RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13151
(256 letters)
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 35.7 bits (83), Expect = 0.003
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
G+ C SPC C+ C+C+E + G+ NC E C+ +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCSLD---------- 87
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
+ C ++ C+C G+T
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLA 113
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 36.7 bits (85), Expect = 0.003
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
G+ C SPC C+ C+C+E + G+ NC E C+ +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCSLD---------- 87
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
+ C ++ C+C G+T
Sbjct: 88 ----NGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 29.0 bits (65), Expect = 1.0
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRP--ECTINAECAGNLACINERCK 204
P P PCG ++ R + + +P ++ ++
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLD-PTENPFDLLDFNQT 178
Query: 205 DPCPGS 210
P G
Sbjct: 179 QPERGD 184
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
G+ C P+PC +C+ N+ C C + G+ C ++A C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK------NCELDATC----------NIK 91
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
+ C+C G+
Sbjct: 92 NG---RCKQFCKTGADSKVLCSCTTGYRLA 118
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 35.6 bits (82), Expect = 0.010
Identities = 42/229 (18%), Positives = 52/229 (22%), Gaps = 74/229 (32%)
Query: 27 GNTPACSCVESYIGR---PPNCRPECTINAECAGNLACI------NERCKDP-CPGSCGA 76
GNT + + + C C C C C+ C C
Sbjct: 130 GNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMN 189
Query: 77 HASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVGQQLLERKSTAA 136
CV C C PGF G C
Sbjct: 190 GGLCVTPG---FCICPPGFYGV---NC--------------------------------- 210
Query: 137 PVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGR---PPNCRPECTINAECA 193
+ C C C C G C C +C
Sbjct: 211 ---------DKANCSTTCFNGGTCF---YPGKCICPPGLEGEQCEISKCPQPCRNGGKCI 258
Query: 194 GNLACI------NERC-KDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
G C + C K C CGAH +C N +C C G+ G
Sbjct: 259 GKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 34.1 bits (78), Expect = 0.039
Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 13/101 (12%)
Query: 145 SGNPCLPSPCGPNSICRVIGNTPACSCVESYIGR---PPNCRPECTINAECAGNLACI-- 199
+ + + GNT + + + C C C C
Sbjct: 111 GKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECP 170
Query: 200 ----NERCKDP-CPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C+ C C CV C C PGF G
Sbjct: 171 DGFHGPHCEKALCTPRCMNGGLCVTPG---FCICPPGFYGV 208
Score = 28.7 bits (64), Expect = 1.9
Identities = 37/244 (15%), Positives = 53/244 (21%), Gaps = 71/244 (29%)
Query: 2 FTYHAGTASYLVVVAVDIRRTDPHIGNTPACSCVESYIGRPPNCRPECTINAECAGNLAC 61
FT+ A + + +R D I P + +G P+ + C G
Sbjct: 58 FTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNV--PLLGTVPHKASVVQVGFPCLGKQDG 115
Query: 62 INERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMV 121
+T T TC
Sbjct: 116 --------VAAFEVDVIVMNSEGNTILKTPQNAIFFK---TC------------------ 146
Query: 122 LVVGQQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGR--- 178
P C C C C + + G
Sbjct: 147 ------------------------QQAECPGGCRNGGFCNERRI---CECPDGFHGPHCE 179
Query: 179 PPNCRPECTINAECAGNLACI------NERC-KDPCPGSCGAHASCVVLNHTPRCTCDPG 231
C P C C CI C K C +C +C + +C C PG
Sbjct: 180 KALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCF---YPGKCICPPG 236
Query: 232 FTGD 235
G+
Sbjct: 237 LEGE 240
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 35.0 bits (79), Expect = 0.011
Identities = 19/170 (11%), Positives = 34/170 (20%), Gaps = 2/170 (1%)
Query: 66 CKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVG 125
+ + V +++ C C+ G +TC E +G
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 126 QQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPE 185
+ + + + +C
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 186 CTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
N E E + C + C C GFT D
Sbjct: 124 XVPNPEDEXXCTXTGETACQLXC--NTDNEVCXNVEGVYXCQCMEGFTFD 171
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 34.4 bits (79), Expect = 0.015
