RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1315
(202 letters)
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 237 bits (607), Expect = 8e-81
Identities = 69/184 (37%), Positives = 110/184 (59%), Gaps = 6/184 (3%)
Query: 7 AFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK 66
+ L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ +
Sbjct: 4 SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-----SQ 58
Query: 67 GINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
G +WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ V
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
P+LI ANKQDL A +I + L L+ + + ++ IQ+ A+TG+G+ +G+N + + +
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNVN 177
Query: 187 KKRK 190
K+K
Sbjct: 178 AKKK 181
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 235 bits (601), Expect = 8e-80
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 11/176 (6%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ ++ LGLD+AGKTT L+ LK D+ PT E++ I F +D+
Sbjct: 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA-----IGNIKFTTFDL 74
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG + R LWK Y +GI+F++D+ D ER +E ++EL + +VP +IL NK
Sbjct: 75 GGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKI 134
Query: 136 DLPNAIQIKQIEKLLGLYELNNM------HLYYIQATCAITGDGLHEGINELYQLI 185
D PNA+ ++ LGL + + +G E L Q I
Sbjct: 135 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 233 bits (597), Expect = 2e-79
Identities = 80/170 (47%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQD 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLPN
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ +I LGL+ L + +YIQATCA +GDGL+EG++ L + ++
Sbjct: 116 AMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 234 bits (598), Expect = 3e-79
Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ + +WD+GGQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 77
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DLP
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ K++ + + L + + + D + + L Q +R
Sbjct: 138 GALDEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQHSKSRR 187
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 232 bits (594), Expect = 7e-79
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ + I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+
Sbjct: 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT-----YKNLKFQVWDL 58
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG +RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQ
Sbjct: 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 118
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
D+ A+ ++ LGL L + + I T A G GL E + L + + ++
Sbjct: 119 DMEQAMTSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 232 bits (595), Expect = 7e-79
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 9/195 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG + ++++GLD+AGKTT LY+ ++ ++T PTIG N E++
Sbjct: 1 MGILFTRIWRLF---NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV- 56
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
FL+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + +
Sbjct: 57 ----INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
D +LI ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGLEW 171
Query: 181 LYQLILKKRKLQKTN 195
+ + + + +
Sbjct: 172 MMSRLKIRLEHHHHH 186
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 232 bits (593), Expect = 1e-78
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 8/187 (4%)
Query: 1 MGKNSAAFFE--NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKV 58
MG + L GS ++++GLD+AGKTT LY+ ++ ++T PTIG N E++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 59 KGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
FL+WD+GGQE LR W +Y T+ +I V+DSTD ER+ + EL K +
Sbjct: 61 V-----INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 115
Query: 119 KNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGI 178
+ D +LI ANKQD+ + + +I + L L + + H ++IQA CA+TG+GL +G+
Sbjct: 116 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGL 174
Query: 179 NELYQLI 185
+ +
Sbjct: 175 EWMMSRL 181
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 230 bits (590), Expect = 3e-78
Identities = 73/192 (38%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 1 MGKNSAAFFENLQA-SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVK 59
MG A+ + L + ++MLGLD+AGKT+ LYRL + TVPT+G N E ++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 60 GQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIK 119
K I+F +WD+GGQ +RP W+ Y TD +I+V+DSTD +RM K EL +
Sbjct: 63 -----YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD 117
Query: 120 NNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
++ +LI ANKQDLP+A +I + LG+ + N + I + + TGDGL EG++
Sbjct: 118 EDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMD 176
Query: 180 ELYQLILKKRKL 191
L + + +++ L
Sbjct: 177 WLVERL-REQGL 187
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 229 bits (587), Expect = 8e-78
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 8/191 (4%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
MG ++ F+ L S + + I++LGLD AGKTT LYRL+ + + T PTIGFN E +
Sbjct: 1 MGNIFSSMFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS- 58
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + +WD+GGQ +RP W+ Y T +IFV+DSTD +RM EL ++
Sbjct: 59 ----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + +L+ ANKQD P A+ ++ K L L EL + + I A+ AI G+G+ EG++
Sbjct: 115 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDW 173
Query: 181 LYQLILKKRKL 191
L +I K+ +L
Sbjct: 174 LIDVI-KEEQL 183
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 228 bits (584), Expect = 3e-77
Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + ++ +G IWDVGGQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE-----HRGFKLNIWDVGGQK 73
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
A+ I++ L L + + H + IQ A+TG+ L GI+ L I +
Sbjct: 134 ALSCNAIQEALELDSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 228 bits (584), Expect = 4e-77
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 12/188 (6%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
G + F + G + I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+
Sbjct: 17 RG----SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE- 69
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K I F +WDVGGQ+K+RPLW+ Y + T G+IFV+DS D ER++E EL K ++
Sbjct: 70 ----YKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
++ + +L+ ANKQD+PNA+ + ++ LGL L + +Y+QATCA G GL++G++
Sbjct: 126 DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDW 184
Query: 181 LYQLILKK 188
L + K+
Sbjct: 185 LSHELSKR 192
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 225 bits (577), Expect = 4e-76
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFD--QYLNTVPTIGFNCEKVKGQIGKCKGI 68
L GS VH++ LGLD++GKTT + +LK Q N +PTIGF+ EK K +
Sbjct: 13 GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK-----SSSL 67
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND--NFNV 126
+F ++D+ GQ + R LW+ Y + IIFVIDS+D RM K EL + + D + +
Sbjct: 68 SFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI 127
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
PIL ANK DL +A+ ++ +LL L + + ++I A+ AI G+GL EG++ L I
Sbjct: 128 PILFFANKMDLRDAVTSVKVSQLLCLENIKD-KPWHICASDAIKGEGLQEGVDWLQDQI- 185
Query: 187 KKRK 190
+ K
Sbjct: 186 QTVK 189
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 233 bits (596), Expect = 4e-75
Identities = 78/196 (39%), Positives = 121/196 (61%), Gaps = 6/196 (3%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
++A+ ++ + + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E V
Sbjct: 304 ALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT- 362
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN 120
K + F +WDVGGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I +
Sbjct: 363 ----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 418
Query: 121 NDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ + ILI ANKQDLP+A++ +I++ LGL + + +Y+Q +CA +GDGL+EG+
Sbjct: 419 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTW 477
Query: 181 LYQLILKKRKLQKTNK 196
L K +
Sbjct: 478 LTSNYKSKLAAALEHH 493
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 222 bits (567), Expect = 1e-74
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
+ +V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+
Sbjct: 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELT-----IAGMTFTTFDL 76
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GG + R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK
Sbjct: 77 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 136
Query: 136 DLPNAIQIKQIEKLLGLYELN-----------NMHLYYIQATCAITGDGLHEGINELYQL 184
D P AI +++ ++ GLY N + + G EG + Q
Sbjct: 137 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196
Query: 185 I 185
I
Sbjct: 197 I 197
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 223 bits (569), Expect = 4e-73
Identities = 80/171 (46%), Positives = 119/171 (69%), Gaps = 6/171 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQ 219
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+K+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
NA+ +I LGL+ L + +YIQATCA +GDGL+EG++ L + ++
Sbjct: 280 NAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 186 bits (473), Expect = 4e-60
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
SS ++ +GL +GKT RL QY +T +I + K + +G + + D+
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK--VNNNRGNSLTLIDLP 62
Query: 77 GQEKLRP-LWKSYTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFN--VPILILA 132
G E LR L + ++FV+DS +R +++V L + + ++ +LI
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122
Query: 133 NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
NKQD+ A K I++ L ELN + + A +
Sbjct: 123 NKQDIAMAKSAKLIQQQLEK-ELNTLRVTRSAAPSTLDSSSTAPA 166
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 176 bits (449), Expect = 1e-56
Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 22/188 (11%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLN-----------TVPTIGFNCEKVKGQIGKCKG 67
+ IV G +GKTT L + T+ F+ + K
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNF--- 124
F ++ V GQ K R DGI+FV DS R+ + +N +
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLT 132
Query: 125 --NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
+VPI+I NK+DLP+A+ ++ + ++ + + A G G+ E + E+
Sbjct: 133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-----KFPVLEAVATEGKGVFETLKEVS 187
Query: 183 QLILKKRK 190
+L+L +
Sbjct: 188 RLVLARVA 195
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 161 bits (408), Expect = 2e-50
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 15/152 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
GS I++ G ++GKT+ L L D TV + G + D
