RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1315
(202 letters)
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 101 bits (251), Expect = 8e-28
Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 6/170 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
G+ + I+MLGLD+AGKTT LY+LK Q + T+PT+GFN E K + F +WDV
Sbjct: 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE-----TVTYKNVKFNVWDV 63
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQ+K+RPLW+ Y T G+IFV+D D +R++E + EL + I + + + ILI ANKQ
Sbjct: 64 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
DLP+A++ +I++ LGL + + + Y +CA +GDGL+EG+ L
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQ-PSCATSGDGLYEGLTWLTSNY 172
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 96.6 bits (239), Expect = 5e-26
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 6/178 (3%)
Query: 8 FFENLQASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKG 67
L+++ V I++LGLD+AGKTT L +L + + PT GFN + V+ +G
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ-----SQG 59
Query: 68 INFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVP 127
+WD+GGQ K+RP W+SY TD +I+VIDS D +R EE EL + ++ VP
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
Query: 128 ILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+LI ANKQDL A +I + L L+ + + + A+TG+G+ +G+N + + +
Sbjct: 120 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ-SCSALTGEGVQDGMNWVCKNV 176
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 95.8 bits (237), Expect = 1e-25
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++LGLD AGKTT LYRL+ + + T PTIGFN E + K + +WD+GGQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL-----SYKNLKLNVWDLGGQT 72
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y T +IFV+DSTD +RM EL ++ + + +L+ ANKQD P
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ ++ K L L EL + + A+ AI G+G+ EG++ L +I +++
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIV-ASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 95.1 bits (235), Expect = 1e-25
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 6/169 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ ++MLGLD+AGKTT L + + PT+GFN + + + +G IWDVGGQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL-----EHRGFKLNIWDVGGQK 57
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
LR W++Y TDG+I+V+DS D +RM++ + EL + +LI ANKQDLP
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
A+ I++ L L + + H A+TG+ L GI+ L I +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQ-GCSAVTGEDLLPGIDWLLDDISSR 165
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 91.0 bits (225), Expect = 6e-24
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+++G GK+ L R D++ + + TIG + K+K K + IWD GQE+
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF-KIKTVDINGKKVKLQIWDTAGQER 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GII V D TD + + KT+ + N +L++ NK D+
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ G + + +I+ + A D ++E L +LI +K
Sbjct: 123 VVTADQ----GEALAKELGIPFIE-SSAKNDDNVNEIFFTLAKLIQEK 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 89.7 bits (221), Expect = 1e-23
Identities = 78/161 (48%), Positives = 113/161 (70%), Gaps = 6/161 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I+M+GLD+AGKTT LY+LK + + T+PTIGFN E V+ K I+F +WDVGGQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE-----YKNISFTVWDVGGQDK 56
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+RPLW+ Y + T G+IFV+DS D ER+ E + EL++ + ++ + +L+ ANKQDLPNA
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ +I LGL+ L + + Y ATCA +GDGL+EG++ L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQ-ATCATSGDGLYEGLDWL 156
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 89.5 bits (221), Expect = 3e-23
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G GK++ L R D + + KVK IWD GQE+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L SY R G+I V D T + ++ L + ++ +++ NK D N
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-- 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKT 194
+++++ GL + +I+ A T DG+ EL + I++ L ++
Sbjct: 128 --REVDRNEGLKFARKHSMLFIE-ASAKTCDGVQCAFEELVEKIIQTPGLWES 177
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 89.0 bits (219), Expect = 3e-23
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ LGLD+AGKTT L+ LK D+ PT E++ I F +D+GG +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAI-----GNIKFTTFDLGGHIQA 57
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R LWK Y +GI+F++D+ D ER +E ++EL + +VP +IL NK D PNA+
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 142 QIKQIEKLLGLYELN------NMHLYYIQATCAITGDGLHEGINELYQ 183
++ LGL + + +G E L Q
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 89.5 bits (221), Expect = 4e-23
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 7/182 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GK+ L R D Y + + TIG + + ++ K + IWD GQE+
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + SY R + GII V D TD E VK ++ I V L++ NK DL +
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNKMNKV 200
++ E + + T A+ + + + + I + Q N+ +
Sbjct: 127 RVVEYDVA----KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182
Query: 201 KK 202
K+
Sbjct: 183 KE 184
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 88.5 bits (218), Expect = 8e-23
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 16 GSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDV 75
++++GLD+AGKTT LY+ ++ ++T PTIG N E++ FL+WD+
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI-----VINNTRFLMWDI 66
Query: 76 GGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQ 135
GGQE LR W +Y T+ +I V+DSTD ER+ + EL K + + D +LI ANKQ
Sbjct: 67 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 126
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D+ + + +I + L L + + + CA+TG+GL +G+ + +
Sbjct: 127 DVKECMTVAEISQFLKLTSIKDHQWHIQA-CCALTGEGLCQGLEWMMSRL 175
