. .+....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 46789999999999999999999998763 22222111111 000000
Q ss_pred ------ccccceEEEEEEcCCCCC-----------chhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCC
Q psy1315 63 ------GKCKGINFLIWDVGGQEK-----------LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125 (202)
Q Consensus 63 ------~~~~~~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 125 (202)
...-...+.+|||||... +......++..+|++|+|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000003589999999654 456677788999999999999875444555555544432 26
Q ss_pred CcEEEEeeCCCCCCCcCHHH
Q psy1315 126 VPILILANKQDLPNAIQIKQ 145 (202)
Q Consensus 126 ~pvivv~nK~Dl~~~~~~~~ 145 (202)
.|+++|+||+|+........
T Consensus 219 ~pvilVlNK~Dl~~~~el~~ 238 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMR 238 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHH
Confidence 89999999999986544333
No 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=2.9e-18 Score=129.17 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=100.7
Q ss_pred HHHHHhhcCCCC--CccccccceeeEeecccccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCch-hHHHH
Q psy1315 34 TALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEV 110 (202)
Q Consensus 34 sL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~ 110 (202)
+|+.++..+.|. .+.||+|..+. .... .+. .+.+||+ ++++..+++.+++++|++|+|||++++. ++..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~---~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPD---ETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECC---CSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEc---CCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 577788877775 46788885443 3331 222 7899999 8999999999999999999999999987 68888
Q ss_pred HHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 111 KIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 111 ~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..|+..+... +.|+++|+||+|+.+.....+....... + ... +++++|||++|.|++++|+.+..
T Consensus 105 ~~~l~~~~~~----~~piilv~NK~DL~~~~~v~~~~~~~~~--~-~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEKN----ELETVMVINKMDLYDEDDLRKVRELEEI--Y-SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHT----TCEEEEEECCGGGCCHHHHHHHHHHHHH--H-TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHC----CCCEEEEEeHHHcCCchhHHHHHHHHHH--H-hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 8787765442 7999999999999765332223333221 1 111 68999999999999999987653
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=131.07 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=75.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCc---------cccccceeeEeecccc-cccceEEEEEEcCCCCCch----
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---------VPTIGFNCEKVKGQIG-KCKGINFLIWDVGGQEKLR---- 82 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~---- 82 (202)
.-.++|+++|++|+|||||++.|++..++.. .++.+. ..+.+... .+....+++||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~--~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV--EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEE--EEEECC------CEEEEEEECC----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceee--eeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3467899999999999999999998765311 112111 12222111 2234578999999965431
Q ss_pred ---hh------------------HHhhhcCCCEEEEEEeCCCc-hhHHHHH-HHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 83 ---PL------------------WKSYTRCTDGIIFVIDSTDV-ERMEEVK-IELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 83 ---~~------------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
.+ ...++.++++.+++|..... .++.... .++..+ . .+.|+|+|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 11 11223445544444444322 3444443 344433 2 2789999999999976
Q ss_pred CcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
..........+. ......+++++++|++++.++.++|..+.+.
T Consensus 182 ~~ev~~~k~~i~--~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 182 PEECQQFKKQIM--KEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHH--HHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHH--HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 533332222221 1123356789999999999999988877654
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=1e-16 Score=129.44 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=83.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCC------------------C---CccccccceeeEeecccccccceEEEEE
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQY------------------L---NTVPTIGFNCEKVKGQIGKCKGINFLIW 73 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (202)
..++.-+|+|+|+.++|||||..+|+.... . +.....|.+.......+ ..+.+.++++
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlI 105 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLL 105 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEE
Confidence 344677999999999999999999963211 0 11111122222222222 4577899999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+.+|.......++-+|++|+|+|+...-.-... ..|...... ++|.++++||+|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT----TCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh----CCceEEEEecccchhc
Confidence 9999999999999999999999999999864333333 344444444 8999999999998764
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=7.2e-17 Score=136.17 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC------------CCCc-------cccccceeeEeeccc-----
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ------------YLNT-------VPTIGFNCEKVKGQI----- 62 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~------------~~~~-------~~~~~~~~~~~~~~~----- 62 (202)
+.++.+.....+..+|+++|++++|||||+++|++.. +.+. ..|+........+..
T Consensus 7 ~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 7 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp HHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 3344444455678899999999999999999998641 1100 112222222222210
Q ss_pred ------ccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 63 ------GKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 63 ------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
.++..+.+++|||||+.+|...+..+++.+|++|+|+|+.+..++.....|. ..... +.|+++|+||+|
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~----~~p~ilviNK~D 161 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALGE----RIKPVVVINKVD 161 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHHT----TCEEEEEEECHH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc----CCCeEEEEECCC
Confidence 1234788999999999999999999999999999999999887777655443 33332 789999999999
Q ss_pred CC
Q psy1315 137 LP 138 (202)
Q Consensus 137 l~ 138 (202)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=125.09 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=89.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC------CC--Ccccc-----------------------------c------cc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ------YL--NTVPT-----------------------------I------GF 53 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~------~~--~~~~~-----------------------------~------~~ 53 (202)
.....|+++|.||||||||+|++.+.. .. ...|+ . |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999998521 00 00000 0 00
Q ss_pred eeeEeecc-cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEe
Q psy1315 54 NCEKVKGQ-IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA 132 (202)
Q Consensus 54 ~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~ 132 (202)
+....... .-....+.+.++||+|.... .......+|.+++|+|++++.....+.. .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 00000000 00124567899999995321 2345678999999999976433221111 11 146889999
Q ss_pred eCCCCCCCcC----HHHHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 133 NKQDLPNAIQ----IKQIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 133 nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
||+|+.+... ...+...+.... ....+..+++++||+++.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999864321 111222221100 00112457899999999999999999988764
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.67 E-value=2.8e-16 Score=120.29 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=95.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC------CCC-----Ccccc-----cc-------------ceeeEee
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD------QYL-----NTVPT-----IG-------------FNCEKVK 59 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~------~~~-----~~~~~-----~~-------------~~~~~~~ 59 (202)
+..+.....+...|+++|.+|+|||||++.+.+. +.. ...+. .+ .......
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~ 125 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVP 125 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEEC
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCc
Confidence 3444555677889999999999999999999632 110 00000 00 0000000
Q ss_pred --------------cc-cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCC
Q psy1315 60 --------------GQ-IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF 124 (202)
Q Consensus 60 --------------~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~ 124 (202)
.. ......+.+.++||||...... .....+|++++|+|++....+..+.. .. .
T Consensus 126 ~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~ 193 (341)
T 2p67_A 126 SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------M 193 (341)
T ss_dssp C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------H
T ss_pred cccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------h
Confidence 00 0012356899999999654333 34688999999999975432211110 00 1
Q ss_pred CCcEEEEeeCCCCCCCcCHH----HHHHHhCchh-hcCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 125 NVPILILANKQDLPNAIQIK----QIEKLLGLYE-LNNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 125 ~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
+.|.++|+||+|+....... .+...+.... ....+..+++++||++|.|++++++.|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46889999999987642222 1222111000 00112457899999999999999999988765
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.7e-15 Score=115.79 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC-Cc--cccccceeeEeecccc------------cccceEEEEEEcCCCCCch--
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NT--VPTIGFNCEKVKGQIG------------KCKGINFLIWDVGGQEKLR-- 82 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~-~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G~~~~~-- 82 (202)
++|+++|.||||||||+|++.+..+. .. ..|...+...+.++-. ......+++||+||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632 11 1233333323332100 0012579999999987643
Q ss_pred -----hhHHhhhcCCCEEEEEEeCCC
Q psy1315 83 -----PLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 83 -----~~~~~~~~~~d~~ilv~d~~~ 103 (202)
.....+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 234456899999999999975
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=5.7e-17 Score=116.82 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=93.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCCCC-----ccccc------------cceeeEeeccc-c------------cccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLN-----TVPTI------------GFNCEKVKGQI-G------------KCKG 67 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~~~-----~~~~~------------~~~~~~~~~~~-~------------~~~~ 67 (202)
+..+|+++|.+|||||||+++|.+..... ..... +.+........ . ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 56799999999999999999998642110 00000 11111111100 0 1234
Q ss_pred eEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cCHHH
Q psy1315 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQIKQ 145 (202)
Q Consensus 68 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~ 145 (202)
..+.+|||+|+..... .+....+.+++|+|+.+..... ..+ ... . +.|+++|+||+|+.+. .....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~~~-~~~--~----~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--EKH-PEI--F----RVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--HHC-HHH--H----HTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--hhh-hhh--h----hcCCEEEEecccCCcchhhHHHH
Confidence 6789999999521111 1113578999999987643211 111 111 1 5789999999998643 23444
Q ss_pred HHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHHH
Q psy1315 146 IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 189 (202)
....+.. . ....+++++||++|.|+++++++|.+.+....