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 203 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQESKH 248
C P SC H CV + + C CD G+ G C ++Q
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP---QCQFVQVDPR 161
Score = 33.2 bits (76), Expect = 0.034
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 66 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMV 113
C P SC H CV + + C CD G+ G C ++Q ++
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP---QCQFVQVDPRLI 163
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 31.3 bits (70), Expect = 0.022
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 46 RPECTINAECAGNLACINERCKDP 69
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.3 bits (70), Expect = 0.022
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 183 RPECTINAECAGNLACINERCKDP 206
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 34.7 bits (79), Expect = 0.025
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDP 206
C + G C++I C+C Y R C ECA C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGY--RLTEDGRTCQDVNECAEEGYC-------- 53
Query: 207 CPGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
C +C C+ G+ P
Sbjct: 54 -------SQGCTNSEGAFQCWCEAGYELRP 76
Score = 28.6 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 68 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGDPFS-TCFYIQE 108
+ C + G C ++ +CTC G+ TC + E
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE 46
Score = 28.6 bits (63), Expect = 2.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 205 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGDPFS-TCFYIQE 245
+ C + G C ++ +CTC G+ TC + E
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE 46
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 34.3 bits (79), Expect = 0.026
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
G+PC+ PC N C+ C+C Y G NC E N C
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLP 60
Query: 206 PCPG-SCGAHASCVVLNHTPRCTCDPGF 232
+C + +C
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQC 88
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 33.0 bits (76), Expect = 0.035
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDP 206
N C+ +PC ++ C C C+ Y G +C E + ECA +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HC--EVNTD-ECASS----------- 89
Query: 207 CPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C + C+ + +C C GFTG
Sbjct: 90 ---PCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 29.9 bits (68), Expect = 0.42
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 149 CLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCP 208
+PC C + C C++ Y G P C E +N EC N C N+
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRC--EIDVN-ECVSN-PCQND------- 56
Query: 209 GSCGAHASCVVLNHTPRCTCDPGFTGD 235
A+C+ +C C PG+ G
Sbjct: 57 ------ATCLDQIGEFQCICMPGYEGV 77
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 33.9 bits (76), Expect = 0.051
Identities = 13/57 (22%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 45 CRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFS 101
R + A N D C C H CV C CD + G
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGLYCD 564
Score = 33.9 bits (76), Expect = 0.051
Identities = 13/57 (22%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 182 CRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFS 238
R + A N D C C H CV C CD + G
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGLYCD 564
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 3 TYHAGTASYLVVVAVDIRRTDPHIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACI 62
T H +++Y RR H G C V A
Sbjct: 127 TEHHPSSTYYAGTTQGWRREVVHFGKLHLCGSVRF------RWYQGFYPAGSQPVTWAID 180
Query: 63 NERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 103
N C C H SC + +C CDPG++G
Sbjct: 181 NVYIGPQCEEMCYGHGSC---INGTKCICDPGYSGPTCKIS 218
Score = 28.8 bits (63), Expect = 1.8
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 197 ACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 240
A N C C H SC + +C CDPG++G
Sbjct: 178 AIDNVYIGPQCEEMCYGHGSC---INGTKCICDPGYSGPTCKIS 218
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 33.7 bits (76), Expect = 0.051
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDP 206
N CL + G + +C + C C + + C EC C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC-------- 49
