BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13151
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 43.9 bits (102), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 126 QQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVES-YIGRPPNCRP 184
+Q+ E +STA + R + PCL +PC N +CR N C C + Y+GR +C
Sbjct: 374 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR--SCER 431
Query: 185 ECTI 188
E T+
Sbjct: 432 EATV 435
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 126 QQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVES-YIGRPPNCRP 184
+Q+ E +STA + R + PCL +PC N +CR N C C + Y+GR +C
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR--SCER 656
Query: 185 ECTI 188
E T+
Sbjct: 657 EATV 660
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 126 QQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVES-YIGRPPNCRP 184
+Q+ E +STA + R + PCL +PC N +CR N C C + Y+GR +C
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR--SCER 656
Query: 185 ECTI 188
E T+
Sbjct: 657 EATV 660
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 46 RPECTINAECAGNLACINERCKDP 69
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 183 RPECTINAECAGNLACINERCKDP 206
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 3 TYHAGTASYLVVVAVDIRRTDPHIGNTPACSCVE--SYIGRPPNCRPECTINAECAGNLA 60
TY+AGT RR H G C V Y G P T A +
Sbjct: 134 TYYAGTTQ-------GWRREVVHFGKLHLCGSVRFRWYQGFYPAGSQPVT----WAIDNV 182
Query: 61 CINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTG 97
I +C++ C G H SC+ + +C CDPG++G
Sbjct: 183 YIGPQCEEMCYG----HGSCI---NGTKCICDPGYSG 212
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 73 SCGAHASCVVLNHTPRCTCDPGFTG 97
SC H CV + C CDPGF+G
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSG 150
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 210 SCGAHASCVVLNHTPRCTCDPGFTG 234
SC H CV + C CDPGF+G
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSG 150
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 73 SCGAHASCVVLNHTPRCTCDPGFTG 97
SC H CV + C CDPGF+G
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSG 150
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 210 SCGAHASCVVLNHTPRCTCDPGFTG 234
SC H CV + C CDPGF+G
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSG 150
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 33 SCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCD 92
CVE YI R + C C+ P SC H CV + + C CD
Sbjct: 89 DCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQ---PWSCSGHGECVEIINNYTCNCD 145
Query: 93 PGFTG 97
G+ G
Sbjct: 146 VGYYG 150
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 170 SCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCD 229
CVE YI R + C C+ P SC H CV + + C CD
Sbjct: 89 DCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQ---PWSCSGHGECVEIINNYTCNCD 145
Query: 230 PGFTG 234
G+ G
Sbjct: 146 VGYYG 150
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 66 CKDPCPG-SCGAHASCVVLNHTPRCTCDPGFTGDP 99
CKD C G CG +C +L PRC C P +G P
Sbjct: 69 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLP 103
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 203 CKDPCPG-SCGAHASCVVLNHTPRCTCDPGFTGDP 236
CKD C G CG +C +L PRC C P +G P
Sbjct: 69 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLP 103
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 66 CKDPCPG-SCGAHASCVVLNHTPRCTCDPGFTGDP 99
CKD C G CG +C +L PRC C P +G P
Sbjct: 60 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLP 94
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 203 CKDPCPG-SCGAHASCVVLNHTPRCTCDPGFTGDP 236
CKD C G CG +C +L PRC C P +G P
Sbjct: 60 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLP 94
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 99 PFSTCFYIQERNHMVMGSRDQMVLVVGQQLLERK 132
P+ T FY++ N + G+ D++ + + LL++K
Sbjct: 101 PYRTAFYLEVENDALPGAVDRLADAIAEPLLDKK 134
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 3 TYHAGTASYLVVVAVDIRRTDPHIGNTPACSCVE--SYIGRPPNCRPECTINAECAGNLA 60
TY+AGT RR H G V Y G P T A +
Sbjct: 134 TYYAGTTQ-------GWRREVVHFGKLHLAGSVRFRWYQGFYPAGSQPVT----WAIDNV 182
Query: 61 CINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTG 97
I +C++ C G H SC+ + +C CDPG++G
Sbjct: 183 YIGPQCEEMCYG----HGSCI---NGTKCICDPGYSG 212
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 8 TASYLVVVAVDIRRTDPHIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCK 67
T S+ + + + T G T +C+ Y+ C + E N CI +RC+
Sbjct: 8 TLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCR 67
Query: 68 DP 69
P
Sbjct: 68 HP 69
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 145 SGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCK 204
G+ C P+PC +C+ N+ C C + G+ NC + T N + N RCK
Sbjct: 47 DGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGK--NCELDATCNIK--------NGRCK 96
Query: 205 DPCPGSCGAHASC 217
C + C
Sbjct: 97 QFCKTGADSKVLC 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,746,892
Number of Sequences: 62578
Number of extensions: 377726
Number of successful extensions: 726
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 86
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)