T Consensus 177 ~~~~~~~--~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 177 MKADAKL--I--NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHH--H--CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHH--h--CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 4443321 1 23468999999999999999999998875543
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=2.9e-16 Score=129.80 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=98.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCcccccc--------------------------------------------
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIG-------------------------------------------- 52 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~-------------------------------------------- 52 (202)
-..++|+|+|.+++|||||+|+|++..+.+......
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 467899999999999999999999987632211100
Q ss_pred ------ceeeEeecccccccceEEEEEEcCCCCC-------------chhhHHhhh-cCCCEEEEEEeCCCchhHHHHHH
Q psy1315 53 ------FNCEKVKGQIGKCKGINFLIWDVGGQEK-------------LRPLWKSYT-RCTDGIIFVIDSTDVERMEEVKI 112 (202)
Q Consensus 53 ------~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~ 112 (202)
++...+...+.......+.++||||... +......|+ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000011111011223578999999433 223445555 46899999999986432222222
Q ss_pred HHHHHHccCCCCCCcEEEEeeCCCCCCCcCH-HHHHHHhCchhhc-CcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 113 ELIKTIKNNDNFNVPILILANKQDLPNAIQI-KQIEKLLGLYELN-NMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 113 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
.+..+. ..+.|+++|+||+|+...... ..+.. ...+. .....+++++||++|.|++++++.+.+
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~---~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHT---TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHH---HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 222332 237899999999999764321 11111 11111 123467899999999999999998876
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.65 E-value=9.9e-17 Score=118.49 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=70.1
Q ss_pred ceEEEEEEcCCCCCchhhHH------hhhcCCCEEEEEEeCCCchhHHHHHH---HHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWK------SYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
.+.+.+|||||......... ..+.. +++|+++|.....+...... ....... ..+.|+++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEecccc
Confidence 35799999999765433211 24455 88888988754333222221 1111111 126899999999998
Q ss_pred CCCcCHHHHHHHhC-chh----------------------hcC-cceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 138 PNAIQIKQIEKLLG-LYE----------------------LNN-MHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~----------------------~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
........+...+. ... ... ....+++++||++++|+++++++|.+.+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 76533222222210 000 001 123478999999999999999999887653
No 202
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=107.14 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=83.6
Q ss_pred CCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHH---HHHHccCC-CCCCcEEEEeeCC-CCCCCcCHHHHHHHh
Q psy1315 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL---IKTIKNND-NFNVPILILANKQ-DLPNAIQIKQIEKLL 150 (202)
Q Consensus 76 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~pvivv~nK~-Dl~~~~~~~~~~~~~ 150 (202)
+|+..++.+|..|++++|++|||+|.+|.+.++ ....+ ..++.... ..+.|++|++||. |++......++...+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 478899999999999999999999998876554 44444 33343322 3589999999995 888888999999999
Q ss_pred CchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
.+... . ..+.+..|||++|+|+.+-++||.+.+..+
T Consensus 189 ~L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 189 HLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TGGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 88776 3 688999999999999999999998776543
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=6.7e-16 Score=126.90 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=108.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC--C-----C----cc------ccccceeeEeecccccccceEEEEEEcCCCCCch
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY--L-----N----TV------PTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR 82 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~--~-----~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 82 (202)
-+|+++|+.++|||||..+|+.... . . +. ...|.|.......+ ..+.+.++++||||+.+|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF-QWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCC-BCSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEE-EECCEEEEEEECCCcHHHH
Confidence 4799999999999999999963211 0 0 00 11134444333333 5567889999999999999
Q ss_pred hhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH---HHHHHhCch------
Q psy1315 83 PLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK---QIEKLLGLY------ 153 (202)
Q Consensus 83 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~---~~~~~~~~~------ 153 (202)
......++-+|++|+|+|+.+.-.-+ ....|...... ++|.++++||+|........ +++..+...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999998542222 23344444444 78999999999986643322 222211100
Q ss_pred -------------------------------------------------hhcCcceEEEEEeeeecCCCHHHHHHHHHHH
Q psy1315 154 -------------------------------------------------ELNNMHLYYIQATCAITGDGLHEGINELYQL 184 (202)
Q Consensus 154 -------------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (202)
.+....-.|++..||.++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 0001123678889999999999999998875
Q ss_pred HH
Q psy1315 185 IL 186 (202)
Q Consensus 185 ~~ 186 (202)
+.
T Consensus 237 ~p 238 (638)
T 3j25_A 237 FY 238 (638)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.60 E-value=3.7e-18 Score=123.46 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=87.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCC-ccccccceee--------------Eeecc------c---------c--c
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLN-TVPTIGFNCE--------------KVKGQ------I---------G--K 64 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~--------------~~~~~------~---------~--~ 64 (202)
.+.++|+++|.+|||||||+++|....+.. ..++++.... ...+. . . .
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 357899999999999999999998764322 1122211110 01100 0 0 0
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC--cC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA--IQ 142 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~ 142 (202)
.....+.++|++|.-... ..+-...+..+.++|..+...... ..... . ..|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~--~----~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI--M----KTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH--H----TTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH--h----hcCCEEEEeccccCchhHHH
Confidence 011246667777632111 111123456667777532111110 00011 1 4688999999998653 23
Q ss_pred HHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHH
Q psy1315 143 IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187 (202)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 187 (202)
.......+.. + ..+.+++++||++|.|++++|+++.+.+..