Query: 207 CPGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
CV L +C C+ GF DP
Sbjct: 50 -------SQLCVNLEGGYKCQCEEGFQLDP 72
Score = 29.8 bits (66), Expect = 1.00
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 205 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQESKHPNR 251
+ C + G C L C C GF C I E + P+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT 48
Score = 28.3 bits (62), Expect = 2.8
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 68 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQE 108
+ C + G C L C C GF C I E
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 42
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 32.3 bits (74), Expect = 0.054
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
G+ C SPC C+ + C C+ ++ GR NC + + N C+
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR--NCETHKD---DQLICV-NENGGCEQ 100
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C G S C C G++
Sbjct: 101 YCSDHTGTKRS---------CRCHEGYSLL 121
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 31.0 bits (71), Expect = 0.064
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 149 CLPSPCGPNSICRVIGNTP---ACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
C + C NT C C YI C + EC+
Sbjct: 8 CKEPDVCKHGQCI---NTDGSYRCECPFGYILAGNECV---DTD-ECSV----------- 49
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 240
G+ + +C + CTC+ GF P TC
Sbjct: 50 ---GNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 26.8 bits (60), Expect = 2.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 72 GSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 103
G+ + +C + CTC+ GF P TC
Sbjct: 50 GNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 33.3 bits (75), Expect = 0.085
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 43 PNCRPECTINAECAGNLACINERCKDPC-PGSCGAHASCVVLNHTPRCTCD-PGFTGDPF 100
P E ++ E + + G C C V++ C C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 101 STC 103
S
Sbjct: 226 SQG 228
Score = 33.3 bits (75), Expect = 0.085
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 180 PNCRPECTINAECAGNLACINERCKDPC-PGSCGAHASCVVLNHTPRCTCD-PGFTGDPF 237
P E ++ E + + G C C V++ C C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 238 STC 240
S
Sbjct: 226 SQG 228
Score = 32.5 bits (73), Expect = 0.15
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 12/130 (9%)
Query: 72 GSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVGQQLLER 131
G + + F G R+ V S V ++
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKGWI---------RDVRVQSSLAL--PVDSGEVKLD 175
Query: 132 KSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVES-YIGRPPNCRPECTINA 190
P +G C +C V+ + C C + + G+ + E I
Sbjct: 176 DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIAT 235
Query: 191 ECAGNLACIN 200
C +
Sbjct: 236 FKGSEYFCYD 245
Score = 31.4 bits (70), Expect = 0.34
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPEC 186
C C +C + +C C + P P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 29.8 bits (66), Expect = 1.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 127 QLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPEC 186
Q+ E +STA + R + PCL +PC N +CR N C C + +C E
Sbjct: 600 QMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL-GRSCEREA 658
Query: 187 TIN 189
T+
Sbjct: 659 TVL 661
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 31.7 bits (72), Expect = 0.11
Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 15/91 (16%)
Query: 153 PCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLAC--INERCKDPCPGS 210
C +S C N AC C + C INE C S
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITT---------PMETCDDINE-CATLSKVS 54
Query: 211 CGAHASCVVLNHTPRCTCDPGFTGDPFSTCF 241
CG + C + C C PG+ + F
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTF 85
Score = 29.0 bits (65), Expect = 0.87
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 12/89 (13%)
Query: 153 PCGPNSICRVIGNTP---ACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPG 209
CG S C NT C C Y + C ++E C
Sbjct: 54 SCGKFSDCW---NTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD----VDE-CSSG-QH 104
Query: 210 SCGAHASCVVLNHTPRCTCDPGFTGDPFS 238
C + C + C C PG+
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 27.1 bits (60), Expect = 3.6