Sbjct: 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVD 97
Query: 75 VGGQEKLRPLWKSY----TRCTDGIIFVIDS-TDVERMEEVKIELIKTIKNNDNF---NV 126
G KLR Y + G+IF++DS D +++ L+ + ++ +
Sbjct: 98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNM 158
ILI NK +L A +I+ L E+ +
Sbjct: 158 DILIACNKSELFTARPPSKIKDALES-EIQKV 188
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 159 bits (403), Expect = 2e-49
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 15/184 (8%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
S I++ G ++GKT+ L L D TV + G + D
Sbjct: 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVD 61
Query: 75 VGGQEKLRPLWKSY----TRCTDGIIFVIDS-TDVERMEEVKIELIKTIKNNDNF---NV 126
G KLR Y + G+IF++DS D +++ L+ + ++ +
Sbjct: 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
ILI NK +L A +I+ L E+ + ++ + E E +L
Sbjct: 122 DILIACNKSELFTARPPSKIKDALES-EIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180
Query: 187 KKRK 190
+
Sbjct: 181 QSTD 184
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 119 bits (298), Expect = 1e-33
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNN-DNFNVPIL 129
G + + P + DG I+V ++ +R E ++ + P+L
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 130 IL-ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+L Q + + L L LN H + +Q T A T G GI + + + K
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVESK 224
Query: 189 RK 190
R
Sbjct: 225 RA 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 110 bits (276), Expect = 1e-29
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTI-KNNDNFNVPILI 130
G + + P + DG I+V ++ +R E ++ + P+L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 131 LA-NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
L+ Q + + L L LN H + +Q T A T G GI + + + KR
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN--HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 100 bits (249), Expect = 9e-27
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 22 IVMLGLDSAGKTT----ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
I+++GL +GK++ +++ ++ L T + + +NF IWD G
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS----SFVNFQIWDFPG 78
Query: 78 QEKLRPLW---KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
Q + R T +I+VID+ D ++ + + N ++ + +K
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 135 QDL 137
D
Sbjct: 139 VDG 141
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 91.2 bits (226), Expect = 2e-22
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 22 IVMLGLDSAGKTT----ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +GK++ TI ++ + +WD GG
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL----GNMTLNLWDCGG 61
Query: 78 QEK-----LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN--VPILI 130
Q+ + +I V D E +++++ K +K ++ I +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFV 120
Query: 131 LANKQDLPNAIQIKQI 146
L +K DL + +++
Sbjct: 121 LLHKMDLVQLDKREEL 136
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 80.5 bits (199), Expect = 2e-19
Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 6/172 (3%)
Query: 22 IVMLGLDSAGKTTALYRL---KFDQYLNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVG 76
++++G +GKTT L +L K T+G ++ + + + + +WD
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
G+E+ + + V D + + + + IK + + P++++ D
Sbjct: 65 GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLD 123
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + Q K + LN I+ + + + +L + I+ +
Sbjct: 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 74.3 bits (182), Expect = 7e-16
Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKC-------KGINFLIW 73
+ ++G AGKT+ L +L + + T G N + K K F W
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D GGQE + + + + + ++DS ++ I+ P++++ N
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YWLRHIEKYGG-KSPVIVVMN 158
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
K D + I+Q +K+ + + GDG+ L +L +
Sbjct: 159 KIDENPSYNIEQ-KKINERFPAIENRFHR---ISCKNGDGVESIAKSLKSAVLHPDSIYG 214
Query: 194 T 194
T
Sbjct: 215 T 215
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 68.4 bits (168), Expect = 8e-15
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKC 65
ENL G + +V++G GK+ +L + +++ PTI + K + G+
Sbjct: 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 71
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDN 123
I D GQE+ + Y R +G + V + + ++ + E IK +K++D+
Sbjct: 72 D-----ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126
Query: 124 FNVPILILANKQDLPN 139
VP++++ NK DLP
Sbjct: 127 --VPMVLVGNKCDLPT 140
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 68.1 bits (167), Expect = 2e-14
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 8/179 (4%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
I ++G D GKTT + R+ ++ N T+G V + I F +WD GQE
Sbjct: 14 ICLIG-DGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
K L Y G I D T + + +K + PI++ ANK D+ N
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMN 198
Q + ++ + + N + A T L ++ + L + +N
Sbjct: 132 R-QKISKKLVMEVLKGKNYEYF---EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 69.7 bits (170), Expect = 2e-14
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQY-----LNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
++++G+ GK++ + ++ F L T + E I + + ++
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTLI------DLAVMELP 54
Query: 77 GQEKLRPLW---KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
GQ + + +++VIDS D + +I N ++ I +L +
Sbjct: 55 GQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIH 114
Query: 134 KQDL 137
K D
Sbjct: 115 KVDG 118
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 67.0 bits (164), Expect = 5e-14
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 14/174 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V++G GKTT + R ++ V T+G + I F +WD GQ
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---RGPIKFNVWDTAGQ 74
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
EK L Y I + D T + V + + N+PI++ NK D+
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCE-NIPIVLCGNKVDIK 132
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
+ K K + + N+ Y A + + L + ++ L+
Sbjct: 133 DR---KVKAKSIVFHRKKNLQYY---DISAKSNYNFEKPFLWLARKLIGDPNLE 180
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 65.7 bits (161), Expect = 1e-13
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFL 71
GS+ +V++G D GK+ +L + +++ PTI + K + G+
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----- 55
Query: 72 IWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPIL 129
I D GQE+ + Y R +G + V + + E++ E IK +K++++ VP++
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMV 113
Query: 130 ILANKQDLPN 139
++ NK DLP+
Sbjct: 114 LVGNKCDLPS 123
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 64.6 bits (158), Expect = 2e-13
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
IV+ G D+A GK++ L RL +++ N T+G F ++K I + +WD G
Sbjct: 31 IVLAG-DAAVGKSSFLMRLCKNEFRENISATLGVDF---QMKTLIVDGERTVLQLWDTAG 86
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + KSY R DG++ + D T + ++ E + I++ + VPI+++ NK D+
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADI 145
Query: 138 PNAIQIKQ 145
+ +
Sbjct: 146 RDTAATEG 153
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 64.7 bits (158), Expect = 4e-13
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V LG S GKT+ + R +D + NT TIG F + + + + + +WD G
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM--YLED-RTVRLQLWDTAGL 75
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 139 N 139
+
Sbjct: 135 D 135
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 63.5 bits (155), Expect = 6e-13
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 33/194 (17%)
Query: 15 SGSSSVHIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGIN 69
+G ++ IV++G D A GKT L + VPT+ N K K +
Sbjct: 19 NGKKALKIVVVG-DGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-----EEFI 72
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+WD GQE +LRPL SY +D ++ + + + + IK+ +
Sbjct: 73 LHLWDTAGQEEYDRLRPL--SYAD-SDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TA 128
Query: 127 PILILANKQDL----PNAIQIKQIEKL---LGLYELNNMHLYYIQATCAITGDGLHEGIN 179
+++ K DL + + ++ + L LG YI+ ++ GL+E
Sbjct: 129 KTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA-------YIE-ASSVAKIGLNEVFE 180
Query: 180 ELYQLILKKRKLQK 193
+ I + + K
Sbjct: 181 KSVDCIFSNKPVPK 194
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 63.0 bits (154), Expect = 8e-13
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V++G GK+ + +++ PTI + K + Q + D
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILD-----VLDTA 74
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE+ + + Y R DG + V TD E V +LI +K+ ++ P++++ANK
Sbjct: 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES--FPMILVANK 132
Query: 135 QDLPNAIQIKQIE 147
DL + ++ + +
Sbjct: 133 VDLMHLRKVTRDQ 145
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 62.5 bits (152), Expect = 9e-13
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG ++A GK++ + R + + N PTIG F ++V I + + F IWD G
Sbjct: 6 LVLLG-EAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRV--TINEHT-VKFEIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + V D T + + + +K + + ++ I ++ NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDX 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ + G L + + T A TG E +N+++ I +K
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFE-TSAKTG----ENVNDVFLGIGEK 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 61.7 bits (151), Expect = 2e-12
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V++G GK+ +L + +++ PTI + K + G+ I D
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLD-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE+ + Y R +G + V + + E++ E IK +K++D+ VP++++ NK
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMVLVGNK 117
Query: 135 QDLPN 139
DL
Sbjct: 118 SDLAA 122
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 62.2 bits (152), Expect = 2e-12
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+ +LG D+ GK++ + R D + N PTIG F + V G + FLIWD G
Sbjct: 26 VCLLG-DTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--PCGN-ELHKFLIWDTAG 81
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + + V D T + +K + +K +K + N+ + I NK DL
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDL 140
Query: 138 PN 139
+
Sbjct: 141 SD 142
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 61.8 bits (151), Expect = 2e-12
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG--FNCEKVKGQIGKCKGINFLIWDVGGQ 78
+V LG S GKT+ + R +D + NT TIG F K + + + +WD GQ
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---LSKTMYLEDRTVRLQLWDTAGQ 73
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ R L SY R + + V D T+ + + I ++ +V I+++ NK DL
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 139 N 139
+
Sbjct: 133 D 133