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 87.5 bits (216), Expect = 1e-22
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
++++G GKT L+R D + + TIG + + ++ K I IWD GQE+
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG-KRIKLQIWDTAGQER 67
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + +Y R GI+ V D T+ + + ++ + + I+ + + +V +IL NK D+ +
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVNDK 126
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
Q+ + G + + +++ T A + L + I K
Sbjct: 127 RQVSKER---GEKLALDYGIKFME-TSAKANINVENAFFTLARDIKAKMD 172
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 87.2 bits (215), Expect = 2e-22
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 5/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G S GKT+ L+R D + + KVK K I IWD GQE+
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +Y R G I + D T+ E V+ + + + +L++ NK D+ +
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA-QVLLVGNKCDMEDER 126
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ L A + + L +I +K
Sbjct: 127 VVSSERGRQLADHLGFEFFE----ASAKDNINVKQTFERLVDVICEK 169
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 86.1 bits (212), Expect = 8e-22
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIG---------FNCEKVKGQIGKCKGIN 69
+ ++ LG GKTT LYR +++ + T+G +N + G GK ++
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 70 FLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPIL 129
+WD GQE+ R L ++ R G + + D T + V+ + + N N I+
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 130 ILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
++ NK DLP+ ++ + + + + Y + T A TG + + + L LI+K+
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFE-TSAATGQNVEKAVETLLDLIMKRM 181
Query: 190 K 190
+
Sbjct: 182 E 182
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 85.1 bits (209), Expect = 1e-21
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ +V LGLD+AGKTT L+ LK D+ VPT+ E++ G+ F +D+GG
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL-----TIAGMTFTTFDLGGH 67
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +WK+Y +GI+F++D D ER+ E K EL + + NVPILIL NK D P
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 139 NAIQIKQIEKLLGLYELN-----------NMHLYYIQATCAITGDGLHEGINELYQLI 185
AI +++ ++ GLY N + + G EG + Q I
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 83.4 bits (205), Expect = 5e-21
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L++ ++ + K K + IWD GQE+
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T E + L ++IL + +A
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ + + N + T A+TG+ + E + + IL K +
Sbjct: 126 REVTFLEASRFAQENELMFL---ETSALTGENVEEAFVQCARKILNKIE 171
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 82.9 bits (204), Expect = 2e-20
Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 21/191 (10%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++LG +GK+T + +++ V T G K + +NF ++DVGGQ
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHV---VLTSGIFETKFQV-----DKVNFHMFDVGGQRDE 60
Query: 82 RPLWKSYTRCTDGIIFVIDST----------DVERMEEVKIELIKTIKNNDNFNVPILIL 131
R W IIFV+ S+ R++E N + +++
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191
NKQDL + K+ + Y A G + I +
Sbjct: 121 LNKQDLLAEKVLAGKSKIEDYFPEFAR---YTTPEDATPEPGEDPRVTRAKYFIRDEFLR 177
Query: 192 QKTNKMNKVKK 202
T +
Sbjct: 178 ISTASGDGRHY 188
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 81.2 bits (199), Expect = 9e-20
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++ +GL +GKT RL QY +T +I + K + LI G +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN-SLTLIDLPGHESLR 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVER-MEEVKIELIKTIKNNDNFN--VPILILANKQDLP 138
L + ++FV+DS +R +++V L + + ++ +LI NKQD+
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 139 NAIQIKQIEKLL 150
A K I++ L
Sbjct: 122 MAKSAKLIQQQL 133
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 79.6 bits (195), Expect = 3e-19
Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 38/201 (18%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ +++LG +GK+T + +++ + VPT G Q + + DVGGQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFR-----MVDVGGQR 56
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVER----------MEEVKIELIKTIKNNDNFNVPIL 129
R W I+F++ ++ ++ MEE K I N ++
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 130 ILAN-KQDLPNAIQIKQIEKLLGLYELNNM---------------------HLYYIQATC 167
+ N K L I + Y+ + Y TC
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176
Query: 168 AITGDGLHEGINELYQLILKK 188
A + + + IL+
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 77.1 bits (188), Expect = 1e-18
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ I++LGLD AGKTT LYRL+ + + T+PTIGFN E V K + F +WD+GG
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY-----KNLKFQVWDLGGLT 60
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+RP W+ Y TD +I+V+DS D +R+ K EL+ ++ + +++ ANKQD+
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
A+ ++ LGL L + + T A G GL E + L + + ++
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFK-TSATKGTGLDEAMEWLVETLKSRQ 169
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 77.2 bits (189), Expect = 1e-18
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ L R +++ + + K I IWD GQE+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +Y R G + V D E V+ +K ++++ + N+ I+++ NK DL +
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ E +L +I+ T A+ + E + I + ++
Sbjct: 126 AVPTDE---ARAFAEKNNLSFIE-TSALDSTNVEEAFKNILTEIYRIVSQKQ 173
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 75.3 bits (184), Expect = 6e-18
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L + ++ + K I IWD GQE
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T ++ + + + N+ I+++ NK DL
Sbjct: 66 RSITRSYYRGAAGALLVYDITR-RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE--- 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ +++ G L +++ T A T + E + I +K +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFME-TSAKTACNVEEAFINTAKEIYRKIQ 169