T Consensus 184 ~~~~~~~~~~--~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKR--I--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHH--H--CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--h--CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3344333321 1 235689999999999999999999887754
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=1.4e-14 Score=111.44 Aligned_cols=84 Identities=23% Similarity=0.201 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC--Cc-cccccceeeEeeccc------------cc----ccceEEEEEEcCCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL--NT-VPTIGFNCEKVKGQI------------GK----CKGINFLIWDVGGQEK 80 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~--~~-~~~~~~~~~~~~~~~------------~~----~~~~~~~~~D~~G~~~ 80 (202)
++|+++|.||||||||++++.+.... .+ ..|...+.....++- .. .....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999875421 11 112222222222210 00 1245799999999654
Q ss_pred c-------hhhHHhhhcCCCEEEEEEeCCC
Q psy1315 81 L-------RPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 81 ~-------~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
. ......+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2334556899999999999975
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.3e-14 Score=111.65 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=79.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC-------chhhHHhhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK-------LRPLWKSYTRC 91 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ 91 (202)
..+|+++|.|+||||||+|+|++.. ....+.+++|...+...+ ......++++|+||... ........++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~-~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVI-RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEE-EETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEE-EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 4689999999999999999999875 334444556665554444 55678899999999422 22334556788
Q ss_pred CCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCC
Q psy1315 92 TDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLP 138 (202)
Q Consensus 92 ~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 138 (202)
+|++++|+|++++..-. .+...+..... .....|.+++.||.|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGI--RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence 99999999999763322 22222222111 23367888999999974
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=1.1e-13 Score=115.22 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=80.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC--------------CCC---ccccccceee--Eeecccc----cccceEEEEE
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ--------------YLN---TVPTIGFNCE--KVKGQIG----KCKGINFLIW 73 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~--------------~~~---~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 73 (202)
++.-+|+|+|+.++|||||..+|+... +.+ .....|.|.. .+++... ..+.+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 466789999999999999999996321 100 0111122222 2222111 2346899999
Q ss_pred EcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCC
Q psy1315 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140 (202)
Q Consensus 74 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 140 (202)
||||+.+|.......++-+|++|+|+|+.+.-.... ...|...... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc----CCCeEEEEccccccCc
Confidence 999999999999999999999999999985433322 3344444444 7999999999998653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=2.7e-14 Score=108.96 Aligned_cols=167 Identities=13% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc------CCCC--Ccccc--------------ccc-----eeeEeec
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF------DQYL--NTVPT--------------IGF-----NCEKVKG 60 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~------~~~~--~~~~~--------------~~~-----~~~~~~~ 60 (202)
++........+...++++|++|||||||++.+.+ .... ...+. .+. .......
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 123 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS 123 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECC
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccC
Confidence 4455555667788999999999999999999973 2211 00000 000 0000000
Q ss_pred c-----------------cccccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCC
Q psy1315 61 Q-----------------IGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123 (202)
Q Consensus 61 ~-----------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (202)
. ........+.++||||...-. ......+|.+++++|....+....+....
T Consensus 124 ~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i--------- 191 (337)
T 2qm8_A 124 PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI--------- 191 (337)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------
T ss_pred cccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------
Confidence 0 001245679999999964322 23457899999999986433211111100
Q ss_pred CCCcEEEEeeCCCCCCCcC-----HHHHHHHhCchhh-cCcceEEEEEeeeecCCCHHHHHHHHHHHHH
Q psy1315 124 FNVPILILANKQDLPNAIQ-----IKQIEKLLGLYEL-NNMHLYYIQATCAITGDGLHEGINELYQLIL 186 (202)
Q Consensus 124 ~~~pvivv~nK~Dl~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 186 (202)
...|.++++||+|+..... ...+...+..... ...+..+++.+||+++.|++++++.|.+...
T Consensus 192 ~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 192 FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1246678889999754321 1112221111000 0012356888999999999999999988764
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=105.51 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=87.2
Q ss_pred cCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHH---HHHccC-CCCCCcEEEEeeC-CCCCCCcCHHHHHHH
Q psy1315 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELI---KTIKNN-DNFNVPILILANK-QDLPNAIQIKQIEKL 149 (202)
Q Consensus 75 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~-~~~~~pvivv~nK-~Dl~~~~~~~~~~~~ 149 (202)
.+|+...+.+|..|++++|++|+|+|.+|.+.++ ....+. .++... ...+.|++|.+|| .|++......++...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678999999999999999999999999887654 333222 333221 1348999999996 699988899999999
Q ss_pred hCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 150 LGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
+.+... . ..+.+..|||.+|+|+.+-++||.+.+..+
T Consensus 273 L~L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 988776 2 688999999999999999999999887544
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=3.7e-13 Score=101.25 Aligned_cols=111 Identities=22% Similarity=0.129 Sum_probs=80.7
Q ss_pred ccceEEEEEE-cCC-----CCCchhhHHhhhcCCCEEEEEEeCCCch-hHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 65 CKGINFLIWD-VGG-----QEKLRPLWKSYTRCTDGIIFVIDSTDVE-RMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 65 ~~~~~~~~~D-~~G-----~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
++.+.+..+| +.| ++++..+...+++++|++++|+|++++. ++..+.+|+..+... ++|+++|+||+|+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~----~~~~ilV~NK~DL 122 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF----KVEPVIVFNKIDL 122 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT----TCEEEEEECCGGG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC----CCCEEEEEEcccC
Confidence 4555666665 323 6778888888999999999999999886 888888887765543 7999999999999
Q ss_pred CCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHHHHHHH
Q psy1315 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182 (202)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (202)
.+............ +....+++++++||+++.|++++++.+.
T Consensus 123 ~~~~~v~~~~~~~~---~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNEEEKKELERWIS---IYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCHHHHHHHHHHHH---HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCccccHHHHHHHH---HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 76532111111111 1122356899999999999999998764
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=9.5e-13 Score=101.68 Aligned_cols=93 Identities=22% Similarity=0.149 Sum_probs=53.9
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cc--cccccceeeEeecccc------------cccceEEEEEEcCC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NT--VPTIGFNCEKVKGQIG------------KCKGINFLIWDVGG 77 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~G 77 (202)
.......++|+++|.+|+|||||+|++.+.... .. ..|...+...+.++-. ......+++||+||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 335567899999999999999999999987542 11 1222222222222100 00123599999999
Q ss_pred CCCchh-------hHHhhhcCCCEEEEEEeCCCch
Q psy1315 78 QEKLRP-------LWKSYTRCTDGIIFVIDSTDVE 105 (202)
Q Consensus 78 ~~~~~~-------~~~~~~~~~d~~ilv~d~~~~~ 105 (202)
.....+ .+..+++.+|++++|+|+.+.+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 765433 5678889999999999997543
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.20 E-value=3.3e-12 Score=98.59 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=75.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC-----CCCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hhH
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD-----QYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PLW 85 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~ 85 (202)
..+|+++|.+|+|||||+|+|++. ......+..++|.....+... . .+.++||||..... ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-S---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-T---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-C---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 468999999999999999999976 334445566677666665442 1 27899999943221 122
Q ss_pred Hhhh--cCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHH
Q psy1315 86 KSYT--RCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQI 146 (202)
Q Consensus 86 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 146 (202)
..++ ...++++++++....-.+..+.+ +......+.|+++++||.|..+.......