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 61.8 bits (151), Expect = 2e-12
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFL--IWDVGG 77
+V++G GK+ + +++ PTI K GI I D G
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED--SYTK-IC-SVDGIPARLDILDTAG 66
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANKQ 135
QE+ + + Y R G + V D + EV I +K+ D+ P++++ NK
Sbjct: 67 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKA 124
Query: 136 DLPN 139
DL +
Sbjct: 125 DLES 128
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 61.7 bits (151), Expect = 2e-12
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG + GKT+ + R +++ + T+G F +K+ IG K +N IWD G
Sbjct: 9 VVLLG-EGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL--NIGG-KRVNLAIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R ++G I V D TD + ++VK +K ++ + + I+ NK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDL 123
Query: 138 PN 139
Sbjct: 124 EK 125
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 62.2 bits (152), Expect = 2e-12
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 74
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 132
Query: 135 QDLPN 139
DL +
Sbjct: 133 SDLED 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 61.8 bits (151), Expect = 2e-12
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKC 65
ENL G V++ +LG AGK+ + ++++ P + V Q
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQP--- 68
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDN 123
++ + D + R + Y + V + + +EL+
Sbjct: 69 --VHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125
Query: 124 FNVPILILANKQDL 137
++P L+L NK D+
Sbjct: 126 RSIPALLLGNKLDM 139
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 61.9 bits (151), Expect = 3e-12
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +S+ GKT+ L+R D + V T+G F KVK K + IWD G
Sbjct: 26 LLIIG-NSSVGKTSFLFRYADDTFTPAFVSTVGIDF---KVKTVYRHEKRVKLQIWDTAG 81
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G I + D T+ E V+ + IK N ++++ NK D+
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDM 140
Query: 138 PNAIQIKQIE 147
+ +
Sbjct: 141 EEERVVPTEK 150
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 61.4 bits (150), Expect = 3e-12
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 12/176 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++LG DS GKT+ ++R D+Y TIG F ++V + K +WD G
Sbjct: 11 VIILG-DSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEV--TVDGDKVATMQVWDTAG 67
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANK 134
QE+ + L ++ R D + V D T+ E +K E + N P +IL NK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
D + +I + L + + T A + E+ + L++ +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLF--LTSAKNAINVDTAFEEIARSALQQNQ 181
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 61.0 bits (149), Expect = 3e-12
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLI 72
S+ + + G GK++ + R + + +PT+ + I + I
Sbjct: 1 SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQ-----I 55
Query: 73 WDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILI 130
D G + + + I V T + +EE+K E I IK + ++PI++
Sbjct: 56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIML 114
Query: 131 LANKQDLPN 139
+ NK D
Sbjct: 115 VGNKCDESP 123
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 61.0 bits (149), Expect = 4e-12
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G DS GK+ L R D++ + + TIG F K+K K + IWD G
Sbjct: 6 ILLIG-DSGVGKSCLLVRFVEDKFNPSFITTIGIDF---KIKTVDINGKKVKLQIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D+
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + G + + +I+ + A D ++E L +LI +K
Sbjct: 121 ET----RVVTADQGEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEK 166
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 61.0 bits (149), Expect = 4e-12
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--F--------NCEKVKGQIGKCKGIN 69
IV+LG D A GKT+ + + TIG F V QI
Sbjct: 9 IVVLG-DGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI------- 60
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVP 127
WD+GGQ + Y G++ V D T+ + E ++ ++K +
Sbjct: 61 ---WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 128 ILILANKQDLPN 139
+ ++ NK DL +
Sbjct: 118 VALVGNKIDLEH 129
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 61.0 bits (149), Expect = 4e-12
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINF 70
S S I +LG S GK++ + Q++++ PTI K V GQ +
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQ---- 57
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+ D GQ++ ++Y+ +G I V T ++ E +K + + +PI
Sbjct: 58 -LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ--IPI 114
Query: 129 LILANKQDLPN 139
+++ NK+DL
Sbjct: 115 MLVGNKKDLHM 125
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 60.6 bits (148), Expect = 4e-12
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GK+ + ++ PTI K V + I D
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLE-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
G E+ + Y + G I V + + +++K + I +K + VP++++ NK
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK--VPVILVGNK 117
Query: 135 QDLPNAIQIKQIE 147
DL + ++ E
Sbjct: 118 VDLESEREVSSSE 130
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 60.6 bits (148), Expect = 4e-12
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+ +LG D+ GK++ ++R D + N PTIG F K + + FLIWD G
Sbjct: 9 VCLLG-DTGVGKSSIMWRFVEDSFDPNINPTIGASF---MTKTVQYQNELHKFLIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R L Y R + I V D T E +K ++ ++ + ++ + I NK DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 138 PN 139
+
Sbjct: 124 TD 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 61.1 bits (149), Expect = 4e-12
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK+ L R D Y + + TIG F K++ K I IWD G
Sbjct: 36 LLLIG-DSGVGKSCLLLRFADDTYTESYISTIGVDF---KIRTIELDGKTIKLQIWDTAG 91
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 150
Query: 138 PNAIQIKQIE 147
+
Sbjct: 151 TTKKVVDYTT 160
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 61.1 bits (149), Expect = 4e-12
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
IV++G ++ GKT + R + TIG F +K + + IWD G
Sbjct: 29 IVLIG-NAGVGKTCLVRRFTQGLFPPGQGATIGVDF---MIKTVEINGEKVKLQIWDTAG 84
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R + +I D T E + E ++ I+ + V +++ NK DL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDL 143
Query: 138 PNAIQIKQIE 147
++ Q
Sbjct: 144 AERREVSQQR 153
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 61.1 bits (149), Expect = 5e-12
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK+ L R D Y + + TIG F K++ K I IWD G
Sbjct: 19 LLLIG-DSGVGKSCLLLRFADDTYTESYISTIGVDF---KIRTIELDGKTIKLQIWDTAG 74
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + SY R GII V D TD E VK + ++ I + NV L++ NK DL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDL 133
Query: 138 PNAIQIKQIE 147
+
Sbjct: 134 TTKKVVDYTT 143
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 60.6 bits (148), Expect = 5e-12
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 118
Query: 135 QDLPNAIQIKQIE 147
DL + Q+ E
Sbjct: 119 SDLEDKRQVSVEE 131
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 61.1 bits (149), Expect = 5e-12
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 5 SAAFFENLQASGSSS---VHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK--- 57
ENL + V + + G GK+ + R +++ PT+
Sbjct: 11 VDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT 70
Query: 58 VKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELI 115
+ ++ ++ I D GQE + + R +G + V D TD EEV ++
Sbjct: 71 IDDEV-----VSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124
Query: 116 KTIKNNDNFNVPILILANKQDLPNAIQI 143
IK N V ++++ NK DL ++ Q+
Sbjct: 125 DEIKKPKN--VTLILVGNKADLDHSRQV 150
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 60.7 bits (148), Expect = 5e-12
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G +S+ GKT+ L+R D + V T+G F KVK K I IWD G
Sbjct: 25 LLLIG-NSSVGKTSFLFRYADDSFTPAFVSTVGIDF---KVKTVYRHDKRIKLQIWDTAG 80
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G + + D + E V+ + IK N ++++ NK DL
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDL 139
Query: 138 PNAIQIKQIE 147
+ + +
Sbjct: 140 EDERVVPAED 149
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 61.2 bits (149), Expect = 6e-12
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G DS GK+ L R D++ + + TIG F K+K K + +WD G
Sbjct: 23 ILLIG-DSGVGKSCLLVRFVEDKFNPSFITTIGIDF---KIKTVDINGKKVKLQLWDTAG 78
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R GII V D TD +K + KT+ + N +L++ NK D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKM 197
+ + G + + +I+ + A D ++E L +LI +K K +
Sbjct: 138 ET----RVVTADQGEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192
Query: 198 NKVKK 202
K+
Sbjct: 193 GNGKE 197
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 60.7 bits (148), Expect = 7e-12
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G +S+ GKT+ L+R D + V T+G F KVK K I IWD G
Sbjct: 11 ILIIG-NSSVGKTSFLFRYADDSFTPAFVSTVGIDF---KVKTIYRNDKRIKLQIWDTAG 66
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G I + D T+ E V+ + IK N +L++ NK D+
Sbjct: 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDM 125
Query: 138 PNAIQIKQIE 147
+ +
Sbjct: 126 EDERVVSSER 135
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 60.7 bits (148), Expect = 7e-12
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
++M+G GK+ + +D+++ PT + K + G+ + I D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDTA 70
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQE + +Y R +G + V T++E E I +K ++N VP L++ NK
Sbjct: 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNK 128
Query: 135 QDLPN 139
DL +
Sbjct: 129 SDLED 133
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 60.2 bits (147), Expect = 7e-12
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG +SA GK++ + R Q+ TIG F + V + + F IWD G
Sbjct: 9 LVLLG-ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV--CLDD-TTVKFEIWDTAG 64
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R I V D T+ E K +K ++ + N+ I + NK DL
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADL 123
Query: 138 PN 139
N
Sbjct: 124 AN 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 60.3 bits (147), Expect = 9e-12
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G DS GK+ L R +++ L + TIG F + K I IWD G
Sbjct: 32 VVLIG-DSGVGKSNLLSRFTRNEFNLESKSTIGVEF---ATRSIQVDGKTIKAQIWDTAG 87
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 146
Query: 138 PN 139
+
Sbjct: 147 RH 148
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 60.4 bits (147), Expect = 9e-12
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G DS GK+ L R +++ L + TIG F + Q+ K I IWD G
Sbjct: 8 VVLIG-DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QVDG-KTIKAQIWDTAG 63
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 122