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 74.9 bits (183), Expect = 9e-18
Identities = 34/168 (20%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL--NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
++++G GKT L R K +L + T+G + + K + +WD GQE
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK-VKLQMWDTAGQE 67
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R + +Y R ++ + D T+ + ++ L + + + +V +++L NK D +
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH-DVALMLLGNKVDSAH 126
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+K+ + G L +++ T A TG + + + + +
Sbjct: 127 ERVVKRED---GEKLAKEYGLPFME-TSAKTGLNVDLAFTAIAKELKR 170
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 75.3 bits (184), Expect = 1e-17
Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 40/202 (19%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
V I++LG +GK+T L +++ PT G + + + K + DVGGQ
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFK-----MVDVGGQR 55
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELIKTIKNNDNFNVPIL 129
R W I+F++ S++ + R+ E + N NV I+
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 130 ILANKQ-DLPNAIQIKQI----------------------EKLLGLYELNNMHLYYIQAT 166
+ NK L +Q+ I E G Y T
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFT 175
Query: 167 CAITGDGLHEGINELYQLILKK 188
AI + + ++ IL
Sbjct: 176 TAINTENIRLVFRDVKDTILHD 197
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 74.5 bits (182), Expect = 1e-17
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++G GK+ L++ +++ P + + I IWD GQE+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R G + V D T + +N N N I+++ NK DL
Sbjct: 67 RAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ E L +++ A TG+ + + E + I
Sbjct: 126 DVTYEE---AKQFAEENGLLFLE-ASAKTGENVEDAFLEAAKKI 165
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 73.9 bits (180), Expect = 2e-17
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 2/171 (1%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
+S+ +V+LG + GK++ + R + + + + F IWD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE+ L Y R + V D T + + + + + + + ++ I ++ NK D+
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDM 120
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ + G L + + T A TG+ +++ + + I K
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFE-TSAKTGENVNDVFLGIGEKIPLK 170
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 73.3 bits (179), Expect = 4e-17
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
IV++G GKT + R + +K + + IWD GQE+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R + +SY R + +I D T E + L + + N + +L+
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+Q +YY++ T A D + + +L ++ + +
Sbjct: 128 VSQQR----AEEFSEAQDMYYLE-TSAKESDNVEKLFLDLACRLISEAR 171
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 73.8 bits (180), Expect = 4e-17
Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 41/201 (20%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
V +++LG +GK+T + ++K G K ++F ++DVGGQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKI----IHEAGTGIVETHF-----TFKDLHFKMFDVGGQR 53
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVE----------RMEEVKIELIKTIKNNDNFNVPIL 129
R W IIF + +D + RM E N + I+
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 130 ILAN-KQDLPNAIQIKQIE---------------------KLLGLYELNNMHLYYIQATC 167
+ N K I+ + + L + + Y TC
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173
Query: 168 AITGDGLHEGINELYQLILKK 188
A + + + +I+K
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 72.4 bits (176), Expect = 8e-17
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
+ + ++GL +GKTT + + Q+ + +PT+GFN K+ + +WD+GGQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 57
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
+ R +W+ Y R I++++D+ D E++E K EL + +P+L+L NK+DLP
Sbjct: 58 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
A+ K++ + + L + + + D + + L Q
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYS-ISCKEKDNIDITLQWLIQHS 163
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 69.6 bits (169), Expect = 1e-15
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG GKT+ + R +++ + T K K +N IWD GQE+
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y R ++G I V D TD + ++VK + + K N ++ +
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV--GNKIDLEKE 123
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ I++ E Y+ T A G+ E +L + +++
Sbjct: 124 RHVSIQEAESYAESVGAKHYH---TSAKQNKGIEELFLDLCKRMIE 166
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 67.3 bits (163), Expect = 8e-15
Identities = 37/190 (19%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ V++G + GKT L +++ VPT+ N G+ + +D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL--FDTAG 60
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE L TD + E VK E + P L++ + DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK-EKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 138 P-----------NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLIL 186
N + E L Y A+T GL +E L
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYV--ECSALTQKGLKNVFDEAILAAL 177
Query: 187 KKRKLQKTNK 196
+ + +K+ +
Sbjct: 178 EPPEPKKSRR 187
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 66.9 bits (162), Expect = 1e-14
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 5/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++M+G GK+ + +D+++ + + K + + I D GQE
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-ILDTAGQEDY 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ +Y R +G + V T++E + ++ ++ NVP L++ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
Q+ E + N ++ T A T + + +L + I +
Sbjct: 126 QVSVEEAKNRADQWNVNYVE----TSAKTRANVDKVFFDLMREIRAR 168
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 67.4 bits (163), Expect = 1e-14
Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I++ G ++GKT+ L L D TV + G + D G KL
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL------SAADYDGSGVTLVDFPGHVKL 59
Query: 82 RPLWKSY-----TRCTDGIIFVIDSTDVERMEEVKIELIKT---IKNNDNFNVPILILAN 133
R Y I V + D +++ L+ +++ + ILI N
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMH-LYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
K +L A +I+ L E+ + + ++ +
Sbjct: 120 KSELFTARPPSKIKDALE-SEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFK 178
Query: 193 KTNKMNKVK 201
N V
Sbjct: 179 FANLEASVV 187
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 66.2 bits (160), Expect = 1e-14
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG + GK++ + R Q+ + + + F IWD GQE+
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y R I V D T+ E K + + + N+ I + NK DL N
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP-NIVIALSGNKADLANKR 127
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ E + + + + T A T ++E + + + K
Sbjct: 128 AVDFQEAQSYADDNSLLFME----TSAKTSMNVNEIFMAIAKKLPK 169
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 65.7 bits (159), Expect = 2e-14
Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V+LG GK+ + ++ + + + ++ I D G E+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVD-SSPSVLEILDTAGTEQF 64
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ Y + G I V + + +++K + I+ VP++++ NK DL +
Sbjct: 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ E G +++ T A + ++EL+ I+++
Sbjct: 125 EVSSSE---GRALAEEWGCPFME-TSAKSK----TMVDELFAEIVRQ 163
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 63.9 bits (154), Expect = 1e-13
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG GKT+ ++R D+Y TIG + + + K +WD GQE+
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKN---NDNFNVPILILANKQDL 137
+ L ++ R D + V D T+ E +K + + + N P +IL NK D
Sbjct: 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 124
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
+ +I + L + ++ T A + E+ + L++ +
Sbjct: 125 EESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIARSALQQNQ 175
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 62.3 bits (150), Expect = 4e-13
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V LG S GKT+ + R +D + NT K + + I +WD GQE+
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L SY R + + V D T+V ++ + I ++ +V I+++ NK DL +
Sbjct: 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKR 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
Q+ IE+ + N+ T A G + + + +
Sbjct: 122 QV-SIEEGERKAKELNVMFIE---TSAKAGYNVKQLFRRVAAAL 161
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 62.0 bits (149), Expect = 8e-13
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+++LG GKT+ + + ++ TIG + + + + + IWD GQE+
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQER 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIE---LIKTIKNNDNFNVPILILANKQDL 137
+ L ++ R D + V D T + + + D N P ++L NK DL
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTNK 196
N + + + N + T A + + + + LK+ +
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFE----TSAKEAINVEQAFQTIARNALKQETEVELYN 178
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 60.7 bits (146), Expect = 2e-12
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 7/177 (3%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIW 73
A SS +++LG GK++ + R +++ + K + IW
Sbjct: 1 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
Query: 74 DVGGQEKLRPLWKSYTRCTDGII---FVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
D GQE+ R L + R +D + V DS + + K E I + + P +I
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120
Query: 131 LANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
L NK D+ + E+ N + Y+ T A + E + +L
Sbjct: 121 LGNKIDISE--RQVSTEEAQAWCRDNGDYPYF--ETSAKDATNVAAAFEEAVRRVLA 173
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 60.4 bits (145), Expect = 2e-12
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+++G + GKT YR ++ + + + + I +WD GQE+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 82 RPL-WKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
R + Y R ++FV D T++ + + + ++ ++P +++ NK DL +
Sbjct: 65 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS- 123
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINEL 181
+ + ++M L+ A D + L
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 59.3 bits (142), Expect = 9e-12
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGG 77
++ V++G + GKT L + + +PT+ N GK +N +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP--VNLGLWDTAG 62
Query: 78 QEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDL 137
QE L TD + E V+ + ++++ N PI+++ K DL
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDL 121
Query: 138 PNAIQIKQIEKLLGLYELNNMH----------LYYIQATCAITGDGLHEGINELYQLILK 187
+ + K L + + Y++ A+T GL +E + +L
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGLKTVFDEAIRAVLC 180
Query: 188 K 188
Sbjct: 181 P 181
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 58.1 bits (139), Expect = 2e-11
Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 5/174 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S + +V++G GK+ + +++ + + ++ G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
+E + Y R G + V D + EV + ++ D + P++++ NK D
Sbjct: 64 QEEFGAM-REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
L + Q+ + E + + A + E +L + + K ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFE----ASAKLRLNVDEAFEQLVRAVRKYQE 172
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 57.7 bits (138), Expect = 2e-11
Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ + ++ + + + D GQE+
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH-TEIDNQWAILDVLDTAGQEEF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ + Y R DG + V TD E V ++ D + P++++ANK DL +
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
++ + + + N + YI+ + + + ++L ++I ++