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~ 295 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKA 295 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGH
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHH
Confidence 2222 56899999998842211111111 11112337899999999998765443333
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=2.1e-11 Score=94.09 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC------CCCccccccceeeEeecccccccceEEEEEEcCCCCCch--------hh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ------YLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLR--------PL 84 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~ 84 (202)
..+|+++|.+|+|||||+|++++.. .....+..++|.....+... . .+.++||||..... ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-E---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-S---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-C---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4689999999999999999998753 22345666677666666442 1 27899999943211 11
Q ss_pred HHhh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHH
Q psy1315 85 WKSY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKL 149 (202)
Q Consensus 85 ~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 149 (202)
...+ ....+.++++++......+..+.. +......+.|+++++||.|..+........+.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~ 297 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADEL 297 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHH
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHH
Confidence 2222 255788899998742211111110 11112337899999999999876555544443
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=3.3e-10 Score=87.68 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc----cccceeeEeecccc---------cc-c--ceEEEEEEcCCC
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP----TIGFNCEKVKGQIG---------KC-K--GINFLIWDVGGQ 78 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~----~~~~~~~~~~~~~~---------~~-~--~~~~~~~D~~G~ 78 (202)
......+|+++|.+|+|||||+|+|.+.......+ |...+...+.+.-. .. . ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45567899999999999999999999866422222 22222222222100 00 0 135899999993
Q ss_pred -------CCchhhHHhhhcCCCEEEEEEeCCC
Q psy1315 79 -------EKLRPLWKSYTRCTDGIIFVIDSTD 103 (202)
Q Consensus 79 -------~~~~~~~~~~~~~~d~~ilv~d~~~ 103 (202)
+.+...+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2344456677889999999999864
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=3.8e-10 Score=87.98 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCC--c-cccccceeeEeeccccc-ccceEEEEEEcCCCCCc-------------
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN--T-VPTIGFNCEKVKGQIGK-CKGINFLIWDVGGQEKL------------- 81 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~------------- 81 (202)
.++++|+|++|+|||||++.+.+..+.. . ....+.+...+.+.... .-...+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4569999999999999999999875421 1 11123233333332211 11236889999984321
Q ss_pred -hhhHHhhh-------------cC--CCEEE-EEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHH
Q psy1315 82 -RPLWKSYT-------------RC--TDGII-FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIK 144 (202)
Q Consensus 82 -~~~~~~~~-------------~~--~d~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 144 (202)
...+..++ .. .|+++ ++.|... .+......+...+. .+.|+|+|.||+|........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 11111111 11 23444 4445542 23222222333332 378999999999987654444
Q ss_pred HH
Q psy1315 145 QI 146 (202)
Q Consensus 145 ~~ 146 (202)
.+
T Consensus 196 ~l 197 (427)
T 2qag_B 196 KF 197 (427)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=4.3e-10 Score=89.68 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=86.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh------cCCCC-----Ccccc-----------ccceeeEeecc----------c--
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK------FDQYL-----NTVPT-----------IGFNCEKVKGQ----------I-- 62 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~------~~~~~-----~~~~~-----------~~~~~~~~~~~----------~-- 62 (202)
.+...|+++|.+||||||++++|. +.+.. .+.+. .++........ +
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999997 33321 01110 01111111000 0
Q ss_pred ccccceEEEEEEcCCCCCch-hhHH---hh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcE-EEEeeCC
Q psy1315 63 GKCKGINFLIWDVGGQEKLR-PLWK---SY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI-LILANKQ 135 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~-~~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pv-ivv~nK~ 135 (202)
.....+.+.++||||..... .++. .+ ...+|.+++|+|+......... ...+ .. ..|+ ++|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence 01145689999999965321 1111 11 2268999999999764332221 1111 11 2464 8889999
Q ss_pred CCCCCcCH-HHHHHHhCchh--------hcC-cceEEEEEeeeecCCC-HHHHHHHHHHH
Q psy1315 136 DLPNAIQI-KQIEKLLGLYE--------LNN-MHLYYIQATCAITGDG-LHEGINELYQL 184 (202)
Q Consensus 136 Dl~~~~~~-~~~~~~~~~~~--------~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 184 (202)
|....... -.+........ +.. ....+.+++|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98754321 11222211100 000 0011234578999999 99999998765
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.99 E-value=2.6e-09 Score=83.21 Aligned_cols=169 Identities=14% Similarity=0.051 Sum_probs=89.4
Q ss_pred hhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccc--ccc--ceeeEeecccccccceEEEEEEcCCCCC----chh
Q psy1315 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVP--TIG--FNCEKVKGQIGKCKGINFLIWDVGGQEK----LRP 83 (202)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~ 83 (202)
+.........++++|++|+|||||+|.+.+-..+.... ..+ .+...+.+. ......+.++|++|... ...
T Consensus 62 L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q--~~~~~~ltv~D~~g~~~~~~~~~~ 139 (413)
T 1tq4_A 62 LKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--HPNIPNVVFWDLPGIGSTNFPPDT 139 (413)
T ss_dssp HHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE--CSSCTTEEEEECCCGGGSSCCHHH
T ss_pred hhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc--ccccCCeeehHhhcccchHHHHHH
Confidence 33334456689999999999999999999853321110 001 111111111 11122578999998421 111
Q ss_pred hHH-hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCC---------CCcCHHHHHHHhCch
Q psy1315 84 LWK-SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP---------NAIQIKQIEKLLGLY 153 (202)
Q Consensus 84 ~~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~---------~~~~~~~~~~~~~~~ 153 (202)
... ..+...+..++ ++...... .-......+... +.|+++|.||.|+. +......+...+...
T Consensus 140 ~L~~~~L~~~~~~~~-lS~G~~~k--qrv~la~aL~~~----~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 140 YLEKMKFYEYDFFII-ISATRFKK--NDIDIAKAISMM----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHTTGGGCSEEEE-EESSCCCH--HHHHHHHHHHHT----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCccCCeEE-eCCCCccH--HHHHHHHHHHhc----CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 111 12333455554 66652111 111111222222 68999999999863 122333333333211
Q ss_pred h---h-cC-cceEEEEEeee--ecCCCHHHHHHHHHHHHHHHH
Q psy1315 154 E---L-NN-MHLYYIQATCA--ITGDGLHEGINELYQLILKKR 189 (202)
Q Consensus 154 ~---~-~~-~~~~~~~~~Sa--~~~~~v~~l~~~l~~~~~~~~ 189 (202)
. + .. .....++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1 0 01 12235788899 566779999999988875554
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=9.3e-10 Score=81.36 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCCCCcc-------cccc-ceeeEeecccc-cccceEEEEEEcCCCCC-------ch
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTV-------PTIG-FNCEKVKGQIG-KCKGINFLIWDVGGQEK-------LR 82 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~-~~~~~~~~~~D~~G~~~-------~~ 82 (202)
.++++++|++|+|||||++.+.+...+... +... .....+.+... ..-...+.++|++|... +.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999875432111 0000 01111222110 11223688999998321 00
Q ss_pred hh-------HHh--------------hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc
Q psy1315 83 PL-------WKS--------------YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141 (202)
Q Consensus 83 ~~-------~~~--------------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 141 (202)
.. ... .+..++++++++|... ..+......+...+.. ..++|+|.+|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 001 1223688899998542 2222222222222232 38999999999987654
Q ss_pred CH
Q psy1315 142 QI 143 (202)
Q Consensus 142 ~~ 143 (202)
..
T Consensus 157 e~ 158 (270)
T 3sop_A 157 EK 158 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.92 E-value=6.4e-10 Score=81.88 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
++++++|.+|+|||||+|++.+.....+.++.|+|.....+.. ...+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL----ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC----TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe----CCCEEEEECCCcc
Confidence 7999999999999999999998877666777776654433322 2357899999954
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=1.6e-09 Score=80.56 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEEcCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHH--HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHH
Q psy1315 72 IWDVGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERME--EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK 148 (202)
Q Consensus 72 ~~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 148 (202)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+.+....+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHHHHHHHH
Confidence 34568865 45567777889999999999999887654 222221 3789999999999987433323333
Q ss_pred HhCchhhcCcceEEEEEeeeecCCCHHHHHHHHHHHHHHH
Q psy1315 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 188 (202)
++ ...+++++++||.++.|++++++.+.+.+...