Query: 138 PN 139
+
Sbjct: 123 RH 124
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 60.6 bits (147), Expect = 9e-12
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINF 70
++ V++G + GKT L + + +PT+ N V G K +N
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPVNL 80
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY + TD + E V+ + ++++ N P
Sbjct: 81 GLWDTAGQEDYDRLRPL--SYPQ-TDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTP 136
Query: 128 ILILANKQDLPN 139
I+++ K DL +
Sbjct: 137 IILVGTKLDLRD 148
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 59.9 bits (146), Expect = 1e-11
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G DS GKT L+R D + + TIG + +++K QI
Sbjct: 11 LLLIG-DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +Y R GI+ V D T+ + + ++ I+ I+ + + +V +I
Sbjct: 62 --WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMI 118
Query: 131 LANKQDLPNAIQIKQIE 147
L NK D+ + Q+ +
Sbjct: 119 LGNKCDVNDKRQVSKER 135
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 60.3 bits (147), Expect = 1e-11
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+ G GK++ + R + +T +PTI + + + I D
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQ-----ITDTT 64
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANK 134
G + + + I V T + +EE+ +LI IK + ++P++++ NK
Sbjct: 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNK 123
Query: 135 QDLP 138
D
Sbjct: 124 CDET 127
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 59.4 bits (145), Expect = 1e-11
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GK+ + ++ PTI + K V Q + I D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLE-----ILDTA 59
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANK 134
G E+ + Y + G V T +++ E I +K+ ++ VP++++ NK
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED--VPMILVGNK 117
Query: 135 QDLPN 139
DL +
Sbjct: 118 CDLED 122
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 59.9 bits (146), Expect = 1e-11
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G GKT+ + R D + T+G +K++ QI
Sbjct: 29 VIIIG-SRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI-------- 79
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ + +Y R GII V D T E +++ + +K I + + +L+
Sbjct: 80 --WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLL 136
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK D +I + +
Sbjct: 137 VGNKLDCETDREITRQQ 153
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 59.9 bits (146), Expect = 1e-11
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G +S GKT L R +++ ++ TIG F + + + IWD G
Sbjct: 28 VVLIG-ESGVGKTNLLSRFTRNEFSHDSRTTIGVEF---STRTVMLGTAAVKAQIWDTAG 83
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
E+ R + +Y R G + V D T + V+ +K + ++ + ++++ NK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDL 142
Query: 138 PN 139
Sbjct: 143 SQ 144
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 59.7 bits (145), Expect = 1e-11
Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 25/177 (14%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINF 70
S S + V +G + GKT L + + VPT+ N V G +N
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG-----ATVNL 58
Query: 71 LIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD GQE +LRPL SY D I E V + I +K+ VP
Sbjct: 59 GLWDTAGQEDYNRLRPL--SYRG-ADVFILAFSLISKASYENVSKKWIPELKHYAP-GVP 114
Query: 128 ILILANKQDL---PNAIQIKQIEKLLGLYELNNM-----HLYYIQATCAITGDGLHE 176
I+++ K DL + + + YI+ + + + +
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE-CSSKSQENVKG 170
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 59.6 bits (145), Expect = 1e-11
Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 30/185 (16%)
Query: 21 HIVMLGLDSAGKTTALYRL---KFDQYLNTVPTIGFNCEK---VKGQIGKCKGINFLIWD 74
+ +LG +GK++ ++R + T +K V GQ LI +
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVL---EKTESEQYKKEMLVDGQT-----HLVLIRE 60
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIK--NNDNFNVPILI 130
G + ++ D +IFV D + V + +++ + ++
Sbjct: 61 EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 131 LANKQDLPN--AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ + + + L ++ Y T A G + E+ Q ++
Sbjct: 116 TQDRISASSPRVVGDARARALXA--DMKRCSYY---ETXATYGLNVDRVFQEVAQKVVTL 170
Query: 189 RKLQK 193
RK Q+
Sbjct: 171 RKQQQ 175
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 59.5 bits (145), Expect = 2e-11
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG-FNCE-KVKGQIGKCKGINFLIWDVGG 77
+ ++G S+GK+ ++R Y+ P G F E V GQ LI D GG
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS-----YLLLIRDEGG 76
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQ 135
+L+ + D ++FV D + V + + +N VP++++ +
Sbjct: 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE--VPMVLVGTQD 129
Query: 136 DLPNAIQIKQIEKLLGL---YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ A + I+ +L Y + TCA G + ++ Q ++ RK
Sbjct: 130 AISAANP-RVIDDSRARKLSTDLKRCT--YYE-TCATYGLNVERVFQDVAQKVVALRK 183
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 59.6 bits (145), Expect = 2e-11
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V++G D++ GKT + R K + TIG F +K + K + IWD G
Sbjct: 32 LVLVG-DASVGKTCVVQRFKTGAFSERQGSTIGVDF---TMKTLEIQGKRVKLQIWDTAG 87
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R +G I D T V I+ ++ N+ L++ NK DL
Sbjct: 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 138 PNAIQIKQIE 147
++ E
Sbjct: 147 SELREVSLAE 156
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 59.6 bits (145), Expect = 2e-11
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++++G +S GK+ L R D Y + + TIG + + VK QI
Sbjct: 11 LLLIG-NSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + SY R + GII V D TD E VK ++ I V L+
Sbjct: 62 --WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLL 118
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + ++
Sbjct: 119 VGNKCDLKDKRVVEYDV 135
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 59.1 bits (144), Expect = 2e-11
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQYL--NTVPTIG---------FNCEKVKGQIGKCKGIN 69
++++G DS GKT L R K +L + T+G + KVK Q+
Sbjct: 13 VMLVG-DSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM------- 64
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE+ R + +Y R ++ + D T+ + ++ + I +V ++
Sbjct: 65 ---WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALM 120
Query: 130 ILANKQDLPNAIQIKQIE 147
+L NK D + +K+ +
Sbjct: 121 LLGNKVDSAHERVVKRED 138
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 59.1 bits (144), Expect = 2e-11
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+V+LG D GK++ + R DQ+ TIG F + + + + F IWD G
Sbjct: 15 LVLLG-DVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTL--AVND-ATVKFEIWDTAG 70
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R I V D T+ E K + ++ ++ N N+ + + NK DL
Sbjct: 71 QERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDL 129
Query: 138 PN 139
+
Sbjct: 130 LD 131
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 59.2 bits (144), Expect = 3e-11
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G + GK+ L++ +++ ++ TIG F V +G K + IWD G
Sbjct: 28 FLVIG-SAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV--NVGG-KTVKLQIWDTAG 83
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R G + V D T E + + + + N+ +++ NK+DL
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDL 142
Query: 138 PNAIQIKQIE 147
++ +E
Sbjct: 143 DPEREVTFLE 152
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 59.3 bits (144), Expect = 3e-11
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 15 SGSSSVHIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGIN 69
S S + V +G D A GKT L +++ +PT+ N V GQI +N
Sbjct: 5 SVSKFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQI-----VN 58
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+WD GQE +LRPL SY R D + E V + + ++ NV
Sbjct: 59 LGLWDTAGQEDYSRLRPL--SY-RGADIFVLAFSLISKASYENVLKKWMPELRR-FAPNV 114
Query: 127 PILILANKQDL----------PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
PI+++ K DL N I Q E+L ++ YI+ + T +
Sbjct: 115 PIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL--RKQIGAAA--YIE-CSSKTQQNVKA 169
Query: 177 GINELYQLILKKRKLQKTNKMNKVKK 202
+ +++L+ + ++ + K +
Sbjct: 170 VFDTAIKVVLQPPRRKEVPRRRKNHR 195
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 58.3 bits (142), Expect = 4e-11
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIG---------FNCEKVKGQIGKCKGINF 70
+V++G + A GK++ + R + TIG N E V+ +
Sbjct: 8 MVVVG-NGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML-------- 58
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ + K+Y R + V +TD E E + + + ++P +
Sbjct: 59 --WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVG-DIPTAL 114
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + IK E
Sbjct: 115 VQNKIDLLDDSCIKNEE 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 58.9 bits (143), Expect = 5e-11
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
IV++G DS GK+ L R +++ +++ TIG +++K QI
Sbjct: 16 IVLIG-DSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI-------- 66
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +Y R G + V D + E + ++ N + NV + +
Sbjct: 67 --WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGL 123
Query: 131 LANKQDLPNAIQIKQIE 147
+ NK DL + + E
Sbjct: 124 IGNKSDLAHLRAVPTEE 140
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 58.0 bits (141), Expect = 5e-11
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G D+ GK+ L + ++ TIG F V I K I IWD G
Sbjct: 24 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV--NIDG-KQIKLQIWDTAG 79
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE R + +SY R G + V D T E + ++ + + + N+ I+++ NK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 138 PNAIQIKQIE 147
+ +K+ E
Sbjct: 139 ESRRDVKREE 148
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 58.4 bits (142), Expect = 6e-11
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++LG DS GKT+ + + ++ TIG + V QI
Sbjct: 11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI-------- 61
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVP 127
WD GQE+ + L ++ R D + V D T + + E + D N P
Sbjct: 62 --WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 128 ILILANKQDLPN 139
++L NK DL N
Sbjct: 120 FVVLGNKIDLEN 131
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 58.0 bits (141), Expect = 6e-11
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEK---VKGQIGKCKGINFLIWDVG 76
+V+LG GKT+ ++ ++ PT+ K + + D
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLH-----LVDTA 80
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANK 134
GQ++ L S+ G + V T + + ++ + + VP++++ NK
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR--VPVVLVGNK 138
Query: 135 QDL 137
DL
Sbjct: 139 ADL 141
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 58.0 bits (141), Expect = 6e-11
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++G ++ GK+ L++ ++ ++ TIG + VK QI