Sbjct: 126 KVTRDQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 57.3 bits (137), Expect = 4e-11
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query: 14 ASGSSSV--HIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINF 70
A G ++ V++G + GKT L D + VPT+ + GK
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ--YLL 59
Query: 71 LIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILI 130
++D GQE L TD + + + VK E + +K NVP L+
Sbjct: 60 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLL 118
Query: 131 LANKQDLPNAIQIKQ-----------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGIN 179
+ + DL + + +E+ L + Y A+T GL +
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV--ECSALTQKGLKTVFD 176
Query: 180 ELYQLIL 186
E IL
Sbjct: 177 EAIIAIL 183
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 56.9 bits (136), Expect = 4e-11
Identities = 30/166 (18%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ +L + +++ + + + + + I D GQE+
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEY 64
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ Y R +G + V + + E++ + + D+ +VP++++ NK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ + + + YI+ T A T G+ + L + I +
Sbjct: 125 VESRQAQ----DLARSYGIPYIE-TSAKTRQGVEDAFYTLVREIRQ 165
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 55.9 bits (133), Expect = 9e-11
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
Query: 19 SVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQ 78
++ +V++G + GK++ + R + + + + ++WD GQ
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 79 EKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLP 138
E+ + K+Y R + V +TD E E + K + ++P ++ NK DL
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLL 119
Query: 139 NAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ IK E L T + E L + L+
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYR----TSVKEDLNVSEVFKYLAEKHLQ 164
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 55.8 bits (133), Expect = 1e-10
Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V+LG GK+ + ++ PTI + K C+ I D G E+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ--VEVDCQQCMLEILDTAGTEQ 63
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ Y + G V T +++ + ++ D +VP++++ NK DL +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
+ + + + N + A + ++E +L + I +
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLE---SSAKSKINVNEIFYDLVRQINR 167
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 55.8 bits (133), Expect = 1e-10
Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G + GKT L DQ+ VPT+ N K + +WD G E
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGLED 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
L TD I+ + +E + + +K+ NVPI+++ NK+DL N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 121
Query: 141 IQIKQ-----------IEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
++ E+ + Y A T DG+ E + L+
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM--ECSAKTKDGVREVFEMATRAALQ 177
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 55.0 bits (131), Expect = 2e-10
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ + +LG GK++ ++R D + + K + + FLIWD G E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ R L Y R + I V D T E +K + + ++ V +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+++ K +++H +++ T A ++E E+ + I
Sbjct: 125 REVMERDAKDYA----DSIHAIFVE-TSAKNAININELFIEISRRI 165
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 53.5 bits (127), Expect = 9e-10
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 8/171 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GKTT + R ++ I F +WD GQEK
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
L Y I + D T + V ++ N+PI++ NK D+ +
Sbjct: 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK 123
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQ 192
+ +L Y A + + L + ++ L+
Sbjct: 124 VKAKSIV-----FHRKKNLQYYD-ISAKSNYNFEKPFLWLARKLIGDPNLE 168
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 52.3 bits (124), Expect = 2e-09
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 7/171 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+ + G GK++ + R + + +PT+ +V I D G +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSHQ 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ + I V T + +EE+K + + + ++L + +
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122
Query: 141 IQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKL 191
+ Q + L T A + E EL L K+R +
Sbjct: 123 SREVQSSEAEALARTWKCAFME---TSAKLNHNVKELFQELLNLE-KRRTV 169
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 52.0 bits (123), Expect = 3e-09
Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 5/169 (2%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+V++G GK+ + ++ + + + + I D GQE+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQ-CVIDDRAARLDILDTAGQEEF 66
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ + Y R +G + V TD EE+ + ++ D P++++ NK DL +
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
Q+ Q E +L ++ A + + +EL ++I K ++
Sbjct: 127 QVTQEEGQQLARQLKVTYME----ASAKIRMNVDQAFHELVRVIRKFQE 171
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 49.7 bits (117), Expect = 2e-08
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 20/179 (11%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
IV++G GKT L+ D + N VPT+ N + I +WD G
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS--FEIDTQRIELSLWDTSGSPY 62
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNA 140
+ +D ++ D + E ++ V + K N +L++ K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKK-WKGEIQEFCPNTKMLLVGCKSDLRTD 121
Query: 141 IQIK-----------QIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ ++ + + Y A+ + +++ +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYI--ECSALQS---ENSVRDIFHVATLA 175
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 48.2 bits (113), Expect = 5e-08
Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 6/169 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+++LG GK+ + G ++ + + + +++D+ Q+
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS--IVVDGEEASLMVYDIWEQDGG 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
R L D + V TD E+ ++ + +VPI+++ NK DL +
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRK 190
++ E + + T A + + + I +R
Sbjct: 122 EVSVDEGRACAVVFDCKFIE----TSAALHHNVQALFEGVVRQIRLRRD 166
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 46.5 bits (109), Expect = 2e-07
Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 10/176 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+ + +LG +GK++ ++R Y T +K + + LI + G
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE--MLVDGQTHLVLIREEAGAP 63
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILILANKQDL 137
++ D +IFV D + V + +++ + + ++ + +
Sbjct: 64 -----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118
Query: 138 PNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
+ + + Y + TCA G + E+ Q ++ RK Q+
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYE-TCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 46.2 bits (108), Expect = 4e-07
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+ ++G +AGK++ L + + P G + + F + D+ G +
Sbjct: 4 VGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 62
Query: 82 RPLWKSYTR-------CTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
K T +++V+D+ D + + P L+ NK
Sbjct: 63 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
DL +K + L + A+TG GL L+ L+
Sbjct: 123 VDLLEEEAVKALADALAR------EGLAVLPVSALTGAGLPALKEALHALV 167
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 45.9 bits (107), Expect = 5e-07
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 6/170 (3%)
Query: 22 IVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
+V++G GK+T D + +G + + + L+ +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 80 KLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPN 139
+ L + D + V TD E+ I+ + ++PI+++ NK DL
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 125
Query: 140 AIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKR 189
++ E + + T A + E + + + +R
Sbjct: 126 CREVSVSEGRACAVVFDCKFIE----TSAAVQHNVKELFEGIVRQVRLRR 171
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 44.3 bits (103), Expect = 1e-06
Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 5/171 (2%)
Query: 17 SSSVHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
S S I +LG S GK++ + Q++++ N + + + + D
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN-GQEYHLQLVDTA 60
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
GQ++ ++Y+ +G I V T ++ E +K+ K + +PI+++ NK+D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILK 187
L I E N L + A + + K
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLE----SSAKENQTAVDVFRRIILEAEK 167
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 41.5 bits (96), Expect = 1e-05
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 9/174 (5%)
Query: 18 SSVHIVMLGLDSAGKTTALYRLKFDQYL-NTVPTIGFNCEKVKGQIGKCKGINFLIWDVG 76
+ V + + G GK+ + R +++ PT+ + + L
Sbjct: 1 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA-- 58
Query: 77 GQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQD 136
++ + + R +G + V D TD EEV + NV ++++ NK D
Sbjct: 59 -GQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 117
Query: 137 LPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDG-LHEGINELYQLILKKR 189
L ++ Q+ E EL A TG+G + E EL + + ++R
Sbjct: 118 LDHSRQVSTEEGEKLATELACAFYE----CSACTGEGNITEIFYELCREVRRRR 167
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 39.6 bits (91), Expect = 5e-05
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 28/177 (15%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
+V++G + GK+T L RL + G + + +I +GI F I D G
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI-VIRGILFRIVDTAGVRS 60
Query: 81 LRPLW---------KSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILIL 131
D ++FV+D++ E+ KI K
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI------ 114
Query: 132 ANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
NK D+ I ++I+ LG ++ A+ G EG+ +L + I ++
Sbjct: 115 -NKVDVVEKINEEEIKNKLGTDR-------HMVKISALKG----EGLEKLEESIYRE 159
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.8 bits (86), Expect = 3e-04
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 21 HIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEK 80
I + G + GK++ + L + L + + + I + + G +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 81 LRPLWKSYTRCTDGIIFVIDSTDVER-----MEEVKIELIKTIKNNDNFNVPILILANKQ 135
+ +++ R + I + + ++ + + +P++++A K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 136 DLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D + + K++ LN + + T G E + ++I
Sbjct: 145 DKIPKGKWDKHAKVV-RQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 36.7 bits (83), Expect = 8e-04
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 9/171 (5%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVP-----TIGFNCEKVKGQIGKCKGINFLIWD 74
+ + G +AGK++AL L + L T N +V + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
V + K + ++ +K + I+ + N+ +L+L K
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
D + K ++ L ++ ++ +G+++L Q +
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK----QGVDKLRQKL 183
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 34.7 bits (78), Expect = 0.003
Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 17/180 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
I+ G + GK+T +YRL + + G + ++ + K I+ +
Sbjct: 3 IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVER----------------MEEVKIELIKTIKNNDNFN 125
+ I + DV ++ + +
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 126 VPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+P ++ NK D +Q + A GD + N ++++I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.1 bits (77), Expect = 0.005
Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 18/175 (10%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
+ ++G S GK+T L + G + G +F++ D+ G +
Sbjct: 4 VGLVGFPSVGKSTLLSVV-SSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 82 RPLWK-------SYTRCTDGIIFVIDSTDVERMEEVK----IELIKTIKNNDNFNVPILI 130
+ T I+ VID + +E + I + N P +I
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 131 LANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
+ANK D+P A + L ++ Y + A+T +GL E + E+ +
Sbjct: 123 VANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.2 bits (74), Expect = 0.012
Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 16/171 (9%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKG-------QIGKCKGINFLIWD 74
+ ++G + GK+T L L + P ++++G QI
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
E + + +++V+D E+ + + + +
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 135 QDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLI 185
P E + + A+ + E +L L+
Sbjct: 128 AKYPEEAMKAYHE---------LLPEAEPRMLSALDERQVAELKADLLALM 169
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.3 bits (69), Expect = 0.050
Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 7/167 (4%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
++++G + GK+T +L + G + V+ + L+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTC--GVFD 60
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
P + + + +I D+ I + + + A
Sbjct: 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+++ E+ + EL ++ A ++ + + I+KK
Sbjct: 121 NLREFEREVK-PELYSLGFGEPIPVSAEHN----INLDTMLETIIKK 162
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 31.2 bits (70), Expect = 0.054
Identities = 28/194 (14%), Positives = 55/194 (28%), Gaps = 32/194 (16%)
Query: 20 VHIVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGI----------- 68
V++ +G GKTT + E + +GI
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63
Query: 69 ---NFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD--VERMEEVKIELIKTIKNNDN 123
++ D G + T DG I V+ + D + + E +
Sbjct: 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH------LLLARQI 117
Query: 124 FNVPILILANKQDLPNAIQ-----IKQIEKLLGLYELN--NMHLYYIQATCAITGDGLH- 175
+++ NK D + +I +LL + + A CA+
Sbjct: 118 GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPEL 177
Query: 176 --EGINELYQLILK 187
+ + +L +
Sbjct: 178 GLKSVQKLLDAVDT 191
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 30.1 bits (67), Expect = 0.15
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 22 IVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKG-----QIGKCKGINFLIWD 74
++++G++ GKTT + +L + V + + G + GK I +
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 68
Query: 75 VGGQEKLRPLWKSYTRCTDGIIFVIDST------DVERMEEVKIEL-IKTIKNNDNFNVP 127
G G + T MEE+K + +
Sbjct: 69 EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEV 128
Query: 128 ILILANKQDLPNAIQIKQIEKLLGL 152
L+L Q K+ + +GL
Sbjct: 129 WLVLDAVTGQNGLEQAKKFHEAVGL 153
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 28.8 bits (64), Expect = 0.36
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 3/113 (2%)
Query: 66 KGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDSTD--VERMEEVKIELIKTIKNNDN 123
+ D G + T D I +I E + +
Sbjct: 82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT 141
Query: 124 FNVPILILA-NKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLH 175
V LI+A NK D + + E + Y + + G +
Sbjct: 142 LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWN 194
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 0.74
Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 22 IVMLGLDSAGKTTAL----YRLKFDQYLNTVPTIGFN----CEKVKGQIGKCKGINFLIW 73
++GL +GKTT K + E+++ K +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 72
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D E +R + R + ++D+ +++E + + +K + +L+L
Sbjct: 73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 132
Query: 134 KQDLPNAIQIKQIEKLLGL 152
+ ++ +G+
Sbjct: 133 MTGQEALSVARAFDEKVGV 151
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.3 bits (59), Expect = 0.91
Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 6/167 (3%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKL 81
V++GL +GK+T RL + L V + + + I + +
Sbjct: 4 AVLVGLPGSGKSTIGRRLA--KALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIE 60
Query: 82 RPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAI 141
+ ++ DG++ + + + + + P
Sbjct: 61 EDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLA 120
Query: 142 QIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKK 188
+ EK L LY AT + + + + IL +
Sbjct: 121 GPDRAEKYRALMA-KRAPLYRRVATMRVDTNRR--NPGAVVRHILSR 164
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 27.1 bits (59), Expect = 1.4
Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 93 DGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGL 152
D + ++D+ IE +KN P ++L NK D +A +Q ++
Sbjct: 17 DIVYELVDARIPMSSRNPMIE--DILKNK-----PRIMLLNKADKADAAVTQQWKEHFEN 69
Query: 153 YELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQKTN 195
+ ++ + + + I + ++ + ++
Sbjct: 70 QGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA 112
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 27.2 bits (60), Expect = 1.5
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 126 VPILILANKQDLPNAIQ--IKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELY 182
V I D I + + LYEL + G+HE + +
Sbjct: 247 VRITTRYEGYDFRRTILSTVHEFGH--ALYELQQDERFMFTPIAGGVSLGIHESQSRFW 303
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.9 bits (58), Expect = 1.7
Identities = 11/143 (7%), Positives = 36/143 (25%)
Query: 43 QYLNTVPTIGFNCEKVKGQIGKCKGINFLIWDVGGQEKLRPLWKSYTRCTDGIIFVIDST 102
L N + I+ + ++++ D
Sbjct: 75 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPE 134
Query: 103 DVERMEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYY 162
+++ + + + + NK DL + + ++ K + L
Sbjct: 135 ILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKL 194
Query: 163 IQATCAITGDGLHEGINELYQLI 185