T Consensus 74 ~~------~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 74 HF------ENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HH------HTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HH------HhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22 12345789999999999999999988877644
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=1.5e-09 Score=83.79 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYEL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~ 155 (202)
..+.|...+..+.+.++++++|+|+.++. ..|...+... ..+.|+++|+||+|+.... ....+...+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~--~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY--S 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH--H
Confidence 35778899999999999999999998743 2232233222 2278999999999996543 23333332211 1
Q ss_pred cCcceE---EEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNMHLY---YIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
....++ +++++||++|.|++++++.+.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 112233 789999999999999999987643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=1.8e-09 Score=80.36 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=38.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 79 (202)
....++++++|.||+|||||+|++.+.....+.+..++|.....+.. ...+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCCEEEEECcCcC
Confidence 35678999999999999999999998876666677676655543322 2258899999953
No 223
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.78 E-value=4.6e-09 Score=81.08 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCc-CHHHHHHHhCchhh
Q psy1315 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI-QIKQIEKLLGLYEL 155 (202)
Q Consensus 77 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~ 155 (202)
.++.|.+.+..+.+.++++++|+|+.++.+ .|...+... ..+.|+++|+||+|+.... ....+...+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~~--~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMRR--M 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHHH--H
Confidence 377899999999999999999999998763 122222221 2278999999999997543 23333333211 0
Q ss_pred cCcce---EEEEEeeeecCCCHHHHHHHHHHHH
Q psy1315 156 NNMHL---YYIQATCAITGDGLHEGINELYQLI 185 (202)
Q Consensus 156 ~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~ 185 (202)
....+ ..++.+||++|.|++++++.+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 11222 3789999999999999999987654
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=1.2e-07 Score=74.36 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=63.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc------CCC-----CCccc-----------cccceeeEeeccc------------c
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF------DQY-----LNTVP-----------TIGFNCEKVKGQI------------G 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~------------~ 63 (202)
++..|+++|.+|+||||++..|.. .+. +...+ ..++......... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988853 111 01111 1122221111100 0
Q ss_pred cccceEEEEEEcCCCCCchhh----HH--hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCC
Q psy1315 64 KCKGINFLIWDVGGQEKLRPL----WK--SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 137 (202)
....+.+.++||+|....... .. .....+|.+++|+|+.......... ...... -.+..||.||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 113367899999994332211 11 1133589999999997543322222 222222 2356788999997
Q ss_pred CCC
Q psy1315 138 PNA 140 (202)
Q Consensus 138 ~~~ 140 (202)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.60 E-value=1.4e-07 Score=76.55 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCCCC-Cccccc-cceeeEeec--ccccccceEEEEEEcCCCC
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTI-GFNCEKVKG--QIGKCKGINFLIWDVGGQE 79 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~D~~G~~ 79 (202)
.+..+.....+...|+|+|.||+|||||+|+|++.... ....+. +.+.....+ +........+.++||||..
T Consensus 27 al~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 27 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 34445555667899999999999999999999987642 232222 222222221 1112345678999999943
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.44 E-value=2.9e-07 Score=75.50 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+|+|+.|||||||++.+.+-.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3459999999999999999998864
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=5.7e-08 Score=71.47 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=60.7
Q ss_pred cCCCC-CchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCch
Q psy1315 75 VGGQE-KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLY 153 (202)
Q Consensus 75 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 153 (202)
.||+. .........+.++|+++.|+|+.++.+..... ... . ++|.++|+||+|+.+......+..++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~l-l--~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VDF-S--RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SCC-T--TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HHh-c--CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 36654 33456777889999999999999876554311 011 1 789999999999987533333333221
Q ss_pred hhcCcceEEEEEeeeecCCCHHHHHHHHHH
Q psy1315 154 ELNNMHLYYIQATCAITGDGLHEGINELYQ 183 (202)
Q Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (202)
..+.++ .+||+++.|++++++.+.+
T Consensus 73 ----~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ----KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 123456 8999999999999887654
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=1.4e-06 Score=68.49 Aligned_cols=113 Identities=26% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC------CC-----CCcccc-----------ccceeeEe--------ec---ccccc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD------QY-----LNTVPT-----------IGFNCEKV--------KG---QIGKC 65 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~------~~-----~~~~~~-----------~~~~~~~~--------~~---~~~~~ 65 (202)
...|+++|.+|+||||+++.|... +. +.+.+. .++..... .. .+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999998652 11 000000 01100000 00 00012
Q ss_pred cceEEEEEEcCCCCCchhhHH----hh--hcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCC-c-EEEEeeCCCC
Q psy1315 66 KGINFLIWDVGGQEKLRPLWK----SY--TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV-P-ILILANKQDL 137 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~~~~~~~----~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-vivv~nK~Dl 137 (202)
..+.+.++||||......... .. +..+|.+++|+|+..... ....... ... .. | ..+|.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~-~~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKA-FKE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHH-HHT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHH-Hhh----cccCCeEEEEeCCCC
Confidence 456789999999654322111 11 225899999999865432 1212212 121 34 5 8899999997
Q ss_pred CC
Q psy1315 138 PN 139 (202)
Q Consensus 138 ~~ 139 (202)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.27 E-value=1.3e-07 Score=75.31 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=56.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCCCCCccccccceeeEeecccccccceEEEEEEcCCCCC--chhhH--------H
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK--LRPLW--------K 86 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~ 86 (202)
.....|+++|.+||||||+.++|.........++..+......... .+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999875432111222222211111111 11223346788888632 22232 5
Q ss_pred hhhcCCCEEEEEEeCCCchhHHHHHHHHHH
Q psy1315 87 SYTRCTDGIIFVIDSTDVERMEEVKIELIK 116 (202)
Q Consensus 87 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 116 (202)
.++....+.++|+|.++. ....-..|+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~ 144 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNF 144 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHH
Confidence 566667888999999876 44443434333
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=2.4e-07 Score=69.48 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=59.6
Q ss_pred chhhHHhhhcCCCEEEEEEeCCCchhHH-HHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcC----HHHHHHHhCchhh
Q psy1315 81 LRPLWKSYTRCTDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQ----IKQIEKLLGLYEL 155 (202)
Q Consensus 81 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~ 155 (202)
-..+....+.++|.+++|+|+.+|..-. .+.+++...... ++|.++|+||+|+.+... ...+...+
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~----~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----- 146 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN----DIQPIICITKMDLIEDQDTEDTIQAYAEDY----- 146 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT----TCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC----CCCEEEEEECCccCchhhhHHHHHHHHHHH-----
Confidence 3345556789999999999998765433 333333333222 789999999999987633 22222221
Q ss_pred cCcceEEEEEeeeecCCCHHHHHHH
Q psy1315 156 NNMHLYYIQATCAITGDGLHEGINE 180 (202)
Q Consensus 156 ~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (202)
...+++++.+||.++.|++++++.