Sbjct: 13 FLVIG-NAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI-------- 63
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
WD GQE+ R + +SY R G + V D T E + + + + N+ I++
Sbjct: 64 --WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALT-NWLTDARMLASQNIVIIL 120
Query: 131 LANKQDLPNAIQIKQIE 147
NK+DL ++ +E
Sbjct: 121 CGNKKDLDADREVTFLE 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 58.0 bits (141), Expect = 7e-11
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+ LG DS GKT+ LY+ ++ + T+G + G +G+ + I+
Sbjct: 14 FLALG-DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+WD G E+ R L ++ R G + + D T+ + V+ I ++ + + N I
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM--HAYSENPDI 130
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ NK DL + +K+ E+ L E + Y + T A G + I L LI+K+
Sbjct: 131 VLCGNKSDLEDQRAVKE-EEARELAEKYGIP--YFE-TSAANGTNISHAIEMLLDLIMKR 186
Query: 189 --RKLQKT 194
R + K+
Sbjct: 187 MERSVDKS 194
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 57.6 bits (140), Expect = 7e-11
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
+++G D GK+ L++ ++ + TIG F + ++ + I IWD G
Sbjct: 18 YIIIG-DMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII--EVSG-QKIKLQIWDTAG 73
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +SY R G + V D T + + +N N N I+++ NK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADL 132
Query: 138 PNAIQIKQIE 147
+ E
Sbjct: 133 EAQRDVTYEE 142
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 57.8 bits (140), Expect = 8e-11
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKC 65
ENL +V++G + GKT L D++ VPT+ N +V G
Sbjct: 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDG----- 70
Query: 66 KGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNND 122
K + +WD GQE +LRPL SY TD I+ + +E + + + +K+
Sbjct: 71 KQVELALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSVDSPDSLENIPEKWVPEVKHF- 126
Query: 123 NFNVPILILANKQDL--------------PNAIQIKQIEKLLGLYELNNMHLYYIQATCA 168
NVPI+++ANK+DL ++ + + Y++ A
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM--AVRIQAYD--YLE-CSA 181
Query: 169 ITGDGLHEGINELYQLILKKRKLQK 193
T +G+ E + L+KR +
Sbjct: 182 KTKEGVREVFETATRAALQKRYGSQ 206
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 57.5 bits (140), Expect = 8e-11
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
+++LG D GK++ + R +++ TIG + V QI
Sbjct: 10 VILLG-DGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI-------- 60
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVP 127
WD GQE+ R L + R +D + D + + + E I + + P
Sbjct: 61 --WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 128 ILILANKQDLPN 139
+IL NK D+
Sbjct: 119 FVILGNKIDISE 130
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 57.6 bits (140), Expect = 8e-11
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
I+++G +S GK++ L R D + TIG F KVK IWD G
Sbjct: 18 ILIIG-ESGVGKSSLLLRFTDDTFDPELAATIGVDF---KVKTISVDGNKAKLAIWDTAG 73
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R L SY R G+I V D T + ++ L + ++ +++ NK D
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKM 197
N +++++ GL + +I+ A T DG+ EL + I++ L ++
Sbjct: 134 EN----REVDRNEGLKFARKHSMLFIE-ASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188
Query: 198 NK 199
N
Sbjct: 189 NS 190
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 57.1 bits (139), Expect = 9e-11
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEK---VKGQIGKCKGINFLIWDVGG 77
+++LG GK+ + G ++ V G+ ++D+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLM-----VYDIWE 58
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQ 135
Q+ R L D + V TD E+ ++ + D+ VPI+++ NK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD--VPIILVGNKS 116
Query: 136 DL 137
DL
Sbjct: 117 DL 118
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 57.7 bits (140), Expect = 1e-10
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGINF 70
++ LG DS GKTT LYR +++ + T+G +N + G GK ++
Sbjct: 28 LLALG-DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPI 128
+WD GQE+ R L ++ R G + + D T + V+ + ++ N N I
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA--NAYCENPDI 144
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ NK DLP+ ++ + + L + + Y + T A TG + + + L LI+K+
Sbjct: 145 VLIGNKADLPDQREVNE-RQARELADKYGIP--YFE-TSAATGQNVEKAVETLLDLIMKR 200
Query: 189 --RKLQKTNKMNKVKK 202
+ ++KT + V
Sbjct: 201 MEQCVEKTQIPDTVNG 216
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 57.5 bits (139), Expect = 1e-10
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCE---KVKGQIGKCKGINFLIWD 74
SV +V++G GKT+ L + + PT+ +VKG K ++ IWD
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKG-----KPVHLHIWD 88
Query: 75 VGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
GQ+ +LRPL Y ++ D T + + + + VPI+++
Sbjct: 89 TAGQDDYDRLRPL--FYPD-ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVV 144
Query: 132 ANKQDL--------------PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
K DL + + +++ + + Y++ A D +H
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM--ARSVGAVA--YLE-CSARLHDNVHAV 199
Query: 178 INELYQLILKKRK 190
E ++ L R
Sbjct: 200 FQEAAEVALSSRG 212
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 56.4 bits (137), Expect = 2e-10
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--FNCEKVKGQIGKCKGINFLIWDVGG 77
++++G DS GK++ L R + + + + TIG F K++ + + IWD G
Sbjct: 12 LLIIG-DSGVGKSSLLLRFADNTFSGSYITTIGVDF---KIRTVEINGEKVKLQIWDTAG 67
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ R + +Y R T G+I V D T E VK + I N + +V +++ NK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCD-DVCRILVGNKNDD 125
Query: 138 PNAIQIKQIE 147
P ++ +
Sbjct: 126 PERKVVETED 135
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 57.1 bits (138), Expect = 2e-10
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQ 61
+S+ + +V++G + GKT L DQ+ VPT+ F +
Sbjct: 9 HHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIE 67
Query: 62 IGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTI 118
+ K + +WD GQE +LRPL SY TD I+ + +E + + +
Sbjct: 68 VDG-KQVELALWDTAGQEDYDRLRPL--SYPD-TDVILMCFSIDSPDSLENIPEKWTPEV 123
Query: 119 KNNDNFNVPILILANKQDL 137
K+ NVPI+++ NK+DL
Sbjct: 124 KHFCP-NVPIILVGNKKDL 141
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 56.0 bits (136), Expect = 3e-10
Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 21 HIVMLGLDSA-GKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKG--INFLIWDVG 76
++++G +S GK+T Q + E + + +++D+
Sbjct: 4 KVMLVG-ESGVGKSTLAGTFGGLQGDHAHEMENS---EDTYERRIMVDKEEVTLIVYDIW 59
Query: 77 GQEKLRPLWKS-YTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILAN 133
Q + + D + V TD +V + ++ + + + +P++++ N
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGN 117
Query: 134 KQDLPNAIQI 143
K DL + ++
Sbjct: 118 KSDLARSREV 127
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 55.3 bits (134), Expect = 5e-10
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 25/132 (18%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG---------FNCEKVKGQIGKCKGINF 70
++++G GK+T Q + P + E+V +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV-------- 76
Query: 71 LIWDVGGQEKLRPLWKS-YTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVP 127
+D+ Q + + D + V TD +V + ++ + + + +P
Sbjct: 77 --YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LP 132
Query: 128 ILILANKQDLPN 139
++++ NK DL
Sbjct: 133 VILVGNKSDLAR 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 55.1 bits (133), Expect = 6e-10
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGINFLIWDVGG 77
IV++G GKT L+ D + VPT+ N ++ + I +WD G
Sbjct: 10 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT-----QRIELSLWDTSG 64
Query: 78 QE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
+RPL SY +D ++ D + E ++ V + I+ N +L++ K
Sbjct: 65 SPYYDNVRPL--SYPD-SDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCK 120
Query: 135 QDL 137
DL
Sbjct: 121 SDL 123
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 55.5 bits (134), Expect = 7e-10
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 16/134 (11%)
Query: 11 NLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCK 66
++ + + IV++G GKT L+ D + VPT+ N ++ +
Sbjct: 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT-----Q 74
Query: 67 GINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDN 123
I +WD G +RPL SY +D ++ D + E ++ V + I+
Sbjct: 75 RIELSLWDTSGSPYYDNVRPL--SYPD-SDAVLICFDISRPETLDSVLKKWKGEIQEF-C 130
Query: 124 FNVPILILANKQDL 137
N +L++ K DL
Sbjct: 131 PNTKMLLVGCKSDL 144
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 54.6 bits (132), Expect = 9e-10
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 15 SGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT---VPTIGFNCEK---VKGQIGKCKGI 68
G + +V++G GK+T E+ V G+ I
Sbjct: 2 FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE--SATII 59
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNV 126
+W+ G+ L + D + V TD E+ ++ + ++ +
Sbjct: 60 LLDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED--I 115
Query: 127 PILILANKQDLPNAIQIKQIE 147
PI+++ NK DL ++ E
Sbjct: 116 PIILVGNKSDLVRXREVSVSE 136
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 54.8 bits (132), Expect = 9e-10
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 27/192 (14%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
++ V++G + GKT L + + F+ + K +N +WD GQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-KPVNLGLWDTAGQ 63
Query: 79 E---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
E +LRPL SY + TD + E V+ + ++++ N PI+++ K
Sbjct: 64 EDYDRLRPL--SYPQ-TDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKL 119
Query: 136 DLPN--------------AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
DL + I Q + E+ + Y++ A+T GL +E
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAM--AKEIGAVK--YLE-CSALTQRGLKTVFDEA 174
Query: 182 YQLILKKRKLQK 193
+ +L ++K
Sbjct: 175 IRAVLCPPPVKK 186
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 54.5 bits (132), Expect = 1e-09
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 22 IVMLGLDSA-GKTTALYRLKFDQY-LNTVPTIG--F-------NCEKVKGQIGKCKGINF 70
I+++G DS GKT YR ++ T TIG F + E++K Q+
Sbjct: 23 IIVIG-DSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL-------- 73
Query: 71 LIWDVGGQEKLRP-LWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
WD GQE+ R + + Y R ++FV D T++ + + + ++ ++P +
Sbjct: 74 --WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131
Query: 130 ILANKQDLPNAIQIKQIE 147
++ NK DL +AIQ+
Sbjct: 132 LVGNKCDLRSAIQVPTDL 149
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 54.6 bits (132), Expect = 1e-09
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 24/133 (18%)
Query: 22 IVMLGLDSA-GKTTALYRL--KFDQY-LNTVPTIG---------FNCEKVKGQIGKCKGI 68
+ ++G ++ GK+ + K ++ + T G V ++
Sbjct: 23 VAVVG-EATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL------ 75