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 28 NTPACSCVESYIGRPPNCRPECTINAECAGNLAC--INERCKDPCPGSCGAHASCVVLNH 85
N AC C + C INE C SCG + C
Sbjct: 17 NATACRCNPGFSSFSEIITT---------PMETCDDINE-CATLSKVSCGKFSDCWNTEG 66
Query: 86 TPRCTCDPGFTGDPFSTCFYIQERNH 111
+ C C PG+ + F + N
Sbjct: 67 SYDCVCSPGYEPVSGAKTFKNESENT 92
Score = 26.3 bits (58), Expect = 6.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 205 DPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C C +SCV + C C+PGF+
Sbjct: 3 RGCARWCPQDSSCV---NATACRCNPGFSSF 30
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 32.7 bits (74), Expect = 0.12
Identities = 29/146 (19%), Positives = 43/146 (29%), Gaps = 56/146 (38%)
Query: 147 NPCLPSPCGPNSICRVIGNTPA-----CSCVESYIGRPPNCRP--ECTIN----AECAGN 195
+ CL +PC P + C + P C ++G +C EC + +
Sbjct: 4 DGCLSNPCFPGAQCS---SFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKV 60
Query: 196 LACINE----RCKDPCP---------------------------------GSCGAHASCV 218
C+N C PCP +C HA C+
Sbjct: 61 PRCVNTQPGFHC-LPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 219 VLNH----TPRCTCDPGFTGDPFSTC 240
L H +C C G+ GD
Sbjct: 120 YLGHFSDPMYKCECQTGYAGDGLICG 145
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 31.3 bits (71), Expect = 0.15
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 66 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGD 98
C SC H CV + C CDPGF+G
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 31.3 bits (71), Expect = 0.15
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 203 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C SC H CV + C CDPGF+G
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 31.2 bits (71), Expect = 0.16
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 148 PCLPSPCGPNSIC--RVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCK- 204
C P+PC IC + + +C C + + PNC + C
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTD--PNC--SSVVEVASDEEEPTSAGPCTP 57
Query: 205 DPCP--GSC-GAHASCVVLNHTPRCTCDPGFTGD 235
+PC G+C + A C C GF G
Sbjct: 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
Score = 26.2 bits (58), Expect = 6.7
Identities = 22/98 (22%), Positives = 27/98 (27%), Gaps = 26/98 (26%)
Query: 145 SGNPCLPSPCGPNSICRVIGNTPA-------CSCVESYIGRPPNCRPECTINAECAGNLA 197
S PC P+PC C + C C + G +C + IN EC
Sbjct: 51 SAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG--IHC--QHNIN-ECEVE-- 103
Query: 198 CINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C C L C C F G
Sbjct: 104 ------------PCKNGGICTDLVANYSCECPGEFMGR 129
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.5 bits (69), Expect = 0.21
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 17/91 (18%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
S C + C + +C C + GR C+ E + C+
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR--FCQREVSFL-NCS------------ 58
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
G C + C+ RC+C PG+
Sbjct: 59 LDNGGCTHY--CLEEVGWRRCSCAPGYKLGD 87
Score = 27.8 bits (62), Expect = 1.7
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 61 CINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 103
C+ + PC C H +C+ + C C G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE 51
Score = 27.8 bits (62), Expect = 1.7
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 198 CINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 240
C+ + PC C H +C+ + C C G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE 51
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.6 bits (70), Expect = 0.25
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 52 NAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNH 111
+ + +PCP C H C+ + C CD G+T + +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDCI----SGVCFCDLGYTAAQGTCVSNTPNHSE 231
Query: 112 MVMGSRDQMV 121
M ++
Sbjct: 232 MFDRFEGKLS 241
Score = 31.2 bits (69), Expect = 0.33
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 189 NAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQ 244
+ + +PCP C H C+ + C CD G+T +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDCI----SGVCFCDLGYTAAQGTCVSNTP 227
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 30.8 bits (70), Expect = 0.27
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 17/84 (20%)