T Consensus 147 -~~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 147 -RNIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp -HHHTCCEEECCHHHHTTCTTTGGG
T ss_pred -HhCCCeEEEEecCCCCCHHHHHhh
Confidence 123468899999999988877654
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=1.4e-05 Score=62.76 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc------CCC-----CCcc-----------ccccceeeEeecc------------cc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF------DQY-----LNTV-----------PTIGFNCEKVKGQ------------IG 63 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~------~~~-----~~~~-----------~~~~~~~~~~~~~------------~~ 63 (202)
+..-|+++|++||||||++..|.. .+. +.+. ...+......... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 456789999999999999998852 111 0000 1112211111000 00
Q ss_pred cccceEEEEEEcCCCCC--ch----hhHHh--hhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCC
Q psy1315 64 KCKGINFLIWDVGGQEK--LR----PLWKS--YTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135 (202)
Q Consensus 64 ~~~~~~~~~~D~~G~~~--~~----~~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~ 135 (202)
....+.+.++||||... .. ..... ....++.+++|+|+............+.. . -.+..||.||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~----~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A----SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H----CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c----cCCcEEEEecc
Confidence 12356788999999533 11 11111 12246999999999754333232222222 1 24577899999
Q ss_pred CCCC
Q psy1315 136 DLPN 139 (202)
Q Consensus 136 Dl~~ 139 (202)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9763
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.12 E-value=5.4e-06 Score=62.00 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=51.9
Q ss_pred cceEEEEEEcCCCCC--chh-hHH-----hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCCC
Q psy1315 66 KGINFLIWDVGGQEK--LRP-LWK-----SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQD 136 (202)
Q Consensus 66 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~D 136 (202)
..+.+.++||||... ... +.. .....+|.+++|+|+..... .......... ..| ..+|.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456789999999765 322 211 12346899999999864322 2222222211 245 678899999
Q ss_pred CCCCcCHHHHHHHhCchhhcCcceEEEEEeeeecCCCHHHH
Q psy1315 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177 (202)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (202)
..... ....... ...+.|+.+++ .|++++++
T Consensus 251 ~~~~~--g~~~~~~------~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAKG--GGALSAV------AATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTTH--HHHHHHH------HTTTCCEEEEE--CSSSTTCE
T ss_pred CCcch--HHHHHHH------HHHCcCEEEEe--CCCChhhc
Confidence 65321 1111111 22345666655 57777554
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.05 E-value=8.3e-06 Score=62.37 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=55.3
Q ss_pred hhcCCCEEEEEEeCCCchh-HHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCCCcCHHHHHHHhCchhhcCcceEEEEEe
Q psy1315 88 YTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166 (202)
Q Consensus 88 ~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
...++|.+++|.+.. |.. ...+.+++...... ++|+++|+||+|+.+.......+..+. .+ ...+++++.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~----~~~~iivlNK~DL~~~~~~~~~~~~~~--~y-~~~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL----QVEPLIVLNKIDLLDDEGMDFVNEQMD--IY-RNIGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH----TCEEEEEEECGGGCCHHHHHHHHHHHH--HH-HTTTCCEEEC
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc----CCCEEEEEECccCCCchhHHHHHHHHH--HH-HhCCCcEEEE
Confidence 468899999887764 443 33344444333333 688899999999987533111222221 11 2345678999
Q ss_pred eeecCCCHHHHHHHH
Q psy1315 167 CAITGDGLHEGINEL 181 (202)
Q Consensus 167 Sa~~~~~v~~l~~~l 181 (202)
||.++.|++++...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999887643
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.95 E-value=1.2e-05 Score=63.37 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.--|+|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 446677899999999999999999863
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.81 E-value=1.4e-05 Score=55.53 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.76 E-value=6.5e-05 Score=59.06 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=61.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh-------cCCCC-----Ccccc-----------ccceeeEee------------ccc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK-------FDQYL-----NTVPT-----------IGFNCEKVK------------GQI 62 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~-------~~~~~-----~~~~~-----------~~~~~~~~~------------~~~ 62 (202)
+...|+++|.+|+||||++..|. +.+.. .+.+. .++...... +..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35678899999999999998885 22210 11110 011111100 000
Q ss_pred ccccceEEEEEEcCCCCCchh-hHH-----hhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCc-EEEEeeCC
Q psy1315 63 GKCKGINFLIWDVGGQEKLRP-LWK-----SYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP-ILILANKQ 135 (202)
Q Consensus 63 ~~~~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-vivv~nK~ 135 (202)
.....+.+.++||||...... ... ..+..++.+++|+|+........ ....... ..+ .-+|.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 011456789999999654322 211 12346899999999875433222 1212111 223 34688999
Q ss_pred CCCCC
Q psy1315 136 DLPNA 140 (202)
Q Consensus 136 Dl~~~ 140 (202)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.68 E-value=3.5e-05 Score=54.46 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++.+.......+...|+|+|++|||||||++.+.+.
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444566789999999999999999988754
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.66 E-value=7.5e-05 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=2.7e-05 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.62 E-value=1.6e-05 Score=57.17 Aligned_cols=42 Identities=26% Similarity=0.157 Sum_probs=18.9
Q ss_pred CCcchHHHHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhh-cC
Q psy1315 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLK-FD 42 (202)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~-~~ 42 (202)
||...+.......-...+.--++++|++|||||||++.+. +.
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5655555544444444455679999999999999999998 54
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=4.5e-05 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999764
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.49 E-value=5.2e-05 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.48 E-value=8.2e-05 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.--|+|+|++|+|||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446899999999999999999854
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=7.8e-05 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.-.|+++|++|||||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456999999999999999999875
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.41 E-value=7.6e-05 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999764
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=7.8e-05 Score=51.69 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=3.3e-05 Score=57.88 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.-.++++|++|||||||+|.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 45899999999999999999987643
No 248
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.39 E-value=0.00031 Score=49.17 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=46.0
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccC-CCCCCcEEEEeeCCCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN-DNFNVPILILANKQDLPN 139 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~ 139 (202)
.+.+.++|+|+.. .......+..+|.+|++...+... ......+..+.... ...+.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4678999999865 345556677799999999887533 45444444443221 123567799999998543
No 249
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.39 E-value=0.00014 Score=52.75 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..++.+.|++.|++||||||+.+.|..
T Consensus 25 ~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 25 LSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999863
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.39 E-value=0.00017 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.--|+++|++|||||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998653
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.37 E-value=8.8e-05 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q psy1315 20 VHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~ 40 (202)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999754
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.37 E-value=9.4e-05 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.--++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999764
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.33 E-value=0.00011 Score=52.38 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.-.++|+|++|||||||++.+.+-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344556899999999999999999764
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.33 E-value=0.00011 Score=52.48 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.--++++|+.|||||||++.+.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 344578999999999999999998643
No 255
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.31 E-value=0.00045 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
.-.|+++|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468889999999999998875
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.26 E-value=0.00033 Score=49.12 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.2
Q ss_pred hHHHHHHhhc-CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 5 SAAFFENLQA-SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..++.+.+.. ......-|+++|++|||||||++.+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443 245567899999999999999998864
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.25 E-value=0.00016 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999988754
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00017 Score=48.76 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.+.-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455579999999999999999998764
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00019 Score=48.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHh
Q psy1315 20 VHIVMLGLDSAGKTTALYRL 39 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l 39 (202)
+-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 260
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.00034 Score=52.07 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...+...|+|+|++|||||||++.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999988754
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=0.00017 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..|+++|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.22 E-value=0.00019 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|+++|+.|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988653
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.21 E-value=0.00022 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+++|++|||||||++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999997654
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.20 E-value=0.00019 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.0002 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999753
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00021 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.0003 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3789999999999999999998654
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.19 E-value=0.00019 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999988754
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.0002 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 270
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.18 E-value=0.00035 Score=52.27 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+....-...+.=.++|+|++|+|||||++.+.+
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 444455566777899999999999999999875
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00023 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00022 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.16 E-value=0.00023 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=0.00059 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQYL 45 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~~ 45 (202)
-.++++|++|||||||+|.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 36899999999999999999876543
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.00026 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhh
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~ 40 (202)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.13 E-value=0.00025 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.13 E-value=0.00024 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..=.++++|+.|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998754
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.13 E-value=0.00022 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.13 E-value=0.00025 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458999999999999999998754
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.13 E-value=0.00028 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.-.|+++|++|||||||++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.12 E-value=0.00029 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997753
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00028 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+...|++.|.+||||||+++.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 283
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.12 E-value=0.0019 Score=45.53 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=46.1
Q ss_pred cceEEEEEEcCCC-CCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCCCCC
Q psy1315 66 KGINFLIWDVGGQ-EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139 (202)
Q Consensus 66 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 139 (202)
..+.+.++|+|+. ... .....+..+|.+|++...+. .++......+..+.... +.++.+|.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3567899999986 432 34456678999999998753 45555555554443321 466889999998654
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.11 E-value=0.00031 Score=49.60 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.11 E-value=0.00027 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 286
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00035 Score=49.12 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=25.0
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-+.......|+++|++|||||||++.|.+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344556678999999999999999999764
No 287
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00032 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.171 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.10 E-value=0.00027 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 289
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.09 E-value=0.00032 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 290
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.09 E-value=0.00032 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|||||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988754
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.08 E-value=0.00028 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.=.++++|++|||||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34457999999999999999998763
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.08 E-value=0.00029 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 33468999999999999999988754
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.00034 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.08 E-value=0.00033 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998753
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00031 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|+++|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 296
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.07 E-value=0.00042 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+.|++.|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998864
No 297
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.00085 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-.++++|++|+|||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 468999999999999999998 543
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.07 E-value=0.00034 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 299
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.00025 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.-.++++|++|+|||||++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988754
No 300
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00031 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.06 E-value=0.00044 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+++.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 302
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.06 E-value=0.0045 Score=46.21 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=44.1
Q ss_pred ceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEE-EEeeCCCC
Q psy1315 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL-ILANKQDL 137 (202)
Q Consensus 67 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl 137 (202)
.+.+.++|+|+..... .....+..+|.+|++...+ ..++..+...+..+.......+.+++ +|.|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4778999998754322 2234567799999999775 34566665555554442223356655 88999983
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00035 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 304
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.00032 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.06 E-value=0.00037 Score=50.47 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....-...+...|+++|+.|||||||++.+.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444455677899999999999999998865
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.05 E-value=0.00038 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 307
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.05 E-value=0.00033 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999988754
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00033 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.05 E-value=0.00025 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.05 E-value=0.00034 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999885
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.05 E-value=0.00036 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.-.|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3445899999999999999998864
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.04 E-value=0.00037 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|++.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 313
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.04 E-value=0.00034 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.04 E-value=0.00037 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999998753