Query: 69 NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNV 126
+ D G + + Y I V D + +E E K EL+K+ + + +
Sbjct: 76 --FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133
Query: 127 PILILANKQDLPN 139
+++ANK DLP
Sbjct: 134 RAVLVANKTDLPP 146
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 53.7 bits (130), Expect = 2e-09
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 15/127 (11%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNC----EKVKGQIGKCKGINFLIWDVG 76
+V+LG GKT+ Q + +G + V G+ + D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLV-----VVDTW 60
Query: 77 GQEKLRPLW--KSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILA 132
EKL W +S + + V D E ++ D+ VPI+++
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH--VPIILVG 118
Query: 133 NKQDLPN 139
NK DL
Sbjct: 119 NKADLAR 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 53.7 bits (129), Expect = 3e-09
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 2 GKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEK 57
G+ + F + +V++G GKT L L D Y T VPT+ N C +
Sbjct: 10 GRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE 69
Query: 58 VKGQIGKCKGINFLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIEL 114
+ + + +WD G +RPL Y+ +D ++ D + E ++ +
Sbjct: 70 TEE-----QRVELSLWDTSGSPYYDNVRPL--CYSD-SDAVLLCFDISRPETVDSALKKW 121
Query: 115 IKTIKNNDNFNVPILILANKQDL 137
I + + +L++ K DL
Sbjct: 122 RTEILDY-CPSTRVLLIGCKTDL 143
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 53.2 bits (128), Expect = 3e-09
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFN---CEKVKGQIGKCKGIN 69
+ V V++G + GKT+ + + Y +PT N V G + +
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDG-----RPVR 69
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+ D GQ+ KLRPL YT TD + + V + + I+ +
Sbjct: 70 LQLCDTAGQDEFDKLRPL--CYTN-TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KA 125
Query: 127 PILILANKQDLPNAIQI-----KQIEKLLGLYELNNM-----HLYYIQATCAITGDGLHE 176
PI+++ + DL +++ K EK + + YI+ A+T L E
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE-CSALTQKNLKE 184
Query: 177 GINELYQLILKKRKLQK 193
+ ++ Q+
Sbjct: 185 VFDAAIVAGIQYSDTQQ 201
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 51.0 bits (122), Expect = 2e-08
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 45/204 (22%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT-VPTIG---------------------------- 52
V+LG S GK++ + RL D + TIG
Sbjct: 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNIN 69
Query: 53 --------FNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDV 104
+ I F IWD GQE+ + Y R I V D ++
Sbjct: 70 SINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS 129
Query: 105 ERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQ 164
++ K + +K + N I+++ANK D Q++ L + +L +IQ
Sbjct: 130 NTLDRAK-TWVNQLKISS--NYIIILVANKIDKNK----FQVDILEVQKYAQDNNLLFIQ 182
Query: 165 ATCAITGDGLHEGINELYQLILKK 188
T A TG + L + I K
Sbjct: 183 -TSAKTGTNIKNIFYMLAEEIYKN 205
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 21 HIVMLGLDSA-GKTTALYRLKFDQYLNTV---PTIGFNCEK---VKGQIGKCKGINFLIW 73
+V++G + GK+T E+ V G+ I +W
Sbjct: 39 RVVLIG-EQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE--SATIILLDMW 95
Query: 74 DVGGQEK-LRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILI 130
+ G+ + L + D + V TD E+ ++ + ++ +PI++
Sbjct: 96 ENKGENEWLHD---HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED--IPIIL 150
Query: 131 LANKQDLPN 139
+ NK DL
Sbjct: 151 VGNKSDLVR 159
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 51.0 bits (122), Expect = 3e-08
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 13 QASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-VPTIGFNCEKVKGQIGKCKGINFL 71
G+ + V++G + GKT L D + VPT+ F+ V +G K
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG-KQYLLG 69
Query: 72 IWDVGGQE---KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPI 128
++D GQE +LRPL SY TD + + + VK E + +K NVP
Sbjct: 70 LYDTAGQEDYDRLRPL--SYPM-TDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPF 125
Query: 129 LILANKQDL 137
L++ + DL
Sbjct: 126 LLIGTQIDL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-06
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 44/187 (23%)
Query: 9 FEN--LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQ-YLNTVPTIGFNCEKVKG----- 60
FEN L+ + +H + L TT + + + Y+ +K
Sbjct: 91 FENCYLE---GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 61 --QIGKCKGINFLIWDVGGQ-------EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK 111
G + + I+ GGQ E+LR L+++Y +I + E
Sbjct: 148 AVGEGNAQ-L-VAIF--GGQGNTDDYFEELRDLYQTYHVLVGDLI--------KFSAETL 195
Query: 112 IELIKTIKNNDNF---NVPILI-LANKQDLPNAIQIKQIE---KLLGLYELNNMHLYYIQ 164
ELI+T + + + IL L N + P+ + I L+G+ +L + Y +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVV- 251
Query: 165 ATCAITG 171
T + G
Sbjct: 252 -TAKLLG 257
Score = 40.4 bits (94), Expect = 2e-04
Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 50/182 (27%)
Query: 5 SAAFFENLQASGSSSVHIVMLGLDSAGKTTALY----RLKFDQYLNTVPTIGFNCEKVKG 60
A FE+L++ G G S G+ AL + + + V +G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVEVV--------FYRG 1790
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERM-EEVKIELIKTIK 119
+ V E R +Y G+I + +E +++ +
Sbjct: 1791 M--------TMQVAVPRDELGR---SNY-----GMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 120 NND-------NFNVP---ILILANKQDL------PNAIQIKQIE--KLLGLYELNNM--H 159
N+NV + + + L N I++++I+ +L L + H
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Query: 160 LY 161
L+
Sbjct: 1895 LF 1896
Score = 33.9 bits (77), Expect = 0.037
Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 98/269 (36%)
Query: 4 NSAAFFENLQASGSSSVHIVMLGLDSAGKT-----------TALYRLKFD---------- 42
N+ +FE L+ + +V + + +T ++ +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 43 ----QYLNTVPTIGFNCEKVKGQIGKCKGINFLI------WDVGGQEKLRPLWKSYTRCT 92
YL ++P I IG + ++++ + G +LR K T +
Sbjct: 225 TPDKDYLLSIP-ISCP------LIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHS 274
Query: 93 DGII---FVIDSTDVERMEEVKIELIKTIKNNDNF-------------NVPILILA---- 132
G++ + ++ E + I + F ++P IL
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 133 NKQDLPN---AIQ---IKQIEKLLGLYELNNMHL-----YYIQATCAITGDGLHEGIN-- 179
N + +P+ +I +Q++ + N HL I L G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYV---NKTNSHLPAGKQVEI---------SLVNGAKNL 377
Query: 180 -------ELYQLILKKRKLQKTNKMNKVK 201
LY L L RK + + +++ +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 43.7 bits (104), Expect = 7e-06
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D ++F++D T + ++ +I +PI ++ NK D+ + LG+
Sbjct: 85 DRVLFMVDGTTTDAVDPAEI--WPEFIARLPAKLPITVVRNKADITG--------ETLGM 134
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
E+N L + A TG EG++ L + +
Sbjct: 135 SEVNGHALIRL---SARTG----EGVDVLRNHLKQS 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 44.0 bits (105), Expect = 1e-05
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D ++ ID+ + +I E +K + P++++ NK DL I +E
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYEQVK--------HRPLILVMNKIDLVEKQLITSLEYPEN 356
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + I T A +GI+ L IL+
Sbjct: 357 ITQ--------IVHTAAAQK----QGIDSLETAILEI 381
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 43.7 bits (104), Expect = 1e-05
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 93 DGIIFVIDSTDVERMEEVKI-ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D ++FV+D++ E+ KI E IK N L++ NK D+ I ++I+ LG
Sbjct: 325 DIVLFVLDASSPLDEEDRKILERIK--------NKRYLVVINKVDVVEKINEEEIKNKLG 376
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ H+ I A+ G EG+ +L + I ++
Sbjct: 377 ----TDRHMVKI---SALKG----EGLEKLEESIYRE 402
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 43.6 bits (102), Expect = 2e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
+ K + F + DVGGQ R W I+F++ S++ R+ E +
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE-SLN 255
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
+ +TI NN F NV I++ NK DL
Sbjct: 256 IFETIVNNRVFSNVSIILFLNKTDL 280
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 43.6 bits (102), Expect = 2e-05
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIE 113
+ +NF ++DVGGQ R W IIFV+ S+ R++E +
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LN 271
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L K+I NN + +++ NKQDL
Sbjct: 272 LFKSIWNNRWLRTISVILFLNKQDL 296
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 43.3 bits (102), Expect = 2e-05
Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 92 TDGIIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150
+ II++ D ++ E +I L + + + ++P L++ NK D+ + IK++EK +
Sbjct: 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLPFLVVINKIDVADEENIKRLEKFV 305
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKVKK 202
LN + A+ G G+ E+ + + + K+ + +
Sbjct: 306 KEKGLNPI------KISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELR 351
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 41.2 bits (96), Expect = 1e-04
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 61 QIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEV 110
K G + ++DVGGQ R W +IF ++ RM E
Sbjct: 176 GENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET 235
Query: 111 KIELIKTIKNNDNF-NVPILILANKQDL 137
EL + F ++ NK D+
Sbjct: 236 -KELFDWVLKQPCFEKTSFMLFLNKFDI 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 41.0 bits (97), Expect = 1e-04
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 125 NVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
+ +++ NK DL + ++++ +L +Y LY I T A TG G+ E
Sbjct: 115 ELETVMVINKMDLYDEDDLRKVRELEEIYS----GLYPIVKTSAKTGMGIEE 162
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 40.8 bits (95), Expect = 1e-04
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
K ++F ++DVGGQ R W IIF + +D + RM E ++
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MK 247
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L +I NN F + I++ NK+DL
Sbjct: 248 LFDSICNNKWFTDTSIILFLNKKDL 272
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 40.1 bits (94), Expect = 2e-04
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 95 IIFVIDSTDVERME-EVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQ-IEKLLGL 152
I+F+ID ++ + + +I L +IK+ N I+I NK D N + + L+
Sbjct: 112 ILFIIDISEQCGLTIKEQINLFYSIKS-VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200
N + + +TG G+ + +L+ + ++
Sbjct: 171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQL 218
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 40.2 bits (95), Expect = 2e-04
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 18/98 (18%)
Query: 93 DGIIFVIDSTDVERMEEVKI--ELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLL 150
D I++++D +E+ EL L +ANK D
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPA-----AKFLTVANKLDRAANADALIRAIA- 367
