RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13151
(256 letters)
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 26
Score = 30.8 bits (69), Expect = 0.010
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 46 RPECTINAECAGNLACINERCKDP 69
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.8 bits (69), Expect = 0.010
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 183 RPECTINAECAGNLACINERCKDP 206
RPEC +N++C N AC+N++C+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 27.8 bits (62), Expect = 0.16
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 66 CKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 98
+ PC C H +C+ + C C G+ G
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 27.8 bits (62), Expect = 0.16
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 203 CKDPCPGSCGAHASCVVLNHTPRCTCDPGFTGD 235
+ PC C H +C+ + C C G+ G
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 25.5 bits (56), Expect = 1.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 144 PSGNPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
P +PC CG + C + +C C + GR
Sbjct: 6 PLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEGR 39
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.8 bits (57), Expect = 0.83
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
+ C +PC C+ N+ C C + G+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 23.5 bits (51), Expect = 5.6
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 68 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGD 98
D C C SC ++ C C GF G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 23.5 bits (51), Expect = 5.6
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 205 DPC-PGSCGAHASCVVLNHTPRCTCDPGFTGD 235
D C C SC ++ C C GF G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 25.4 bits (56), Expect = 0.84
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 146 GNPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
G+ C SPC C+ + C C+ ++ GR
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 34
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.5 bits (56), Expect = 1.0
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
C + C + C N C C + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGL 33
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 1.1
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
C C C CSC + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 33
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.2 bits (55), Expect = 1.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 74 CGAHASCVVLNHTPRCTCDPGFTGD 98
C HA C C C +TG+
Sbjct: 9 CSVHAECRDYATGFCCRCVANYTGN 33
Score = 25.2 bits (55), Expect = 1.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 211 CGAHASCVVLNHTPRCTCDPGFTGD 235
C HA C C C +TG+
Sbjct: 9 CSVHAECRDYATGFCCRCVANYTGN 33
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.0 bits (55), Expect = 1.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
N C+ +PC ++ C C C+ Y G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33
Score = 22.7 bits (49), Expect = 8.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 68 DPCPGS-CGAHASCVVLNHTPRCTCDPGFTGD 98
+ C + C A+C+ +C C PG+ G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33
Score = 22.7 bits (49), Expect = 8.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 205 DPCPGS-CGAHASCVVLNHTPRCTCDPGFTGD 235
+ C + C A+C+ +C C PG+ G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.6 bits (54), Expect = 1.8
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
+ C SPC N C N C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGH 32
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 24.7 bits (54), Expect = 1.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 147 NPCLPSPCGPNSICRVIGNTPACSCVESYIGR 178
+ C SPC C+ C+C+E + G+
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 32
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.1 bits (55), Expect = 3.4
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 77 HASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVG 125
H V+LN +CDP +P NH+ S V+V+
Sbjct: 22 HLLQVILNKDTNISCDPALLPEPNHVML-----NHLYALSIKDSVMVLS 65
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.9 bits (52), Expect = 3.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 74 CGAHASCVVLNHTPRCTCDPGFTGD 98
C C+ + C C G+TG
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGP 37
Score = 23.9 bits (52), Expect = 3.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 211 CGAHASCVVLNHTPRCTCDPGFTGD 235
C C+ + C C G+TG
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGP 37
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 9/34 (26%)
Query: 70 CPGSCGAHASCVVLNHTPRCTCDPG--FTGDPFS 101
CP + S C CD G FT +S
Sbjct: 291 CPLDKEVYNSN-------NCECDQGNDFTFQGYS 317
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 9/34 (26%)
Query: 207 CPGSCGAHASCVVLNHTPRCTCDPG--FTGDPFS 238
CP + S C CD G FT +S
Sbjct: 291 CPLDKEVYNSN-------NCECDQGNDFTFQGYS 317
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 23.6 bits (51), Expect = 5.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 72 GSCGAHASCVVLNHTPRCTCDPGFTGDPFS 101
H C+ + + RC C G+
Sbjct: 11 PDVCKHGQCINTDGSYRCECPFGYILAGNE 40
Score = 23.6 bits (51), Expect = 5.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 209 GSCGAHASCVVLNHTPRCTCDPGFTGDPFS 238
H C+ + + RC C G+
Sbjct: 11 PDVCKHGQCINTDGSYRCECPFGYILAGNE 40
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 23.5 bits (51), Expect = 5.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 68 DPCPGSCGAHASCVVLNHTPRCTCDPGFTGDP 99
D C CV L +C C+ GF DP
Sbjct: 2 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 33
Score = 23.5 bits (51), Expect = 5.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 205 DPCPGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
D C CV L +C C+ GF DP
Sbjct: 2 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 33
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta
subunit {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 93
Score = 24.4 bits (53), Expect = 6.1
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 69 PCPGSCGAHASCVVLNHTPRCTCDPGFTGDPFSTCFYIQERNHMVMGSRDQMVLVVG 125
P P S H +LN D +P NH+ + VL +
Sbjct: 23 PKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLL-----NHLAAANTQLGVLALS 74
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 23.8 bits (51), Expect = 6.2
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 62 INERCKDPCP-GSCGAHASCVVLNHTPRCTCDPGFTGD 98
E+ K C G + C C PGFTG
Sbjct: 6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43
Score = 23.8 bits (51), Expect = 6.2
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 199 INERCKDPCP-GSCGAHASCVVLNHTPRCTCDPGFTGD 235
E+ K C G + C C PGFTG
Sbjct: 6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 23.7 bits (51), Expect = 6.6
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 147 NPCLPSPCGPNSICRVI--GNTPACSCVESYIGR 178
C +C I ++ C+CV Y G
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 22.9 bits (49), Expect = 8.2
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 71 PGSCGAHASCVVLNHTPRCTCDPGFTGDP 99
P CG CV C CD G+
Sbjct: 10 PDLCG-RGQCVNTPGDFECKCDEGYESGF 37
Score = 22.9 bits (49), Expect = 8.2
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 208 PGSCGAHASCVVLNHTPRCTCDPGFTGDP 236
P CG CV C CD G+
Sbjct: 10 PDLCG-RGQCVNTPGDFECKCDEGYESGF 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.479
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,033,028
Number of extensions: 53629
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 178
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)