No 315
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.03 E-value=0.00026 Score=56.87 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
..-.++|+|++|||||||++.+.+--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34459999999999999999998643
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.00037 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|+|.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00042 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.02 E-value=0.00051 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988654
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.02 E-value=0.00036 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.02 E-value=0.00037 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999885
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00045 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+..-|+|+|++|||||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 566788999999999999999998764
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.01 E-value=0.0004 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00036 Score=48.27 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.99 E-value=0.00039 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.99 E-value=0.00037 Score=49.65 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.=-++++|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999976
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.98 E-value=0.00041 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468999999999999999987753
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00041 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00051 Score=47.99 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+...|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998764
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00047 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 330
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.98 E-value=0.00047 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.97 E-value=0.00049 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 332
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.97 E-value=0.002 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..+..=|+|+|..++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3455667799999999999999664
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.00051 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.96 E-value=0.00043 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
+.=-++++|++|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34468999999999999999887
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.00052 Score=48.01 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|+++|++|||||||++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988653
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.00067 Score=48.22 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988854
No 337
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.00076 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998764
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.95 E-value=0.00048 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|+|.|.+||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.0002 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00054 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.93 E-value=0.00053 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998765
No 342
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.92 E-value=0.00077 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.........|++.|++|+|||++++.+...
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3333333455678999999999999999988654
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.92 E-value=0.00062 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.91 E-value=0.00063 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+-|+++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999998864
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.00024 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.91 E-value=0.00061 Score=47.99 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 347
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.0011 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988654
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.91 E-value=0.00051 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.00039 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998764
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.00078 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+...|+++|.+||||||+++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 351
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00051 Score=46.93 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+++|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.89 E-value=0.00062 Score=49.50 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998854
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00063 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.|+|.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=0.00047 Score=53.02 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCCc--ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 15 SGSS--SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 15 ~~~~--~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.... .-+++|+|++|+|||||++.+.+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445 5689999999999999999988653
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.0007 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|++.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998764
No 356
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.86 E-value=0.0004 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=.++++|+.|||||||++.+.+-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3447899999999999999988764
No 357
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.0008 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+...|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998863
No 358
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.85 E-value=0.00065 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=.++++|+.|+|||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999987753
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.84 E-value=0.00077 Score=50.07 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....-|++.|++||||||+++.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999964
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.84 E-value=0.00061 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357999999999999999998754
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.82 E-value=0.0006 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999998754
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.82 E-value=0.00079 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+...|+++|++|||||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999998763
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.81 E-value=0.00077 Score=46.63 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00083 Score=48.19 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.81 E-value=0.00091 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
+...|+++|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999987
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.79 E-value=0.00072 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
No 367
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.78 E-value=0.00074 Score=51.72 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3458899999999999999998753
No 368
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.78 E-value=0.00074 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458999999999999999988754
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.77 E-value=0.00094 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+.|+|.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00086 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.76 E-value=0.0009 Score=46.42 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 372
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.76 E-value=0.00078 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3357999999999999999998754
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.76 E-value=0.00078 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.-.++++|++|||||||++.+.+--
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998753
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.00079 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457999999999999999998754
No 375
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.75 E-value=0.00076 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998764
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.74 E-value=0.0011 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.-.|+++|+.|||||||++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999863
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.74 E-value=0.00067 Score=49.38 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.......|+++|.+||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998854
No 378
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.73 E-value=0.0012 Score=50.98 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 8 ~~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
++..........-.++++|++|+|||||++.+.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444444556667899999999999999999875
No 379
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.73 E-value=0.00083 Score=48.91 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999854
No 380
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.73 E-value=0.00086 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999998754
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.72 E-value=0.0009 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.72 E-value=0.0009 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++++|.+|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998753
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.71 E-value=0.00082 Score=51.60 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.++++|+.|||||||++.+.+-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34458999999999999999999875
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.71 E-value=0.00093 Score=45.94 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 385
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.71 E-value=0.00089 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467999999999999999998754
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.70 E-value=0.0013 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 387
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.70 E-value=0.0061 Score=43.80 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=43.2
Q ss_pred ccceEEEEEEcCCCCCchhhHHhhhcCCCEEEEEEeCCCchhHHHHHHHHHHHHccCCCCCCcEEEEeeCCC
Q psy1315 65 CKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136 (202)
Q Consensus 65 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pvivv~nK~D 136 (202)
...+.+.++|+|+.... .....+..+|.+|++...+. .++..+.......... . -..+.+|.|+.+
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~-~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL-G--IKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH-T--CSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc-C--CccEEEEEeCCC
Confidence 34678899999875432 44566688999999998853 4555554443322222 1 245788899998
No 388
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.69 E-value=0.00086 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.--++++|+.|||||||++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999864
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.69 E-value=0.00093 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.=.++|+|++|||||||++.+.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999999763
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00071 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=16.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0011 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.68 E-value=0.0011 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
No 393
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.67 E-value=0.0013 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=20.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.-.+++.|+||+|||+++.++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 33345699999999999998877754
No 394
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.67 E-value=0.00085 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998764
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.66 E-value=0.0004 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.0015 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999988653
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.65 E-value=0.0012 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.64 E-value=0.001 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||++.+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999874
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.63 E-value=0.0013 Score=44.98 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998865
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.63 E-value=0.0012 Score=47.22 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+..-|+|.|+.|||||||++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999998765
No 401
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.62 E-value=0.001 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
=-++|+|++|||||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998764
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.61 E-value=0.00072 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.218 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=-++++|+.|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 368999999999999999998754
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|||||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999998764
No 404
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.60 E-value=0.0014 Score=45.63 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..++.|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999999988643
No 405
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.013 Score=45.99 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445668999999999999999998754
No 406
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.58 E-value=0.0012 Score=48.72 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998764
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0017 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhh
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 408
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.55 E-value=0.00082 Score=44.40 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....|++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999877654
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0016 Score=45.88 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+..-|+++|.+||||||+++.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998864
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.52 E-value=0.0013 Score=48.96 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+.=-++++|++|+|||||+..+.+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 334446899999999999999988653
No 411
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.51 E-value=0.0014 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.+|+|+.|+|||||+..+...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998653
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.50 E-value=0.00071 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.=-++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.49 E-value=0.0015 Score=46.08 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....--++++|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33445689999999999999999986
No 414
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.49 E-value=0.0016 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0015 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.--++++|+.|||||||++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999999864
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0017 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-.|+++|.+||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999998854
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.46 E-value=0.0016 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...--++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557899999999999999999873
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0036 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988653
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0016 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.++++|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998753
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.44 E-value=0.0023 Score=45.81 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.....-|+|.|.+||||||+++.+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998653
No 421
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.44 E-value=0.0022 Score=47.70 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.-+++.|+||+|||+|++.+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567888899999999999988754
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0019 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
No 423
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0016 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...--|+|+|+.|||||||++.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3455799999999999999999854
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0016 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....-.++|+|+.|||||||++.+.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 445668999999999999999998764
No 425
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.39 E-value=0.0018 Score=49.35 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=25.1
Q ss_pred cCCCcccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
-...+.=+++++|+.|+|||||++.+.+...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444566899999999999999999987643
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.36 E-value=0.0023 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++.+|+|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 578999999999999999998854
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0021 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 428
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0018 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
--++++|..|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0031 Score=45.25 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
......|+++|.+||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.25 E-value=0.0029 Score=42.14 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q psy1315 22 IVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++|+.|+|||||+.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999753
No 431
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.24 E-value=0.0054 Score=46.88 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=23.2
Q ss_pred hcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.......-.+++.|++|+|||+|++.+...