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ + I A+ G +GI+ L Q +
Sbjct: 368 ---DGTGTEVIGI---SALNG----DGIDTLKQHMGDL 395
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 39.3 bits (91), Expect = 4e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 64 KCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD----------VERMEEVKIE 113
+ + F + DVGGQ R W I+F++ ++ RMEE
Sbjct: 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KA 221
Query: 114 LIKTIKNNDNF-NVPILILANKQDL 137
L +TI F N +++ NK+DL
Sbjct: 222 LFRTIITYPWFQNSSVILFLNKKDL 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 7e-04
Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 75/240 (31%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTT-ALYRLKFDQYLNTVP------TIGFNCEKVKGQI 62
L+ + + + G+ +GKT AL + + + NC + +
Sbjct: 145 LELRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199
Query: 63 GKCKGINFLI---WDVGG-------------QEKLRPLW--KSYTRCTDGIIFVIDSTDV 104
+ + + I W Q +LR L K Y C + V+ +V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVLL--NV 253
Query: 105 ERMEEVKIELIKTIKNNDNFNV--PILILANKQDLPNAI------QIKQIEKLLGLYELN 156
+ + + FN+ IL+ + + + + I + L
Sbjct: 254 QNAKAW-----------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 157 NMHLY--YI---------QA------TCAITGDGLHEGIN--ELYQLILKKRKLQKTNKM 197
L Y+ + +I + + +G+ + ++ + KL +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIES 361
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 92 TDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D I V DS ++V + L K ++ +P +++ NK D+ ++ E+L G
Sbjct: 114 ADCGILVTDSAPTPYEDDV-VNLFKEME------IPFVVVVNKIDVLG----EKAEELKG 162
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
LYE + A+ +G +++ + I +
Sbjct: 163 LYESRYEA--KVLLVSALQK----KGFDDIGKTISEI 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 37.3 bits (86), Expect = 0.001
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 92 TDGIIFVIDSTDVERM--EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKL 149
DG + ID + ++ + PI+++ K D I+
Sbjct: 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF 222
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 37.7 bits (87), Expect = 0.002
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 31/186 (16%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGIN 69
EN+ + + V++G + GKT L + + F+ + K +N
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-KPVN 204
Query: 70 FLIWDVGGQE---KLRPLWKSYTRCTDGII--FVIDSTDVERMEEVKIELIKTIKNNDNF 124
+WD G E +LRPL SY + TD + F + S V+ + ++++
Sbjct: 205 LGLWDTAGLEDYDRLRPL--SYPQ-TDVFLICFSLVSPA--SFHHVRAKWYPEVRHHCP- 258
Query: 125 NVPILILANKQDL--------------PNAIQIKQIEKLLGLYELNNMHLYYIQATCAIT 170
N PI+++ K DL I Q + E+ + Y++ A+T
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM--AKEIGAVK--YLE-CSALT 313
Query: 171 GDGLHE 176
GL
Sbjct: 314 QRGLKT 319
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166
KQ +K+++ L LY ++ I+AT
Sbjct: 19 KQ------ALKKLQASLKLYADDSAPALAIKAT 45
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.1 bits (84), Expect = 0.004
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
V LI+ NK DL + + + + + +Y N+ Y + + T DGL
Sbjct: 158 TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR--NIG-YRVLMVSSHTQDGLKP 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.6 bits (83), Expect = 0.006
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 123 NFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHL-YYIQATCAITGDGLHE 176
F V +I+ NK DL N + K++E+ + +Y Y + A TG+G+ E
Sbjct: 108 YFKVEPVIVFNKIDLLNEEEKKELERWISIYR----DAGYDVLKVSAKTGEGIDE 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 34.7 bits (81), Expect = 0.013
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
+ +IFV++ T +E+ + ++ K P+++ NK D +++ LL
Sbjct: 90 ELVIFVVEGTRWTPDDEMVLNKLREGK------APVILAVNKVDN-----VQEKADLLPH 138
Query: 153 YE-LNNMHLYY-IQATCAITGDGLHEGINELYQLILK 187
+ L + + I A TG ++ + ++ K
Sbjct: 139 LQFLASQMNFLDIVPISAETGL----NVDTIAAIVRK 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 34.2 bits (78), Expect = 0.015
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++ G GKTT + ++ + L IGF E+V+ K K F I G++
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV--ERLG-KRAIGFWTEEVRDPETK-KRTGFRIITTEGKK 56
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
K+ ++ G V +V+ EE+ I +++ + +I+
Sbjct: 57 KIFSSKFFTSKKLVGSYGV----NVQYFEELAIPILERAYREAKKDRRKVII 104
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 33.8 bits (78), Expect = 0.016
Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 37/150 (24%)
Query: 68 INFLIW------DVGG-----------QEKLRPLWKSYTRCT----DGIIFVIDSTDVER 106
I + W D+ G QE+++ + D + V+D
Sbjct: 38 IIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPE 97
Query: 107 MEEVK---------IELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNN 157
+ + +E + ++ ++P ++ NK D +Q +
Sbjct: 98 IIKRWEKRGEIPIDVEFYQFLREL---DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS 154
Query: 158 MHLYYIQATCAITGDGLHEGINELYQLILK 187
A G + I L I +
Sbjct: 155 EIDKVFIPISAKFG----DNIERLKNRIFE 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.5 bits (80), Expect = 0.016
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 93 DGIIFVIDSTDVERMEEVKIELI-KTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
D +I VIDST E + ++ + ++ PIL+ NK D N K+++ +
Sbjct: 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEK 318
Query: 152 LYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
L + ++ + A+ + L I
Sbjct: 319 LSKELYSPIFDVIPISALKR----TNLELLRDKI 348
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 33.3 bits (77), Expect = 0.045
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 95 IIFVID-STD-VERMEEVKIELIKTIKNNDNFNV-----PILILANKQDLPNAIQIKQIE 147
+++V+D + + ++ +E ++ E+ ++ P L+ NK DL +K +
Sbjct: 239 LLYVLDAADEPLKTLETLRKEVGA-------YDPALLRRPSLVALNKVDLLEEEAVKALA 291
Query: 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
L + + + A+TG GL L+ L+
Sbjct: 292 DAL---AREGLAVLPV---SALTGAGLPALKEALHALVRSTPP 328
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 0.11
Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTT---ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCK 66
+ L+ SS +++ + G +GK++ L + ++ + +
Sbjct: 60 DALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV-EVTMERHPYKHPN 118
Query: 67 GINFLIWDVGG-----QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNN 121
N + WD+ G L K D I + R ++ I++ K I
Sbjct: 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA----TRFKKNDIDIAKAIS-- 172
Query: 122 DNFNVPILILANKQDLPNAIQIKQIEK 148
+ K D + +
Sbjct: 173 -MMKKEFYFVRTKVDSDITNEADGEPQ 198
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 31.1 bits (71), Expect = 0.17
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D +I V DS + E+ + +E+++ +++ D I +++K
Sbjct: 85 DLVILVADSVNPEQSLYLLLEILE-------MEKKVILAMTAIDEAKKTGMKIDRYELQK 137
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
LG+ + T ++TG+GL E ++ + K L +
Sbjct: 138 HLGI---------PVVFTSSVTGEGLEELKEKIVEYAQKNTILHR 173
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.8 bits (69), Expect = 0.19
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ H+ + G GKTT +++ + VP GF E+V+ G+ G F + + G
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG-GRRIG--FDVVTLSGT 57
Query: 79 EKLRPLWKSYTRCTDGIIFVID---STDVERMEEVKIELIKTIKNNDNFNVPILIL--AN 133
PL + G D+ E++ + +++ + + ++
Sbjct: 58 RG--PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIG 115
Query: 134 KQDLPNAIQIKQIEKLL 150
K +L + + I+ + + L
Sbjct: 116 KMELFSQLFIQAVRQTL 132
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 31.0 bits (71), Expect = 0.19
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 125 NVPILILANKQDLPNAIQIKQ-IEKLLGLYELNNMHLYYIQATCAITGDGLHE 176
++ +I K DL + I+ Y N+ Y + T + D L +
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYR--NIG-YDVYLTSSKDQDSLAD 166
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 31.1 bits (71), Expect = 0.20
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILA-NKQDLPNA----IQIKQIE 147
D I+ ++DST + R + +EL + V +IL NK DL I IK++
Sbjct: 83 DVIVDIVDSTCLMRNLFLTLELFE-------MEVKNIILVLNKFDLLKKKGAKIDIKKMR 135
Query: 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
K LG+ + T A G+G+ E + + K
Sbjct: 136 KELGV---------PVIPTNAKKGEGVEELKRMIALMAEGKVTTNP 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 30.6 bits (70), Expect = 0.31
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 95 IIFVIDSTDVERMEEVKIELIKTIKNN-DNFNV-----PILILANKQDLPNAIQ-IKQIE 147
I+ VID + +E + TI +N+ P +I+ANK D+P A + ++ +
Sbjct: 240 IVHVIDMSGLE--GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFK 297
Query: 148 KLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ L ++ ++ I A+T +GL E + E+ + +
Sbjct: 298 EKLT----DDYPVFPI---SAVTREGLRELLFEVANQLENTPE 333
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 30.3 bits (69), Expect = 0.45
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 103 DVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKL 149
+ + E+ + K P++I ANK D + QIK++ +
Sbjct: 199 SQDDLLAFASEIRRVNK-------PMVIAANKADAASDEQIKRLVRE 238
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 30.0 bits (68), Expect = 0.46
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D I+ V+D+T++ER + +LI+ +P+ I N D+ + I + ++
Sbjct: 82 DSILNVVDATNLERNLYLTTQLIE-------TGIPVTIALNMIDVLDGQGKKINVDKLSY 134
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
LG+ + AT A+ G+ + + +
Sbjct: 135 HLGV---------PVVATSALKQTGVDQVVKKAAHTTTSTVG 167
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 29.6 bits (67), Expect = 0.51
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 122 DNFNVPILILANKQD-LPNAIQIKQI----EKLLGLYELNNMHLYYIQATCAITGDGLHE 176
PI L K D L I + + L + +Q A+ GL +
Sbjct: 141 APTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD 200
Query: 177 GINELYQLI 185
+ +
Sbjct: 201 AHALIESWL 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.9 bits (67), Expect = 0.58
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL-PNAIQIKQIEKLL- 150
++ ++D D + + + NN +L++ NK DL P +++ +++ +
Sbjct: 71 ALVVKIVDIFDFNGSWLPGLH--RFVGNN-----KVLLVGNKADLIPKSVKHDKVKHWMR 123
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ + + A G +GI EL I R
Sbjct: 124 YSAKQLGLKPEDVFLISAAKG----QGIAELADAIEYYRG 159
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.7 bits (68), Expect = 0.59
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 93 DGIIFVIDSTD-VERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLG 151
+ +++V+D +E+ +K + VPIL++ NK D K E+ +
Sbjct: 88 NAVVWVVDLRHPPTPEDELVARALKPLVGK----VPILLVGNKLDA-----AKYPEEAMK 138
Query: 152 LYE--LNNMHLYYIQATCAITGDGLHEGINELYQL 184
Y L + A+ + E +L L
Sbjct: 139 AYHELLPEAEPRML---SALDERQVAELKADLLAL 170
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.8 bits (67), Expect = 0.64
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 19/77 (24%)
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY----------IQATCAITGDGLHEGI 178