Query: 153 PCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCG 212
C + R ACS +C C++ C
Sbjct: 48 NCYLDIRPRGDNGDTACSNEIGVGVSKASC--CCSLGKAWGTP---------------CE 90
Query: 213 AHASCVVLNHTPRCTCDPGFTGDP 236
+ + C GF +P
Sbjct: 91 MCPAVNTSEYKILCPGGEGFRPNP 114
Score = 29.6 bits (67), Expect = 0.51
Identities = 24/172 (13%), Positives = 35/172 (20%), Gaps = 55/172 (31%)
Query: 65 RCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVV 124
C D G+C N C+ + G S C +
Sbjct: 40 GCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL------------------ 81
Query: 125 GQQLLERKSTAAPVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRP 184
+PC C E + RP
Sbjct: 82 ----------------------GKAWGTPCEMCPAVNTSEYKILCPGGEGF--RPNPITV 117
Query: 185 ECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
EC PG C C+ + +C C G+ +
Sbjct: 118 ILEDIDECQEL------------PGLCQ-GGKCINTFGSFQCRCPTGYYLNE 156
Score = 29.6 bits (67), Expect = 0.57
Identities = 18/95 (18%), Positives = 23/95 (24%), Gaps = 25/95 (26%)
Query: 149 CLPSPCGPNSICRVIGNTP---ACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
CL + C NTP C C + P C D
Sbjct: 6 CLDPTTCISGNCV---NTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 240
G+C N C+ + G S C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.1 bits (70), Expect = 0.29
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPEC 186
C C +C + +C C + P P
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 28.4 bits (63), Expect = 2.7
Identities = 16/78 (20%), Positives = 19/78 (24%), Gaps = 12/78 (15%)
Query: 191 ECAGNLACINERCKDPC-PGSCGAHASCVVLNHTPRCTCD-PGFTGD----------PFS 238
C G + E C SC C+ C C F+G
Sbjct: 172 FCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 231
Query: 239 TCFYIQESKHPNRRLVTF 256
I PN R T
Sbjct: 232 GGGQITYKWPPNDRPSTR 249
Score = 27.3 bits (60), Expect = 5.3
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 54 ECAGNLACINERCKDPC-PGSCGAHASCVVLNHTPRCTCD-PGFTG 97
C G + E C SC C+ C C F+G
Sbjct: 172 FCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG 217
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 30.7 bits (68), Expect = 0.30
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 9/96 (9%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPP---NCRPECTINAEC---AGNLACI 199
+P + P C+ G + + N
Sbjct: 84 ADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFF 143
Query: 200 NERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
+ CPG C C N C C GF G
Sbjct: 144 KTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 30.3 bits (67), Expect = 0.45
Identities = 14/76 (18%), Positives = 18/76 (23%), Gaps = 9/76 (11%)
Query: 29 TPACSCVESYIGRPP---NCRPECTINAEC---AGNLACINERCKDPCPGSCGAHASCVV 82
C+ G + + N + CPG C C
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC-- 161
Query: 83 LNHTPRCTCDPGFTGD 98
N C C GF G
Sbjct: 162 -NERRICECPDGFHGP 176
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.2 bits (70), Expect = 0.35
Identities = 18/105 (17%), Positives = 25/105 (23%), Gaps = 16/105 (15%)
Query: 144 PSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGR----PPNCRPECTINAECAGNLAC- 198
+P R C C Y P C C CA L
Sbjct: 554 ERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFE 613
Query: 199 ---INERCKDPCPG-----SCGAHASCVVLNHTPRCTCDPGFTGD 235
+ C CPG + +C + C +T +
Sbjct: 614 KGPFGKNCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE 655
Score = 29.7 bits (66), Expect = 1.2
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 32 CSCVESYIGR----PPNCRPECTINAECAGNLAC----INERCKDPCPG-----SCGAHA 78
C C Y P C C CA L + C CPG +
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGR 638
Query: 79 SCVVLNHTPRCTCDPGFTGD 98
+C + C +T +
Sbjct: 639 TCKERD---SEGCWVAYTLE 655
Score = 28.5 bits (63), Expect = 2.3
Identities = 27/216 (12%), Positives = 41/216 (18%), Gaps = 53/216 (24%)
Query: 25 HIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLN 84
I + I A ++ + + C + +
Sbjct: 382 QINVPITFQVKVTATECIQEQ--SFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHG 439
Query: 85 HTP----RCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVGQQLLERKSTAAPVAA 140
C CD G+ G
Sbjct: 440 KGFLECGICRCDTGYIGKNCECQ------------------------------------- 462
Query: 141 EPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNL-ACI 199
S CR N+ CS + + C G C