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 333333468999999999999999998643
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.24 E-value=0.0033 Score=46.86 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
......+++.|++|+|||+|++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999986653
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0028 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998754
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.21 E-value=0.0025 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||+..+.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998875
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.20 E-value=0.0026 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0033 Score=46.32 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999998754
No 437
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.19 E-value=0.0027 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999987653
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.19 E-value=0.0025 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
=.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5689999999999999999865
No 439
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.18 E-value=0.0029 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 440
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.17 E-value=0.0048 Score=46.61 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
......+++.|++|+|||+|++.+...
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344557999999999999999998643
No 441
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.16 E-value=0.0036 Score=45.38 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.....+++.|++|+|||+|++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.15 E-value=0.0047 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4457999999999999999988753
No 443
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.15 E-value=0.0041 Score=45.37 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
.....+++.|++|+|||+|++.+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 345789999999999999999987543
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0038 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=-++++|+.|+|||||++.+.+...
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34589999999999999999987543
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.14 E-value=0.0029 Score=49.80 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+..+ -...+.=+++++|+.|+|||||++.+.+..
T Consensus 148 ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 148 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444 445566689999999999999999998764
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.13 E-value=0.0035 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
...|+++|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998653
No 447
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.12 E-value=0.0067 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
......+++.|++|+|||+|++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999999999988753
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.11 E-value=0.0032 Score=51.49 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999987653
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.10 E-value=0.0034 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 450
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.0031 Score=47.06 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44557999999999999999998754
No 451
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.07 E-value=0.0051 Score=46.91 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHhhcC--CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 6 AAFFENLQAS--GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 6 ~~~~~~~~~~--~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+++..+... .....+|+++|++|+||||+.+.+..
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444444332 23456899999999999999987643
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0044 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.=.++++|+.|+|||||++.+.+-..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34689999999999999999987543
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.03 E-value=0.0028 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34478999999999999999987653
No 454
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.02 E-value=0.0031 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344579999999999999999887653
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0038 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--++++|++|+|||||+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999877753
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0037 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-|+++|.+||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999998753
No 457
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.01 E-value=0.0036 Score=46.69 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
+.-.|+++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999875
No 458
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.00 E-value=0.0036 Score=44.75 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=19.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 15 SGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...+..-|+|.|.+||||||+++.+..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999998864
No 459
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.99 E-value=0.0036 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...--+.++|++|+|||||+..+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999999764
No 460
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.052 Score=38.67 Aligned_cols=28 Identities=14% Similarity=-0.066 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+++.+=|++-|+++.|||+|++++++..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 3344445555999999999999999874
No 461
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.96 E-value=0.0088 Score=47.33 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
...........-.+++.|+||+|||+|++.+..
T Consensus 53 ~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 334444444556899999999999999998854
No 462
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.96 E-value=0.0055 Score=43.70 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+..-|++.|.+||||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 463
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.95 E-value=0.0027 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34478999999999999999887643
No 464
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.013 Score=45.39 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||.|++++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344567999999999999999999754
No 465
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.95 E-value=0.0032 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..+...|+++|.+|||||||++.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 345678999999999999999998754
No 466
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.93 E-value=0.0061 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
..=.++++|+.|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 445789999999999999999987543
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.93 E-value=0.0069 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988654
No 468
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0038 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.90 E-value=0.0057 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999998753
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.90 E-value=0.0061 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 471
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0056 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhc
Q psy1315 21 HIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~ 41 (202)
++++.|++|+|||||++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.89 E-value=0.0045 Score=46.01 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988643
No 473
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.89 E-value=0.0046 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHhh
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLK 40 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~ 40 (202)
..+ ++++|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999986
No 474
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.88 E-value=0.0028 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=17.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998854
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.88 E-value=0.0036 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999988764
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.009 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
No 477
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0071 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcCC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFDQ 43 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~~ 43 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.87 E-value=0.0047 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 479
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.0046 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.--|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 44688999999999999998853
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.87 E-value=0.0057 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~ 42 (202)
+.|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0048 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhc
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.0057 Score=46.85 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...-.+++.|++|+|||+|++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999988753
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.85 E-value=0.0047 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.84 E-value=0.0067 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
.++++|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 485
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.83 E-value=0.0051 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 486
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.81 E-value=0.005 Score=46.46 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.|++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999998754
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.81 E-value=0.0036 Score=45.66 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 17 SSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 17 ~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
++...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988654
No 488
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0048 Score=48.35 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344556999999999999999998754
No 489
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.016 Score=45.36 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+--|++.|+||+|||+|++++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 344567999999999999999999754
No 490
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.78 E-value=0.0049 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
....+++.|++|+|||+|++.+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 491
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0052 Score=48.22 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=22.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
...+-.|++.|+||+|||+|++++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345568999999999999999998754
No 492
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.74 E-value=0.0067 Score=45.65 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998653
No 493
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.74 E-value=0.014 Score=42.65 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHhhcCC-CcccEEEEEcCCCCCHHHHHHHhhc
Q psy1315 10 ENLQASG-SSSVHIVMLGLDSAGKTTALYRLKF 41 (202)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKssL~~~l~~ 41 (202)
..+.... .+.-.+++.|+||+|||.|+..+..
T Consensus 94 ~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3343333 4456799999999999999998875
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.73 E-value=0.0066 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 19 SVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 19 ~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988643
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.72 E-value=0.0067 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 20 VHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 20 ~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998754
No 496
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.015 Score=45.96 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 16 GSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 16 ~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
....--|++.|+||+|||+|++++.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 455678999999999999999998754
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.006 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHhhcCCC
Q psy1315 22 IVMLGLDSAGKTTALYRLKFDQY 44 (202)
Q Consensus 22 i~v~G~~~~GKssL~~~l~~~~~ 44 (202)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987643
No 498
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.68 E-value=0.0063 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhcC
Q psy1315 21 HIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 21 ~i~v~G~~~~GKssL~~~l~~~ 42 (202)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5889999999999999999644
No 499
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.66 E-value=0.01 Score=44.39 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHhhcCCCcccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 9 FENLQASGSSSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
.+.+.........|++.|++|+|||++++.+...
T Consensus 15 ~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 15 LNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp HHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 3333333455678999999999999999988653
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.013 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHhhcC
Q psy1315 18 SSVHIVMLGLDSAGKTTALYRLKFD 42 (202)
Q Consensus 18 ~~~~i~v~G~~~~GKssL~~~l~~~ 42 (202)
..-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999988753
Done!