LI+ NK D N + + + A+ GI
Sbjct: 198 LIVINKDDGDNHTNVAIARH-----MYESALHILRRKYDEWQPRVLTCSALEK----RGI 248
Query: 179 NELYQLILKKRKLQKTN 195
+E++ I+ + +
Sbjct: 249 DEIWHAIIDFKTALTAS 265
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 29.1 bits (66), Expect = 0.64
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D ++ ++D+T +ER + ++L++ +L+ NK DL + I + ++EK
Sbjct: 87 DLVVNIVDATALERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIEIDVDKLEK 139
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMN 198
+LG+ + A GI EL + I K +KT ++
Sbjct: 140 ILGV---------KVVPLSAAKK----MGIEELKKAISIAVKDKKTAEIK 176
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.3 bits (65), Expect = 0.78
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 20/146 (13%)
Query: 10 ENLQASGSSSVHIVMLGLDSAGKTTA----LYRLKFDQYLNTVPTIGFNCEKVKGQIGKC 65
ENL G S+ ++++G AGK+ L + +F L C +
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVT-RACTTGSRRWD-- 68
Query: 66 KGINFLIWDVGG---------QEKLRPLWKSYTRCTDG---IIFVIDSTDVERMEEVKIE 113
+ + D Y G ++ V ++ +
Sbjct: 69 -KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVR 127
Query: 114 LIKTIKNNDNFNVPILILANKQDLPN 139
++ + D +++ K+DL
Sbjct: 128 QVRDMFGEDVLKWMVIVFTRKEDLAG 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.1 bits (65), Expect = 0.93
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL-PNAIQIKQIEK-LL 150
++ ++D D + + +N PIL++ NK DL P +++ ++ + +
Sbjct: 73 ALVVNIVDIFDFNGSFIPGLP--RFAADN-----PILLVGNKADLLPRSVKYPKLLRWMR 125
Query: 151 GLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
+ E + + A G G+ ++ + I + R+
Sbjct: 126 RMAEELGLCPVDVCLVSAAKG----IGMAKVMEAINRYREGGDV 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.8 bits (64), Expect = 1.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
E+ L + + + + T + + +++K +K N F
Sbjct: 130 ERCLELVEEFESKGIDERYFYN-TSHLQPTNLN-DIVKNLKTNPRFIF 175
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 28.4 bits (64), Expect = 1.3
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 36/112 (32%)
Query: 93 DGIIFVIDSTDVER--------MEEVKIELIKTIKNNDNFNVPILILANKQDLPNA---- 140
D II VID+ +ER E P+++ N D+
Sbjct: 85 DCIINVIDACHLERHLYLTSQLFE---------------LGKPVVVALNMMDIAEHRGIS 129
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
I +++E LLG + A G+ L K + L+
Sbjct: 130 IDTEKLESLLGC---------SVIPIQAHKNIGIPALQQSLLHCSQKIKPLK 172
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 27.9 bits (63), Expect = 1.5
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 122 DNFNVPILILANKQD-LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINE 180
+ N+P I+ K D + + + K++E+ + Y I T ++TG+G+ E ++
Sbjct: 130 KSLNIPFTIVLTKMDKVKMSERAKKLEEHRK--VFSKYGEYTIIPTSSVTGEGISELLDL 187
Query: 181 LYQLI 185
+ L+
Sbjct: 188 ISTLL 192
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 28.2 bits (64), Expect = 1.6
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D I+F+ID+T+ R + +I IK N P++++ NK D I + +L L
Sbjct: 94 DVILFMIDATEGWRPRDEEI-YQNFIKPL---NKPVIVVINKIDK-----IGPAKNVLPL 144
Query: 153 YE-LNNMHLYY--IQATCAITGDGLHEGINELYQLILK 187
+ ++ H I A+ G ++EL + ILK
Sbjct: 145 IDEIHKKHPELTEIVPISALKGA----NLDELVKTILK 178
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: b.40.4.10
c.116.1.2
Length = 268
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 2 GKNSAAFFENLQASGSSSVHI-VMLGLDSAGKTTALYRLKFDQYLNTVPTIG 52
+ + ++ + ++ G G L + D ++NT+P
Sbjct: 193 ASPITSILDEVKTRMRGAREAAILFGGPYKG----LPEIDADIWVNTLPGQC 240
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 122 DNFNVPILILANKQD-LPN---AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
+ +P++++A K D +P K + + L + + + + T G E
Sbjct: 131 KYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE-----LILFSSETKKGKDEA 185
Query: 178 INELYQLI 185
+ ++I
Sbjct: 186 WGAIKKMI 193
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 28.1 bits (63), Expect = 1.9
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D +I V+D++++ER + ++L++ +P ++ N D+ I+I +
Sbjct: 87 DLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSA 139
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMN 198
LG + + G GI L I + + + ++
Sbjct: 140 RLGC---------PVIPLVSTRG----RGIEALKLAIDRYKANENVELVH 176
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 28.3 bits (63), Expect = 2.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 121 NDNFNVPILILAN 133
N+ +P++ILAN
Sbjct: 465 NNGEQLPMMILAN 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 27.5 bits (61), Expect = 2.7
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 129 LILANKQDLPNAIQIKQIEKLLGLYELNNM-HLYY---------IQATCAITGDGLHEGI 178
+++ NK D + + + + EL+ L Y + A+ G G+
Sbjct: 221 IVVVNKADGEHHKEARLAAR-----ELSAAIRLIYPREALWRPPVLTMSAVEG----RGL 271
Query: 179 NELYQLILKKRKLQKTN 195
EL+ + + R++
Sbjct: 272 AELWDTVERHRQVLTGA 288
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 27.8 bits (61), Expect = 3.0
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D ++F + + V+ +LI + NVP+ +L +++ A+ +E +
Sbjct: 55 DCLMFSYQMEHPDEHQNVR-QLIGKLHER-QQNVPVFLLGDREKALAAMDRDLLELVDEF 112
Query: 153 YELNN 157
+
Sbjct: 113 AWILE 117
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 27.1 bits (61), Expect = 3.2
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA----IQIKQIEK 148
D ++ ++D+T +ER + ++L++ +L+ NK DL + I + ++EK
Sbjct: 83 DLVVNIVDATALERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIEIDVDKLEK 135
Query: 149 LLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+LG+ + A GI EL + I K
Sbjct: 136 ILGV---------KVVPLSAAKK----MGIEELKKAISIAVK 164
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter
pylori} PDB: 3k1i_A
Length = 131
Score = 26.5 bits (58), Expect = 3.5
Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 1 MGKNSAAFFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG 60
N+ +++ + S S ++ + + + ++ + + + EK
Sbjct: 7 QYANAYQAYQHNRVSVESPAKLIEMLYEGILRFSSQAKRCIEN---------EDIEKKIY 57
Query: 61 QIGKCKGI-----NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELI 115
I + I N L ++ GG E L YT + D +++ V + +
Sbjct: 58 YINRVTDIFTELLNILDYEKGG-EVAVYLTGLYTHQIKVLTQANVENDASKIDLV-LNVA 115
Query: 116 KTIKN 120
+ +
Sbjct: 116 RGLLE 120
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 27.5 bits (61), Expect = 3.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 133 NKQDLPNAIQIKQIEKLLGLYELNNM 158
+ L + + Q + LLGL+ NM
Sbjct: 239 DAASLNSVTEANQQKPLLGLFADGNM 264
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 26.8 bits (60), Expect = 4.1
Identities = 9/68 (13%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 122 DNFNVPILILANKQD-LPN---AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEG 177
+ N+ +L+L K D L + Q+ + + + + + ++ ++ G+ +
Sbjct: 134 VDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD----VQVETFSSLKKQGVDKL 189
Query: 178 INELYQLI 185
+L
Sbjct: 190 RQKLDTWF 197
>2gkg_A Response regulator homolog; social motility, receiver domain,
signalling, high resolutio signaling protein; 1.00A
{Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Length = 127
Score = 25.9 bits (58), Expect = 6.3
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 112 IELIKTIKNNDNF-NVPILILANKQDLPNAIQIKQIEKLLGL 152
+ +K +D+ NVPI+I+ N + L
Sbjct: 66 YLICGKLKKDDDLKNVPIVIIGNPDG---------FAQHRKL 98
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 26.4 bits (59), Expect = 6.7
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 94 GIIFV--IDSTDVERMEEVKIELIKTIKNNDNFNVPILIL-ANKQDLPNAIQIKQIEKLL 150
GII + DST + ++E+K +L + + L NK + +++ +
Sbjct: 115 GIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARI 174
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.2 bits (57), Expect = 7.4
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 19/161 (11%)
Query: 3 KNSAAFFENLQASGSSSVHIVMLGLDSAGKTTA----LYRLKFDQYLNTVPTIGFNCEKV 58
+ Q + S + I+++G GK+ A L + F+ L + + C K
Sbjct: 6 HSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT-LTKTCSKS 64
Query: 59 KGQIGKCKGINFLIWDVGG--------QEKLRPLWKSYTRCTDG---IIFVIDSTDVERM 107
+G G +I D + + + + Y G ++ V
Sbjct: 65 QGSWG---NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ 121
Query: 108 EEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEK 148
++ + +K I D I++ +K+DL + +
Sbjct: 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHD 162
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 26.3 bits (58), Expect = 7.7
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 129 LILANKQDLPNAIQI-----KQIEKLLGLYELNNMHLYY-IQATCAITGDGLHEGINELY 182
+I NK D + + + L + + + + G +G++ L+
Sbjct: 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG----KGLDSLW 252
Query: 183 QLILKKRKLQKTN 195
I R
Sbjct: 253 SRIEDHRSKLTAT 265
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 25.9 bits (57), Expect = 9.4
Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 44/216 (20%)
Query: 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNT-----------VPTIGFNCE 56
FF L+ +S+ +++LG GK++ +N+ G
Sbjct: 25 FFGKLKQKDMNSMTVLVLGKGGVGKSST---------VNSLIGEQVVRVSPFQAEGLRPV 75
Query: 57 KVKGQIGKCKGINFLIWDVGG--------QEKLRPLWKSYTRCTDGIIFVIDSTDVERME 108
V +G G I D G + L + T ++ +D DV ++
Sbjct: 76 MVSRTMG---GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD 132
Query: 109 EVKIELIKTIKNNDNFNV--PILILANKQDL--PNAIQIKQIEKLLGLYELNNMHLYYIQ 164
E+ +++ I + L++ P+ + + + ++ L I+
Sbjct: 133 ELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSS-----KRSDSLLKTIR 187
Query: 165 ATCAITGDGLHEGINELYQLILKKRKLQ-KTNKMNK 199
A E + ++ + + N ++
Sbjct: 188 AGS---KMRKQEFEDSAIAVVYAENSGRCSKNDKDE 220
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 26.1 bits (58), Expect = 9.5
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 12 LQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLN 46
L+ V I++ G++ AGK + L ++++
Sbjct: 36 LKQQARFPVIILINGIEGAGKGETVKLLN--EWMD 68
>3ib5_A Sex pheromone precursor; YP_536235.1, structural genomics, joint
center for structural genomics, JCSG; 1.35A
{Lactobacillus salivarius UCC118}
Length = 348
Score = 26.0 bits (57), Expect = 9.7
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 88 YTRCTDGIIFVIDSTDVERMEEVKI---ELIKTIKNNDNFNVPILILANKQDLPNAI 141
Y + G + + +R+EE KI +++ ++ NVPI+I Q +++
Sbjct: 147 YQKEQYGATYSTTISKEKRIEEGKIAAKKVLARVRQKVGNNVPIVIAMFAQAPNDSL 203
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 26.1 bits (57), Expect = 9.8
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 68 INFLIWDVGGQEKLRPLWKSYTR-CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
+L+ + G +K++P K D I F+I + E + KI + K ++
Sbjct: 493 KEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISL 552
Query: 127 PILILANKQDLPNAIQIKQIEKLLGLYEL 155
++ + +I+K + E+
Sbjct: 553 MNMVAFDPH--------GKIKKYNSVNEI 573
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.398
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,965,521
Number of extensions: 171347
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 189
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)