Sbjct: 463 -------TQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECD 515
Query: 200 NERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
C+ CG + +C C PGF G
Sbjct: 516 TINCERYNGQVCGGPGRGL--CFCGKCRCHPGFEGS 549
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.1 bits (68), Expect = 0.44
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 203 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQES 246
C SC C+ C+C PGF G C Y+++
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP---ECEYVRDD 159
Score = 30.1 bits (68), Expect = 0.45
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 66 CKDP--CPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQE 108
C SC C+ C+C PGF G C Y+++
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP---ECEYVRD 158
Score = 27.1 bits (60), Expect = 3.7
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 148 PCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNC 182
C C C CSC + G P C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 0.54
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 3/100 (3%)
Query: 145 SGNPCLP-SPCGPNSICRVIGNTPACSCVESYIGRPPNCR--PECTINAECAGNLACINE 201
G PCL + ++ + A VE++ P C + + C
Sbjct: 32 HGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLN 91
Query: 202 RCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCF 241
C++ G T + F
Sbjct: 92 YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATF 131
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 29.7 bits (66), Expect = 0.96
Identities = 30/206 (14%), Positives = 42/206 (20%), Gaps = 57/206 (27%)
Query: 32 CSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCGAHASCVVLNHTPRCTC 91
C + + ++ + + C + +P C C C
Sbjct: 406 CPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGV---CRC 462
Query: 92 DPGFTGD--PFSTCFYIQERNHMVMGSRDQMVLVVGQQLLERKSTAAPVAAEPRPSGNPC 149
PG+ G S Y + C
Sbjct: 463 GPGWLGSQCECSEEDYRPS------------------------------------QQDEC 486
Query: 150 LPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPG 209
P P R C C S G C C + C
Sbjct: 487 SPREGQPVCSQRGECLCGQCVCHSSDFG--KITGKYC----------ECDDFSCVRYKGE 534
Query: 210 SCGAHASCVVLNHTPRCTCDPGFTGD 235
C H C C CD +TG
Sbjct: 535 MCSGHGQCS----CGDCLCDSDWTGY 556
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.8 bits (66), Expect = 0.96
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 21/98 (21%)
Query: 147 NPCLPSPCGPN-SICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKD 205
C + ++C + C C + G P+C +CK
Sbjct: 292 KVRGRCKCNLHATVCVYDNSKLTCECEHNTTG--PDC------------------GKCKK 331
Query: 206 PCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYI 243
G + S + + C P + + C
Sbjct: 332 NYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE 369
Score = 27.5 bits (60), Expect = 5.1
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 64 ERCKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNH 111
+CK G + S + + C P + + C
Sbjct: 327 GKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQ 374
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 63 NERCKDPCPGSCGAHASCVVL-NHTPRCTCDPGFTGDPFSTC 103
C D P C HA CV+ + + C C G+ G+
Sbjct: 18 QRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 200 NERCKDPCPGSCGAHASCVVL-NHTPRCTCDPGFTGDPFSTC 240
C D P C HA CV+ + + C C G+ G+
Sbjct: 18 QRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 29.0 bits (65), Expect = 1.7
Identities = 12/99 (12%), Positives = 21/99 (21%), Gaps = 13/99 (13%)
Query: 145 SGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCK 204
S + ++ C S+ L + +
Sbjct: 265 PSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHD----------TDFLGEELDIVAAKSH 314
Query: 205 DPCPGSCGAHASCVVLNHTPR---CTCDPGFTGDPFSTC 240
+ C C C +TP C G S+
Sbjct: 315 EACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSN 353
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural
genomics, structural genomics of pathogenic protozoa
consortium, SGPP; 2.35A {Leishmania major}
Length = 225
Score = 28.6 bits (63), Expect = 1.8
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 1 MFTYHAGTASYLVVVAVDIRRTDPHIGNTPACSCVESYIGRPPNCRPECTINAECAGNLA 60
+ YHAG L V+ D + D PA E+ G
Sbjct: 83 TWMYHAGDPLQLHVILKDPQDEDRIAAQPPAAPQAETDTADAR--PKYQVYRRVLVGARV 140
Query: 61 CINERCKDPCPGSCGAHASCVVLNHTPR-------CTCDPGFT 96
E + PG +S + C PGF
Sbjct: 141 ERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVSPGFD 183