+ + + + E+ +
Sbjct: 195 DPSMQGLMAYKMCSMMTEVLPPV 217
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1
(MT0001), dimerisation domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 191
Score = 26.3 bits (58), Expect = 2.1
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 2 GKNSAAFFENLQASGSSSVHI-VMLGLDSAGKTTALYRLKFDQYLNTVP 49
+ + ++ + ++ G G L + D ++NT+P
Sbjct: 122 ASPITSILDEVKTRMRGAREAAILFG----GPYKGLPEIDADIWVNTLP 166
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.7 bits (55), Expect = 3.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 22 IVMLGLDSAGKTTALYRLK 40
++ G+ GK+T L ++K
Sbjct: 4 GIVTGIPGVGKSTVLAKVK 22
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 3.3
Identities = 19/145 (13%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 22 IVMLGLDSAGKTTALYRL--KFDQYLNTVPTIGFNCEKVKG-----QIGKCKGINFLIWD 74
I+++G+ GK T +L + + V +G + + Q+G+ G+ +
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV-YGE 73
Query: 75 VGGQEKLRPLWKSYTRCTDGI--IFVIDSTDVERMEEVK--IELIKTIKNNDNFNVPILI 130
G ++ + + + I ++D+ E +E +K I + L+
Sbjct: 74 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLV 133
Query: 131 LANKQDLPNAIQIKQIEKLLGLYEL 155
+ + + + +
Sbjct: 134 IDASIGQKAYDLASKFNQASKIGTI 158
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 25.8 bits (56), Expect = 4.3
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 35 ALYRLKFDQYLNTVPTIGFNCEKVKGQIGKCKGI------NFLIWDVGGQEKLRPLWKSY 88
+ ++ +F+ + P NC VKG + + I G + P S+
Sbjct: 7 SSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDLEILPNGLAFI--SSGLK--YPGIMSF 62
Query: 89 TRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFN 125
G I ++D + E ++E+I + +FN
Sbjct: 63 DPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFN 98
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 25.3 bits (54), Expect = 4.9
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 22 IVMLGLDSAGKTTALYRL 39
+V+ G+ G TT+
Sbjct: 4 VVVTGVPGVGSTTSSQLA 21
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 25.3 bits (54), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 22 IVMLGLDSAGKTTALYRLK 40
IV+ G+D AGK+T +L
Sbjct: 6 IVLEGVDRAGKSTQSRKLV 24
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.1 bits (54), Expect = 5.2
Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 8/134 (5%)
Query: 22 IVMLGLDSAGKTTAL----YRLKFDQY---LNTVPTIGFNCEKVKGQIGKCKGINFLIWD 74
I+++G++ GKTT+ + L T + G+ G +
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 73
Query: 75 VGGQEKLRPLWKSYTRCTDGI-IFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
G + +ID+ ++ +E ++ + +P
Sbjct: 74 EGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHET 133
Query: 134 KQDLPNAIQIKQIE 147
+ +
Sbjct: 134 LLVIDATTGQNGLV 147
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 25.4 bits (54), Expect = 5.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 22 IVMLGLDSAGKTTALYRLK 40
I + G+D AGK T + +L
Sbjct: 3 IAIEGVDGAGKRTLVEKLS 21
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 24.8 bits (54), Expect = 5.7
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 107 MEEVKIELIKTIKNNDNFNVPILILANKQDLPNAIQIKQIEKLLGLYELNNMHLYYIQAT 166
+EEV IE + N P+ + +LP+ Q+ +IE+ L + + + ++
Sbjct: 1 LEEV-IEQL------REANEPVPV---PLELPDEDQLVEIEEQLFI-NIPFVFKEFLLTV 49
Query: 167 CAITGDGLH 175
+ L
Sbjct: 50 SDVVYGSLE 58
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 24.9 bits (53), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 IVMLGLDSAGKTTALYRLK 40
I++ GLD GKTT L
Sbjct: 6 ILIEGLDRTGKTTQCNILY 24
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
protein TM1585) {Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 25.3 bits (55), Expect = 6.8
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 92 TDGII-------FVIDSTDVERMEEVKIELIKTIKNNDNFNV 126
TDG ++D + + ++ + + + +KNND++N
Sbjct: 347 TDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNA 388
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.5 bits (52), Expect = 7.8
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 10/144 (6%)
Query: 22 IVMLGLDSAGKTTALYRLKFDQYLNT--VPTIGFNCEKVKGQIGKCKGINFLIWDVGGQE 79
IVM+GL + GKT +L +YLN VPT FN + + + K +F + +E
Sbjct: 5 IVMVGLPARGKTYISKKLT--RYLNFIGVPTREFNVGQYRRDMVKT-YKSFEFFLPDNEE 61
Query: 80 KLRPLWKSYTRCTDGIIFVI-----DSTDVERMEEVKIELIKTIKNNDNFNVPILILANK 134
L+ + + + + + + + + +
Sbjct: 62 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 135 QDLPNAIQIKQIEKLLGLYELNNM 158
P I ++ LG + N
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNR 145
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 24.6 bits (52), Expect = 7.8
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 22 IVMLGLDSAGKTTALYRLK 40
+ +LG +S+GK+ + +L
Sbjct: 10 VAILGGESSGKSVLVNKLA 28
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 24.6 bits (52), Expect = 7.9
Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 27/186 (14%)
Query: 30 AGKTTALYRL-----------KFDQYLNTVPTIGFNCEKVKGQIGK-----CKGINFLIW 73
GKTT L + Q++ E + G K
Sbjct: 16 HGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFI 75
Query: 74 DVGGQEKLRPLWKSYTRCTDGIIFVIDSTDVERMEEVKIELIKTIKNNDNFNVPILILAN 133
D G E L K D I ++D + + + + I + P ++ AN
Sbjct: 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LRMYRTPFVVAAN 130
Query: 134 KQDLPNAIQIKQIEKLLGLYELNNMHLYYIQATCAITGDGLHEGINELYQLILKKRKLQK 193
K D + ++ + + + ++ ++E + +L++ + + +
Sbjct: 131 KIDRIHGWRVHEGRPFMETFSKQDIQ------VQQKLDTKVYELVGKLHEEGFESERFDR 184
Query: 194 TNKMNK 199
Sbjct: 185 VTDFAS 190
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 24.6 bits (52), Expect = 8.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 14 ASGSSSVHIVMLGLDSAGKTTALYRLK 40
A G+ +++ G +GKTT L +
Sbjct: 4 AEGTQPFTVLIEGNIGSGKTTYLNHFE 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.398
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 735,435
Number of extensions: 34390
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 106
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)