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.4 bits (60), Expect = 2.2
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 145 SGNPCLPSPCGPNSIC-RVIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERC 203
S + C+ + N+ C R + T C+ + C + C N
Sbjct: 9 SAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---VPASITCEEN-------- 57
Query: 204 KDPCPGSCGAHASCVVLNHTPR-CTCDPGFTG 234
G C A C + + C C +
Sbjct: 58 ----NGGCAPEAECTMDDKKEVECKCTKEGSE 85
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 27.7 bits (62), Expect = 2.6
Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 147 NPCLPSPCGPNSICRVIGNTP---ACSCVESYIGRPPNCRPECTINAEC---AGNLACIN 200
+ C SPC N +C+ N+P C C P TI C + C
Sbjct: 5 DECESSPCI-NGVCK---NSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 201 ER----CKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTC 240
K C S GA C G++ + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 28.0 bits (60), Expect = 3.6
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 12/110 (10%)
Query: 22 TDPHIGNTPACSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPCPGSCGAHASCV 81
DP +T ++ C P + + PCP A
Sbjct: 1 ADPPAPSTRRPPAPNLHVSPELFCEPREVRRVQW--PATQQGMLVERPCPKGTRGIA--- 55
Query: 82 VLNHTPRCTCDPGFT---GDPFSTCFYIQERNHMVMGSRDQMVLVVGQQL 128
+ +C G G S C + + +L
Sbjct: 56 ----SFQCLPALGLWNPRGPDLSNCTSPWVNQVAQKIKSGENAANIASEL 101
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 27.8 bits (62), Expect = 4.0
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 13 VVVAVDIRRTDPHIGNTPACSCVESYIGRPPNCRP---ECTIN 52
VV++VD +R + E+ P + +CTI
Sbjct: 402 VVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIK 444
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 27.4 bits (60), Expect = 4.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 73 SCGAHASCVVLNHTPRCTCDPGFTGD 98
C HA C C C +TG+
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGN 39
Score = 27.4 bits (60), Expect = 4.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 210 SCGAHASCVVLNHTPRCTCDPGFTGD 235
C HA C C C +TG+
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGN 39
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 27.3 bits (60), Expect = 6.0
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 136 APVAAEPRPSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRP 179
AP+A+ P P+ P P + C + + +
Sbjct: 1 APLASVPTPAFP--FPVPTMVHGPCVAESEPALLTGSKQFGLSR 42
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens}
SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B*
2y94_B* 2ya3_B*
Length = 87
Score = 25.6 bits (56), Expect = 7.1
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 76 AHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVG 125
H V+LN +CDP +P NH+ S V+V+
Sbjct: 25 PHLLQVILNKDTNISCDPALLPEPNHVML-----NHLYALSIKDSVMVLS 69
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 26.7 bits (60), Expect = 7.9
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 1 MFTYHAGTASYLVVVAVDIRRTDPHIG 27
++T A A +LVV + G
Sbjct: 141 VWTTAAAYADHLVVFG----LQEDGSG 163
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 26.8 bits (58), Expect = 7.9
Identities = 16/90 (17%), Positives = 20/90 (22%), Gaps = 5/90 (5%)
Query: 145 SGNPCLPSPCGPNSICRVIGNTPACSCVESYIGRPPNCRPECTINAEC-AGNLACINERC 203
C Y+ C PEC + NL C C
Sbjct: 249 QDWRC--VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC--TPC 304
Query: 204 KDPCPGSCGAHASCVVLNHTPRCTCDPGFT 233
PCP C ++ G T
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 26.8 bits (58), Expect = 9.2
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 32 CSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPC 70
C E G C C ++ EC+G C + C C
Sbjct: 111 CPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTC 149
Score = 26.8 bits (58), Expect = 9.2
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 169 CSCVESYIGRPPNCRPECTINAECAGNLACINERCKDPC 207
C E G C C ++ EC+G C + C C
Sbjct: 111 CPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTC 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.479
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,003,823
Number of extensions: 244120
Number of successful extensions: 1445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 495
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)